Psyllid ID: psy2224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRSSVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYRV
cccccEEEEEEEEEcccccHHHHHHHHHHHHHHHccEEEEccccccccccccccEEEEEEEcccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHcccEEccccccccccccccccccEEEEccEEEEEEEcccEEEEEEEccccccccccHHHHHHHHHcccHHHHHHHHHHccccEEEEEEccEEEEEEcccccccccccccccccEEEHHHHHHHHcccccccccccEEEEEccccccccccccEEEEccccHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEEcccEEEEcccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHccccEEEccccEEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHcc
ccccEEEEEEEEcccccccHHHHHHHHHHHHHHHccccEcccEEEccccccccEEEEccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEccccccccccccEcccccEEEEcccEEEEccccccEEEEEEEcHHHHcccHHHHHHHHHHHcccHHHHHHHHHHccEEEEEEccccEEEEccccccccccccccccccEEEHHHHHHHHccEEEEcccccEEEEccccccccccccccEEEcHHHHHHccccHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHccccEccccEEEcccEcccccEEEccccEEEcccccccccHHHcccccccccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccEEEEcccccccHHHHHHHHEEHEEEccccccEEEEEccccEEEEEEEEcccccccccEEEEEEEEcccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHccc
mptwtlnlyridfnppedimgvkrgllrdhkdkigayvfdgtmmftpntiIGKEMKLMskkrdetpveLTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLgrnyfdpaakedipqyrlevwpgwdtSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTkynnktyrvddiqydvtpcstfpmkgenvsYIDYYQKKYNETirnrnqpmivhKSKLRELRAGQSEIIYLVPElcyltglsddmradfrlmkplgeitrvrpreRVAKFNVFRKRIENSEAKEVLKRWELALDTNLarvqghilppdsiifsdplkpfpvgpdanwttptrssvfrapnlerWCVLTTGFMMADTENFLQLINKAAQGmrfkvnrpnvivkknlaskgALTIATKVAIQLCCkiggapwsvavplKGLMVLGfdvthdsdlkgssygALVASidpqmsswfsrvsphrsgnelsnDIAVSVVHALHKYRV
mptwtlnlyridfnppediMGVKRGLLRDHKDKIGAyvfdgtmmfTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFdpaakedipqyrlEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTkynnktyrvddiqydvtpcstfpmkgenvSYIDYYQKKYNEtirnrnqpmiVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMkplgeitrvrprervakfnvfrkrienseakevLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANwttptrssvfrapnLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYRV
MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRSSVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYRV
***WTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTIIGKEMKLM******TPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRSSVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDP****WF***************IAVSVVHAL*****
MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTIIGKEMKLMS*KRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVH*************IIYLVPELCYLTGLSDDMR***RLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRSSVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYRV
MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRSSVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYRV
MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLREL*AGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRSSVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYRV
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MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRSSVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query504 2.2.26 [Sep-21-2011]
Q8UVX0 858 Piwi-like protein 1 OS=Da yes N/A 0.986 0.579 0.329 3e-83
Q9JMB7 862 Piwi-like protein 1 OS=Mu yes N/A 0.986 0.576 0.335 7e-80
Q96J94 861 Piwi-like protein 1 OS=Ho yes N/A 0.986 0.577 0.337 8e-80
A6N7Y9 867 Piwi-like protein 1 OS=Ga yes N/A 0.984 0.572 0.318 2e-79
A8KBF3 949 Piwi-like protein 2 OS=Xe yes N/A 0.968 0.514 0.295 2e-77
Q9VKM1 843 Protein piwi OS=Drosophil no N/A 0.795 0.475 0.338 5e-77
Q7Z3Z4 852 Piwi-like protein 4 OS=Ho no N/A 0.984 0.582 0.303 2e-73
Q4G033 848 Piwi-like protein 4 OS=Ra no N/A 0.978 0.581 0.293 3e-70
Q8CGT6 848 Piwi-like protein 4 OS=Mu no N/A 0.978 0.581 0.300 2e-69
A6P7L8 1054 Piwi-like protein 2 OS=On N/A N/A 0.968 0.462 0.290 2e-67
>sp|Q8UVX0|PIWL1_DANRE Piwi-like protein 1 OS=Danio rerio GN=piwil1 PE=1 SV=1 Back     alignment and function desciption
 Score =  309 bits (792), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 186/565 (32%), Positives = 286/565 (50%), Gaps = 68/565 (12%)

Query: 2   PTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIG-AYVFDGTMMFTPNTIIGKEMKLMSK 60
           P W L  Y +D+ PP +   ++  LL  H++ +G A+ FDG ++F PN +   E  L S+
Sbjct: 123 PMWALYQYHVDYKPPMESRRLRSALLFQHEETLGKAHTFDGAILFLPNKLRNAETVLCSE 182

Query: 61  KRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQY 120
            R+   VE+T+     L        Q +NIL R+ LR L+++ +GR+Y++P    +IPQ+
Sbjct: 183 TRNGEKVEITVTLTNELPPSSPVCLQFYNILFRRILRILNMQQIGRHYYNPDDPFNIPQH 242

Query: 121 RLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAW----EQCRNDKYFYYRKFEAQ 176
           RL +WPG+ T++ Q E+ IMLC ++SHKVLR ETVLD      +QC + +  +      +
Sbjct: 243 RLTIWPGFMTTILQYESSIMLCSDVSHKVLRSETVLDFMYSLRQQCGDQR--FPEACTKE 300

Query: 177 MTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIV 236
           +   I+LTKYNNKTYR+DDI +D TP +TF      +S+ +Y++ +Y   I + NQ ++V
Sbjct: 301 LVGLIILTKYNNKTYRIDDIAWDHTPNNTFKKGDTEISFKNYFKSQYGLDITDGNQVLLV 360

Query: 237 -HKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNV 295
            H  +L            LVPE CYLTGL+D MRADF +MK L   TR+ P +R  + N 
Sbjct: 361 SHVKRLGPSGRPPPGPAMLVPEFCYLTGLTDKMRADFNIMKDLASHTRLSPEQREGRINR 420

Query: 296 FRKRIE-NSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGP-DANWTTP 353
               I  N + +  L  W L+ +  L  + G +LP + II     + F   P  A+W+  
Sbjct: 421 LISNINRNGDVQNELTTWGLSFENKLLSLNGRVLPSERIIQGG--RAFEYNPWTADWSKE 478

Query: 354 TRS-SVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVI--------- 403
            R   +    +L+ W +  T       ++ LQ +NK +  M  ++ R  +I         
Sbjct: 479 MRGLPLISCMSLDNWLMFYTRRNADVAQSLLQTLNKVSGPMGIRMQRAVMIEYEDRQESL 538

Query: 404 -----------------------------VKKNLA-----------------SKGALTIA 417
                                        VKK L                   +  +T+A
Sbjct: 539 LRALQQNVARETQMVVVILPTNRKDKYDCVKKYLCVDCPTPSQCVVSRTISKPQALMTVA 598

Query: 418 TKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSR 477
           TK+A+Q+ CK+GG  WSV +PL+ LM++G D  HD+     S GA+VAS++  MS WFS+
Sbjct: 599 TKIALQMNCKMGGELWSVEIPLRQLMIVGIDCYHDTAAGKRSIGAMVASLNQGMSRWFSK 658

Query: 478 VSPHRSGNELSNDIAVSVVHALHKY 502
                 G E+ + +  S+  AL  Y
Sbjct: 659 CVLQNRGQEIIDALKGSLQGALKAY 683
Plays a central role during gametogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Directly binds methylated piRNAs, a class of 24 to 30 nucleotide RNAs that are generated by a Dicer-independent mechanism and are primarily derived from transposons and other repeated sequence elements. Has a strong preference for piRNAs with a uridine nucleotide at their 5'-end and binds piRNAs in an opposite direction compared to piwil2/zili. Participates in a piRNA amplification loop with piwil2/zili. Besides their function in transposable elements repression, piRNAs are probably involved in other processes during meiosis such as translation regulation.
Danio rerio (taxid: 7955)
>sp|Q9JMB7|PIWL1_MOUSE Piwi-like protein 1 OS=Mus musculus GN=Piwil1 PE=1 SV=1 Back     alignment and function description
>sp|Q96J94|PIWL1_HUMAN Piwi-like protein 1 OS=Homo sapiens GN=PIWIL1 PE=1 SV=1 Back     alignment and function description
>sp|A6N7Y9|PIWL1_CHICK Piwi-like protein 1 OS=Gallus gallus GN=PIWIL1 PE=2 SV=1 Back     alignment and function description
>sp|A8KBF3|PIWL2_XENTR Piwi-like protein 2 OS=Xenopus tropicalis GN=piwil2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VKM1|PIWI_DROME Protein piwi OS=Drosophila melanogaster GN=piwi PE=2 SV=1 Back     alignment and function description
>sp|Q7Z3Z4|PIWL4_HUMAN Piwi-like protein 4 OS=Homo sapiens GN=PIWIL4 PE=2 SV=2 Back     alignment and function description
>sp|Q4G033|PIWL4_RAT Piwi-like protein 4 OS=Rattus norvegicus GN=Piwil4 PE=2 SV=2 Back     alignment and function description
>sp|Q8CGT6|PIWL4_MOUSE Piwi-like protein 4 OS=Mus musculus GN=Piwil4 PE=1 SV=3 Back     alignment and function description
>sp|A6P7L8|PIWL2_ONCMY Piwi-like protein 2 OS=Oncorhynchus mykiss GN=piwil2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
383865769 876 PREDICTED: protein piwi-like [Megachile 0.988 0.568 0.422 1e-117
166706856 899 aubergine protein [Bombyx mori] gi|15767 0.994 0.557 0.397 1e-113
409194601 814 piwi-like protein, partial [Gryllus bima 0.990 0.613 0.397 1e-113
345491719 773 PREDICTED: protein piwi-like [Nasonia vi 0.990 0.645 0.398 1e-110
307175681 748 Protein piwi [Camponotus floridanus] 0.994 0.669 0.377 1e-109
156545129 893 PREDICTED: protein piwi-like [Nasonia vi 0.988 0.557 0.392 1e-109
380021202 892 PREDICTED: protein piwi-like [Apis flore 0.988 0.558 0.392 1e-109
193660928 850 PREDICTED: piwi-like protein 1-like [Acy 0.990 0.587 0.384 1e-108
258619148 799 aubergine variant [Apis mellifera] 0.988 0.623 0.390 1e-108
357625350 1117 aubergine protein [Danaus plexippus] 0.988 0.445 0.408 1e-108
>gi|383865769|ref|XP_003708345.1| PREDICTED: protein piwi-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/561 (42%), Positives = 327/561 (58%), Gaps = 63/561 (11%)

Query: 4   WTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTIIGKEMKLMSKKRD 63
           W L  YR+DF P ED   V++GLL+ HK K+GAYVFDGT++++       E    +++ D
Sbjct: 148 WCLYQYRVDFAPDEDRTVVRKGLLKLHKQKLGAYVFDGTVLYSSRRADDVEEFWSTRQSD 207

Query: 64  ETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLE 123
              V +TIR V  L   D QY Q FNI++R+ L  L L+L+GR+YFD  +K +I ++RLE
Sbjct: 208 GANVRITIRLVGELMRNDPQYLQFFNIIMRKCLDLLKLQLVGRDYFDARSKVEIQEFRLE 267

Query: 124 VWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQC--RNDKYFYYRKFEAQMTNSI 181
           +WPG+ TS+RQ ENDI++C E++HKV+R++TVLD    C  RN +  +   FE Q+T  +
Sbjct: 268 LWPGYLTSIRQHENDILMCAEVTHKVMRQQTVLDILNDCYQRNSRS-WKESFERQVTGLV 326

Query: 182 VLTKYNNKTYRVDDIQYDVTPCSTFPMK-GENVSYIDYYQKKYNETIRNRNQPMIVHKSK 240
           VLT YNN TYR+ DI YD  P STF ++ GE++SY DYYQ KY   IRN +QPM+V + K
Sbjct: 327 VLTDYNNNTYRITDIDYDTNPTSTFKLRSGESISYKDYYQNKYRIGIRNDSQPMLVTRLK 386

Query: 241 LRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRI 300
            +E  AGQ E++YLVPELC  TGL+D+MR +F LM  L + TR+ P+ R+AK   F +R+
Sbjct: 387 PKERHAGQPELVYLVPELCRATGLTDNMRENFHLMAALAKHTRISPKSRIAKLMTFNRRL 446

Query: 301 ENSEA-KEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRS-SV 358
            +  A ++ L  W L LD  L  + G  LPP+ II     +P   G  A+WT    + ++
Sbjct: 447 HSESAIRQELDEWNLKLDDKLVNITGRALPPEKIILGGN-RPVSAGKTADWTRELHNKAL 505

Query: 359 FRAPNLERWCVLTTGFMMADTENFLQ---------------------------------- 384
           F    L  W ++    M  + E F++                                  
Sbjct: 506 FNTAKLSNWVLICMHRMRHEVEKFIRMLQESARGMGCTIENPRYWDINDDRSNTYSDTLE 565

Query: 385 ---------------LINKAAQGMRFK----VNRP---NVIVKKNLASKGALTIATKVAI 422
                          L N+A +    K    V+RP    V + KNL SKG  +IATKVAI
Sbjct: 566 RIMSSSNPELVFCLVLNNRADRYSAIKKKCIVDRPVPSQVFLAKNLNSKGVRSIATKVAI 625

Query: 423 QLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHR 482
           QL CK+GGAPWSV +P   LMV+GFDV HD   K   +GA+VAS+D  ++ +FS VS H 
Sbjct: 626 QLTCKLGGAPWSVELPPINLMVVGFDVCHDPSDKSRDFGAMVASLDKGLTRYFSAVSAHN 685

Query: 483 SGNELSNDIAVSVVHALHKYR 503
           SG ELSN  +V+++ ALH YR
Sbjct: 686 SGEELSNQFSVNMMKALHCYR 706

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|166706856|ref|NP_001098066.2| aubergine protein [Bombyx mori] gi|157674348|gb|ABV60274.1| PIWI [Bombyx mori] gi|164605503|dbj|BAF98574.1| Piwi [Bombyx mori] gi|166245170|dbj|BAF73718.2| siwi [Bombyx mori] Back     alignment and taxonomy information
>gi|409194601|gb|AFV31611.1| piwi-like protein, partial [Gryllus bimaculatus] Back     alignment and taxonomy information
>gi|345491719|ref|XP_001607362.2| PREDICTED: protein piwi-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307175681|gb|EFN65569.1| Protein piwi [Camponotus floridanus] Back     alignment and taxonomy information
>gi|156545129|ref|XP_001602384.1| PREDICTED: protein piwi-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380021202|ref|XP_003694460.1| PREDICTED: protein piwi-like [Apis florea] Back     alignment and taxonomy information
>gi|193660928|ref|XP_001949497.1| PREDICTED: piwi-like protein 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|258619148|gb|ACV84378.1| aubergine variant [Apis mellifera] Back     alignment and taxonomy information
>gi|357625350|gb|EHJ75824.1| aubergine protein [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
FB|FBgn0000146 866 aub "aubergine" [Drosophila me 0.789 0.459 0.359 1.2e-100
FB|FBgn0004872 843 piwi "piwi" [Drosophila melano 0.795 0.475 0.338 1.4e-93
ZFIN|ZDB-GENE-030813-2 858 piwil1 "piwi-like 1 (Drosophil 0.789 0.463 0.350 6.5e-83
UNIPROTKB|Q96J94 861 PIWIL1 "Piwi-like protein 1" [ 0.779 0.456 0.372 9.4e-82
UNIPROTKB|F1RFQ4 861 PIWIL1 "Piwil1 protein" [Sus s 0.793 0.464 0.365 1.9e-81
UNIPROTKB|A6N7Y9 867 PIWIL1 "Piwi-like protein 1" [ 0.781 0.454 0.355 1.9e-81
UNIPROTKB|E1BXZ3 858 PIWIL1 "Piwi-like protein 1" [ 0.781 0.459 0.355 1.9e-81
UNIPROTKB|F1NH47 874 PIWIL1 "Piwi-like protein 1" [ 0.781 0.450 0.355 1.9e-81
UNIPROTKB|E1BJC4 861 PIWIL1 "Uncharacterized protei 0.793 0.464 0.363 4e-81
UNIPROTKB|E2RDI9 861 PIWIL1 "Uncharacterized protei 0.793 0.464 0.363 4e-81
FB|FBgn0000146 aub "aubergine" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 793 (284.2 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
 Identities = 146/406 (35%), Positives = 243/406 (59%)

Query:     2 PTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTIIGKE-----MK 56
             P WT+  YR+DF P  +   ++R  L +HK  +G Y+FDGT MF  N     +     ++
Sbjct:   124 PNWTIYQYRVDFTPDVEATRLRRSFLYEHKGILGGYIFDGTNMFCINQFKAVQDSPYVLE 183

Query:    57 LMSKKRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKED 116
             L++K R    +E+ I+ V  ++  DA+  Q+ N+++R+ +  LDLKL+ R Y+DP AK +
Sbjct:   184 LVTKSRAGENIEIKIKAVGSVQSTDAEQFQVLNLILRRAMEGLDLKLVSRYYYDPQAKIN 243

Query:   117 IPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQ 176
             +  +R+++WPG+ TS+RQ ENDI+LC E+ HKV+R ET+ +       D   Y   F+  
Sbjct:   244 LENFRMQLWPGYQTSIRQHENDILLCSEICHKVMRTETLYNILSDAIRDSDDYQSTFKRA 303

Query:   177 MTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIV 236
             +   ++LT YNNKTYR+DD+ +  TP   F      +SY+DYY+K+YN  IR+  QP+++
Sbjct:   304 VMGMVILTDYNNKTYRIDDVDFQSTPLCKFKTNDGEISYVDYYKKRYNIIIRDLKQPLVM 363

Query:   237 HKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVF 296
              +   + +R G  + I ++PEL   TG++D MRADFR ++ + E TR+ P  R+ +  +F
Sbjct:   364 SRPTDKNIRGGNDQAIMIIPELARATGMTDAMRADFRTLRAMSEHTRLNPDRRIERLRMF 423

Query:   297 RKRIEN-SEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTR 355
              KR+++  ++ E LK W + LD+ L  +   +LPP+ I+F +  K F     A+WT   R
Sbjct:   424 NKRLKSCKQSVETLKSWNIELDSALVEIPARVLPPEKILFGNQ-KIFVCDARADWTNEFR 482

Query:   356 S-SVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRP 400
             + S+F+  ++ RW V+T    + +T+ F+Q+  + A  M+  +  P
Sbjct:   483 TCSMFKNVHINRWYVITPSRNLRETQEFVQMCIRTASSMKMNICNP 528
GO:0048477 "oogenesis" evidence=IMP;TAS
GO:0046843 "dorsal appendage formation" evidence=IMP
GO:0017145 "stem cell division" evidence=ISS
GO:0007282 "cystoblast division" evidence=ISS
GO:0046011 "regulation of oskar mRNA translation" evidence=TAS
GO:0046012 "positive regulation of oskar mRNA translation" evidence=NAS;TAS
GO:0043186 "P granule" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0006446 "regulation of translational initiation" evidence=ISS
GO:0007279 "pole cell formation" evidence=IGI
GO:0030717 "karyosome formation" evidence=TAS
GO:0046594 "maintenance of pole plasm mRNA location" evidence=TAS
GO:0001556 "oocyte maturation" evidence=IMP
GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=IMP
GO:0016246 "RNA interference" evidence=IMP;TAS
GO:0006342 "chromatin silencing" evidence=IMP
GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP
GO:0007318 "pole plasm protein localization" evidence=IMP
GO:0003723 "RNA binding" evidence=IDA
GO:0010529 "negative regulation of transposition" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0071011 "precatalytic spliceosome" evidence=IDA
GO:0000398 "mRNA splicing, via spliceosome" evidence=IC
GO:0071013 "catalytic step 2 spliceosome" evidence=IDA
GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP
GO:0035282 "segmentation" evidence=IGI
GO:0034584 "piRNA binding" evidence=IDA
GO:0007076 "mitotic chromosome condensation" evidence=IMP
FB|FBgn0004872 piwi "piwi" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030813-2 piwil1 "piwi-like 1 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96J94 PIWIL1 "Piwi-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFQ4 PIWIL1 "Piwil1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A6N7Y9 PIWIL1 "Piwi-like protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXZ3 PIWIL1 "Piwi-like protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NH47 PIWIL1 "Piwi-like protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BJC4 PIWIL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDI9 PIWIL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
cd04658 448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 4e-44
cd02845117 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf 8e-44
smart00949138 smart00949, PAZ, This domain is named PAZ after th 4e-40
pfam02170114 pfam02170, PAZ, PAZ domain 2e-26
smart00950 301 smart00950, Piwi, This domain is found in the prot 8e-16
pfam02171 296 pfam02171, Piwi, Piwi domain 4e-12
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 9e-10
cd02844135 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfam 1e-08
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 2e-06
cd02843122 cd02843, PAZ_dicer_like, PAZ domain, dicer_like su 3e-05
cd04657 426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 5e-04
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information 
 Score =  160 bits (408), Expect = 4e-44
 Identities = 81/293 (27%), Positives = 131/293 (44%), Gaps = 64/293 (21%)

Query: 273 RLMKPLGEITRVRPRERVAKFNVFRKRIE-NSEAKEVLKRWELALDTNLARVQGHILPPD 331
            LMK L E T++ P+ER      F +RI+ N   +E+LK+W + LD+N  ++QG +LPP+
Sbjct: 1   NLMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPE 60

Query: 332 SIIFSDPLKPFPVGPDANWTTPTRS-SVFRAPNLERWCVLTTGFMMADTENFLQLINKAA 390
            II  +         +A+W    R+  ++ A NL  W ++       + E+FLQ + + A
Sbjct: 61  QIIMGN--VFVYANSNADWKREIRNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVA 118

Query: 391 QGMRFKVNRPNVIV---------------------------------------KK----- 406
             M  +++ P +I                                        KK     
Sbjct: 119 GPMGIQISPPKIIKVKDDRIETYIRALKDAFRSDPQLVVIILPGNKKDLYDAIKKFCCVE 178

Query: 407 -----------NLASKGAL-TIATKVAIQLCCKIGGAPWSVAVP---LKGLMVLGFDVTH 451
                       L  K  L +IA+K+A+Q+  K+GG PW+V +P   LK  M++G DV H
Sbjct: 179 CPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIPPFILKNTMIVGIDVYH 238

Query: 452 DSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNEL-SNDIAVSVVHALHKYR 503
           D+  K  S    VAS++  ++ WFS+      G E   + +  S+  AL  Y+
Sbjct: 239 DTITKKKSVVGFVASLNKSITKWFSKYISQVRGQEEIIDSLGKSMKKALKAYK 291

This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 448
>gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|239210 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfamily Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|239209 cd02843, PAZ_dicer_like, PAZ domain, dicer_like subfamily Back     alignment and domain information
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 504
KOG1042|consensus 845 100.0
PLN03202 900 protein argonaute; Provisional 100.0
KOG1041|consensus 876 100.0
cd04658 448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd04657 426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd02826 393 Piwi-like Piwi-like: PIWI domain. Domain found in 99.96
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.92
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.86
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.81
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.81
PF02171 302 Piwi: Piwi domain; InterPro: IPR003165 This domain 99.77
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.69
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.42
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 99.35
cd04659 404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 99.33
COG1431 685 Argonaute homolog, implicated in RNA metabolism [T 91.5
>KOG1042|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-104  Score=793.15  Aligned_cols=503  Identities=39%  Similarity=0.790  Sum_probs=480.0

Q ss_pred             CCCcceEEEEEEecCCCCChhHHHHHHHHhhhccc-ceEeeceeeecccccCCceeEEeeecCCCceEEEEEEEEEeecc
Q psy2224           1 MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIG-AYVFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEY   79 (504)
Q Consensus         1 ~p~~~~y~Y~V~i~p~~~~~~~~~~i~~~~~~~~~-~~~~Dg~~lys~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~~~~   79 (504)
                      +|+|.||||+|+|+|.++++++|.++|.+|.++.| .++|||..||.+++++.+..+++++++++..++++|++++++..
T Consensus       107 ~p~w~iyqYhVef~P~ves~rlR~~~L~~h~~lig~~~~FDG~iLfl~~k~eq~~tel~~ks~~ge~i~I~ik~~~~~~~  186 (845)
T KOG1042|consen  107 RPDWSIYQYHVEFEPDVESRRLREALLYNHTDLIGKGYAFDGTILFLKEKFEQKQTELVSKSRDGELIKITIKLTNELPS  186 (845)
T ss_pred             CCCcEEEEEEEeeccccccHHHHHHHHHHhHhhhccceeecceeehhhHHHhhhhheeecccCCCceEEEEEEEeccccC
Confidence            58999999999999999999999999999999999 99999999999999999988999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHhhhhhcCceeccccccCCCCCCcCCCCceeEecceeeEEeccCCeeEEEEeccccccchhhHHHHH
Q psy2224          80 GDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAW  159 (504)
Q Consensus        80 ~~~~~~q~lniil~~~~~~~~~~~~Gr~ff~~~~~~~i~~~glei~~G~~~svr~~~~~l~lniD~~~~~f~~~~ll~~i  159 (504)
                      ++++++|++|+|+|+.+..+++.++||+||+|.++.+++++.+++|+||.+|||..|..++|+.|++||+.++++++|+|
T Consensus       187 t~p~~iqv~NlI~RR~~k~L~L~qigRnyynp~~~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKvmR~ETvy~~m  266 (845)
T KOG1042|consen  187 TDPQCIQVFNLILRRSMKGLNLTQIGRNYYDPRAKIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKVMRTETVYDIM  266 (845)
T ss_pred             CChhHHHHHHHHHHHHHhhccHHHhhhccCCCCcccccccccceecCcchhHHHHhhhceeeehhhhhhHhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcChhhHHHHHHHhhcccEEEEeeCCeEEEEeccccCCCCCcccccCCccccHHHHHHHhcCccccCCCCceEEeec
Q psy2224         160 EQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKS  239 (504)
Q Consensus       160 ~~~~~~~~~~~~~~~~~L~gl~V~~~y~~r~~rI~~i~~~~~~~~~F~~~~~~isv~eYf~~~Y~i~L~~p~~Plv~~~~  239 (504)
                      .++.++++++++.+++.+.|+.|.|+||||+|||++|+|+.+|.++|.++|++||+.|||+++|||+|++-+||+|++.+
T Consensus       267 ~~~~~~~~~~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~dgeIs~veYyk~qYni~I~dl~QPlliS~~  346 (845)
T KOG1042|consen  267 RSCQHNTQRFQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDDGEISFVEYYKKQYNIEITDLNQPLLISEP  346 (845)
T ss_pred             HHHhhCHHHHHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecCceeeHhHHHHHhcCeEEeeCCcceEeccC
Confidence            99999888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcceEEeccccccccCCChhhhhchhhhHHHHHHhcCCHHHHHHHHHHHHHHhc-ChHHHHHhcccceEeec
Q psy2224         240 KLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIE-NSEAKEVLKRWELALDT  318 (504)
Q Consensus       240 ~~~~~~~~~~~~~~lP~Elc~i~gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i~~~~~~l~-~~~~~~~l~~~Gl~i~~  318 (504)
                      ++|..+++....++++||||+++||+|+||+||++||+++.+|+++|.+|..++..+..+|. +.+....|+.|||+++.
T Consensus       347 k~K~~~g~~~q~~~lIPELc~~TGLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~  426 (845)
T KOG1042|consen  347 KDKRPKGEPPQLAMLIPELCFLTGLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDS  426 (845)
T ss_pred             cccCCCCCCccceeeehhhhhccCCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCc
Confidence            88766666788999999999999999999999999999999999999999999999999999 88889999999999999


Q ss_pred             ceeEEEEEEeCCCeeecCCCCCCCCCCCCCCCcccccc-ccccCCCCCeEEEEEeCCChHHHHHHHHHHHHhhcccceec
Q psy2224         319 NLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRS-SVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKV  397 (504)
Q Consensus       319 ~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g~W~~~~~~-~~~~~~~~~~w~vv~~~~~~~~~~~f~~~l~~~~~~~G~~i  397 (504)
                      +.++|+||+|++.+|.+++... ...+..++|.+++|. +++....+++|++++++++..+++.|++.|.+.+..+||++
T Consensus       427 ~l~~v~gRil~sEkI~~~~~~~-~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~~a~~fi~~l~r~a~~mgm~i  505 (845)
T KOG1042|consen  427 NLAEVQGRILPSEKILFGNQKV-PYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNSEAQEFINMLRRVASSMGMQI  505 (845)
T ss_pred             chhhccceecCccceecCCccc-CCCcchhhhhhhcccccccccCCCcceEEEecCccHHHHHHHHHHHHHhccccceec
Confidence            9999999999999999999873 224666999999999 99999999999999999999999999999999999999999


Q ss_pred             cCCeE--------------------------------------------------EEeccc-----ccC-CchhHHHHHH
Q psy2224         398 NRPNV--------------------------------------------------IVKKNL-----ASK-GALTIATKVA  421 (504)
Q Consensus       398 ~~P~~--------------------------------------------------V~~q~~-----~k~-~~~~~~~ni~  421 (504)
                      ..|.+                                                  |++||+     .++ ...+++++|+
T Consensus       506 ~~P~~v~i~ddr~~tYvraiqq~v~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~  585 (845)
T KOG1042|consen  506 REPICVEIKDDRPGTYVRAIQQVVGADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIA  585 (845)
T ss_pred             CCceEEEeCCCChHHHHHHHHHhccCCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHH
Confidence            98876                                                  555554     344 4789999999


Q ss_pred             HHHHhhhCCCceeeecCCCCeEEEEEEEeeCCCCCCceEEEEEEeeCCCCceeeeEeeecCCCcchHHhHHHHHHHHHhh
Q psy2224         422 IQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHK  501 (504)
Q Consensus       422 lKiN~KlGG~n~~l~~p~~~tmiiG~DV~Hp~~~~~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~L~~  501 (504)
                      +||||||||.+|.|++|++.+|+||+||+|.+..+..|++|||||+|..+++|+|.+..|.+++|+.+.|..+|..||++
T Consensus       586 lQmnCKlGg~lW~V~IPLk~lMiVG~Dv~hd~~~k~rsvga~VAs~n~~~tr~fS~v~~~~~~qel~d~L~~~~~~ALr~  665 (845)
T KOG1042|consen  586 LQMNCKLGGELWKVEIPLKGLMIVGFDVYHDPTLKGRSVGAFVASMNNDFTRWFSRVIEQENGQELADNLKVFLAKALRQ  665 (845)
T ss_pred             HHHhhhhcCcceEEeeecccceEEEEEeecCccccCceEEEEEEeeccchhhhhhheecccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             hhC
Q psy2224         502 YRV  504 (504)
Q Consensus       502 ~~~  504 (504)
                      |++
T Consensus       666 y~~  668 (845)
T KOG1042|consen  666 YYE  668 (845)
T ss_pred             HHH
Confidence            974

>PLN03202 protein argonaute; Provisional Back     alignment and domain information
>KOG1041|consensus Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
2xfm_A150 Complex Structure Of The Miwi Paz Domain Bound To M 2e-25
2l5c_A134 Solution Structures Of Human Piwi-Like 1 Paz Domain 6e-25
3qir_A148 Crystal Structure Of Piwil2 Paz Domain Length = 148 4e-20
3o6e_X124 Crystal Structure Of Human Hiwi1 Paz Domain (Residu 5e-20
3o3i_X124 Crystal Structure Of Human Hiwi1 Paz Domain (Residu 5e-20
3o7v_X124 Crystal Structure Of Human Hiwi1 (V361m) Paz Domain 8e-20
3o7x_A140 Crystal Structure Of Human Hili Paz Domain Length = 3e-19
2yhb_A 437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 4e-05
2yha_A 388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 6e-05
>pdb|2XFM|A Chain A, Complex Structure Of The Miwi Paz Domain Bound To Methylated Single Stranded Rna Length = 150 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 151 RKETVLD----AWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTF 206
           R ETVLD     ++Q    K+    +   ++   IVLTKYNNKTYRVDDI +D  P STF
Sbjct: 1   RSETVLDFMFNLYQQTEEHKF--QEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTF 58
Query: 207 P-MKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQ-SEIIYLVPELCYLTGL 264
               G  VS+++YY+K+YN+ I +  QP++V + K R    G       L+PELCYLTGL
Sbjct: 59  KKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTGL 118
Query: 265 SDDMRADFRLMKPLGEITRVRPRER 289
           +D MR DF +MK L   TR+ P +R
Sbjct: 119 TDKMRNDFNVMKDLAVHTRLTPEQR 143
>pdb|2L5C|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain Length = 134 Back     alignment and structure
>pdb|3QIR|A Chain A, Crystal Structure Of Piwil2 Paz Domain Length = 148 Back     alignment and structure
>pdb|3O6E|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues 277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt Overhang) Containing 2'-Och3 At Its 3'-End Length = 124 Back     alignment and structure
>pdb|3O3I|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues 277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt Overhang) Containing 2'-Oh At Its 3'-End Length = 124 Back     alignment and structure
>pdb|3O7V|X Chain X, Crystal Structure Of Human Hiwi1 (V361m) Paz Domain (Residues 277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt Overhang) Containing 2'-Och3 At Its 3'-End Length = 124 Back     alignment and structure
>pdb|3O7X|A Chain A, Crystal Structure Of Human Hili Paz Domain Length = 140 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 6e-90
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 2e-68
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 2e-61
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 2e-57
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 1e-16
3qir_A148 PIWI-like protein 2; structural genomics consortiu 8e-45
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 7e-44
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 2e-39
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 3e-24
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-14
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 2e-18
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 1e-13
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 7e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 4e-06
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
 Score =  288 bits (738), Expect = 6e-90
 Identities = 65/557 (11%), Positives = 135/557 (24%), Gaps = 102/557 (18%)

Query: 2   PTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTMMFTPNTI-IGKEMKLMSK 60
                    +  +PP     V   L +  +   G  V  G  + + +   +      +++
Sbjct: 22  EELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLAR 81

Query: 61  KRDETPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGR--NYFDPAAKEDIP 118
                   L  +  R L+  D     + + L R+ L+    +L G          +E   
Sbjct: 82  MGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHAR 141

Query: 119 QYRLEVWPGWDTSMRQ-MENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQM 177
                V  G    +        +L V+ ++++L + ++     Q                
Sbjct: 142 GPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPL------------ 189

Query: 178 TNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVH 237
               V   Y+ +T+ +  +          P+    +S +DY+  K     R   +   V 
Sbjct: 190 -PKRVRNAYDRRTWELLRL--GEEDPKELPL-PGGLSLLDYHASKGRLQGREGGRVAWVA 245

Query: 238 KSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFR 297
             K          I +L   L  +  L D    +  L         +   ER        
Sbjct: 246 DPKDPRKP-----IPHLTGLLVPVLTLEDLHEEEGSLA------LSLPWEERR------- 287

Query: 298 KRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRSS 357
            R     A  + +R  L     + R Q + L    ++              +        
Sbjct: 288 -RRTREIASWIGRRLGLGTPEAV-RAQAYRLSIPKLMGRRA---------VSKPADALRV 336

Query: 358 VFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNVI-------------- 403
            F         +L         E   + + +A       +    +               
Sbjct: 337 GFYRAQETALALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALR 396

Query: 404 ------------------------VKKNLASKGALT-------------IATKVAIQLCC 426
                                   +K  L  +G  +                   + L  
Sbjct: 397 KAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLA 456

Query: 427 KIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNE 486
           K G    +++      + +GFD       +       V      +               
Sbjct: 457 KAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGDGGHLLWTLPEA--QAGERI 514

Query: 487 LSNDIAVSVVHALHKYR 503
               +   +   L  +R
Sbjct: 515 PQEVVWDLLEETLWAFR 531
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
3qir_A148 PIWI-like protein 2; structural genomics consortiu 100.0
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 99.98
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 99.96
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 99.96
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 99.95
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 99.89
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 99.86
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 99.75
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 99.62
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.47
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.43
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.41
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 99.41
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.37
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=6.4e-90  Score=761.14  Aligned_cols=484  Identities=18%  Similarity=0.324  Sum_probs=408.0

Q ss_pred             CCcceEEEEEEecCCCCChhHHHHHHHHhh-----hccc--ceEeec-eeeecccccCCce--eEEeee-c--CCCceEE
Q psy2224           2 PTWTLNLYRIDFNPPEDIMGVKRGLLRDHK-----DKIG--AYVFDG-TMMFTPNTIIGKE--MKLMSK-K--RDETPVE   68 (504)
Q Consensus         2 p~~~~y~Y~V~i~p~~~~~~~~~~i~~~~~-----~~~~--~~~~Dg-~~lys~~~l~~~~--~~~~~~-~--~~~~~~~   68 (504)
                      |++.+|||||+|.|+.++++++++|++.+.     +.||  .++||| ++|||+.+|+...  .++.+. +  .+++.|+
T Consensus        52 ~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~~~~~~~~  131 (861)
T 4f3t_A           52 PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFK  131 (861)
T ss_dssp             CSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEESSCCSCSSCEEEEECCC-------CEE
T ss_pred             CCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEECCcCCCCCcceEEEEecCCCCCCcEEE
Confidence            677899999999999999999998877432     4576  469999 8999999998643  344332 1  2356799


Q ss_pred             EEEEEEEeeccC-------------ChhhHHHHHHHHHhhhhhcCceeccccccCCCCCCcCC-CCceeEecceeeEEec
Q psy2224          69 LTIRHVRVLEYG-------------DAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIP-QYRLEVWPGWDTSMRQ  134 (504)
Q Consensus        69 v~i~~~~~~~~~-------------~~~~~q~lniil~~~~~~~~~~~~Gr~ff~~~~~~~i~-~~glei~~G~~~svr~  134 (504)
                      |+|+++++++++             .++++|+||+|+|+. .+.++..+||+||++......+ ++|+|+|+||++|||+
T Consensus       132 V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~-~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~  210 (861)
T 4f3t_A          132 VSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHL-PSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRP  210 (861)
T ss_dssp             EEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHH-HHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEE
T ss_pred             EEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhh-ccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEe
Confidence            999999999874             368999999999995 4567899999999876543332 7899999999999999


Q ss_pred             cCCeeEEEEecccccc-chhhHHHHHHHHhcC----------hhhHHHHHHHhhcccEEEEee---CCeEEEEeccccCC
Q psy2224         135 MENDIMLCVELSHKVL-RKETVLDAWEQCRND----------KYFYYRKFEAQMTNSIVLTKY---NNKTYRVDDIQYDV  200 (504)
Q Consensus       135 ~~~~l~lniD~~~~~f-~~~~ll~~i~~~~~~----------~~~~~~~~~~~L~gl~V~~~y---~~r~~rI~~i~~~~  200 (504)
                      ++++++||+|+++++| ++++|+|++.++.+.          .+..+.++.++|+|++|.++|   ++|+|+|.+|++..
T Consensus       211 ~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~p  290 (861)
T 4f3t_A          211 SLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRP  290 (861)
T ss_dssp             CSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEE
T ss_pred             cCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCC
Confidence            9999999999999976 689999999987531          234678899999999999999   57999999999877


Q ss_pred             CCCccccc--CCc---cccHHHHHHHhcCccccCCCCceEEeecccccccCCCcceEEecccccccc-------CCChhh
Q psy2224         201 TPCSTFPM--KGE---NVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLT-------GLSDDM  268 (504)
Q Consensus       201 ~~~~~F~~--~~~---~isv~eYf~~~Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~-------gl~~~~  268 (504)
                      ++..+|..  ++|   ++||+|||+++||++|+||+||||+++++        .+.+|||||||.|+       ||+++|
T Consensus       291 a~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~--------~~~~ylP~Elc~i~~gQ~~~~~Lt~~q  362 (861)
T 4f3t_A          291 ASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQE--------QKHTYLPLEVCNIVAGQRCIKKLTDNQ  362 (861)
T ss_dssp             TTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCT--------TTTEEEEGGGEEECTTCBCCSCCCHHH
T ss_pred             CCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCC--------CCCccccceeEEeeCCccccccCCHHH
Confidence            77788963  222   79999999999999999999999999866        36799999999998       788888


Q ss_pred             hhchhhhHHHHHHhcCCHHHHHHHHHHHHHHhcChHHHHHhcccceEeecceeEEEEEEeCCCeeecCCCCCCCCCCCCC
Q psy2224         269 RADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDA  348 (504)
Q Consensus       269 ~~~~~~~k~~~~~~~~~P~~r~~~i~~~~~~l~~~~~~~~l~~~Gl~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g  348 (504)
                      +++      +++.++..|.+|.+.|.++++.++ .+.+++|++|||+|+++|++|+||+||||+|.|+++......+.+|
T Consensus       363 ~s~------mik~~~~~P~~R~~~I~~~~~~l~-~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g  435 (861)
T 4f3t_A          363 TST------MIRATARSAPDRQEEISKLMRSAS-FNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQG  435 (861)
T ss_dssp             HHH------HHHHHCCCHHHHHHHHHHHHHHHC-GGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTT
T ss_pred             HHH------HHHHHccCHHHHHHHHHHHHHHhc-CCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCC
Confidence            874      556788999999999999999987 3345799999999999999999999999999999764322357789


Q ss_pred             CCcccccc-ccccCCCCCeEEEEEeCC----ChHHHHHHHHHHHHhhcccceeccC-CeE--------------------
Q psy2224         349 NWTTPTRS-SVFRAPNLERWCVLTTGF----MMADTENFLQLINKAAQGMRFKVNR-PNV--------------------  402 (504)
Q Consensus       349 ~W~~~~~~-~~~~~~~~~~w~vv~~~~----~~~~~~~f~~~l~~~~~~~G~~i~~-P~~--------------------  402 (504)
                      +|+  +++ +|++++++++|++++++.    +.+.++.|++.|.+.|+.+||.+.. |..                    
T Consensus       436 ~W~--~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~  513 (861)
T 4f3t_A          436 VWD--MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNT  513 (861)
T ss_dssp             BCC--CTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECCSSSSHHHHHHHHHHH
T ss_pred             cee--ccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecCchHHHHHHHHHHHhh
Confidence            999  899 999999999999999752    3567999999999999999999964 422                    


Q ss_pred             ------------------------------EEecccccC----CchhHHHHHHHHHHhhhCCCceeeec---C---CCCe
Q psy2224         403 ------------------------------IVKKNLASK----GALTIATKVAIQLCCKIGGAPWSVAV---P---LKGL  442 (504)
Q Consensus       403 ------------------------------V~~q~~~k~----~~~~~~~ni~lKiN~KlGG~n~~l~~---p---~~~t  442 (504)
                                                    |+|||+..+    ..+|++.||+||||+||||+||.+..   |   ..+|
T Consensus       514 ~~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~~~~~~~~~~t  593 (861)
T 4f3t_A          514 YAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPV  593 (861)
T ss_dssp             STTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECSTTSCGGGGSCE
T ss_pred             cCCCcEEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceeccccccccccCCce
Confidence                                          788887532    46899999999999999999998852   2   3799


Q ss_pred             EEEEEEEeeCCCC--CCceEEEEEEeeCCCCceeeeEeeecCCCcchHHhHHHHHHHHHhhhh
Q psy2224         443 MVLGFDVTHDSDL--KGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYR  503 (504)
Q Consensus       443 miiG~DV~Hp~~~--~~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~L~~~~  503 (504)
                      ||||+||+||+++  +.|||||||||+|.++++|++.+++|.+++|+|++|++|+.++|++|+
T Consensus       594 miiG~DV~H~~~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~L~~~~  656 (861)
T 4f3t_A          594 IFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFY  656 (861)
T ss_dssp             EEEEEEEECCC----CCCEEEEEEEECSSSSCCEEEEEEEESTTCCSCTTHHHHHHHHHHHHH
T ss_pred             EEEEEEecccCCCCCCCceEEEEEEEcCCCcceEEEEEEEcCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999999986  579999999999999999999999999999999999999999999986
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 504
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 2e-93
d1w9ha1 316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 2e-19
d1yvua2 392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 2e-18
d1u04a2 447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 1e-15
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 2e-15
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 0.002
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  285 bits (730), Expect = 2e-93
 Identities = 46/324 (14%), Positives = 109/324 (33%), Gaps = 38/324 (11%)

Query: 6   LNLYRIDFNPPEDIMGVKRGLLRDHKDKIG-AYVFDGTMMFTPNTIIGKEMKLMSKKRDE 64
           + +YR+  +P E++      + R   + +G     +  ++ T             +   E
Sbjct: 20  IYVYRLFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIATTK-----------ELEYE 68

Query: 65  TPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEV 124
                           D Q   +  +L    +   +L  L R +  P           +V
Sbjct: 69  GEFIPEGEISFSELRNDYQSKLVLRLLKENGIGEYELSKLLRKFRKPKTF-----GDYKV 123

Query: 125 WPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRND-----------KYFYYRKF 173
            P  + S+ + + D  L + + H++   +T+ +   +   +                   
Sbjct: 124 IPSVEMSVIKHDEDFYLVIHIIHQIQSMKTLWELVNKDPKELEEFLMTHKENLMLKDIAS 183

Query: 174 EAQMTNSIVLTKYNNKTYRVD---DIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNR 230
             +        +Y  K         ++Y               + +++Y+K     +   
Sbjct: 184 PLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWNTPE-AKLEFYRKFGQVDL--- 239

Query: 231 NQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERV 290
            QP I+ K    +++  ++  IYL+P+L   T  ++ + +D  + K + E T++ P ER 
Sbjct: 240 KQPAILAKFA-SKIKKNKNYKIYLLPQLVVPTYNAEQLESD--VAKEILEYTKLMPEERK 296

Query: 291 AKFNVFRKRIENSEAKEVLKRWEL 314
                    +++    + L   E+
Sbjct: 297 ELLENILAEVDSDIIDKSLSEIEV 320
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.86
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.85
d1u04a2 447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.81
d1yvua2 392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 99.74
d1w9ha1 316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 99.73
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7.1e-51  Score=386.63  Aligned_cols=276  Identities=16%  Similarity=0.188  Sum_probs=222.2

Q ss_pred             CCcceEEEEEEecCCCCChhHHHHHHHHhhhccc-ceEeeceeeecccccCCceeEEeeecCCCceEEEEEEEEEeeccC
Q psy2224           2 PTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIG-AYVFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEYG   80 (504)
Q Consensus         2 p~~~~y~Y~V~i~p~~~~~~~~~~i~~~~~~~~~-~~~~Dg~~lys~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~   80 (504)
                      |+ .+|+|+|+|+|+++++++|..+++.|.+..| .++|||..||++.+|+.+.           ++.++++...+....
T Consensus        17 p~-~lyqYrV~f~P~~e~~~~r~~ll~~h~~~~G~~~~fDg~~l~~~kkL~~~~-----------e~~~~~~~~~~~~~~   84 (322)
T d1u04a1          17 PD-KIYVYRLFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIATTKELEYEG-----------EFIPEGEISFSELRN   84 (322)
T ss_dssp             CS-CEEEEEC------------CCHHHHHHHTTEEEEETTTTEEEESSCCCCSS-----------CCEEEEEECGGGSCH
T ss_pred             Cc-eeEEEEecCCChhhhHHHHHHHHHHHHHhcCeEEecCCcEEecccccCcce-----------eEEEEEEEEcccCCC
Confidence            55 5999999999999999999999999999999 8889999999999997552           234566666666667


Q ss_pred             ChhhHHHHHHHHHhhhhhcCceeccccccCCCCCCcCCCCceeEecceeeEEeccCCeeEEEEeccccccchhhHHHHHH
Q psy2224          81 DAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWE  160 (504)
Q Consensus        81 ~~~~~q~lniil~~~~~~~~~~~~Gr~ff~~~~~~~i~~~glei~~G~~~svr~~~~~l~lniD~~~~~f~~~~ll~~i~  160 (504)
                      +.+++|++|+++|.++...++..+||+||+|...     +.+++||||.+||+..+++++||+|++|++.+.+||+|+|.
T Consensus        85 ~~~~~q~~Nil~r~~m~~l~l~~iGRnyydp~~~-----~~levwPGy~TSI~q~E~~ilLc~disHKVmR~~Tvld~l~  159 (322)
T d1u04a1          85 DYQSKLVLRLLKENGIGEYELSKLLRKFRKPKTF-----GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQSMKTLWELVN  159 (322)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHTTTSCCEEE-----TTEEEEEEEEEEEEECSSCEEEEEEEEEEEEESSCHHHHTT
T ss_pred             cHHHHHHHHHHHHHHhhhcceeeeccccCCCCCc-----cceEEcCCeeeeehhhcCceEEEEEeeeeEeehhhHHHHHH
Confidence            7899999999999999999999999999998864     35899999999999999999999999999999999999998


Q ss_pred             HHhcChhh-----------HHHHHHHhhcccEEEEeeCCeEEEEe---ccccCCCCCcccccCCccccHHHHHHHhcCcc
Q psy2224         161 QCRNDKYF-----------YYRKFEAQMTNSIVLTKYNNKTYRVD---DIQYDVTPCSTFPMKGENVSYIDYYQKKYNET  226 (504)
Q Consensus       161 ~~~~~~~~-----------~~~~~~~~L~gl~V~~~y~~r~~rI~---~i~~~~~~~~~F~~~~~~isv~eYf~~~Y~i~  226 (504)
                      ++.+..++           ++..+.+.|.|..|.|+||||+|+++   +++|+.+|.++|..+ +.+|+.|||+++||+ 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~k~lvG~iVLT~YNNkTy~~di~~dvd~~~~p~~t~~~~-~~~s~ieYYk~~Yni-  237 (322)
T d1u04a1         160 KDPKELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWN-TPEAKLEFYRKFGQV-  237 (322)
T ss_dssp             TCHHHHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCBCEECCHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHCSC-
T ss_pred             HHHHhhhhhhhhhhhhhHHHHhhhhhheeceEEEeccCCcceecchhhcCCcccCccceeccC-CcccHHHHHHHhcCC-
Confidence            77542222           23345667899999999999998766   678888888888654 467999999999998 


Q ss_pred             ccCCCCceEEeecccccccCCCcceEEeccccccccCCChhhhhchhhhHHHHHHhcCCHHHHHHHHHHHHHHhc
Q psy2224         227 IRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIE  301 (504)
Q Consensus       227 L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i~~~~~~l~  301 (504)
                        +.+||+++++.+++ .++|.+..+||+||||+++||+|+||+|  +||+++.+|+++|.+|.+.+.+|++++.
T Consensus       238 --D~~QPlLvs~~k~~-~~~~~~~~i~LiPELc~lTGltD~mR~d--lMk~la~~Trl~P~~R~~~l~~f~~~l~  307 (322)
T d1u04a1         238 --DLKQPAILAKFASK-IKKNKNYKIYLLPQLVVPTYNAEQLESD--VAKEILEYTKLMPEERKELLENILAEVD  307 (322)
T ss_dssp             --CTTSCEEEEEESCC------CCCEEECTTTEEEEEEGGGC------CCHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_pred             --CCCCceEEEecccc-cCCCCceEEEEchHhhhhcCCcHHHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence              67899999988765 3445578899999999999999999998  8999999999999999999999999987
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure