Psyllid ID: psy2238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccEEcccccccccccccccccEEEcccccEEEEcccccEEcccHHHHHcccccccEEccccccccccccccccccccccccccEEcccccEEEEccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHcccHHHHccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcHHHHHHHHHHHcccccHHcccEEEEEccccEEEEccccEcccHHHHHHHHcccHHHHHcccHHcccccccccccccEEEEHcccccccccEEEEEccccccccccccccEccccEEEEccccccccHcccccccEEEEEEEEccHHHHcccEEEcccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpkkktgqrKKAEKMKLRQKEIRSARdkmsvaefpcnanmecdkckrkqknrafcyfcqsvqrlpqcghcgkikcmlktgdcvikhagvfstgmgMVGAICDFCEAWichgrkclqthactcplqdavCLECErgvwdhggrvykccfcegflceddqfehQASCQvlesenykckscnklgqysclrckicfcedharrkgfkyeknkpipcpkcgfetsqtkdlsmstrshkfgrqqlngddyddedddydvgggysgfsyggggatnsrshkfgrqqlngddyddedddydvgggysgfsyggggatn
Flexible Loop (DISEMBL)
mpkkktgqrkkaekmklrqkeirsardkmsvaefpcnanmecdKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKgfkyeknkpipcpkcgfetsqtkdlsmstrshkfgrqqlngddyddEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGGYSgfsyggggatn
Low Complexity Region (SEG)
MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNgddyddedddydvgggysgfsyggggATNSRSHKFGRQQLNgddyddedddydvgggysgfsyggggATN
Disordered region (IsUnstruct)
*********************************FPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKC***********************************************************************************************
Disordered Region (DISOPRED)
*******************************AEFPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRK*********IPCPKCGFETSQTK*****T*********************YDVGGGYSGFSYGGGGATNSR********************YDVGGGYSGFSY*******
Disordered Region (DISEMBL)
****************************MSVAEFPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATN
Disordered Region (DISPRO)
********************EIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ***********DDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSY*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q9VAU9	315	Zinc finger protein 330 h	yes	N/A	0.790	0.780	0.806	1e-118
Q32LC9	320	Zinc finger protein 330 O	yes	N/A	0.839	0.815	0.680	1e-105
Q5R9D9	320	Zinc finger protein 330 O	yes	N/A	0.810	0.787	0.704	1e-105
Q9Y3S2	320	Zinc finger protein 330 O	yes	N/A	0.810	0.787	0.704	1e-105
O70524	317	Zinc finger protein 330 O	yes	N/A	0.810	0.794	0.700	1e-105
Q922H9	316	Zinc finger protein 330 O	yes	N/A	0.765	0.753	0.731	1e-104

>sp|Q9VAU9|ZN330_DROME Zinc finger protein 330 homolog OS=Drosophila melanogaster GN=Noa36 PE=1 SV=1

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/248 (80%), Positives = 224/248 (90%), Gaps = 2/248 (0%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQRKKAEK KLR KEIRS   ++ +A+ PCNA MECDKC++KQK+RAFCYFCQS
Sbjct: 1   MPKKKTGQRKKAEKQKLRLKEIRSR--EVPLADLPCNAPMECDKCEKKQKSRAFCYFCQS 58

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           +QRLP C  CGKIKCMLKTGDCV+KH GV++TG+GMVGAICDFCEAW+CHGRKCLQ HAC
Sbjct: 59  IQRLPICAQCGKIKCMLKTGDCVVKHPGVYTTGLGMVGAICDFCEAWVCHGRKCLQNHAC 118

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
           TCPLQ+A CLECERGVW+HGGR++KC FC GFLCEDDQFEHQASCQVLESENYKC+SCNK
Sbjct: 119 TCPLQNATCLECERGVWEHGGRIFKCSFCNGFLCEDDQFEHQASCQVLESENYKCQSCNK 178

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQYSCLRCK C+CEDH RRKGFKY+KNKPIPCPKC ++TS TKDLSMSTRSHKFGRQQ 
Sbjct: 179 LGQYSCLRCKTCYCEDHVRRKGFKYDKNKPIPCPKCNYDTSVTKDLSMSTRSHKFGRQQQ 238

Query: 241 NGDDYDDE 248
            G+  D+E
Sbjct: 239 GGNSDDEE 246

Drosophila melanogaster (taxid: 7227)

>sp|Q32LC9|ZN330_BOVIN Zinc finger protein 330 OS=Bos taurus GN=ZNF330 PE=2 SV=1

 Score =  382 bits (981), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/269 (68%), Positives = 212/269 (78%), Gaps = 8/269 (2%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct: 1   MPKKKTGARKKAENRREREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct: 61  VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct: 121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQ+SCLRCK CFC+DH R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ  
Sbjct: 181 LGQHSCLRCKACFCDDHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ-- 238

Query: 241 NGDDYDDEDDDYD------VGGGYSGFSY 263
            G +  D    YD          Y+G SY
Sbjct: 239 TGGEEGDGASGYDAYWKNLASDKYAGASY 267

Bos taurus (taxid: 9913)

>sp|Q5R9D9|ZN330_PONAB Zinc finger protein 330 OS=Pongo abelii GN=ZNF330 PE=2 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/254 (70%), Positives = 207/254 (81%), Gaps = 2/254 (0%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct: 1   MPKKKTGARKKAENRREREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct: 61  VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct: 121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQ+SCLRCK CFC+DH R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ  
Sbjct: 181 LGQHSCLRCKACFCDDHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ-- 238

Query: 241 NGDDYDDEDDDYDV 254
            G +  D    YD 
Sbjct: 239 TGGEEGDGASGYDA 252

Pongo abelii (taxid: 9601)

>sp|Q9Y3S2|ZN330_HUMAN Zinc finger protein 330 OS=Homo sapiens GN=ZNF330 PE=1 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/254 (70%), Positives = 207/254 (81%), Gaps = 2/254 (0%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct: 1   MPKKKTGARKKAENRREREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct: 61  VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct: 121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQ+SCLRCK CFC+DH R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ  
Sbjct: 181 LGQHSCLRCKACFCDDHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ-- 238

Query: 241 NGDDYDDEDDDYDV 254
            G +  D    YD 
Sbjct: 239 TGGEEGDGASGYDA 252

Homo sapiens (taxid: 9606)

>sp|O70524|ZN330_CRIGR Zinc finger protein 330 OS=Cricetulus griseus GN=ZNF330 PE=2 SV=1

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/254 (70%), Positives = 207/254 (81%), Gaps = 2/254 (0%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct: 1   MPKKKTGPRKKAENRREREKQLRASRSTVDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct: 61  VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct: 121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQ+SCLRCK CFC++H R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ  
Sbjct: 181 LGQHSCLRCKACFCDEHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ-- 238

Query: 241 NGDDYDDEDDDYDV 254
            G +  D    YD 
Sbjct: 239 TGGEEGDGASGYDA 252

Cricetulus griseus (taxid: 10029)

>sp|Q922H9|ZN330_MOUSE Zinc finger protein 330 OS=Mus musculus GN=Znf330 PE=2 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 174/238 (73%), Positives = 202/238 (84%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct: 1   MPKKKTGARKKAENRREREKQLRASRSTVDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct: 61  VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct: 121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ 238
           LGQ+SCLRCK CFC++H R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ
Sbjct: 181 LGQHSCLRCKACFCDEHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ 238

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
91080663	291	PREDICTED: similar to Noa36 CG10009-PA [	0.836	0.893	0.805	1e-121
332376467	308	unknown [Dendroctonus ponderosae]	0.855	0.863	0.790	1e-120
307167248	325	Zinc finger protein 330-like protein [Ca	0.842	0.806	0.748	1e-119
242009202	330	conserved hypothetical protein [Pediculu	0.768	0.724	0.815	1e-119
383862036	312	PREDICTED: zinc finger protein 330 homol	0.832	0.830	0.768	1e-118
340715444	334	PREDICTED: zinc finger protein 330 homol	0.813	0.757	0.770	1e-118
380012890	346	PREDICTED: zinc finger protein 330 homol	0.874	0.786	0.717	1e-117
350414653	330	PREDICTED: zinc finger protein 330 homol	0.823	0.775	0.773	1e-117
307202196	331	Zinc finger protein 330-like protein [Ha	0.861	0.809	0.732	1e-117
194906931	317	GG12064 [Drosophila erecta] gi|190656090	0.790	0.776	0.806	1e-116

>gi|91080663|ref|XP_974713.1| PREDICTED: similar to Noa36 CG10009-PA [Tribolium castaneum] gi|270005496|gb|EFA01944.1| hypothetical protein TcasGA2_TC007558 [Tribolium castaneum]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/262 (80%), Positives = 232/262 (88%), Gaps = 2/262 (0%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQRKKAEK KLRQKEIR+A+D +S+A+ P NA MEC+KC RKQK+RAFCYFCQS
Sbjct: 1   MPKKKTGQRKKAEKQKLRQKEIRTAKDNVSLAQHPSNAAMECEKCHRKQKSRAFCYFCQS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           +QRLP C  CGKIKCMLKTGDCV+KH GV++TG GMVGAICDFCEAWICHGRKCLQTHAC
Sbjct: 61  IQRLPVCAQCGKIKCMLKTGDCVVKHPGVYTTGTGMVGAICDFCEAWICHGRKCLQTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
           TCPLQDAVC+ECERGVWDHGGR++KC FC+ FLCEDDQFEHQASCQVLESENYKC+SCNK
Sbjct: 121 TCPLQDAVCIECERGVWDHGGRLFKCSFCDNFLCEDDQFEHQASCQVLESENYKCQSCNK 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQYSCLRCK C+CEDH RRKGFKYEKNK IPCPKCG++TSQTKDLSMSTRSHKFGRQ  
Sbjct: 181 LGQYSCLRCKTCYCEDHVRRKGFKYEKNKAIPCPKCGYDTSQTKDLSMSTRSHKFGRQ-- 238

Query: 241 NGDDYDDEDDDYDVGGGYSGFS 262
               Y DEDDD     GY  ++
Sbjct: 239 GQACYYDEDDDVQESSGYGDYA 260

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376467|gb|AEE63373.1| unknown [Dendroctonus ponderosae]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/267 (79%), Positives = 241/267 (90%), Gaps = 1/267 (0%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQRKKAEK +LRQKEIR+A++ + +A+ PCN+ MEC+KC RKQK+RAFCYFCQS
Sbjct: 1   MPKKKTGQRKKAEKQRLRQKEIRTAKENVQLAQHPCNSLMECEKCHRKQKSRAFCYFCQS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           +QRLP C  CGK+KCMLKTGDCVI+HAGVF+TGM MVGAICDFCEAW+CHGRKCLQ+HAC
Sbjct: 61  IQRLPVCAQCGKMKCMLKTGDCVIRHAGVFTTGMAMVGAICDFCEAWVCHGRKCLQSHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
           TCPLQ+A CLECERGVW+HGGR+++C FC+GFLCEDDQFEHQASCQVLESENYKC+SCNK
Sbjct: 121 TCPLQEAACLECERGVWEHGGRIFRCSFCDGFLCEDDQFEHQASCQVLESENYKCQSCNK 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ-Q 239
           LGQYSCLRCK C+CEDH +RKGFKYEKNK IPCPKCG+ETSQTKDLSMSTRSHKFGRQ Q
Sbjct: 181 LGQYSCLRCKTCYCEDHVKRKGFKYEKNKGIPCPKCGYETSQTKDLSMSTRSHKFGRQGQ 240

Query: 240 LNGDDYDDEDDDYDVGGGYSGFSYGGG 266
            + DDY+   DDY   GGY+G+S G G
Sbjct: 241 ASYDDYEAGGDDYGEEGGYAGYSGGNG 267

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167248|gb|EFN60936.1| Zinc finger protein 330-like protein [Camponotus floridanus]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 196/262 (74%), Positives = 231/262 (88%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQRKKAEK KLRQKEIR+A++++ +A+FPCN+ MECDKC +KQK+RAFCYFCQS
Sbjct: 1   MPKKKTGQRKKAEKQKLRQKEIRAAKEQVDLAKFPCNSVMECDKCNKKQKSRAFCYFCQS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           +QRLP C HCGKIKCMLKTGDCV++H G+F+TG+GMV  ICD+CEAW+CHGR+CL +HAC
Sbjct: 61  IQRLPMCAHCGKIKCMLKTGDCVVRHPGIFTTGLGMVATICDYCEAWVCHGRRCLTSHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA+C ECERGVWDHGGR++KC FC+ FLCEDDQFEHQASCQVLE+EN+KC+SCN+
Sbjct: 121 ICPLTDAICQECERGVWDHGGRIFKCSFCDCFLCEDDQFEHQASCQVLEAENFKCQSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQYSCLRCK C+CEDH RRKGFKYEKNK IPCPKC +ETSQTKDLSMSTRSHKFGRQ  
Sbjct: 181 LGQYSCLRCKTCYCEDHVRRKGFKYEKNKAIPCPKCSYETSQTKDLSMSTRSHKFGRQNQ 240

Query: 241 NGDDYDDEDDDYDVGGGYSGFS 262
            G    D++++YD G   S F+
Sbjct: 241 GGPSESDDENEYDYGNQDSCFA 262

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009202|ref|XP_002425380.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509174|gb|EEB12642.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 195/239 (81%), Positives = 224/239 (93%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQRKKAEK K+RQKEIRS ++ + + +FPCN+ MECDKC+RKQKNRAFCYFCQS
Sbjct: 1   MPKKKTGQRKKAEKQKIRQKEIRSKKENLDLVKFPCNSVMECDKCERKQKNRAFCYFCQS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           +QRLP C  CGK+KCMLKTGDCV++HAGVF+TG+GMVGAICDFCE+W+CHGR+CL  HAC
Sbjct: 61  LQRLPTCAQCGKVKCMLKTGDCVVRHAGVFTTGLGMVGAICDFCESWVCHGRRCLTVHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
           +CPLQDA+C+ECERGVWDHGGR++KC FC  FLCEDDQFEHQASCQVLESENYKC+SCNK
Sbjct: 121 SCPLQDAICVECERGVWDHGGRIFKCSFCASFLCEDDQFEHQASCQVLESENYKCQSCNK 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQ 239
           LGQYSCL+CKICFCEDH RRKGFKYEKNKP+PCPKCGFET+QTKDLS+STR+HKFGRQ+
Sbjct: 181 LGQYSCLKCKICFCEDHIRRKGFKYEKNKPLPCPKCGFETAQTKDLSVSTRTHKFGRQK 239

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862036|ref|XP_003706490.1| PREDICTED: zinc finger protein 330 homolog [Megachile rotundata]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/259 (76%), Positives = 231/259 (89%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQR+KAEK KLRQKEIR+A+D++++A+FPCNA MECDKC +KQK+RAFCYFCQS
Sbjct: 1   MPKKKTGQRRKAEKQKLRQKEIRAAKDQINLAKFPCNAVMECDKCNKKQKSRAFCYFCQS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           VQRLP C HCGK+KCMLKTGDCV++H GVF+TG+GMVGAICD CEAW+CHGR+CL THAC
Sbjct: 61  VQRLPMCAHCGKVKCMLKTGDCVVRHPGVFTTGLGMVGAICDHCEAWVCHGRRCLTTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA+C ECERGVWDHGGR+++C FC+ FLCEDDQFEHQASCQVLE+E++KC+SCN+
Sbjct: 121 MCPLMDAICQECERGVWDHGGRIFRCSFCDCFLCEDDQFEHQASCQVLEAESFKCQSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQYSCLRCK C+CEDH RRKGFKY+KNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  
Sbjct: 181 LGQYSCLRCKTCYCEDHVRRKGFKYDKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQNQ 240

Query: 241 NGDDYDDEDDDYDVGGGYS 259
           +G    D++  Y   G  S
Sbjct: 241 SGLYESDDETGYSCYGSQS 259

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715444|ref|XP_003396223.1| PREDICTED: zinc finger protein 330 homolog [Bombus terrestris]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/261 (77%), Positives = 232/261 (88%), Gaps = 8/261 (3%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQR+KAEK KLRQKEIR+A+D++ +A+FPCNA MECDKC +KQK+RAFCYFCQS
Sbjct: 1   MPKKKTGQRRKAEKQKLRQKEIRTAKDQLDLAKFPCNAVMECDKCSKKQKSRAFCYFCQS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           VQRLP C HCGKIKCMLKTGDCV++H GVF+TG+GMVGAICD CEAW+CHGR+CL THAC
Sbjct: 61  VQRLPMCAHCGKIKCMLKTGDCVVRHPGVFNTGLGMVGAICDHCEAWVCHGRRCLTTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA+C ECERGVWDHGGR+++C FC  FLCEDDQFEHQASCQVLE+E++KC+SCN+
Sbjct: 121 ICPLIDAICQECERGVWDHGGRIFRCSFCNCFLCEDDQFEHQASCQVLEAESFKCQSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQYSCLRCK C+CEDH RRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTR+HKFGRQ  
Sbjct: 181 LGQYSCLRCKTCYCEDHIRRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRTHKFGRQ-- 238

Query: 241 NGDDYDDEDDDYDVGGGYSGF 261
            G  Y+ +D+     GGY+ +
Sbjct: 239 -GGTYESDDE-----GGYNYY 253

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012890|ref|XP_003690506.1| PREDICTED: zinc finger protein 330 homolog [Apis florea]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/283 (71%), Positives = 238/283 (84%), Gaps = 11/283 (3%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQR+KAEK KLRQKEIR+A+D++ +A+FPCNA MECDKC +KQK+RAFCYFCQ+
Sbjct: 1   MPKKKTGQRRKAEKQKLRQKEIRTAKDQLDLAKFPCNAVMECDKCGKKQKSRAFCYFCQT 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           +QRLP C HCGKIKCMLKTGDCV++H GVF+ G+GMVGAICD CEAW+CHGR+CL THAC
Sbjct: 61  LQRLPMCAHCGKIKCMLKTGDCVVRHPGVFTIGLGMVGAICDHCEAWVCHGRRCLTTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA+C ECERGVWDHGGR+++C FC  FLCEDDQFEHQASCQVLE+EN+KC+SCN+
Sbjct: 121 MCPLIDAICQECERGVWDHGGRIFRCSFCNCFLCEDDQFEHQASCQVLEAENFKCQSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ-Q 239
           LGQYSCLRCK C+CEDH RRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTR+HKFGRQ Q
Sbjct: 181 LGQYSCLRCKTCYCEDHIRRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRNHKFGRQSQ 240

Query: 240 LNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLN 282
            +  +YD+E+          G++Y G  + N     +   Q N
Sbjct: 241 GSTYEYDNEN----------GYNYYGNQSQNCIPENYTSYQEN 273

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414653|ref|XP_003490380.1| PREDICTED: zinc finger protein 330 homolog [Bombus impatiens]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/260 (77%), Positives = 232/260 (89%), Gaps = 4/260 (1%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQR+KAEK KLRQKEIR+A+D++ +A+FPCNA MECDKC +KQK+RAFCYFCQS
Sbjct: 1   MPKKKTGQRRKAEKQKLRQKEIRTAKDQLDLAKFPCNAVMECDKCSKKQKSRAFCYFCQS 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           VQRLP C HCGKIKCMLKTGDCV++H GVF+TG+GMVGAICD CEAW+CHGR+CL THAC
Sbjct: 61  VQRLPMCAHCGKIKCMLKTGDCVVRHPGVFNTGLGMVGAICDHCEAWVCHGRRCLTTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DA+C ECERGVWDHGGR+++C FC  FLCEDDQFEHQASCQVLE+E++KC+SCN+
Sbjct: 121 ICPLIDAICQECERGVWDHGGRIFRCSFCNCFLCEDDQFEHQASCQVLEAESFKCQSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQYSCLRCK C+CEDH RRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTR+HKFGRQ  
Sbjct: 181 LGQYSCLRCKTCYCEDHIRRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRTHKFGRQ-- 238

Query: 241 NGDDYDDEDD-DYDVGGGYS 259
            G  Y+ +D+ +Y+  G  S
Sbjct: 239 -GGTYESDDEGEYNYYGNQS 257

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202196|gb|EFN81683.1| Zinc finger protein 330-like protein [Harpegnathos saltator]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/269 (73%), Positives = 231/269 (85%), Gaps = 1/269 (0%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQR+KAEK KLRQKEIR+A++++ +A+FPCN+ MECDKC +KQK+RAFCYFCQ+
Sbjct: 1   MPKKKTGQRRKAEKQKLRQKEIRTAKEQIDLAKFPCNSVMECDKCGKKQKSRAFCYFCQN 60

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           +QRLP C HCGKIKCMLKTGDCV++H G+F+TG+ MVGAICD CEAW+CHGR+CL THAC
Sbjct: 61  LQRLPMCAHCGKIKCMLKTGDCVVRHPGIFTTGLSMVGAICDHCEAWVCHGRRCLTTHAC 120

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL DAVC ECERGVWDHGGR+++C FC  FLCEDDQFEHQASCQVLE+E++KC+SCN+
Sbjct: 121 ICPLIDAVCQECERGVWDHGGRIFRCSFCNCFLCEDDQFEHQASCQVLEAESFKCQSCNR 180

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQYSCLRCK C+CEDH RRKGFKYEKNKPIPCPKC FETSQTKDLSMSTRSHKFGRQ  
Sbjct: 181 LGQYSCLRCKTCYCEDHVRRKGFKYEKNKPIPCPKCSFETSQTKDLSMSTRSHKFGRQN- 239

Query: 241 NGDDYDDEDDDYDVGGGYSGFSYGGGGAT 269
            G  ++ +D++     G   F YG    T
Sbjct: 240 QGSSFESDDENGYNSHGNQDFCYGTSSYT 268

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194906931|ref|XP_001981452.1| GG12064 [Drosophila erecta] gi|190656090|gb|EDV53322.1| GG12064 [Drosophila erecta]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/248 (80%), Positives = 224/248 (90%), Gaps = 2/248 (0%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTGQRKKAEK KLR KEIRS   ++ +A+ PCNA MECDKC++KQK+RAFCYFCQS
Sbjct: 1   MPKKKTGQRKKAEKQKLRLKEIRSR--EVPLADLPCNAPMECDKCEKKQKSRAFCYFCQS 58

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           +QRLP C  CGKIKCMLKTGDCV+KH GV++TG+GMVGAICDFCEAW+CHGRKCLQ HAC
Sbjct: 59  IQRLPICAQCGKIKCMLKTGDCVVKHPGVYTTGLGMVGAICDFCEAWVCHGRKCLQNHAC 118

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
           TCPLQ+A CLECERGVW+HGGR++KC FC GFLCEDDQFEHQASCQVLESENYKC+SCNK
Sbjct: 119 TCPLQNATCLECERGVWEHGGRIFKCSFCNGFLCEDDQFEHQASCQVLESENYKCQSCNK 178

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQYSCLRCK C+CEDH RRKGFKY+KNKPIPCPKC ++TS TKDLSMSTRSHKFGRQQ 
Sbjct: 179 LGQYSCLRCKTCYCEDHVRRKGFKYDKNKPIPCPKCNYDTSVTKDLSMSTRSHKFGRQQQ 238

Query: 241 NGDDYDDE 248
            G+  D+E
Sbjct: 239 GGNSDDEE 246

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
FB|FBgn0026400	315	Noa36 "Noa36" [Drosophila mela	0.762	0.752	0.824	4.5e-122
ZFIN|ZDB-GENE-040426-2697	320	znf330 "zinc finger protein 33	0.762	0.740	0.735	1.5e-106
UNIPROTKB|Q32LC9	320	ZNF330 "Zinc finger protein 33	0.765	0.743	0.735	2.5e-106
UNIPROTKB|Q9Y3S2	320	ZNF330 "Zinc finger protein 33	0.765	0.743	0.735	2.5e-106
UNIPROTKB|E2R0K7	320	ZNF330 "Uncharacterized protei	0.765	0.743	0.731	5.1e-106
MGI|MGI:1353574	316	Zfp330 "zinc finger protein 33	0.765	0.753	0.731	6.5e-106
RGD|1307510	317	Zfp330 "zinc finger protein 33	0.765	0.750	0.731	6.5e-106
UNIPROTKB|E1C2N4	320	ZNF330 "Uncharacterized protei	0.765	0.743	0.739	8.3e-106
UNIPROTKB|E1BD90	320	E1BD90 "Uncharacterized protei	0.765	0.743	0.718	2.3e-103
UNIPROTKB|D6RBR7	229	ZNF330 "Zinc finger protein 33	0.736	1.0	0.729	2.6e-102

FB|FBgn0026400 Noa36 "Noa36" [Drosophila melanogaster (taxid:7227)]

 Score = 1170 (416.9 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 197/239 (82%), Positives = 219/239 (91%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTGQRKKAEK KLR KEIRS   ++ +A+ PCNA MECDKC++KQK+RAFCYFCQS
Sbjct:     1 MPKKKTGQRKKAEKQKLRLKEIRSR--EVPLADLPCNAPMECDKCEKKQKSRAFCYFCQS 58

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             +QRLP C  CGKIKCMLKTGDCV+KH GV++TG+GMVGAICDFCEAW+CHGRKCLQ HAC
Sbjct:    59 IQRLPICAQCGKIKCMLKTGDCVVKHPGVYTTGLGMVGAICDFCEAWVCHGRKCLQNHAC 118

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
             TCPLQ+A CLECERGVW+HGGR++KC FC GFLCEDDQFEHQASCQVLESENYKC+SCNK
Sbjct:   119 TCPLQNATCLECERGVWEHGGRIFKCSFCNGFLCEDDQFEHQASCQVLESENYKCQSCNK 178

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQ 239
             LGQYSCLRCK C+CEDH RRKGFKY+KNKPIPCPKC ++TS TKDLSMSTRSHKFGRQQ
Sbjct:   179 LGQYSCLRCKTCYCEDHVRRKGFKYDKNKPIPCPKCNYDTSVTKDLSMSTRSHKFGRQQ 237

GO:0005730 "nucleolus" evidence=ISS;NAS

GO:0030496 "midbody" evidence=ISS

GO:0046872 "metal ion binding" evidence=ISS

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2697 znf330 "zinc finger protein 330" [Danio rerio (taxid:7955)]

 Score = 1031 (368.0 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
 Identities = 175/238 (73%), Positives = 198/238 (83%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTG RKKAE  K R+K+ R  R+ + VA+ PCNA MECDKC+R+QKNRAFCYFC  
Sbjct:     1 MPKKKTGARKKAESRKEREKQSRVNRETVDVAKHPCNAAMECDKCQRRQKNRAFCYFCSW 60

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             VQ+LP C  CGK KCM K+ DCVIKH GV STGMGMVGAICDFCEAW+CHGRKCL THAC
Sbjct:    61 VQKLPLCAQCGKTKCM-KSSDCVIKHPGVHSTGMGMVGAICDFCEAWVCHGRKCLSTHAC 119

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
             +CPL DA C+EC+R VW+HGGR+++C FC  FLCEDDQFEHQASCQVLE+E YKC  CN+
Sbjct:   120 SCPLSDADCIECDRSVWEHGGRIFRCSFCHNFLCEDDQFEHQASCQVLEAETYKCLPCNR 179

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ 238
             LGQ+SCLRCK CFC+DHAR K FK EK K  PCPKCG ET +TKDLSMSTR+HKFGRQ
Sbjct:   180 LGQHSCLRCKACFCDDHARSKVFKQEKGKNPPCPKCGHETQETKDLSMSTRTHKFGRQ 237

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q32LC9 ZNF330 "Zinc finger protein 330" [Bos taurus (taxid:9913)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 175/238 (73%), Positives = 202/238 (84%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct:     1 MPKKKTGARKKAENRREREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct:    61 VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
              CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct:   121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ 238
             LGQ+SCLRCK CFC+DH R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ
Sbjct:   181 LGQHSCLRCKACFCDDHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ 238

GO:0005730 "nucleolus" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9Y3S2 ZNF330 "Zinc finger protein 330" [Homo sapiens (taxid:9606)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 175/238 (73%), Positives = 202/238 (84%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct:     1 MPKKKTGARKKAENRREREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct:    61 VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
              CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct:   121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ 238
             LGQ+SCLRCK CFC+DH R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ
Sbjct:   181 LGQHSCLRCKACFCDDHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ 238

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0046872 "metal ion binding" evidence=NAS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2R0K7 ZNF330 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
 Identities = 174/238 (73%), Positives = 202/238 (84%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct:     1 MPKKKTGARKKAESRREREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ M+GAICDFCEAW+CHGRKCL THAC
Sbjct:    61 VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMMGAICDFCEAWVCHGRKCLSTHAC 120

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
              CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct:   121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ 238
             LGQ+SCLRCK CFC+DH R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ
Sbjct:   181 LGQHSCLRCKACFCDDHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ 238

GO:0030496 "midbody" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1353574 Zfp330 "zinc finger protein 330" [Mus musculus (taxid:10090)]

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 174/238 (73%), Positives = 202/238 (84%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct:     1 MPKKKTGARKKAENRREREKQLRASRSTVDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct:    61 VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
              CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct:   121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ 238
             LGQ+SCLRCK CFC++H R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ
Sbjct:   181 LGQHSCLRCKACFCDEHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ 238

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030496 "midbody" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1307510 Zfp330 "zinc finger protein 330" [Rattus norvegicus (taxid:10116)]

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 174/238 (73%), Positives = 202/238 (84%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct:     1 MPKKKTGARKKAENRREREKQLRASRSTVDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct:    61 VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
              CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct:   121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ 238
             LGQ+SCLRCK CFC++H R K FK EK K  PCPKCG ET +TKDLSMSTRS KFGRQ
Sbjct:   181 LGQHSCLRCKACFCDEHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGRQ 238

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA;ISO

UNIPROTKB|E1C2N4 ZNF330 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 176/238 (73%), Positives = 201/238 (84%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTG RKKAE  + R+K+IR++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct:     1 MPKKKTGARKKAENRREREKQIRASRANIDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct:    61 VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
              CPL DA C+ECER VWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct:   121 ICPLADAECIECERSVWDHGGRMFACSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ 238
             LGQ+SCLRCK CFC+DH R K FK EK K  PCPKCG ET QTKDLSMSTRS KFGRQ
Sbjct:   181 LGQHSCLRCKACFCDDHVRSKVFKQEKGKEPPCPKCGHETQQTKDLSMSTRSLKFGRQ 238

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0030496 "midbody" evidence=IEA

UNIPROTKB|E1BD90 E1BD90 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 171/238 (71%), Positives = 200/238 (84%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKN+AFCYFC S
Sbjct:     1 MPKKKTGARKKAENHQEREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNKAFCYFCNS 60

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct:    61 VQKLPICAQCGKTKCMMKSLDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
              CPL +A C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct:   121 ACPLTNAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ 238
             LGQ+SCL CK CFC+DH R K FK EK K  PCPKCG ET +TKDLSMSTRS KFG Q
Sbjct:   181 LGQHSCLCCKACFCDDHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMSTRSLKFGMQ 238

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|D6RBR7 ZNF330 "Zinc finger protein 330" [Homo sapiens (taxid:9606)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 167/229 (72%), Positives = 194/229 (84%)

Query:     1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
             MPKKKTG RKKAE  + R+K++R++R  + +A+ PCNA+MECDKC+R+QKNRAFCYFC S
Sbjct:     1 MPKKKTGARKKAENRREREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNS 60

Query:    61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
             VQ+LP C  CGK KCM+K+ DCVIKHAGV+STG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct:    61 VQKLPICAQCGKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHAC 120

Query:   121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
              CPL DA C+ECERGVWDHGGR++ C FC  FLCEDDQFEHQASCQVLE+E +KC SCN+
Sbjct:   121 ACPLTDAECVECERGVWDHGGRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNR 180

Query:   181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMS 229
             LGQ+SCLRCK CFC+DH R K FK EK K  PCPKCG ET +TKDLSMS
Sbjct:   181 LGQHSCLRCKACFCDDHTRSKVFKQEKGKQPPCPKCGHETQETKDLSMS 229

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q922H9	ZN330_MOUSE	No assigned EC number	0.7310	0.7652	0.7531	yes	N/A
Q9VAU9	ZN330_DROME	No assigned EC number	0.8064	0.7909	0.7809	yes	N/A
O70524	ZN330_CRIGR	No assigned EC number	0.7007	0.8102	0.7949	yes	N/A
Q5R9D9	ZN330_PONAB	No assigned EC number	0.7047	0.8102	0.7875	yes	N/A
Q9Y3S2	ZN330_HUMAN	No assigned EC number	0.7047	0.8102	0.7875	yes	N/A
Q32LC9	ZN330_BOVIN	No assigned EC number	0.6802	0.8392	0.8156	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	311
pfam06524	314	pfam06524, NOA36, NOA36 protein	1e-139

>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein

 Score =  394 bits (1014), Expect = e-139
 Identities = 187/294 (63%), Positives = 221/294 (75%), Gaps = 2/294 (0%)

Query: 1   MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
           MPKKKTG RKKAEK + R+KEIR++     +A  PCNA MECDKC R QK RAFCYFC S
Sbjct: 1   MPKKKTGARKKAEKQRERRKEIRNSIVV-DLARHPCNALMECDKCSRNQKTRAFCYFCNS 59

Query: 61  VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
           VQ+LP C  CGK KCM+K GDCV KHAGV+ TG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct: 60  VQKLPICAQCGKQKCMMKGGDCVTKHAGVYVTGLQMVGAICDFCEAWVCHGRKCLTTHAC 119

Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
            CPL+ A C+ECERGVW+HGGR+++C FC+ FLCEDDQFEHQASCQVLE+EN+KC SCN+
Sbjct: 120 KCPLRGAQCMECERGVWEHGGRIFQCSFCQDFLCEDDQFEHQASCQVLENENFKCMSCNR 179

Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
           LGQYSCLRCK+C C DH RRKGFKY+K+K +PCPKCG+ T++TKDLSMSTRS+KFGRQ  
Sbjct: 180 LGQYSCLRCKVCCCNDHVRRKGFKYDKDKNLPCPKCGYPTTETKDLSMSTRSYKFGRQTR 239

Query: 241 NGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYD 294
                DD+          S   YG     N        +  + +DYD+E+D  D
Sbjct: 240 GFRSDDDQGYGRYKQNLSSNK-YGDFKGVNYGYESDDDEGSSSNDYDEEEDGDD 292

This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown. Length = 314

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	100.0
KOG2462|consensus	279		99.93
KOG1074|consensus	958		99.87
KOG2462|consensus	279		99.85
KOG3623|consensus	1007		99.81
KOG3623|consensus	1007		99.81
KOG3608|consensus	467		99.76
KOG3608|consensus	467		99.71
KOG1074|consensus	958		99.64
KOG3576|consensus	267		99.44
KOG3576|consensus	267		99.4
PLN03086	567	PRLI-interacting factor K; Provisional	99.0
PLN03086	567	PRLI-interacting factor K; Provisional	98.92
PHA00733	128	hypothetical protein	98.89
PHA02768	55	hypothetical protein; Provisional	98.89
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.64
PHA02768	55	hypothetical protein; Provisional	98.43
PHA00733	128	hypothetical protein	98.43
KOG3993|consensus	500		98.41
PHA00616	44	hypothetical protein	98.34
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.22
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.21
PHA00732	79	hypothetical protein	98.18
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.97
PHA00616	44	hypothetical protein	97.9
KOG3993|consensus	500		97.8
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.69
PHA00732	79	hypothetical protein	97.68
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.58
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.4
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.25
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.25
smart00355	26	ZnF_C2H2 zinc finger.	97.02
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.86
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.84
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.77
KOG2231|consensus	669		96.67
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.44
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.3
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.19
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.15
PRK04860	160	hypothetical protein; Provisional	96.0
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.89
smart00355	26	ZnF_C2H2 zinc finger.	95.53
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.35
KOG2893|consensus	341		95.15
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.82
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.54
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.53
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.47
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	94.39
KOG2231|consensus	669		94.33
PRK04860	160	hypothetical protein; Provisional	93.66
KOG2785|consensus	390		93.5
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	92.63
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.16
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.88
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	91.71
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.77
KOG1146|consensus	1406		89.51
COG5048	467	FOG: Zn-finger [General function prediction only]	89.31
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	88.88
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.8
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	87.14
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	87.01
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	86.92
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	86.14
KOG2893|consensus	341		86.13
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	85.54
COG5048	467	FOG: Zn-finger [General function prediction only]	85.12
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	84.66
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	84.21
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	84.09
PHA00626	59	hypothetical protein	83.09
PF11596	241	DUF3246: Protein of unknown function (DUF3246); In	81.63
KOG2186|consensus	276		81.38
KOG1146|consensus	1406		81.33
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	81.01
KOG2785|consensus	390		80.33

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=100.00  E-value=4.6e-35  Score=244.05  Aligned_cols=241  Identities=83%  Similarity=1.567  Sum_probs=223.0

Q ss_pred             CCcchhhhHHHHHHHHHHHHHhhhhhccccccccCCCCccccCcCccccccccchhhcccCCCCccccccccccccCCCH
Q psy2238           1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTG   80 (311)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~c~~~h~~~k~~~C~~C~k~~~~f~~~   80 (311)
                      |||+|+|+|||+|++++||+++|+. ...++..||.+..++|..|++..+|++.|||+.+.++...|..||+.-+|..+.
T Consensus         1 MPkKKtG~rKKaEkqk~rqk~ir~~-~~~dl~~~pcN~~MeCdkC~r~QKnRAFCYFC~s~qrlp~Ca~Cgk~KCm~k~g   79 (314)
T PF06524_consen    1 MPKKKTGQRKKAEKQKERQKEIRSA-EEVDLAKHPCNALMECDKCQRKQKNRAFCYFCQSVQRLPMCAHCGKTKCMLKTG   79 (314)
T ss_pred             CCCcccchhhHHHHHHHHHHHHHhc-cccccccCCCCccccchhhhhhccccceeehhhhhhcCchhhhcCCeeeeccCC
Confidence            8999999999999999999999999 778899999999999999999999999999999999999999999998889999


Q ss_pred             HHHHHhHhhhccCCCcCcccCCCChhhHHhHHHHHHhhcCcCCCCcccccccccccccCCCceeecCCCCCCCChHHHHH
Q psy2238          81 DCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFE  160 (311)
Q Consensus        81 ~~L~~H~~~h~~~~~~~~~~C~~C~~f~~~~~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~~f~~~~~L~~  160 (311)
                      ..++.|.-+++++.+.....|++|.+|+.+.+.-|.+|....|++...|.+|.+..|.++.+.|+|.+|..|.-...-..
T Consensus        80 dCvvkH~g~~~tGl~mvGaiCDfCEawvCHgrkCl~~HaC~Cpl~da~C~EC~R~vw~hGGrif~CsfC~~flCEDDQFE  159 (314)
T PF06524_consen   80 DCVVKHPGVFTTGLGMVGAICDFCEAWVCHGRKCLSTHACTCPLQDAVCIECERGVWDHGGRIFKCSFCDNFLCEDDQFE  159 (314)
T ss_pred             CeEEecCceeecccchhhhhhccchhheeccccccccccccCcCCCcEeeeeecccccCCCeEEEeecCCCeeeccchhh
Confidence            99999999998888888899999999999999899999999999999999999999999999999999998887777889


Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL  240 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  240 (311)
                      |+...++++...|+|..|.+...|.|..|--.|-..+.++.-......+|++||.|+........|..-.|+|.-+++..
T Consensus       160 HQAsCQvLe~E~~KC~SCNrlGq~sCLRCK~cfCddHvrrKg~ky~k~k~~PCPKCg~et~eTkdLSmStR~hkyGRQ~~  239 (314)
T PF06524_consen  160 HQASCQVLESETFKCQSCNRLGQYSCLRCKICFCDDHVRRKGFKYEKGKPIPCPKCGYETQETKDLSMSTRSHKYGRQGQ  239 (314)
T ss_pred             hhhhhhhhhcccccccccccccchhhhheeeeehhhhhhhcccccccCCCCCCCCCCCcccccccceeeeecchhccccC
Confidence            99888778889999999999999999999999977776666666677799999999999999999999999998887766


Q ss_pred             CC
Q psy2238         241 NG  242 (311)
Q Consensus       241 ~~  242 (311)
                      ..
T Consensus       240 ~~  241 (314)
T PF06524_consen  240 AD  241 (314)
T ss_pred             CC
Confidence            64

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>KOG2462|consensus

Probab=99.93  E-value=7.8e-27  Score=198.25  Aligned_cols=134  Identities=19%  Similarity=0.339  Sum_probs=117.8

Q ss_pred             CCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHHh--HHHHHHhhcCcCCCCcccccccccccc
Q psy2238          61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWICH--GRKCLQTHACTCPLQDAVCLECERGVW  137 (311)
Q Consensus        61 ~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~~--~~~H~~~H~~~~~~~~~~C~~C~~~f~  137 (311)
                      ..-.|+|..||+.   +.+..+|.+|.++|-.....+-+.|++|+ .|+..  +++|+|+|+-                 
T Consensus       127 ~~~r~~c~eCgk~---ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l-----------------  186 (279)
T KOG2462|consen  127 KHPRYKCPECGKS---YSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTL-----------------  186 (279)
T ss_pred             cCCceeccccccc---cccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCC-----------------
Confidence            3447999999999   89999999999999855455679999999 66643  4799999972                 


Q ss_pred             cCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         138 DHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       138 ~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                           +++|.+|| .|...+.|+-|+|+|  +|||||.           |+.|+|+| .+++|+.|+++|.+.|+|+|..
T Consensus       187 -----~c~C~iCGKaFSRPWLLQGHiRTH--TGEKPF~-----------C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~  248 (279)
T KOG2462|consen  187 -----PCECGICGKAFSRPWLLQGHIRTH--TGEKPFS-----------CPHCGKAFADRSNLRAHMQTHSDVKKHQCPR  248 (279)
T ss_pred             -----CcccccccccccchHHhhcccccc--cCCCCcc-----------CCcccchhcchHHHHHHHHhhcCCccccCcc
Confidence                 45677777 788889999999999  9999999           99999999 7779999999999999999999


Q ss_pred             CCccccCchHHHHHHHH
Q psy2238         216 CGFETSQTKDLSMSTRS  232 (311)
Q Consensus       216 C~k~f~~~~~L~~H~~~  232 (311)
                      |+|.|...+.|.+|...
T Consensus       249 C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  249 CGKSFALKSYLNKHSES  265 (279)
T ss_pred             hhhHHHHHHHHHHhhhh
Confidence            99999999999999765

>KOG1074|consensus

Probab=99.87  E-value=5.4e-23  Score=196.15  Aligned_cols=60  Identities=15%  Similarity=0.182  Sum_probs=55.7

Q ss_pred             CcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         183 QYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       183 ~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .+.|.+|++.| ++..|..|+++|+++|||.|.+|++.|+.+.+|+.||.+|+...+....
T Consensus       879 ~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr  939 (958)
T KOG1074|consen  879 AHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR  939 (958)
T ss_pred             hhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence            37799999999 6669999999999999999999999999999999999999998887764

>KOG2462|consensus

Probab=99.85  E-value=5.7e-22  Score=168.70  Aligned_cols=124  Identities=16%  Similarity=0.384  Sum_probs=102.9

Q ss_pred             CCccccCcCccccccccchhhcc-------cCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhH
Q psy2238          37 NANMECDKCKRKQKNRAFCYFCQ-------SVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWI  108 (311)
Q Consensus        37 ~~~~~C~~C~~~f~~~~~c~~~h-------~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~  108 (311)
                      ...|.|.+|++.+.+... +-+|       ..++.+.|++|+|.   |.+..+|+.|+++|+     -+++|.+|| +|.
T Consensus       128 ~~r~~c~eCgk~ysT~sn-LsrHkQ~H~~~~s~ka~~C~~C~K~---YvSmpALkMHirTH~-----l~c~C~iCGKaFS  198 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSN-LSRHKQTHRSLDSKKAFSCKYCGKV---YVSMPALKMHIRTHT-----LPCECGICGKAFS  198 (279)
T ss_pred             CCceeccccccccccccc-cchhhcccccccccccccCCCCCce---eeehHHHhhHhhccC-----CCccccccccccc
Confidence            445899999999985543 2222       23677999999999   899999999999998     699999999 787


Q ss_pred             H--hHHHHHHhhcCcCCCCcccccccccccccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcc
Q psy2238         109 C--HGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYS  185 (311)
Q Consensus       109 ~--~~~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~  185 (311)
                      .  .++-|+|+|+||                    |||.|+.|+ .|+.+++|+.||++|  .+.|+|+           
T Consensus       199 RPWLLQGHiRTHTGE--------------------KPF~C~hC~kAFADRSNLRAHmQTH--S~~K~~q-----------  245 (279)
T KOG2462|consen  199 RPWLLQGHIRTHTGE--------------------KPFSCPHCGKAFADRSNLRAHMQTH--SDVKKHQ-----------  245 (279)
T ss_pred             chHHhhcccccccCC--------------------CCccCCcccchhcchHHHHHHHHhh--cCCcccc-----------
Confidence            4  337999999999                    467778888 799999999999999  8899999           


Q ss_pred             cCCCchhcchHH-HHHHh
Q psy2238         186 CLRCKICFCEDH-ARRKG  202 (311)
Q Consensus       186 C~~C~k~F~~~~-l~~H~  202 (311)
                      |..|+|+|...+ |.+|.
T Consensus       246 C~~C~KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  246 CPRCGKSFALKSYLNKHS  263 (279)
T ss_pred             CcchhhHHHHHHHHHHhh
Confidence            999999997664 45554

>KOG3623|consensus

Probab=99.81  E-value=9.1e-21  Score=178.34  Aligned_cols=78  Identities=23%  Similarity=0.430  Sum_probs=62.1

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchH-HHHHHhhhhcCCCCccCCCCCc
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCED-HARRKGFKYEKNKPIPCPKCGF  218 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~-~l~~H~~~h~~~k~~~C~~C~k  218 (311)
                      +.+|.|+.|. .|...++|.+|.-.|  +|.+||+           |.+|.|+|..+ +|..|+|.|.|+|||+|..|+|
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEH--sGqRPyq-----------C~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClK  958 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEH--SGQRPYQ-----------CIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLK  958 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhh--cCCCCcc-----------cchhhHhhhhhhhhhhhhhhccCCCcchhhhhhh
Confidence            4567888888 788888888888777  8888887           88888888666 7888888888888888888888


Q ss_pred             cccCchHHHHHHH
Q psy2238         219 ETSQTKDLSMSTR  231 (311)
Q Consensus       219 ~f~~~~~L~~H~~  231 (311)
                      +|+...++.+||-
T Consensus       959 RFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  959 RFSHSGSYSQHMN  971 (1007)
T ss_pred             hcccccchHhhhc
Confidence            8888888888873

>KOG3623|consensus

Probab=99.81  E-value=1.8e-20  Score=176.36  Aligned_cols=105  Identities=18%  Similarity=0.266  Sum_probs=78.8

Q ss_pred             CccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHHhH--HHHHHhhcCcCCCCcccccccccccccCC
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWICHG--RKCLQTHACTCPLQDAVCLECERGVWDHG  140 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~~~--~~H~~~H~~~~~~~~~~C~~C~~~f~~~~  140 (311)
                      ...|+.|.+.   +.....|+.|++.-+ ...+..|.|.+|. +|....  -+|+.+|..-.+   -.    -..-....
T Consensus       210 lltcpycdrg---ykrltslkeHikyrh-ekne~nfsC~lCsytFAyRtQLErhm~~hkpg~d---qa----~sltqsa~  278 (1007)
T KOG3623|consen  210 LLTCPYCDRG---YKRLTSLKEHIKYRH-EKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGD---QA----ISLTQSAL  278 (1007)
T ss_pred             hhcchhHHHH---HHHHHHHHHHHHHHH-hhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCc---cc----ccccchhh
Confidence            4689999999   889999999998543 1134579999999 776544  599999875422   00    00001124


Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKL  181 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~  181 (311)
                      .+-|+|..|+ .|..+..|+.|+|+|  .|||||.|+.|.|.
T Consensus       279 lRKFKCtECgKAFKfKHHLKEHlRIH--SGEKPfeCpnCkKR  318 (1007)
T KOG3623|consen  279 LRKFKCTECGKAFKFKHHLKEHLRIH--SGEKPFECPNCKKR  318 (1007)
T ss_pred             hccccccccchhhhhHHHHHhhheee--cCCCCcCCcccccc
Confidence            5678899999 799999999999998  99999999999998

>KOG3608|consensus

Probab=99.76  E-value=6.5e-19  Score=153.82  Aligned_cols=160  Identities=19%  Similarity=0.330  Sum_probs=100.6

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHHh--HHHHHHhhcCcCCCCcccccccccc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWICH--GRKCLQTHACTCPLQDAVCLECERG  135 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~~--~~~H~~~H~~~~~~~~~~C~~C~~~  135 (311)
                      |+++|...|+.||..   |.++..|-.|++..+.. ...+|.|.+|- .|...  ++.|++.|..-     |+|+.|+.+
T Consensus       202 Hs~eKvvACp~Cg~~---F~~~tkl~DH~rRqt~l-~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~-----ykCplCdmt  272 (467)
T KOG3608|consen  202 HSNEKVVACPHCGEL---FRTKTKLFDHLRRQTEL-NTNSFQCAQCFKRFATEKLLKSHVVRHVNC-----YKCPLCDMT  272 (467)
T ss_pred             cCCCeEEecchHHHH---hccccHHHHHHHhhhhh-cCCchHHHHHHHHHhHHHHHHHHHHHhhhc-----ccccccccC
Confidence            444444444444444   44444444444433311 12344444444 33321  13444444433     444444443


Q ss_pred             cc------------cCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCC--Cchhc-chHHHH
Q psy2238         136 VW------------DHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLR--CKICF-CEDHAR  199 (311)
Q Consensus       136 f~------------~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~--C~k~F-~~~~l~  199 (311)
                      ..            +...+||+|+.|. .|...+.|.+|..+|  + +-.|.           |+.  |...| +...++
T Consensus       273 c~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~H--S-~~~y~-----------C~h~~C~~s~r~~~q~~  338 (467)
T KOG3608|consen  273 CSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVH--S-KTVYQ-----------CEHPDCHYSVRTYTQMR  338 (467)
T ss_pred             CCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhc--c-cccee-----------cCCCCCcHHHHHHHHHH
Confidence            22            1245788888899 889999999999987  4 66788           655  99999 445999


Q ss_pred             HHhhhhc-CC--CCccCCCCCccccCchHHHHHH-HHhcCCCCCCC
Q psy2238         200 RKGFKYE-KN--KPIPCPKCGFETSQTKDLSMST-RSHKFGRQQLN  241 (311)
Q Consensus       200 ~H~~~h~-~~--k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~~  241 (311)
                      +|++.++ |.  -+|.|-.|++.|++..+|..|+ +.|.-.-|+.-
T Consensus       339 ~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh  384 (467)
T KOG3608|consen  339 RHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGH  384 (467)
T ss_pred             HHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCCCCC
Confidence            9998876 43  6799999999999999999996 55655555443

>KOG3608|consensus

Probab=99.71  E-value=6.9e-18  Score=147.45  Aligned_cols=175  Identities=15%  Similarity=0.272  Sum_probs=140.7

Q ss_pred             cccc--CcCccccccccchhhcc----c------------CCCC-ccc--cccccccccCCCHHHHHHhHhhhccCCCcC
Q psy2238          39 NMEC--DKCKRKQKNRAFCYFCQ----S------------VQRL-PQC--GHCGKIKCMLKTGDCVIKHAGVFSTGMGMV   97 (311)
Q Consensus        39 ~~~C--~~C~~~f~~~~~c~~~h----~------------~~k~-~~C--~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~   97 (311)
                      .|.|  ++|++.|.+-.. ++.|    +            .++| +.|  ..|.+.   |.++..|+.|++.|+   +++
T Consensus       134 ~f~C~WedCe~~F~s~~e-f~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~---~~~k~~LreH~r~Hs---~eK  206 (467)
T KOG3608|consen  134 NFRCGWEDCEREFVSIVE-FQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKH---MGNKYRLREHIRTHS---NEK  206 (467)
T ss_pred             hhccChhhcCCcccCHHH-HHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhh---hccHHHHHHHHHhcC---CCe
Confidence            3556  789999985433 3331    1            1222 344  568888   899999999999999   889


Q ss_pred             cccCCCCh-hhHHhH--HHHHHhhcCcCCCCcccccccccccccC---------CCceeecCCCC-CCCChHHHHHHHHH
Q psy2238          98 GAICDFCE-AWICHG--RKCLQTHACTCPLQDAVCLECERGVWDH---------GGRVYKCCFCE-GFLCEDDQFEHQAS  164 (311)
Q Consensus        98 ~~~C~~C~-~f~~~~--~~H~~~H~~~~~~~~~~C~~C~~~f~~~---------~~~~~~C~~C~-~f~~~~~L~~H~~~  164 (311)
                      ...|+.|+ .|....  -.|++..+.... .+|.|..|.|.|.+.         ...-|+|+.|. .....++|.+||+.
T Consensus       207 vvACp~Cg~~F~~~tkl~DH~rRqt~l~~-n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~  285 (467)
T KOG3608|consen  207 VVACPHCGELFRTKTKLFDHLRRQTELNT-NSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRY  285 (467)
T ss_pred             EEecchHHHHhccccHHHHHHHhhhhhcC-CchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHh
Confidence            99999999 676554  388886664432 579999999999763         45679999999 99999999999987


Q ss_pred             hcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC--CCccccCchHHHHHHHHhc
Q psy2238         165 CQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK--CGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       165 h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~  234 (311)
                      - |...|||+           |+.|++.| +-+.|.+|...|. +..|.|..  |..+|.+...|++|++.++
T Consensus       286 r-Hs~dkpfK-----------Cd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  286 R-HSKDKPFK-----------CDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             h-hccCCCcc-----------ccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence            5 37789999           99999999 5669999999877 88899966  9999999999999988765

>KOG1074|consensus

Probab=99.64  E-value=4.4e-17  Score=156.13  Aligned_cols=60  Identities=17%  Similarity=0.314  Sum_probs=54.2

Q ss_pred             CCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         182 GQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       182 ~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      -|.+|.+|-++. ..++|+.|.++|+||+||+|.+|+++|+++.+|+.||-+|...-++..
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~  664 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARV  664 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccc
Confidence            468899999999 666999999999999999999999999999999999999987665543

>KOG3576|consensus

Probab=99.44  E-value=6.2e-14  Score=114.18  Aligned_cols=109  Identities=20%  Similarity=0.357  Sum_probs=79.2

Q ss_pred             CcccCCCCh-hhHHhH--HHHHHhhcCcCCCCcccccccccccccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCC
Q psy2238          97 VGAICDFCE-AWICHG--RKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESEN  172 (311)
Q Consensus        97 ~~~~C~~C~-~f~~~~--~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~  172 (311)
                      ..|.|.+|+ +|....  .+|++-|...                    +.|.|..|| .|.....|++|+++|  +|.+|
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kch~~v--------------------kr~lct~cgkgfndtfdlkrh~rth--tgvrp  173 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKCHSDV--------------------KRHLCTFCGKGFNDTFDLKRHTRTH--TGVRP  173 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhhccHH--------------------HHHHHhhccCcccchhhhhhhhccc--cCccc
Confidence            457777777 565332  5777777655                    234444555 455666788899888  88888


Q ss_pred             ccCCCCCCCCCcccCCCchhcchH-HHHHHhhhhcC-----------CCCccCCCCCccccCchHHHHHHHHhcCCCC
Q psy2238         173 YKCKSCNKLGQYSCLRCKICFCED-HARRKGFKYEK-----------NKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       173 ~~C~~C~~~~~~~C~~C~k~F~~~-~l~~H~~~h~~-----------~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      |+           |..|+|+|++. +|..|.+..||           +|.|.|..||..-.....+..|++.|+...|
T Consensus       174 yk-----------c~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  174 YK-----------CSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             cc-----------hhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            88           88888888766 88888765554           3778999999888888888888888876544

>KOG3576|consensus

Probab=99.40  E-value=5.1e-14  Score=114.70  Aligned_cols=82  Identities=17%  Similarity=0.282  Sum_probs=74.8

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchH-HHHHHhhhhcCCCCccCCCCC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCED-HARRKGFKYEKNKPIPCPKCG  217 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~-~l~~H~~~h~~~k~~~C~~C~  217 (311)
                      +...|.|.+|+ +|.....|.+|++-|  ...+.|.           |..|||.|... .|.+|+++|+|-+||+|..|+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch--~~vkr~l-----------ct~cgkgfndtfdlkrh~rthtgvrpykc~~c~  180 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCH--SDVKRHL-----------CTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCE  180 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhc--cHHHHHH-----------HhhccCcccchhhhhhhhccccCccccchhhhh
Confidence            56789999999 899999999999998  7788888           99999999555 999999999999999999999


Q ss_pred             ccccCchHHHHHHH-Hhc
Q psy2238         218 FETSQTKDLSMSTR-SHK  234 (311)
Q Consensus       218 k~f~~~~~L~~H~~-~H~  234 (311)
                      |+|++..+|..|++ +|.
T Consensus       181 kaftqrcsleshl~kvhg  198 (267)
T KOG3576|consen  181 KAFTQRCSLESHLKKVHG  198 (267)
T ss_pred             HHHHhhccHHHHHHHHcC
Confidence            99999999999975 453

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.00  E-value=8.6e-10  Score=105.32  Aligned_cols=123  Identities=16%  Similarity=0.296  Sum_probs=87.6

Q ss_pred             ccCCCCh-hhHHhHHHHHHhhcCcCCCCcccccc--cccccccC-CCceeecCCCC-CCCChHHHHHHHHHhcccCCCCc
Q psy2238          99 AICDFCE-AWICHGRKCLQTHACTCPLQDAVCLE--CERGVWDH-GGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENY  173 (311)
Q Consensus        99 ~~C~~C~-~f~~~~~~H~~~H~~~~~~~~~~C~~--C~~~f~~~-~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~  173 (311)
                      -.|+.|. ....   .++..|..........|+.  |+..|... -++.+.|+.|+ .|. ...|..|+++|  +  +++
T Consensus       408 V~C~NC~~~i~l---~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~--H--kpv  479 (567)
T PLN03086        408 VECRNCKHYIPS---RSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVF--H--EPL  479 (567)
T ss_pred             EECCCCCCccch---hHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhc--C--CCc
Confidence            4798888 3221   1233444444323457874  99988654 56778999999 785 67799999997  3  778


Q ss_pred             cCCCCCCCCCcccCCCchhcchHHHHHHhhhhcCCCCccCCCCCccccC----------chHHHHHHHHhcCCCCCCCC
Q psy2238         174 KCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQ----------TKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       174 ~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~~C~k~f~~----------~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .           |+ |++.+.+..|..|..+|.+.+|+.|+.|++.|..          .+.|..|+.++ +.+++.|.
T Consensus       480 ~-----------Cp-Cg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~  545 (567)
T PLN03086        480 Q-----------CP-CGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCD  545 (567)
T ss_pred             c-----------CC-CCCCcchhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEcc
Confidence            8           77 8876666688888888888888888888888852          35788888875 67777774

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.92  E-value=2.7e-09  Score=101.95  Aligned_cols=138  Identities=20%  Similarity=0.347  Sum_probs=92.8

Q ss_pred             ccccCcCccccccccchhhcccCCC---Cccccc--cccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHH-hH
Q psy2238          39 NMECDKCKRKQKNRAFCYFCQSVQR---LPQCGH--CGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWIC-HG  111 (311)
Q Consensus        39 ~~~C~~C~~~f~~~~~c~~~h~~~k---~~~C~~--C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~-~~  111 (311)
                      .-.|..|.+....+.  +..|...=   .-.|+.  |+..   |..          ..   .+.++.|+.|+ .|.. .+
T Consensus       407 ~V~C~NC~~~i~l~~--l~lHe~~C~r~~V~Cp~~~Cg~v---~~r----------~e---l~~H~~C~~Cgk~f~~s~L  468 (567)
T PLN03086        407 TVECRNCKHYIPSRS--IALHEAYCSRHNVVCPHDGCGIV---LRV----------EE---AKNHVHCEKCGQAFQQGEM  468 (567)
T ss_pred             eEECCCCCCccchhH--HHHHHhhCCCcceeCCcccccce---eec----------cc---cccCccCCCCCCccchHHH
Confidence            346999988877332  22344332   345774  8888   522          11   23456899999 6643 23


Q ss_pred             HHHHHhhcCcCCCCcccccccccccccCCCceeecCCCCCCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCch
Q psy2238         112 RKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKI  191 (311)
Q Consensus       112 ~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k  191 (311)
                      ..|+++|+                      +++.|+ |+.+..+..|..|+.+|  ..++++.           |..|++
T Consensus       469 ekH~~~~H----------------------kpv~Cp-Cg~~~~R~~L~~H~~th--Cp~Kpi~-----------C~fC~~  512 (567)
T PLN03086        469 EKHMKVFH----------------------EPLQCP-CGVVLEKEQMVQHQAST--CPLRLIT-----------CRFCGD  512 (567)
T ss_pred             HHHHHhcC----------------------CCccCC-CCCCcchhHHHhhhhcc--CCCCcee-----------CCCCCC
Confidence            57877764                      235555 66222457899999988  8889999           777877


Q ss_pred             hcc-----------hHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHH
Q psy2238         192 CFC-----------EDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       192 ~F~-----------~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      .|.           ...|..|... .+.+++.|..|++.|..+ .|..|+..
T Consensus       513 ~v~~g~~~~d~~d~~s~Lt~HE~~-CG~rt~~C~~Cgk~Vrlr-dm~~H~~~  562 (567)
T PLN03086        513 MVQAGGSAMDVRDRLRGMSEHESI-CGSRTAPCDSCGRSVMLK-EMDIHQIA  562 (567)
T ss_pred             ccccCccccchhhhhhhHHHHHHh-cCCcceEccccCCeeeeh-hHHHHHHH
Confidence            773           2377888777 599999999999988876 46678654

>PHA00733 hypothetical protein

Probab=98.89  E-value=1.5e-09  Score=85.04  Aligned_cols=82  Identities=13%  Similarity=0.072  Sum_probs=58.9

Q ss_pred             CceeecCCCC-CCCChHHHHHH--HHHhc-ccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEH--QASCQ-VLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H--~~~h~-~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      .+++.|.+|. .|.....|..|  ++.|. +.+++||.           |+.|++.| ....|..|++.|  +.+|.|+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~-----------C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~  104 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYV-----------CPLCLMPFSSSVSLKQHIRYT--EHSKVCPV  104 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCcc-----------CCCCCCcCCCHHHHHHHHhcC--CcCccCCC
Confidence            3555666666 45555555444  22211 13467888           99999999 555899998876  46899999


Q ss_pred             CCccccCchHHHHHHHHhcC
Q psy2238         216 CGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       216 C~k~f~~~~~L~~H~~~H~~  235 (311)
                      |++.|.....|.+|+...++
T Consensus       105 CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        105 CGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCccCCHHHHHHHHHHhcC
Confidence            99999999999999877553

>PHA02768 hypothetical protein; Provisional

Probab=98.89  E-value=6.3e-10  Score=72.39  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=37.7

Q ss_pred             cccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHH
Q psy2238         184 YSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLS  227 (311)
Q Consensus       184 ~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~  227 (311)
                      |.|+.||+.| ...+|..|+++|+  +||+|..|++.|.+.+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            5699999999 5559999999999  7999999999999988874

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.64  E-value=1.6e-08  Score=56.24  Aligned_cols=26  Identities=35%  Similarity=0.553  Sum_probs=19.2

Q ss_pred             HHHHHhhhhcCCCCccCCCCCccccC
Q psy2238         197 HARRKGFKYEKNKPIPCPKCGFETSQ  222 (311)
Q Consensus       197 ~l~~H~~~h~~~k~~~C~~C~k~f~~  222 (311)
                      +|.+|+++|++++||+|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            46777777777777777777777753

...

>PHA02768 hypothetical protein; Provisional

Probab=98.43  E-value=9.6e-08  Score=62.25  Aligned_cols=39  Identities=21%  Similarity=0.328  Sum_probs=34.0

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchH
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCED  196 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~  196 (311)
                      -|+|+.|| .|...++|..|+++|  +  ++|+           |..|++.|.+.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H--~--k~~k-----------c~~C~k~f~~~   44 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKH--N--TNLK-----------LSNCKRISLRT   44 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhc--C--Cccc-----------CCcccceeccc
Confidence            47899999 899999999999998  4  6888           88999998544

>PHA00733 hypothetical protein

Probab=98.43  E-value=1.9e-07  Score=73.22  Aligned_cols=52  Identities=19%  Similarity=0.228  Sum_probs=43.5

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcc-hHHHHHHhhhhcC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFC-EDHARRKGFKYEK  207 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~-~~~l~~H~~~h~~  207 (311)
                      .+||.|+.|+ .|.....|..|++.|    +.+|.           |.+|++.|. ...|..|+...|+
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h----~~~~~-----------C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRYT----EHSKV-----------CPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhcC----CcCcc-----------CCCCCCccCCHHHHHHHHHHhcC
Confidence            5678889999 899999999999976    35677           999999994 4599999887764

>KOG3993|consensus

Probab=98.41  E-value=1.7e-07  Score=84.69  Aligned_cols=81  Identities=16%  Similarity=0.307  Sum_probs=53.3

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchH-HHHHHhhhhc--------CC----
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCED-HARRKGFKYE--------KN----  208 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~-~l~~H~~~h~--------~~----  208 (311)
                      .|.|..|. +|.....|-+|.-.-  .---.|+           |++|+|+|+-. +|..|.|.|-        +.    
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~R--IV~vEYr-----------CPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k  333 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPR--IVHVEYR-----------CPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPK  333 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCe--eEEeeec-----------CCcccccccCchhhhhhhcccCCchhhhhcCCCChh
Confidence            36677777 676666666664322  1112244           66677777333 6666666551        11    


Q ss_pred             ---------------------CCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         209 ---------------------KPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 ---------------------k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                                           --|.|.+|+|.|.+...|++|+.+|+..
T Consensus       334 ~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  334 QAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             hhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence                                 2489999999999999999999998754

>PHA00616 hypothetical protein

Probab=98.34  E-value=2.2e-07  Score=57.61  Aligned_cols=32  Identities=16%  Similarity=0.112  Sum_probs=20.6

Q ss_pred             CccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      ||+|+.||+.|..+++|.+|+++|++++++..
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            46666666666666666666666666665544

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.22  E-value=7.5e-07  Score=49.46  Aligned_cols=25  Identities=24%  Similarity=0.463  Sum_probs=22.0

Q ss_pred             HHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcc
Q psy2238         157 DQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFC  194 (311)
Q Consensus       157 ~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~  194 (311)
                      +|.+|+++|  ++++||+           |++|+++|.
T Consensus         1 ~l~~H~~~H--~~~k~~~-----------C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTH--TGEKPYK-----------CPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHH--SSSSSEE-----------ESSSSEEES
T ss_pred             CHHHHhhhc--CCCCCCC-----------CCCCcCeeC
Confidence            589999999  9999999           888888874

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.21  E-value=1.8e-06  Score=57.10  Aligned_cols=49  Identities=20%  Similarity=0.427  Sum_probs=40.0

Q ss_pred             cccCCCchhcchHHHHHHhhhhcCC--CCccCCCCCccccCchHHHHHHHHhc
Q psy2238         184 YSCLRCKICFCEDHARRKGFKYEKN--KPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       184 ~~C~~C~k~F~~~~l~~H~~~h~~~--k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |.|++|++.|+...|..|....|..  +.+.||+|...+.  .+|.+|+..++
T Consensus         3 f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            6699999977888999998765543  6799999998765  48999998765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.18  E-value=1e-06  Score=62.76  Aligned_cols=46  Identities=15%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             CcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHh
Q psy2238         183 QYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSH  233 (311)
Q Consensus       183 ~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H  233 (311)
                      ||.|+.|++.| ...+|..|++.++.  ++.|+.|++.|.   .|..|+++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhccc
Confidence            46699999999 55599999985332  468999999998   588887553

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.97  E-value=4e-06  Score=45.04  Aligned_cols=23  Identities=35%  Similarity=0.658  Sum_probs=20.0

Q ss_pred             ccCCCCCccccCchHHHHHHHHh
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRSH  233 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~H  233 (311)
                      |+|+.|++.|.++..|.+|+++|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            67899999999999999998875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00616 hypothetical protein

Probab=97.90  E-value=5.1e-06  Score=51.55  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=30.5

Q ss_pred             CccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCC
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDF  103 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~  103 (311)
                      ||+|..||+.   |..+..|..|++.|+   +++++.|+.
T Consensus         1 pYqC~~CG~~---F~~~s~l~~H~r~~h---g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGI---FRKKKEVIEHLLSVH---KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHH---HhhHHHHHHHHHHhc---CCCccceeE
Confidence            6899999999   899999999999999   888988864

>KOG3993|consensus

Probab=97.80  E-value=7.9e-06  Score=74.20  Aligned_cols=174  Identities=14%  Similarity=0.098  Sum_probs=100.8

Q ss_pred             ccccCcCccccccccchhhc-ccC----CCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-h-hHHhH
Q psy2238          39 NMECDKCKRKQKNRAFCYFC-QSV----QRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-A-WICHG  111 (311)
Q Consensus        39 ~~~C~~C~~~f~~~~~c~~~-h~~----~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~-f~~~~  111 (311)
                      .|.|..|...|. ... .|. |.-    .-.|+|++|+|.   |+...+|..|.|.|. ...+ .-+   -+ . -....
T Consensus       267 dyiCqLCK~kYe-D~F-~LAQHrC~RIV~vEYrCPEC~KV---FsCPANLASHRRWHK-PR~e-aa~---a~~~P~k~~~  336 (500)
T KOG3993|consen  267 DYICQLCKEKYE-DAF-ALAQHRCPRIVHVEYRCPECDKV---FSCPANLASHRRWHK-PRPE-AAK---AGSPPPKQAV  336 (500)
T ss_pred             HHHHHHHHHhhh-hHH-HHhhccCCeeEEeeecCCccccc---ccCchhhhhhhcccC-Cchh-hhh---cCCCChhhhh
Confidence            377888888777 333 333 332    336888888888   888888888888776 1110 000   00 0 00000


Q ss_pred             HHHHHhhcCcCCCCcccccccccccccCCCceeecCCCC-CCCChHHHHHHHHHhcccCC-C---C-----------ccC
Q psy2238         112 RKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLES-E---N-----------YKC  175 (311)
Q Consensus       112 ~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~-k---~-----------~~C  175 (311)
                      .  -+.-..+          -.+.=....+..|.|.+|+ +|.....|+.|+.+|+.... +   +           +-|
T Consensus       337 ~--~rae~~e----------a~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~  404 (500)
T KOG3993|consen  337 E--TRAEVQE----------AERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFN  404 (500)
T ss_pred             h--hhhhhhh----------ccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccc
Confidence            0  0000000          0000011234589999999 89999999999999842221 1   0           112


Q ss_pred             CCCCCC------------------CCcccCCCchhcchH-HHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhc
Q psy2238         176 KSCNKL------------------GQYSCLRCKICFCED-HARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       176 ~~C~~~------------------~~~~C~~C~k~F~~~-~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      ..|.-.                  .-..|++|+-.+..+ .--.+-+.-+.+.-|.|.+|--.|.....|.+|+...+
T Consensus       405 ~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~H  482 (500)
T KOG3993|consen  405 QAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCH  482 (500)
T ss_pred             cccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcC
Confidence            222222                  124477777777444 33344444455677999999999999999999976644

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.69  E-value=8e-05  Score=49.16  Aligned_cols=52  Identities=25%  Similarity=0.427  Sum_probs=37.8

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhcC
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEK  207 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~  207 (311)
                      .|.|++|+ .|. ...|..|....+..+.+.+.           |++|...+.. +|..|+..+|+
T Consensus         2 ~f~CP~C~~~~~-~~~L~~H~~~~H~~~~~~v~-----------CPiC~~~~~~-~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGKGFS-ESSLVEHCEDEHRSESKNVV-----------CPICSSRVTD-NLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCCccC-HHHHHHHHHhHCcCCCCCcc-----------CCCchhhhhh-HHHHHHHHhcC
Confidence            47899999 544 57899998776333346677           8888877643 88899887764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=97.68  E-value=2.5e-05  Score=55.70  Aligned_cols=46  Identities=17%  Similarity=0.285  Sum_probs=36.5

Q ss_pred             CccccccccccccCCCHHHHHHhHhh-hccCCCcCcccCCCCh-hhHHhHHHHHHhhc
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAGV-FSTGMGMVGAICDFCE-AWICHGRKCLQTHA  119 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~~-h~~~~~~~~~~C~~C~-~f~~~~~~H~~~H~  119 (311)
                      ||.|.+|++.   |.+..+|..|++. |.      ++.|+.|+ .|. .+..|++++.
T Consensus         1 py~C~~Cgk~---F~s~s~Lk~H~r~~H~------~~~C~~CgKsF~-~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFT---TVTLFALKQHARRNHT------LTKCPVCNKSYR-RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCc---cCCHHHHHHHhhcccC------CCccCCCCCEeC-ChhhhhcccC
Confidence            6889999999   8999999999985 54      46899999 776 4567775443

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.58  E-value=5.2e-05  Score=40.74  Aligned_cols=24  Identities=29%  Similarity=0.671  Sum_probs=18.3

Q ss_pred             ccCCCCCccccCchHHHHHHHHhc
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |.|++|++.|.+...|..|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            678888888888888888888763

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.40  E-value=6.6e-05  Score=41.90  Aligned_cols=25  Identities=36%  Similarity=0.604  Sum_probs=19.8

Q ss_pred             CccCCCCCccccCchHHHHHHHHhc
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      ||+|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5778888888888888888887765

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.25  E-value=0.00016  Score=38.61  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=21.1

Q ss_pred             ccccccccccccCCCHHHHHHhHhhh
Q psy2238          65 PQCGHCGKIKCMLKTGDCVIKHAGVF   90 (311)
Q Consensus        65 ~~C~~C~k~~~~f~~~~~L~~H~~~h   90 (311)
                      |.|++|++.   |.+...|..|++.|
T Consensus         1 y~C~~C~~~---f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKS---FSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEE---ESSHHHHHHHHHHH
T ss_pred             CCCCCCCCc---cCCHHHHHHHHhHC
Confidence            689999999   99999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.25  E-value=0.00019  Score=53.33  Aligned_cols=72  Identities=19%  Similarity=0.284  Sum_probs=22.6

Q ss_pred             ecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccC
Q psy2238         145 KCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQ  222 (311)
Q Consensus       145 ~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~  222 (311)
                      +|.+|+ .|.....|..|+...  ++-..              + ....+ ....++.+.... -...+.|..|++.|..
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~--H~~~~--------------~-~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s   62 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKK--HGFDI--------------P-DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRS   62 (100)
T ss_dssp             ------------------------------------------------------------------SSEEBSSSS-EESS
T ss_pred             Cccccccccccccccccccccc--ccccc--------------c-cccccccccccccccccc-cCCCCCCCccCCCCcC
Confidence            589999 899999999999765  22110              0 00111 112344433322 1237999999999999


Q ss_pred             chHHHHHHHHhc
Q psy2238         223 TKDLSMSTRSHK  234 (311)
Q Consensus       223 ~~~L~~H~~~H~  234 (311)
                      ...|..||+.+.
T Consensus        63 ~~~l~~Hm~~~~   74 (100)
T PF12756_consen   63 REALQEHMRSKH   74 (100)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHcCcc
Confidence            999999999754

>smart00355 ZnF_C2H2 zinc finger

Probab=97.02  E-value=0.00062  Score=36.98  Aligned_cols=24  Identities=29%  Similarity=0.589  Sum_probs=19.7

Q ss_pred             ccCCCCCccccCchHHHHHHHHhc
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |.|+.|++.|.....|..|+++|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            578888888888888888888764

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.86  E-value=0.00032  Score=61.71  Aligned_cols=52  Identities=19%  Similarity=0.401  Sum_probs=40.1

Q ss_pred             CCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhc-------------------CCCCccCCCCCccccCchHHHHH
Q psy2238         170 SENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYE-------------------KNKPIPCPKCGFETSQTKDLSMS  229 (311)
Q Consensus       170 ~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~-------------------~~k~~~C~~C~k~f~~~~~L~~H  229 (311)
                      +|||+|+         -.-|.|++ .+..|+.|+.-=|                   .+|||.|++|+|+|.....|+-|
T Consensus       347 ~KpykCp---------V~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYH  417 (423)
T COG5189         347 GKPYKCP---------VEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH  417 (423)
T ss_pred             CceecCC---------CCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceec
Confidence            4777755         45699999 4558888876211                   24999999999999999999988


Q ss_pred             H
Q psy2238         230 T  230 (311)
Q Consensus       230 ~  230 (311)
                      .
T Consensus       418 r  418 (423)
T COG5189         418 R  418 (423)
T ss_pred             c
Confidence            4

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.84  E-value=0.00099  Score=42.37  Aligned_cols=33  Identities=24%  Similarity=0.597  Sum_probs=22.7

Q ss_pred             cCCCCccCCCCCccccCchHHHHHHHHhcCCCC
Q psy2238         206 EKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       206 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      ..+.|-.|++|+..+.+..+|++|+.++++.+|
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            456888999999999999999999988877765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.77  E-value=0.00087  Score=35.76  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             ccccccccccccCCCHHHHHHhHhhhc
Q psy2238          65 PQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        65 ~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |.|++|++.   |.+...|+.|++.|+
T Consensus         1 ~~C~~C~~~---~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKS---FRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-E---ESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCc---CCcHHHHHHHHHhhC
Confidence            679999999   899999999998764

...

>KOG2231|consensus

Probab=96.67  E-value=0.005  Score=60.36  Aligned_cols=131  Identities=19%  Similarity=0.262  Sum_probs=74.3

Q ss_pred             cccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh----hhHHhH----HHHHHhhcCcCCCCcccccccccccc
Q psy2238          66 QCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE----AWICHG----RKCLQTHACTCPLQDAVCLECERGVW  137 (311)
Q Consensus        66 ~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~----~f~~~~----~~H~~~H~~~~~~~~~~C~~C~~~f~  137 (311)
                      .|..| ..   |.+...|+.|+..-+     +.+.|.+|-    .|....    +.-++.|...      -|. +.+.|.
T Consensus       117 ~~~~c-~~---~~s~~~Lk~H~~~~H-----~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~------gd~-d~~s~r  180 (669)
T KOG2231|consen  117 ECLHC-TE---FKSVENLKNHMRDQH-----KLHLCSLCLQNLKIFINERKLYTRAELNLHLMF------GDP-DDESCR  180 (669)
T ss_pred             CCccc-cc---hhHHHHHHHHHHHhh-----hhhccccccccceeeeeeeehehHHHHHHHHhc------CCC-cccccc
Confidence            35555 44   568889999997555     367788776    233211    1223333221      111 233332


Q ss_pred             cCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC-
Q psy2238         138 DHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP-  214 (311)
Q Consensus       138 ~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~-  214 (311)
                      -    --.|.+|. .|.....|.+|++.+  +    |.|-.|++.     +.++..| ....|..|-+.+|    |.|. 
T Consensus       181 G----hp~C~~C~~~fld~~el~rH~~~~--h----~~chfC~~~-----~~~neyy~~~~dLe~HfR~~H----flCE~  241 (669)
T KOG2231|consen  181 G----HPLCKFCHERFLDDDELYRHLRFD--H----EFCHFCDYK-----TGQNEYYNDYDDLEEHFRKGH----FLCEE  241 (669)
T ss_pred             C----CccchhhhhhhccHHHHHHhhccc--e----eheeecCcc-----cccchhcccchHHHHHhhhcC----ccccc
Confidence            2    34699999 899999999999876  2    333332210     1223344 4458888888777    7776 


Q ss_pred             -CCC-ccccCchHHHHHHH
Q psy2238         215 -KCG-FETSQTKDLSMSTR  231 (311)
Q Consensus       215 -~C~-k~f~~~~~L~~H~~  231 (311)
                       .|. +.|.....+..|++
T Consensus       242 ~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  242 EFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             cccccceeeehhHHHHHHH
Confidence             564 45555444444444

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.44  E-value=0.0016  Score=36.19  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             CccccccccccccCCCHHHHHHhHhhhc
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      +|.|.+|++.   |.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~---F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKT---FSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEE---ESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCc---cCChhHHHHHhHHhc
Confidence            6899999999   999999999998876

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.30  E-value=0.0028  Score=34.13  Aligned_cols=23  Identities=30%  Similarity=0.764  Sum_probs=16.5

Q ss_pred             ccCCCCCccccCchHHHHHHHHhc
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |+|+.|+.... ...|.+|+++|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            67888888887 778888887764

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.19  E-value=0.0021  Score=34.88  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=18.9

Q ss_pred             ccCCCCCccccCchHHHHHHHHh
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRSH  233 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~H  233 (311)
                      |.|.+|++.|.....|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57888888888888888888654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.15  E-value=0.0026  Score=56.15  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=41.1

Q ss_pred             CCceeecCC--CC-CCCChHHHHHHHHHhcccCCCCccCCCCCC-------CCCcccCCCchhcchH-HHHHHh
Q psy2238         140 GGRVYKCCF--CE-GFLCEDDQFEHQASCQVLESENYKCKSCNK-------LGQYSCLRCKICFCED-HARRKG  202 (311)
Q Consensus       140 ~~~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~-------~~~~~C~~C~k~F~~~-~l~~H~  202 (311)
                      .++||+|++  |. ++.....|+-|+.-- |-..+...-+.-.+       .+||.|++|+|++... .|+.|.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhG-H~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHG-HQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhcc-ccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            569999988  66 699999999997543 22222222211111       1788899999999666 666653

>PRK04860 hypothetical protein; Provisional

Probab=96.00  E-value=0.003  Score=51.36  Aligned_cols=38  Identities=21%  Similarity=0.411  Sum_probs=28.2

Q ss_pred             CcccCCCchhcchHHHHHHhhhhcCCCCccCCCCCccccCc
Q psy2238         183 QYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQT  223 (311)
Q Consensus       183 ~~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~  223 (311)
                      +|.|. |+.  ....+.+|.++|+++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~--~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE--HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC--eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            45576 776  444777888888888888888888877654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.89  E-value=0.0076  Score=38.39  Aligned_cols=31  Identities=10%  Similarity=0.036  Sum_probs=22.3

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHHhcccCCCC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQASCQVLESEN  172 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~  172 (311)
                      .+.|..|++|+ .+.+..+|++|+.++  ++.+|
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~--H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIR--HFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHH--TTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHH--hcccC
Confidence            56789999999 899999999999887  66554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.53  E-value=0.012  Score=31.57  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=21.3

Q ss_pred             ccccccccccccCCCHHHHHHhHhhhc
Q psy2238          65 PQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        65 ~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |.|..|++.   |.....|..|++.|.
T Consensus         1 ~~C~~C~~~---f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKV---FKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcch---hCCHHHHHHHHHHhc
Confidence            679999999   899999999998775

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.35  E-value=0.011  Score=43.64  Aligned_cols=72  Identities=19%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             cccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCChhhHHhHHHHHHhhcCcCCCCcccccccccccccCCCceee
Q psy2238          66 QCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYK  145 (311)
Q Consensus        66 ~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~f~~~~~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~  145 (311)
                      +|..|+..   |.+...|..|+...+   +..   .+....+.....  +..+...                 .....+.
T Consensus         1 ~C~~C~~~---f~~~~~l~~H~~~~H---~~~---~~~~~~l~~~~~--~~~~~~~-----------------~~~~~~~   52 (100)
T PF12756_consen    1 QCLFCDES---FSSVDDLLQHMKKKH---GFD---IPDQKYLVDPNR--LLNYLRK-----------------KVKESFR   52 (100)
T ss_dssp             ----------------------------------------------------------------------------SSEE
T ss_pred             Cccccccc---ccccccccccccccc---ccc---cccccccccccc--ccccccc-----------------ccCCCCC
Confidence            48899999   888999999998655   211   000000110000  0000001                 1123688


Q ss_pred             cCCCC-CCCChHHHHHHHHHh
Q psy2238         146 CCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       146 C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      |.+|+ .|.....|..||+.+
T Consensus        53 C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   53 CPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             BSSSS-EESSHHHHHHHHHHT
T ss_pred             CCccCCCCcCHHHHHHHHcCc
Confidence            99999 899999999999986

>KOG2893|consensus

Probab=95.15  E-value=0.0071  Score=51.31  Aligned_cols=46  Identities=24%  Similarity=0.309  Sum_probs=37.8

Q ss_pred             cCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHH-HHHhcC
Q psy2238         186 CLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMS-TRSHKF  235 (311)
Q Consensus       186 C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~  235 (311)
                      |.+|++-| .-+-|.+|++.    |-|+|-+|.|...+--.|..| |.+|..
T Consensus        13 cwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhke   60 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHKE   60 (341)
T ss_pred             eeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhhh
Confidence            99999999 44578877664    559999999998888889888 777753

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.82  E-value=0.0064  Score=33.75  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=16.1

Q ss_pred             ccCCCCCccccCchHHHHHHHH
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6677777777777777777654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.54  E-value=0.021  Score=30.84  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             ccccccccccccCCCHHHHHHhHhhh
Q psy2238          65 PQCGHCGKIKCMLKTGDCVIKHAGVF   90 (311)
Q Consensus        65 ~~C~~C~k~~~~f~~~~~L~~H~~~h   90 (311)
                      |.|.+|++.   |.+...|..|++.+
T Consensus         1 ~~C~~C~~~---f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKS---FSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEE---ESSHHHHHHHHTTH
T ss_pred             CCCCCCCCC---cCCHHHHHHHHCcC
Confidence            579999999   89999999999865

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.53  E-value=0.027  Score=30.12  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=17.5

Q ss_pred             eecCCCC-CCCChHHHHHHHHHh
Q psy2238         144 YKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       144 ~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      |+|+.|. ... ...|.+|+++|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            7899999 776 88999999986

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.47  E-value=0.034  Score=30.28  Aligned_cols=21  Identities=29%  Similarity=0.730  Sum_probs=12.1

Q ss_pred             ccCCCCCccccCchHHHHHHHH
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      .+|+.|++.| ....|.+|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3566666666 55556666543

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=94.39  E-value=0.04  Score=47.47  Aligned_cols=45  Identities=20%  Similarity=0.539  Sum_probs=22.1

Q ss_pred             cCCCCCCC------CCcccCCCchhcchHHHHHHhhhh--cCCCCccCCCCCc
Q psy2238         174 KCKSCNKL------GQYSCLRCKICFCEDHARRKGFKY--EKNKPIPCPKCGF  218 (311)
Q Consensus       174 ~C~~C~~~------~~~~C~~C~k~F~~~~l~~H~~~h--~~~k~~~C~~C~k  218 (311)
                      .|-+|.+.      +.|+|..|....--.....|+..-  .....|+|.-|.+
T Consensus       127 ~C~EC~R~vw~hGGrif~CsfC~~flCEDDQFEHQAsCQvLe~E~~KC~SCNr  179 (314)
T PF06524_consen  127 VCIECERGVWDHGGRIFKCSFCDNFLCEDDQFEHQASCQVLESETFKCQSCNR  179 (314)
T ss_pred             EeeeeecccccCCCeEEEeecCCCeeeccchhhhhhhhhhhhccccccccccc
Confidence            35555554      556677777655333333444321  1123455655543

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>KOG2231|consensus

Probab=94.33  E-value=0.064  Score=52.87  Aligned_cols=98  Identities=19%  Similarity=0.250  Sum_probs=57.2

Q ss_pred             ccccccccccccCCCceeecCCCCCCCChHHHHHHHH-HhcccCCCCccCCCCCCC-C----------------------
Q psy2238         127 AVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQA-SCQVLESENYKCKSCNKL-G----------------------  182 (311)
Q Consensus       127 ~~C~~C~~~f~~~~~~~~~C~~C~~f~~~~~L~~H~~-~h~~~~~k~~~C~~C~~~-~----------------------  182 (311)
                      +.|.+|+..|...- .-..|..|-.|.....|+.|++ .|     +.+.|.+|-.. +                      
T Consensus       100 ~~C~~C~~~~~~~~-~~~~~~~c~~~~s~~~Lk~H~~~~H-----~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd  173 (669)
T KOG2231|consen  100 HSCHICDRRFRALY-NKKECLHCTEFKSVENLKNHMRDQH-----KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGD  173 (669)
T ss_pred             hhcCccccchhhhc-ccCCCccccchhHHHHHHHHHHHhh-----hhhccccccccceeeeeeeehehHHHHHHHHhcCC
Confidence            67888888774321 1124777755777888888884 44     56677776555 1                      


Q ss_pred             --------CcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC------CccccCchHHHHHHHHhc
Q psy2238         183 --------QYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC------GFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       183 --------~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C------~k~f~~~~~L~~H~~~H~  234 (311)
                              --.|..|...| ....|.+|++.+|    |.|-.|      ..-|.....|..|-|.++
T Consensus       174 ~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  174 PDDESCRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             CccccccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence                    12356666666 4446666666555    444444      234455566666655443

>PRK04860 hypothetical protein; Provisional

Probab=93.66  E-value=0.055  Score=44.07  Aligned_cols=36  Identities=22%  Similarity=0.487  Sum_probs=29.0

Q ss_pred             ceeecCCCCCCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc
Q psy2238         142 RVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF  193 (311)
Q Consensus       142 ~~~~C~~C~~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F  193 (311)
                      -+|.|. |+.  ....+.+|.++|  +++++|.           |..|+..|
T Consensus       118 ~~Y~C~-C~~--~~~~~rrH~ri~--~g~~~Yr-----------C~~C~~~l  153 (160)
T PRK04860        118 FPYRCK-CQE--HQLTVRRHNRVV--RGEAVYR-----------CRRCGETL  153 (160)
T ss_pred             EEEEcC-CCC--eeCHHHHHHHHh--cCCccEE-----------CCCCCcee
Confidence            579998 985  456689999999  9999999           66666665

>KOG2785|consensus

Probab=93.50  E-value=0.22  Score=45.44  Aligned_cols=58  Identities=16%  Similarity=0.112  Sum_probs=44.4

Q ss_pred             CCcccCCCchhcch-HHHHHHhhhhcCC-----------------------CCccCCCCC---ccccCchHHHHHHHH-h
Q psy2238         182 GQYSCLRCKICFCE-DHARRKGFKYEKN-----------------------KPIPCPKCG---FETSQTKDLSMSTRS-H  233 (311)
Q Consensus       182 ~~~~C~~C~k~F~~-~~l~~H~~~h~~~-----------------------k~~~C~~C~---k~f~~~~~L~~H~~~-H  233 (311)
                      -|-.|-.|++.|.. ...+.||..+|+-                       .-|.|-.|.   +.|.+-.+.+.||.. -
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~  244 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKG  244 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhcc
Confidence            35789999999954 4889999988873                       126788888   999999999999864 2


Q ss_pred             cCCCCC
Q psy2238         234 KFGRQQ  239 (311)
Q Consensus       234 ~~~~~~  239 (311)
                      +-.-+|
T Consensus       245 HCkl~y  250 (390)
T KOG2785|consen  245 HCKLPY  250 (390)
T ss_pred             CcccCC
Confidence            224455

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=92.63  E-value=0.062  Score=29.68  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             ccccccccccccCCCHHHHHHhHhh
Q psy2238          65 PQCGHCGKIKCMLKTGDCVIKHAGV   89 (311)
Q Consensus        65 ~~C~~C~k~~~~f~~~~~L~~H~~~   89 (311)
                      |.|.+|++.   |.+...|..|++.
T Consensus         2 ~~C~~C~k~---f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKY---FSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBB---BSSHHHHHCCTTS
T ss_pred             CCcccCCCC---cCCHHHHHHHHcc
Confidence            679999999   8999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.16  E-value=0.1  Score=28.35  Aligned_cols=20  Identities=20%  Similarity=0.313  Sum_probs=17.0

Q ss_pred             ccCCCchhcchHHHHHHhhh
Q psy2238         185 SCLRCKICFCEDHARRKGFK  204 (311)
Q Consensus       185 ~C~~C~k~F~~~~l~~H~~~  204 (311)
                      .|+.|++.|....|.+|..+
T Consensus         4 ~C~~CgR~F~~~~l~~H~~~   23 (25)
T PF13913_consen    4 PCPICGRKFNPDRLEKHEKI   23 (25)
T ss_pred             cCCCCCCEECHHHHHHHHHh
Confidence            49999999988899998753

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.88  E-value=0.1  Score=30.52  Aligned_cols=23  Identities=9%  Similarity=0.268  Sum_probs=19.0

Q ss_pred             CccCCCCCccccCchHHHHHHHH
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      +|.|.+|++.|.....|..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57899999999988888888753

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=91.71  E-value=0.11  Score=39.37  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=25.1

Q ss_pred             ccccccccccccCCCceeecCCCC-CCCCh
Q psy2238         127 AVCLECERGVWDHGGRVYKCCFCE-GFLCE  155 (311)
Q Consensus       127 ~~C~~C~~~f~~~~~~~~~C~~C~-~f~~~  155 (311)
                      ..|+.||+.|...+..|..|+.|| .|.-.
T Consensus        10 R~Cp~CG~kFYDLnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence            679999999999888999999999 67654

The function of members of this family is unknown.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.77  E-value=2.2  Score=38.61  Aligned_cols=116  Identities=18%  Similarity=0.346  Sum_probs=71.0

Q ss_pred             cccCCC--Ch---hhHHhHHHHHHhhcCcCCCCccccccccc---ccccC--------------------CCc-eeecCC
Q psy2238          98 GAICDF--CE---AWICHGRKCLQTHACTCPLQDAVCLECER---GVWDH--------------------GGR-VYKCCF  148 (311)
Q Consensus        98 ~~~C~~--C~---~f~~~~~~H~~~H~~~~~~~~~~C~~C~~---~f~~~--------------------~~~-~~~C~~  148 (311)
                      .|.|+.  |.   .+...++.|.+..++.     +-|.+|-.   .|+..                    |-+ .-.|.+
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~-----~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~F  225 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF-----VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIF  225 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc-----EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhh
Confidence            377875  44   2334456777776665     77887753   45531                    111 236999


Q ss_pred             CC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC--CCC----ccc
Q psy2238         149 CE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP--KCG----FET  220 (311)
Q Consensus       149 C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~--~C~----k~f  220 (311)
                      |. .|-....|.+|+|..  + |+   |-+|+++.|-    =...| ....|..|.+.-|    |.|.  .|.    ..|
T Consensus       226 C~~~FYdDDEL~~HcR~~--H-E~---ChICD~v~p~----~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf  291 (493)
T COG5236         226 CKIYFYDDDELRRHCRLR--H-EA---CHICDMVGPI----RYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVF  291 (493)
T ss_pred             ccceecChHHHHHHHHhh--h-hh---hhhhhccCcc----chhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEe
Confidence            99 899999999999875  2 33   4444444221    12345 3447777766444    6663  242    478


Q ss_pred             cCchHHHHHHHH
Q psy2238         221 SQTKDLSMSTRS  232 (311)
Q Consensus       221 ~~~~~L~~H~~~  232 (311)
                      .....|..|+..
T Consensus       292 ~~~~el~~h~~~  303 (493)
T COG5236         292 PYHTELLEHLTR  303 (493)
T ss_pred             ccHHHHHHHHHH
Confidence            889999999754

>KOG1146|consensus

Probab=89.51  E-value=0.19  Score=52.76  Aligned_cols=71  Identities=21%  Similarity=0.323  Sum_probs=46.3

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhh------hhcCCCCccC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGF------KYEKNKPIPC  213 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~------~h~~~k~~~C  213 (311)
                      .+.|+|+.|+ .|.....|-.|||.-++..+-.|.                     ..-..|.+      .--+.+||.|
T Consensus       463 ~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c---------------------~~gq~~~~~arg~~~~~~~~p~~C  521 (1406)
T KOG1146|consen  463 FKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYC---------------------KAGQNHPRLARGEVYRCPGKPYPC  521 (1406)
T ss_pred             cccccCCccchhhhhHHHhhhcccccccccchhHh---------------------HhccccccccccccccCCCCcccc
Confidence            4678888888 788888888888874222222111                     01111111      1123488999


Q ss_pred             CCCCccccCchHHHHHHHH
Q psy2238         214 PKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       214 ~~C~k~f~~~~~L~~H~~~  232 (311)
                      ..|..+|+.+.+|.+|+..
T Consensus       522 ~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  522 RACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             eeeeeeeecchHHHHHHHH
Confidence            9999999999999999763

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=89.31  E-value=0.096  Score=49.03  Aligned_cols=60  Identities=22%  Similarity=0.299  Sum_probs=53.4

Q ss_pred             CcccCCCchhcchH-HHHHHhh--hhcCC--CCccCC--CCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         183 QYSCLRCKICFCED-HARRKGF--KYEKN--KPIPCP--KCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       183 ~~~C~~C~k~F~~~-~l~~H~~--~h~~~--k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      ++.|..|...|+.. .|..|.+  .|+++  +|+.|+  .|++.|.+...|..|..+|....++...
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            57899999999555 8999999  89999  999999  8999999999999999999988766653

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=88.88  E-value=0.33  Score=32.11  Aligned_cols=9  Identities=22%  Similarity=0.715  Sum_probs=3.8

Q ss_pred             ccccccccc
Q psy2238         128 VCLECERGV  136 (311)
Q Consensus       128 ~C~~C~~~f  136 (311)
                      .|..|+...
T Consensus         9 ~CtSCg~~i   17 (59)
T PRK14890          9 KCTSCGIEI   17 (59)
T ss_pred             cccCCCCcc
Confidence            344444433

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.80  E-value=0.33  Score=30.56  Aligned_cols=27  Identities=22%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             cccccccccccccCCC-ceeecCCCC-CC
Q psy2238         126 DAVCLECERGVWDHGG-RVYKCCFCE-GF  152 (311)
Q Consensus       126 ~~~C~~C~~~f~~~~~-~~~~C~~C~-~f  152 (311)
                      .|.|..||..|.-... ..+.|+.|| .+
T Consensus         3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEYGTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCCCCceECCCCCCeE
Confidence            4888899888755422 278999999 54

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=87.14  E-value=0.28  Score=28.53  Aligned_cols=24  Identities=33%  Similarity=0.883  Sum_probs=15.2

Q ss_pred             cccCCCchhcchHHHHHHhhhhcCCCCccCCCCCc
Q psy2238         184 YSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGF  218 (311)
Q Consensus       184 ~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~~C~k  218 (311)
                      |.|.+||..+....           .|+.||+|+.
T Consensus         2 ~~C~~CGy~y~~~~-----------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE-----------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc-----------CCCcCcCCCC
Confidence            45777776662221           6778888864

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=87.01  E-value=0.41  Score=36.94  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=25.5

Q ss_pred             ccccccccccccCCCceeecCCCC-CCCCh
Q psy2238         127 AVCLECERGVWDHGGRVYKCCFCE-GFLCE  155 (311)
Q Consensus       127 ~~C~~C~~~f~~~~~~~~~C~~C~-~f~~~  155 (311)
                      ..|+.||+.|...+..|..|+.|| .|.-.
T Consensus        10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDLNRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCccccccCCCCccCCCcCCccCcc
Confidence            689999999999999999999999 77554

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=86.92  E-value=0.54  Score=27.36  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=19.6

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHh
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      +|.|++|+ .|.....+..|+...
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            57899999 899999999998653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=86.14  E-value=0.38  Score=31.85  Aligned_cols=33  Identities=36%  Similarity=1.079  Sum_probs=18.5

Q ss_pred             CCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhcCCCCccCCCCCc
Q psy2238         171 ENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGF  218 (311)
Q Consensus       171 k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~~C~k  218 (311)
                      -.|.|+.||..-.+.|..|.+.               ..+|.|+.||.
T Consensus        24 ~~F~CPnCG~~~I~RC~~CRk~---------------~~~Y~CP~CGF   56 (59)
T PRK14890         24 VKFLCPNCGEVIIYRCEKCRKQ---------------SNPYTCPKCGF   56 (59)
T ss_pred             CEeeCCCCCCeeEeechhHHhc---------------CCceECCCCCC
Confidence            3466555555544444444322               26788888874

>KOG2893|consensus

Probab=86.13  E-value=0.14  Score=43.73  Aligned_cols=49  Identities=20%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             CccccCcCccccccccchhhcccCCCCccccccccccccCCCHHHHHHhHh-hhc
Q psy2238          38 ANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAG-VFS   91 (311)
Q Consensus        38 ~~~~C~~C~~~f~~~~~c~~~h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~-~h~   91 (311)
                      |+| |..|++-|..... ++.|...+.|+|.+|.|.   +.+--.|..|.. +|.
T Consensus        10 kpw-cwycnrefddeki-liqhqkakhfkchichkk---l~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   10 KPW-CWYCNREFDDEKI-LIQHQKAKHFKCHICHKK---LFSGPGLSIHCMQVHK   59 (341)
T ss_pred             Cce-eeecccccchhhh-hhhhhhhccceeeeehhh---hccCCCceeehhhhhh
Confidence            444 8888888886666 666877888888888887   555555666643 443

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=85.54  E-value=0.56  Score=27.13  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=17.9

Q ss_pred             ccccccccccccCCCceeecCCCC-C
Q psy2238         127 AVCLECERGVWDHGGRVYKCCFCE-G  151 (311)
Q Consensus       127 ~~C~~C~~~f~~~~~~~~~C~~C~-~  151 (311)
                      |.|..|+..+......+.+|+.|| .
T Consensus         1 Y~C~~Cg~~~~~~~~~~irC~~CG~R   26 (32)
T PF03604_consen    1 YICGECGAEVELKPGDPIRCPECGHR   26 (32)
T ss_dssp             EBESSSSSSE-BSTSSTSSBSSSS-S
T ss_pred             CCCCcCCCeeEcCCCCcEECCcCCCe
Confidence            567788887776666677888888 5

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=85.12  E-value=0.22  Score=46.55  Aligned_cols=55  Identities=15%  Similarity=0.293  Sum_probs=43.7

Q ss_pred             CCccccccccccccCCCHHHHHHhHh--hhccCCCc--CcccCC--CCh-hhHHhH--HHHHHhhcCcCC
Q psy2238          63 RLPQCGHCGKIKCMLKTGDCVIKHAG--VFSTGMGM--VGAICD--FCE-AWICHG--RKCLQTHACTCP  123 (311)
Q Consensus        63 k~~~C~~C~k~~~~f~~~~~L~~H~~--~h~~~~~~--~~~~C~--~C~-~f~~~~--~~H~~~H~~~~~  123 (311)
                      .++.|..|...   |.....|..|.+  .|.   ++  +++.|+  .|+ .|....  ..|..+|.+..+
T Consensus       288 ~~~~~~~~~~~---~s~~~~l~~~~~~~~h~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (467)
T COG5048         288 LPIKSKQCNIS---FSRSSPLTRHLRSVNHS---GESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISP  351 (467)
T ss_pred             cCCCCccccCC---ccccccccccccccccc---cccCCceeeeccCCCccccccccccCCcccccCCCc
Confidence            46889999999   888899999999  788   77  899999  798 665444  477888877743

>TIGR00622 ssl1 transcription factor ssl1

Probab=84.66  E-value=1.5  Score=33.20  Aligned_cols=102  Identities=13%  Similarity=0.185  Sum_probs=57.2

Q ss_pred             ccccccccccccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCC-CCCCCCCcccCCCchhcchHHHHHHhhh
Q psy2238         127 AVCLECERGVWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCK-SCNKLGQYSCLRCKICFCEDHARRKGFK  204 (311)
Q Consensus       127 ~~C~~C~~~f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~-~C~~~~~~~C~~C~k~F~~~~l~~H~~~  204 (311)
                      |.|+.|+...   -+.|..|++|+ .......|.+-.  |+--.-++|.=- .=.......|--|...|....... ...
T Consensus         2 Y~CPrC~skv---C~LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~-~~~   75 (112)
T TIGR00622         2 YFCPQCRAKV---CELPVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP-FDE   75 (112)
T ss_pred             ccCCCCCCCc---cCCCCcCCcCCCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCCCCccccc-ccc
Confidence            5666665432   24678899999 776666666542  311122334200 000001223888888884331100 000


Q ss_pred             hcCCCCccCCCCCccccCchHHHHHHHHhc
Q psy2238         205 YEKNKPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       205 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      ......|.|+.|...|-..-.+-.|...|.
T Consensus        76 ~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        76 LKDSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             cccccceeCCCCCCccccccchhhhhhccC
Confidence            223356899999999988888888877775

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=84.21  E-value=0.71  Score=28.83  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=19.3

Q ss_pred             ccccccccccccCCCceeecCCCC-C
Q psy2238         127 AVCLECERGVWDHGGRVYKCCFCE-G  151 (311)
Q Consensus       127 ~~C~~C~~~f~~~~~~~~~C~~C~-~  151 (311)
                      |.|..||..|......+..|+.|| .
T Consensus         3 Y~C~~Cg~~~~~~~~~~irC~~CG~r   28 (44)
T smart00659        3 YICGECGRENEIKSKDVVRCRECGYR   28 (44)
T ss_pred             EECCCCCCEeecCCCCceECCCCCce
Confidence            778888887776666778888888 5

present in RNA polymerase I, II and III

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=84.09  E-value=1.5  Score=33.08  Aligned_cols=25  Identities=28%  Similarity=0.567  Sum_probs=22.5

Q ss_pred             ccC----CCCCccccCchHHHHHHHHhcC
Q psy2238         211 IPC----PKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       211 ~~C----~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      |.|    +.|+..+.+...|.+|.+.+++
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            789    9999999999999999988764

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PHA00626 hypothetical protein

Probab=83.09  E-value=0.88  Score=29.66  Aligned_cols=14  Identities=29%  Similarity=0.809  Sum_probs=7.7

Q ss_pred             CCccCCCCCccccC
Q psy2238         209 KPIPCPKCGFETSQ  222 (311)
Q Consensus       209 k~~~C~~C~k~f~~  222 (311)
                      ..|+|+.|+..|+.
T Consensus        22 nrYkCkdCGY~ft~   35 (59)
T PHA00626         22 DDYVCCDCGYNDSK   35 (59)
T ss_pred             cceEcCCCCCeech
Confidence            34566666655553

>PF11596 DUF3246: Protein of unknown function (DUF3246); InterPro: IPR021642 This is a small family of fungal proteins one of whose members, A3LUS4 from SWISSPROT from Pichia stipitis is described as being an extremely serine rich protein-mucin-like protein

Probab=81.63  E-value=0.94  Score=38.39  Aligned_cols=26  Identities=38%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             CCCCCCCCcCCCCCCCCCccCCCCCC
Q psy2238         285 DYDDEDDDYDVGGGYSGFSYGGGGAT  310 (311)
Q Consensus       285 ~~dd~ddd~d~~~~~~~~~~~~g~~~  310 (311)
                      .+|.+||+++.+|+++|+++++|.|+
T Consensus       213 p~d~edD~y~~~gsGsGssgs~~SgS  238 (241)
T PF11596_consen  213 PDDWEDDGYEGEGSGSGSSGSGSSGS  238 (241)
T ss_pred             cccccCCcceeecccccCCCCCCCcC
Confidence            55677888888888888777777654

>KOG2186|consensus

Probab=81.38  E-value=0.77  Score=39.66  Aligned_cols=49  Identities=14%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             eecCCCCCCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhc
Q psy2238         144 YKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYE  206 (311)
Q Consensus       144 ~~C~~C~~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~  206 (311)
                      |.|.+||-...+-.|.+|+-..  ++ .-|.           |-.|++.|.+.....|....+
T Consensus         4 FtCnvCgEsvKKp~vekH~srC--rn-~~fS-----------CIDC~k~F~~~sYknH~kCIT   52 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQVEKHMSRC--RN-AYFS-----------CIDCGKTFERVSYKNHTKCIT   52 (276)
T ss_pred             EehhhhhhhccccchHHHHHhc--cC-CeeE-----------Eeecccccccchhhhhhhhcc
Confidence            4555555555555555555554  33 3333           555555554455555544443

>KOG1146|consensus

Probab=81.33  E-value=0.49  Score=49.90  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=23.6

Q ss_pred             hcCCCCccCCCCCccccCchHHHHHHHHhc
Q psy2238         205 YEKNKPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       205 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      +-..++| |+.|...|.....|..||++-.
T Consensus      1324 ~~d~~~~-c~~c~~~~~~~~alqihm~~~~ 1352 (1406)
T KOG1146|consen 1324 VPDCTYH-CLACEVLLSGREALQIHMRSSA 1352 (1406)
T ss_pred             Ccccccc-chHHHhhcchhHHHHHHHHHhh
Confidence            3334667 9999999999999999998743

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=81.01  E-value=1  Score=24.64  Aligned_cols=8  Identities=38%  Similarity=0.970  Sum_probs=4.5

Q ss_pred             cCCCchhc
Q psy2238         186 CLRCKICF  193 (311)
Q Consensus       186 C~~C~k~F  193 (311)
                      |+.||..|
T Consensus        17 Cp~CG~~F   24 (26)
T PF10571_consen   17 CPHCGYDF   24 (26)
T ss_pred             CCCCCCCC
Confidence            55555555

Several members are annotated as putative helicases.

>KOG2785|consensus

Probab=80.33  E-value=3  Score=38.29  Aligned_cols=80  Identities=18%  Similarity=0.113  Sum_probs=47.6

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHhcccCC---CCccCCCCCCCCCcccCCCchhcchHHHHH--Hhhh--hcCCCCccCC
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASCQVLES---ENYKCKSCNKLGQYSCLRCKICFCEDHARR--KGFK--YEKNKPIPCP  214 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h~~~~~---k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~--H~~~--h~~~k~~~C~  214 (311)
                      -|.|..|. .|......+.|+++-.|.=.   +.+.=          =++=-..|....+..  -...  -..+-++.|.
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~l----------PPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~   72 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASL----------PPITAEEFNEKVLSDDSEKEENLEEAESVVYCE   72 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcC----------CCcCHHHHhHHHhhhhhhhhhhhhhcccceehH
Confidence            37788888 78888888888876421110   11110          122233342221111  1111  2445789999


Q ss_pred             CCCccccCchHHHHHHHH
Q psy2238         215 KCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       215 ~C~k~f~~~~~L~~H~~~  232 (311)
                      +|.|.|....+...|+..
T Consensus        73 ~c~k~~~s~~a~~~hl~S   90 (390)
T KOG2785|consen   73 ACNKSFASPKAHENHLKS   90 (390)
T ss_pred             HhhccccChhhHHHHHHH
Confidence            999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.95
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.87
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.85
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.84
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.84
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.78
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.77
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.76
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.75
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.74
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.73
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.72
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.7
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.7
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.68
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.67
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.64
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.63
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.63
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.6
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.6
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.59
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.59
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.57
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.57
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.56
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.56
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.55
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.54
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.52
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.52
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.51
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.51
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.5
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.48
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.47
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.46
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.45
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.44
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.44
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.42
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.42
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.41
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.41
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.41
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.4
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.39
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.39
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.38
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.36
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.35
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.33
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.32
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.31
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.29
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.29
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.27
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.27
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.25
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.25
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.22
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.22
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.18
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.18
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.18
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.17
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.15
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.15
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.14
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.11
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.11
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.11
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.07
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.07
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.06
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.06
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.06
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.06
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.06
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.06
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.05
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.05
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.03
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.03
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.03
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.03
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.02
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.02
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.01
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.0
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.0
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.99
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.98
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.98
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.97
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.97
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.96
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.94
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.92
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.92
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.91
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.88
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.88
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.87
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.87
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.86
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.85
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.85
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.84
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.83
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.83
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.83
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.8
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.8
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.8
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.8
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.79
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.79
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.78
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.78
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.78
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.77
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.75
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.74
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.74
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.7
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.69
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.68
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.66
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.61
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.61
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.59
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.59
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.55
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.53
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.5
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.48
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.48
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.47
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.43
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.42
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.42
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.42
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.42
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.4
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.39
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.38
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.38
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.36
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.36
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.35
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.35
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.35
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.34
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.66
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.63
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.27
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.25
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.54
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.21
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.2
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.2
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.16
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.09
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.02
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.01
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.0
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.99
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.93
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.92
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.92
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.89
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.89
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.87
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.83
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.83
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.82
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.79
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.97
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.77
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.77
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.75
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.94
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.74
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.67
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.65
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.58
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.57
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.67
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.37
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.35
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.06
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.48
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.27
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.94
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.88
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.49
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.68
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.23
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.44
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	90.67
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	90.27
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	87.22
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	86.36
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	85.14
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	84.57
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	82.94
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	81.26
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	80.71

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=5.7e-34  Score=239.21  Aligned_cols=172  Identities=22%  Similarity=0.387  Sum_probs=124.7

Q ss_pred             cccccccCCCCccccCcCccccccccchhhc----ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCC
Q psy2238          28 KMSVAEFPCNANMECDKCKRKQKNRAFCYFC----QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDF  103 (311)
Q Consensus        28 ~~~~~~~~~~~~~~C~~C~~~f~~~~~c~~~----h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~  103 (311)
                      ..++.+++++++|.|+.|++.|.+... +..    |.++++|.|++|++.   |.+...|..|+++|+   ++++|.|++
T Consensus        10 ~~h~~~~~~~~~~~C~~C~~~f~~~~~-l~~H~~~h~~~~~~~C~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~   82 (190)
T 2i13_A           10 VAQAALEPGEKPYACPECGKSFSRSDH-LAEHQRTHTGEKPYKCPECGKS---FSDKKDLTRHQRTHT---GEKPYKCPE   82 (190)
T ss_dssp             ---------------------CCSSHH-HHHGGGCC---CCEECTTTCCE---ESSHHHHHHHHHHHH---CCCCEECTT
T ss_pred             hhhhhhcCCCCCCcCCCCccccCCHHH-HHHHHHHcCCCCCccCCCcCch---hCCHHHHHHHHHhcC---CCCCccCcc
Confidence            345677888999999999999985554 433    677889999999999   899999999999999   778999999


Q ss_pred             Ch-hhHH--hHHHHHHhhcCcCCCCcccccccccccccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCC
Q psy2238         104 CE-AWIC--HGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCN  179 (311)
Q Consensus       104 C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~  179 (311)
                      |+ .|..  .+..|+++|.++                    ++|.|++|+ .|.....|..|+++|  +++++|.     
T Consensus        83 C~~~f~~~~~l~~H~~~h~~~--------------------~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----  135 (190)
T 2i13_A           83 CGKSFSQRANLRAHQRTHTGE--------------------KPYACPECGKSFSQLAHLRAHQRTH--TGEKPYK-----  135 (190)
T ss_dssp             TCCEESCHHHHHHHHHHHHTC--------------------CCEECTTTCCEESSHHHHHHHHHHH--HCCCCEE-----
T ss_pred             cCCccCCHHHHHHHHHhcCCC--------------------CCCcCCCCCCccCCHHHHHHHHHHh--CCCCCeE-----
Confidence            99 6654  446899988876                    457777888 788999999999999  8899999     


Q ss_pred             CCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCC
Q psy2238         180 KLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQ  239 (311)
Q Consensus       180 ~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  239 (311)
                            |++|++.| ....|..|+++|++++||.|++|++.|.+...|..|+++|++++||
T Consensus       136 ------C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          136 ------CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             ------CTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             ------CCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence                  99999999 5559999999999999999999999999999999999999999875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.95  E-value=3.6e-28  Score=203.74  Aligned_cols=145  Identities=23%  Similarity=0.409  Sum_probs=115.5

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHH--hHHHHHHhhcCcCCCCcccccccccc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWIC--HGRKCLQTHACTCPLQDAVCLECERG  135 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~  135 (311)
                      |.++++|.|++|++.   |.+...|..|+++|+   ++++|+|++|+ .|..  .+..|+++|.++              
T Consensus        16 ~~~~~~~~C~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------   75 (190)
T 2i13_A           16 EPGEKPYACPECGKS---FSRSDHLAEHQRTHT---GEKPYKCPECGKSFSDKKDLTRHQRTHTGE--------------   75 (190)
T ss_dssp             ------------------CCSSHHHHHGGGCC------CCEECTTTCCEESSHHHHHHHHHHHHCC--------------
T ss_pred             cCCCCCCcCCCCccc---cCCHHHHHHHHHHcC---CCCCccCCCcCchhCCHHHHHHHHHhcCCC--------------
Confidence            778899999999999   999999999999999   77999999999 6664  446999999877              


Q ss_pred             cccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccC
Q psy2238         136 VWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPC  213 (311)
Q Consensus       136 f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C  213 (311)
                            ++|.|++|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|+++|++++||.|
T Consensus        76 ------~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  136 (190)
T 2i13_A           76 ------KPYKCPECGKSFSQRANLRAHQRTH--TGEKPYA-----------CPECGKSFSQLAHLRAHQRTHTGEKPYKC  136 (190)
T ss_dssp             ------CCEECTTTCCEESCHHHHHHHHHHH--HTCCCEE-----------CTTTCCEESSHHHHHHHHHHHHCCCCEEC
T ss_pred             ------CCccCcccCCccCCHHHHHHHHHhc--CCCCCCc-----------CCCCCCccCCHHHHHHHHHHhCCCCCeEC
Confidence                  457777888 788999999999999  8889998           99999999 55599999999999999999


Q ss_pred             CCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         214 PKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       214 ~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      ++|++.|.+...|..|+++|++++||.+.
T Consensus       137 ~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  165 (190)
T 2i13_A          137 PECGKSFSREDNLHTHQRTHTGEKPYKCP  165 (190)
T ss_dssp             TTTCCEESCHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCCcccCCHHHHHHHHHhcCCCCCeECC
Confidence            99999999999999999999999999986

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.94  E-value=2.3e-27  Score=198.87  Aligned_cols=160  Identities=19%  Similarity=0.288  Sum_probs=123.2

Q ss_pred             CCCCcccc--CcCccccccccchhhc----ccCCCCccc--cccccccccCCCHHHHHHhHhhhccCCCcCcccCC--CC
Q psy2238          35 PCNANMEC--DKCKRKQKNRAFCYFC----QSVQRLPQC--GHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICD--FC  104 (311)
Q Consensus        35 ~~~~~~~C--~~C~~~f~~~~~c~~~----h~~~k~~~C--~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~--~C  104 (311)
                      ...++|.|  +.|++.|.+... +..    |+++++|.|  ++|++.   |.+...|..|+++|+   ++++|.|+  .|
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~-L~~H~~~h~~~~~~~C~~~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~~~C   80 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWK-LQAHLCKHTGEKPFPCKEEGCEKG---FTSLHHLTRHSLTHT---GEKNFTCDSDGC   80 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHH-HHHHHHHHHCCCSSCCSSTTCCCC---CSSHHHHHHHHTTTT---TCCCEECCSSSC
T ss_pred             CCCcceeCCCCCCcchhCCHHH-HHHHHHhcCCCCCccCCCCCCChh---hCCHHHHHHHHHHcc---CCCceeCCCCCC
Confidence            44677777  578887774443 333    667777888  778877   777778888887777   66778887  77


Q ss_pred             h-hhHHh--HHHHH-HhhcCcCCCCcccccccccccccCCCceeec--CCCC-CCCChHHHHHHHHHhcccCCCCccCCC
Q psy2238         105 E-AWICH--GRKCL-QTHACTCPLQDAVCLECERGVWDHGGRVYKC--CFCE-GFLCEDDQFEHQASCQVLESENYKCKS  177 (311)
Q Consensus       105 ~-~f~~~--~~~H~-~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C--~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~  177 (311)
                      + .|...  +..|+ +.|..                   ++++|.|  ++|+ .|...+.|..|+++|  ++++||.   
T Consensus        81 ~~~f~~~~~l~~H~~~~h~~-------------------~~~~~~C~~~~C~k~f~~~~~L~~H~~~H--~~~~~~~---  136 (190)
T 1tf6_A           81 DLRFTTKANMKKHFNRFHNI-------------------KICVYVCHFENCGKAFKKHNQLKVHQFSH--TQQLPYE---  136 (190)
T ss_dssp             CCEESCHHHHHHHHHTTSST-------------------TTSCCEECSSSSCEECSSHHHHHHHHGGG--SSSCSSB---
T ss_pred             CCccCCHHHHHHHHHHhcCC-------------------CcceeeCCCCCCccccCCHHHHHHHHHHh--CCCCCcc---
Confidence            7 55533  35776 34421                   2357888  7899 899999999999998  9999999   


Q ss_pred             CCCCCCcccCC--Cchhc-chHHHHHHhhhhcCCCCccCCC---CCccccCchHHHHHHHHhcCC
Q psy2238         178 CNKLGQYSCLR--CKICF-CEDHARRKGFKYEKNKPIPCPK---CGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       178 C~~~~~~~C~~--C~k~F-~~~~l~~H~~~h~~~k~~~C~~---C~k~f~~~~~L~~H~~~H~~~  236 (311)
                              |++  |+++| ....|..|+++|++   |.|+.   |++.|.+...|..|+++|+++
T Consensus       137 --------C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          137 --------CPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             --------CCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             --------CCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence                    877  99999 55599999999998   99999   999999999999999999864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=1.9e-24  Score=174.88  Aligned_cols=135  Identities=14%  Similarity=0.291  Sum_probs=115.8

Q ss_pred             CCCccccccccccccCCCHHHHHHhHh---hhccCCCcCcccCCCC-----h-hhHH--hHHHHHHhhcCcCCCCccccc
Q psy2238          62 QRLPQCGHCGKIKCMLKTGDCVIKHAG---VFSTGMGMVGAICDFC-----E-AWIC--HGRKCLQTHACTCPLQDAVCL  130 (311)
Q Consensus        62 ~k~~~C~~C~k~~~~f~~~~~L~~H~~---~h~~~~~~~~~~C~~C-----~-~f~~--~~~~H~~~H~~~~~~~~~~C~  130 (311)
                      +.+|.|++|++.   |.+...|..|++   +|.   ++++|.|++|     + .|..  .+..|+++|.++         
T Consensus         1 E~~~~C~~C~~~---f~~~~~L~~H~~~~h~h~---~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~---------   65 (155)
T 2gli_A            1 ETDCRWDGCSQE---FDSQEQLVHHINSEHIHG---ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE---------   65 (155)
T ss_dssp             CCBCCBTTCCCB---CSCHHHHHHHHHHHTSSS---CSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC---------
T ss_pred             CCcCCcCCCccc---cCCHHHHHHHHHhhccCC---CCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCC---------
Confidence            457999999999   999999999998   566   7789998753     3 3543  446999999877         


Q ss_pred             ccccccccCCCceeecCC--CC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCC--Cchhc-chHHHHHHh-h
Q psy2238         131 ECERGVWDHGGRVYKCCF--CE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLR--CKICF-CEDHARRKG-F  203 (311)
Q Consensus       131 ~C~~~f~~~~~~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~--C~k~F-~~~~l~~H~-~  203 (311)
                                 ++|.|++  |+ .|.....|..|+++|  +++++|.           |++  |++.| ....|..|+ +
T Consensus        66 -----------~~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~~~C~~~f~~~~~L~~H~~~  121 (155)
T 2gli_A           66 -----------KPHKCTFEGCRKSYSRLENLKTHLRSH--TGEKPYM-----------CEHEGCSKAFSNASDRAKHQNR  121 (155)
T ss_dssp             -----------CCCCCCSTTCCCCCSSHHHHHHHHHHT--TTCCCEE-----------CCSTTCCCEESSSSTTHHHHHH
T ss_pred             -----------CCccCCCCCCCCcccCHHHHHHHHHHc--CCCCCee-----------CCCCCCCCccCCHHHHHHHHHH
Confidence                       3466664  88 899999999999998  8899999           887  99999 555999998 7


Q ss_pred             hhcCCCCccCCC--CCccccCchHHHHHHHHhcC
Q psy2238         204 KYEKNKPIPCPK--CGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       204 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~  235 (311)
                      +|++++||.|++  |++.|.+...|..|+++|++
T Consensus       122 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             hcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            899999999988  99999999999999999875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.89  E-value=1.1e-23  Score=176.34  Aligned_cols=142  Identities=14%  Similarity=0.246  Sum_probs=113.0

Q ss_pred             cccccccCCCCcccc--CcCccccccccchhhc----ccCCCCcccc--ccccccccCCCHHHHHHhH-hhhccCCCcCc
Q psy2238          28 KMSVAEFPCNANMEC--DKCKRKQKNRAFCYFC----QSVQRLPQCG--HCGKIKCMLKTGDCVIKHA-GVFSTGMGMVG   98 (311)
Q Consensus        28 ~~~~~~~~~~~~~~C--~~C~~~f~~~~~c~~~----h~~~k~~~C~--~C~k~~~~f~~~~~L~~H~-~~h~~~~~~~~   98 (311)
                      ..|+++|.++++|.|  +.|++.|.+... +..    |.++++|.|.  .|++.   |.+...|..|+ +.|..  ++++
T Consensus        31 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~-l~~H~~~h~~~~~~~C~~~~C~~~---f~~~~~l~~H~~~~h~~--~~~~  104 (190)
T 1tf6_A           31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHH-LTRHSLTHTGEKNFTCDSDGCDLR---FTTKANMKKHFNRFHNI--KICV  104 (190)
T ss_dssp             HHHHHHHHCCCSSCCSSTTCCCCCSSHHH-HHHHHTTTTTCCCEECCSSSCCCE---ESCHHHHHHHHHTTSST--TTSC
T ss_pred             HHHHHhcCCCCCccCCCCCCChhhCCHHH-HHHHHHHccCCCceeCCCCCCCCc---cCCHHHHHHHHHHhcCC--Ccce
Confidence            345677889999999  889999996554 433    7888999999  89999   99999999999 56621  5579


Q ss_pred             ccC--CCCh-hhHH--hHHHHHHhhcCcCCCCcccccccccccccCCCceeecCC--CC-CCCChHHHHHHHHHhcccCC
Q psy2238          99 AIC--DFCE-AWIC--HGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCF--CE-GFLCEDDQFEHQASCQVLES  170 (311)
Q Consensus        99 ~~C--~~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~  170 (311)
                      |.|  +.|+ .|..  .+..|+++|+++                    +||.|++  |+ .|...+.|..|+++|  ++ 
T Consensus       105 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~--------------------~~~~C~~~~C~k~F~~~~~L~~H~~~H--~~-  161 (190)
T 1tf6_A          105 YVCHFENCGKAFKKHNQLKVHQFSHTQQ--------------------LPYECPHEGCDKRFSLPSRLKRHEKVH--AG-  161 (190)
T ss_dssp             CEECSSSSCEECSSHHHHHHHHGGGSSS--------------------CSSBCCSSSCCCBCSSHHHHHHHHTSS--CS-
T ss_pred             eeCCCCCCccccCCHHHHHHHHHHhCCC--------------------CCccCCCCCCCchhcCHHHHHHHHHHh--CC-
Confidence            999  8999 6664  446999999887                    4567766  88 789999999999998  66 


Q ss_pred             CCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCC
Q psy2238         171 ENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKN  208 (311)
Q Consensus       171 k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~  208 (311)
                        |.|+.        |..|++.| ....|..|+++|+++
T Consensus       162 --~~C~~--------~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          162 --YPCKK--------DDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             --CCCCS--------TTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             --CcCCC--------CCcCCCccccHHHHHHHHHhhcCC
Confidence              88333        33399999 555999999999874

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.87  E-value=4.6e-22  Score=160.90  Aligned_cols=128  Identities=15%  Similarity=0.218  Sum_probs=108.1

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhh-hccCCCcCcccCCCChhhHHhHHHHHHhhcCcCCCCcccccccccccc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGV-FSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVW  137 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~-h~~~~~~~~~~C~~C~~f~~~~~~H~~~H~~~~~~~~~~C~~C~~~f~  137 (311)
                      +..+.+|.|.+|++.   |.+...|..|++. |.   ++.+..                         .+.|        
T Consensus        20 ~~~~~~~~C~~C~~~---f~~~~~L~~H~~~~H~---~~~~~~-------------------------~~~~--------   60 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRT---FSTMHELVTHVTMEHV---GGPEQN-------------------------NHVC--------   60 (155)
T ss_dssp             CTTCCSSSCCCCCCC---BSSHHHHHHHHHTTTS---CCTTCS-------------------------SCCC--------
T ss_pred             chhhcccccccCCcc---cCCHHHHHHHHHhhcC---CCcccC-------------------------Cccc--------
Confidence            456788999999999   8999999999987 54   222211                         1111        


Q ss_pred             cCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCC--Cchhc-chHHHHHHhhhhcCCCCccC
Q psy2238         138 DHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLR--CKICF-CEDHARRKGFKYEKNKPIPC  213 (311)
Q Consensus       138 ~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~--C~k~F-~~~~l~~H~~~h~~~k~~~C  213 (311)
                          .+|.|++|+ .|.....|..|+++|  +++++|.           |.+  |++.| ....|..|+++|++++||.|
T Consensus        61 ----~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C  123 (155)
T 2rpc_A           61 ----YWEECPREGKSFKAKYKLVNHIRVH--TGEKPFP-----------CPFPGCGKIFARSENLKIHKRTHTGEKPFKC  123 (155)
T ss_dssp             ----CBTTCTTSSCCCSSHHHHHHHTHHH--HCCCSEE-----------CSCTTTCCEESCHHHHHHHHTTTCSSCSBCC
T ss_pred             ----cccCCCCcccccCCHHHHHHHHHhc--CCCCccc-----------CCcCCCCCccCCHHHHHHHHHhhCCCCCccC
Confidence                357888999 899999999999998  8899999           877  99999 55599999999999999999


Q ss_pred             CC--CCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         214 PK--CGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       214 ~~--C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      ++  |++.|.+...|.+|+++|++++||.+.
T Consensus       124 ~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          124 EFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             SSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            97  999999999999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=1.1e-21  Score=152.25  Aligned_cols=83  Identities=20%  Similarity=0.352  Sum_probs=68.1

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHhc-ccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCcc
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASCQ-VLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFE  219 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h~-~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~  219 (311)
                      +|.|++|+ .|.....|..|++.|+ +.++++|.           |++|++.| ....|..|+++|++++||.|++|++.
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  103 (124)
T 2dlq_A           35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT-----------CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQ  103 (124)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEE-----------CSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCE
T ss_pred             CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeE-----------CCCCCCccCCHHHHHHHHHHcCCCCCccCCCccch
Confidence            45566667 6778888999988641 25677787           99999999 55599999999999999999999999


Q ss_pred             ccCchHHHHHHH-HhcCC
Q psy2238         220 TSQTKDLSMSTR-SHKFG  236 (311)
Q Consensus       220 f~~~~~L~~H~~-~H~~~  236 (311)
                      |.+...|.+|++ +|.++
T Consensus       104 f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A          104 FMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             ESSHHHHHHHHHHTSSCS
T ss_pred             hCCHHHHHHHHHHHCCCC
Confidence            999999999997 46554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.85  E-value=1.3e-21  Score=150.86  Aligned_cols=78  Identities=26%  Similarity=0.506  Sum_probs=68.2

Q ss_pred             eeecC--CCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccC--CCC
Q psy2238         143 VYKCC--FCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPC--PKC  216 (311)
Q Consensus       143 ~~~C~--~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C--~~C  216 (311)
                      +|.|+  .|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|+++|++++||.|  +.|
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C  102 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQRRH--TGVKPFQ-----------CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSC  102 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH--HCCCCEE-----------CTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTC
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHc--CCCCCcc-----------CCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCC
Confidence            34455  577 677888999999998  8888888           99999999 55599999999999999999  899


Q ss_pred             CccccCchHHHHHHHHh
Q psy2238         217 GFETSQTKDLSMSTRSH  233 (311)
Q Consensus       217 ~k~f~~~~~L~~H~~~H  233 (311)
                      ++.|.+...|.+|+++|
T Consensus       103 ~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A          103 QKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCEESSHHHHHHHHHTC
T ss_pred             ccccCCHHHHHHHHhcC
Confidence            99999999999999987

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=1.4e-21  Score=152.04  Aligned_cols=86  Identities=21%  Similarity=0.373  Sum_probs=70.9

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCC--Cchhc-chHHHHHHhhhhcCCCCccCC--C
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLR--CKICF-CEDHARRKGFKYEKNKPIPCP--K  215 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~--C~k~F-~~~~l~~H~~~h~~~k~~~C~--~  215 (311)
                      ++|.|++|+ .|.....|..|+++|  +++++|.           |.+  |++.| ....|..|+++|++++||.|+  .
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~   99 (124)
T 1ubd_C           33 RVHVCAECGKAFVESSKLKRHQLVH--TGEKPFQ-----------CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG   99 (124)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGGT--SCCCCEE-----------CCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHc--CCCCCee-----------CCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCC
Confidence            356677777 788889999999998  8899999           764  99999 555999999999999999996  5


Q ss_pred             CCccccCchHHHHHHHHhcCCCCCC
Q psy2238         216 CGFETSQTKDLSMSTRSHKFGRQQL  240 (311)
Q Consensus       216 C~k~f~~~~~L~~H~~~H~~~~~~~  240 (311)
                      |++.|.+...|.+|+++|+++++++
T Consensus       100 C~~~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C          100 CNKKFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             CCCCCSSTTTTHHHHHHHC------
T ss_pred             CCCccCCHHHHHHHHHHHcccccCC
Confidence            9999999999999999999988753

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=1.1e-21  Score=154.94  Aligned_cols=91  Identities=16%  Similarity=0.326  Sum_probs=84.1

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      .|+++|+|++|+ .|...+.|..|+++|  ++++||+           |++|+++| ....|..|+++|++++||.|++|
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   84 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNIH--SWEKKYP-----------CRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC   84 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHHH--HCCSCEE-----------CSSSSCEESSHHHHHHHHHHHHTCCCEEESSS
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHHc--CCCCCee-----------CCccCeecccccchhhhccccCCCccccCCCC
Confidence            477899999999 899999999999999  9999999           99999999 55599999999999999999999


Q ss_pred             CccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         217 GFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       217 ~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      ++.|.+.+.|..|+++|++++|+...
T Consensus        85 ~k~F~~~~~L~~H~~~hh~~~p~~~~  110 (133)
T 2lt7_A           85 GKSFINYQFMSSHIKSVHSQDPSGDS  110 (133)
T ss_dssp             CCEESSHHHHHHHHHHHTCCCTTSSS
T ss_pred             CCCcCCHHHHHHHhHHhcCCCCCCCC
Confidence            99999999999999999998876553

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=2.1e-21  Score=156.81  Aligned_cols=131  Identities=17%  Similarity=0.328  Sum_probs=107.4

Q ss_pred             CCccccCcCccccccccchhhc-------ccCCCCcccccc-----ccccccCCCHHHHHHhHhhhccCCCcCcccCCC-
Q psy2238          37 NANMECDKCKRKQKNRAFCYFC-------QSVQRLPQCGHC-----GKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDF-  103 (311)
Q Consensus        37 ~~~~~C~~C~~~f~~~~~c~~~-------h~~~k~~~C~~C-----~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~-  103 (311)
                      +.+|.|+.|++.|.+... +..       |.++++|.|++|     ++.   |.+...|..|+++|+   +++||.|++ 
T Consensus         1 E~~~~C~~C~~~f~~~~~-L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~---f~~~~~l~~H~~~h~---~~~~~~C~~~   73 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQ-LVHHINSEHIHGERKEFVCHWGGCSRELRP---FKAQYMLVVHMRRHT---GEKPHKCTFE   73 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHH-HHHHHHHHTSSSCSSCCCCCBTTCTTTTCC---CSSHHHHHHHTHHHH---CCCCCCCCST
T ss_pred             CCcCCcCCCccccCCHHH-HHHHHHhhccCCCCcceeCCCCCccchhhh---hhhHHHHHHHHHhcC---CCCCccCCCC
Confidence            357899999999996555 443       456789998753     488   999999999999999   789999986 


Q ss_pred             -Ch-hhHH--hHHHHHHhhcCcCCCCcccccccccccccCCCceeecCC--CC-CCCChHHHHHHH-HHhcccCCCCccC
Q psy2238         104 -CE-AWIC--HGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCF--CE-GFLCEDDQFEHQ-ASCQVLESENYKC  175 (311)
Q Consensus       104 -C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~--C~-~f~~~~~L~~H~-~~h~~~~~k~~~C  175 (311)
                       |+ .|..  .+..|+++|.++                    ++|.|++  |+ .|...+.|..|+ ++|  +++++|. 
T Consensus        74 ~C~~~f~~~~~l~~H~~~h~~~--------------------~~~~C~~~~C~~~f~~~~~L~~H~~~~H--~~~~~~~-  130 (155)
T 2gli_A           74 GCRKSYSRLENLKTHLRSHTGE--------------------KPYMCEHEGCSKAFSNASDRAKHQNRTH--SNEKPYV-  130 (155)
T ss_dssp             TCCCCCSSHHHHHHHHHHTTTC--------------------CCEECCSTTCCCEESSSSTTHHHHHHTT--CSCCCEE-
T ss_pred             CCCCcccCHHHHHHHHHHcCCC--------------------CCeeCCCCCCCCccCCHHHHHHHHHHhc--CCCCCee-
Confidence             99 6664  446999999877                    3466666  77 688888899999 787  8899999 


Q ss_pred             CCCCCCCCcccCC--Cchhc-chHHHHHHhhhhcC
Q psy2238         176 KSCNKLGQYSCLR--CKICF-CEDHARRKGFKYEK  207 (311)
Q Consensus       176 ~~C~~~~~~~C~~--C~k~F-~~~~l~~H~~~h~~  207 (311)
                                |++  |++.| ....|..|+++|+|
T Consensus       131 ----------C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          131 ----------CKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             ----------CCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             ----------CCCCCCccccCCHHHHHHHHHhhcC
Confidence                      888  99999 55599999999885

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.84  E-value=1.1e-21  Score=155.03  Aligned_cols=102  Identities=18%  Similarity=0.213  Sum_probs=61.0

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHH--hHHHHHHhhcCcCCCCcccccccccc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWIC--HGRKCLQTHACTCPLQDAVCLECERG  135 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~  135 (311)
                      |.++++|.|++|++.   |.....|..|+++|+   +++||+|++|+ .|..  .+..|+++|+++              
T Consensus        17 h~Gek~y~C~~C~k~---F~~~~~L~~H~~~H~---~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--------------   76 (133)
T 2lt7_A           17 VDGRVYYICIVCKRS---YVCLTSLRRHFNIHS---WEKKYPCRYCEKVFPLAEYRTKHEIHHTGE--------------   76 (133)
T ss_dssp             ETTEEEEEETTTCCE---ESCHHHHHHHHHHHH---CCSCEECSSSSCEESSHHHHHHHHHHHHTC--------------
T ss_pred             cCCCcCeECCCCCCC---cCCHHHHHHHHHHcC---CCCCeeCCccCeecccccchhhhccccCCC--------------
Confidence            667777777777777   777777888877777   66666666666 4443  224666666555              


Q ss_pred             cccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc
Q psy2238         136 VWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF  193 (311)
Q Consensus       136 f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F  193 (311)
                            +||.|++|+ .|...+.|..|+++|  ++++|+.|.     ++|+|.+|++.|
T Consensus        77 ------k~~~C~~C~k~F~~~~~L~~H~~~h--h~~~p~~~~-----k~~~C~~C~k~~  122 (133)
T 2lt7_A           77 ------RRYQCLACGKSFINYQFMSSHIKSV--HSQDPSGDS-----KLYRLHPCRSLQ  122 (133)
T ss_dssp             ------CCEEESSSCCEESSHHHHHHHHHHH--TCCCTTSSS-----CCEEECCCCSSC
T ss_pred             ------ccccCCCCCCCcCCHHHHHHHhHHh--cCCCCCCCC-----CCeecCCCCchh
Confidence                  234444455 455556666666665  555554432     234455555544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.81  E-value=1e-19  Score=137.52  Aligned_cols=92  Identities=23%  Similarity=0.477  Sum_probs=84.9

Q ss_pred             cCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         138 DHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       138 ~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      ...+++|.|++|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|+++|++++||.|++
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   78 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTH--TDERPYT-----------CDICHKAFRRQDHLRDHRYIHSKEKPFKCQE   78 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHH--CCSCCCB-----------CSSSCCBCSCHHHHHHHGGGSCCCCTTSCSS
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHc--CCCCCcC-----------CCCccchhCCHHHHHHHHHHhCCCCCeECCC
Confidence            3467899999999 899999999999999  8889999           99999999 5559999999999999999999


Q ss_pred             CCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         216 CGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       216 C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |++.|.+...|..|+++|++++||...
T Consensus        79 C~~~f~~~~~L~~H~~~H~~~~~~~~~  105 (106)
T 2ee8_A           79 CGKGFCQSRTLAVHKTLHMQTSSPTAA  105 (106)
T ss_dssp             SCCCCSSHHHHHHHHHHTTSCCCCCCC
T ss_pred             cCCcccCHHHHHHHHHHhCCCCCCcCC
Confidence            999999999999999999999988753

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=1.2e-19  Score=134.46  Aligned_cols=88  Identities=19%  Similarity=0.342  Sum_probs=81.1

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      .++++|.|++|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   70 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCH--TGVKPYK-----------CKTCDYAAADSSSLNKHLRIHSDERPFKCQIC   70 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGC--CCCCSEE-----------CSSSCCEESSHHHHHHHHHHSCCCCCEECSSS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhc--CCCCCEe-----------CCCCCCccCCHHHHHHHHHHhCCCCCccCCCC
Confidence            357899999999 899999999999998  8889998           99999999 55599999999999999999999


Q ss_pred             CccccCchHHHHHHHHhcCCCCC
Q psy2238         217 GFETSQTKDLSMSTRSHKFGRQQ  239 (311)
Q Consensus       217 ~k~f~~~~~L~~H~~~H~~~~~~  239 (311)
                      ++.|.+...|..|+++|+++++.
T Consensus        71 ~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           71 PYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             SCEESSHHHHHHHHTTCCSCCCC
T ss_pred             CCccCCHHHHHHHHHHhcCCCCC
Confidence            99999999999999999987654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.78  E-value=1.3e-19  Score=132.60  Aligned_cols=85  Identities=21%  Similarity=0.359  Sum_probs=76.5

Q ss_pred             CCceeecC--CCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         140 GGRVYKCC--FCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       140 ~~~~~~C~--~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +++||.|+  .|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|+++|++++||.|++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   67 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIH--TGQKPFQ-----------CRICMRNFSRSDHLTTHIRTHTGEKPFACDI   67 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHH--HCCCCEE-----------CTTTCCEESCHHHHHHHHHHHHCCCCEECTT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHh--CCCCCcc-----------CCCCCcccCCHHHHHHHHHHcCCCCCccCCC
Confidence            46899998  599 899999999999999  8889998           99999999 5559999999999999999999


Q ss_pred             CCccccCchHHHHHHHHhcCCC
Q psy2238         216 CGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       216 C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      |++.|.+...|..|+++|++++
T Consensus        68 C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           68 CGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             TCCEESSHHHHHHHHGGGGC--
T ss_pred             CCchhCCHHHHHHHHHHhcccC
Confidence            9999999999999999999865

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.77  E-value=3e-19  Score=128.16  Aligned_cols=80  Identities=24%  Similarity=0.452  Sum_probs=74.7

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccc
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFET  220 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f  220 (311)
                      ||.|++|+ .|.....|..|+++|  .++++|.           |++|++.| ....|..|+++|++++||.|++|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   67 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIH--SDTRPYP-----------CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF   67 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH--HTCCCEE-----------CSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEE
T ss_pred             CccCCCCcccccCchhHHHHHHHc--CCCCCee-----------CCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhh
Confidence            68999999 899999999999998  8889998           99999999 555999999999999999999999999


Q ss_pred             cCchHHHHHHHHhcC
Q psy2238         221 SQTKDLSMSTRSHKF  235 (311)
Q Consensus       221 ~~~~~L~~H~~~H~~  235 (311)
                      .+...|.+|+++|++
T Consensus        68 ~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           68 SQSSNLITHSRKHTG   82 (82)
T ss_dssp             SSHHHHHHHHHHHC-
T ss_pred             CChHHHHHHHHhhCC
Confidence            999999999999974

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.76  E-value=1.4e-18  Score=140.27  Aligned_cols=119  Identities=17%  Similarity=0.206  Sum_probs=84.9

Q ss_pred             ccCCCCccccCcCccccccccchhhc-----ccCCCC--------ccccccccccccCCCHHHHHHhHhhhccCCCcCcc
Q psy2238          33 EFPCNANMECDKCKRKQKNRAFCYFC-----QSVQRL--------PQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGA   99 (311)
Q Consensus        33 ~~~~~~~~~C~~C~~~f~~~~~c~~~-----h~~~k~--------~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~   99 (311)
                      ++....+|.|..|++.|.+... +..     |....+        |.|.+|++.   |.....|..|+++|+   ++++|
T Consensus        19 ~~~~~~~~~C~~C~~~f~~~~~-L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~---f~~~~~l~~H~~~h~---~~~~~   91 (155)
T 2rpc_A           19 IDEAQLSRPKKSCDRTFSTMHE-LVTHVTMEHVGGPEQNNHVCYWEECPREGKS---FKAKYKLVNHIRVHT---GEKPF   91 (155)
T ss_dssp             CCTTCCSSSCCCCCCCBSSHHH-HHHHHHTTTSCCTTCSSCCCCBTTCTTSSCC---CSSHHHHHHHTHHHH---CCCSE
T ss_pred             echhhcccccccCCcccCCHHH-HHHHHHhhcCCCcccCCccccccCCCCcccc---cCCHHHHHHHHHhcC---CCCcc
Confidence            4556788999999999996555 444     444443        789999999   899999999998888   54454


Q ss_pred             cCCCChhhHHhHHHHHHhhcCcCCCCcccccccccccccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCC
Q psy2238         100 ICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSC  178 (311)
Q Consensus       100 ~C~~C~~f~~~~~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C  178 (311)
                      .|++                                           +.|+ .|.....|..|+++|  +++++|.    
T Consensus        92 ~C~~-------------------------------------------~~C~~~f~~~~~L~~H~~~h--~~~~~~~----  122 (155)
T 2rpc_A           92 PCPF-------------------------------------------PGCGKIFARSENLKIHKRTH--TGEKPFK----  122 (155)
T ss_dssp             ECSC-------------------------------------------TTTCCEESCHHHHHHHHTTT--CSSCSBC----
T ss_pred             cCCc-------------------------------------------CCCCCccCCHHHHHHHHHhh--CCCCCcc----
Confidence            4433                                           0155 456666777777776  6777777    


Q ss_pred             CCCCCcccCC--Cchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         179 NKLGQYSCLR--CKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       179 ~~~~~~~C~~--C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                             |.+  |++.| ....|..|+++|++++||+|+
T Consensus       123 -------C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          123 -------CEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             -------CSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             -------CCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence                   665  77777 444777777777777777775

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.7e-18  Score=131.12  Aligned_cols=88  Identities=16%  Similarity=0.291  Sum_probs=79.4

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      .++++|+|++|+ .|.....|..|+++|    +++|.           |++|++.| ....|..|++ |++++||+|++|
T Consensus        12 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H----~~~~~-----------C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C   75 (107)
T 1wjp_A           12 ENKEVYQCRLCNAKLSSLLEQGSHERLC----RNAAV-----------CPYCSLRFFSPELKQEHES-KCEYKKLTCLEC   75 (107)
T ss_dssp             CCCCCCBCTTTCCBCSSHHHHHHHHHHH----HHSBC-----------CTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGG
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHC----CCCcc-----------CCCCCCccCCHHHHHHHHH-cCCCCCccCccc
Confidence            366889999999 899999999999998    46888           99999999 4558889985 999999999999


Q ss_pred             CccccCchHHHHHHH-HhcCCCCCCCC
Q psy2238         217 GFETSQTKDLSMSTR-SHKFGRQQLNG  242 (311)
Q Consensus       217 ~k~f~~~~~L~~H~~-~H~~~~~~~~~  242 (311)
                      ++.|.+...|.+|++ +|.++++|.+.
T Consensus        76 ~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           76 MRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             TEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             cchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999997 99999998875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.4e-18  Score=127.16  Aligned_cols=85  Identities=22%  Similarity=0.321  Sum_probs=77.5

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCC--CCccCC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKN--KPIPCP  214 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~--k~~~C~  214 (311)
                      .++++|.|++|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|+++|+++  +||.|+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~   69 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSH--SGEKPYS-----------CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ   69 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHS--CSSCSEE-----------CSSSCCEESCHHHHHHHHHHHCCCCCSSBCCS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhc--CCCCCCc-----------CCCCCCccCCHHHHHHHHHHhcCCCCCceECC
Confidence            367899999999 899999999999998  8889998           99999999 555999999999987  999999


Q ss_pred             CCCccccCchHHHHHHH-HhcCC
Q psy2238         215 KCGFETSQTKDLSMSTR-SHKFG  236 (311)
Q Consensus       215 ~C~k~f~~~~~L~~H~~-~H~~~  236 (311)
                      +|++.|.+...|..|++ +|.++
T Consensus        70 ~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           70 SCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CccchhCCHHHHHHHHHHhcCCC
Confidence            99999999999999996 77654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.74  E-value=2.8e-18  Score=131.97  Aligned_cols=89  Identities=21%  Similarity=0.415  Sum_probs=83.3

Q ss_pred             CCceeecCC--CC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccC--CCchhc-chHHHHHHhhhhcCCCCccC
Q psy2238         140 GGRVYKCCF--CE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCL--RCKICF-CEDHARRKGFKYEKNKPIPC  213 (311)
Q Consensus       140 ~~~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~--~C~k~F-~~~~l~~H~~~h~~~k~~~C  213 (311)
                      ++++|.|++  |+ .|.....|..|+++|  +++++|.           |+  .|++.| ....|..|+++|++++||.|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C   69 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKH--TGEKPYQ-----------CDFKDCERRFSRSDQLKRHQRRHTGVKPFQC   69 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHH--HTTCCEE-----------CCSTTCCCEESSHHHHHHHHHHHHCCCCEEC
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhh--CCCCCcc-----------CCCCCCcCccCCHHHHHHHHHHcCCCCCccC
Confidence            578999997  99 899999999999998  8899999           76  799999 55599999999999999999


Q ss_pred             CCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         214 PKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       214 ~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      ++|++.|.+...|..|+++|+++++|.+
T Consensus        70 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (119)
T 2jp9_A           70 KTCQRKFSRSDHLKTHTRTHTGEKPFSC   97 (119)
T ss_dssp             TTTCCEESCHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCchhCCHHHHHHHHHHhcCCCCeeC
Confidence            9999999999999999999999999988

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=7.1e-18  Score=130.60  Aligned_cols=91  Identities=15%  Similarity=0.307  Sum_probs=83.7

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhh---hcCCCCccC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFK---YEKNKPIPC  213 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~---h~~~k~~~C  213 (311)
                      .++++|+|++|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|++.   +.++++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C   69 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKH--TGEKPFE-----------CPKCGKCYFRKENLLEHEARNCMNRSEQVFTC   69 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHH--SSCCSCB-----------CTTTCCBCSSHHHHHHHHHHCCCCSCCCCEEC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhC--CCCCCeE-----------CCCCCchhcCHHHHHHHHhhhhcCCCCCCeEC
Confidence            367899999999 899999999999999  8889999           99999999 55599999985   577899999


Q ss_pred             CCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         214 PKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       214 ~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      ++|++.|.+...|..|+++|++++||.+.
T Consensus        70 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (124)
T 2dlq_A           70 SVCQETFRRRMELRLHMVSHTGEMPYKCS   98 (124)
T ss_dssp             SSSCCEESSHHHHHHHHHHHSSSCSEECS
T ss_pred             CCCCCccCCHHHHHHHHHHcCCCCCccCC
Confidence            99999999999999999999999999986

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=6.2e-18  Score=128.51  Aligned_cols=85  Identities=20%  Similarity=0.311  Sum_probs=78.2

Q ss_pred             cCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         138 DHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       138 ~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +.++++|.| .|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|+++|++++||.|++
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   70 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMH--LGLRPYG-----------CGVCGKKFKMKHHLVGHMKIHTGIKPYECNI   70 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHH--SCCCSEE-----------CTTTSCEESSSHHHHHHHTTTCCCCCEECSS
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHc--CCCcCcc-----------CCCCCcccCCHHHHHHHHHHcCCCCCeeCCC
Confidence            346789999 899 899999999999999  8889998           99999999 5569999999999999999999


Q ss_pred             CCccccCchHHHHHHHHhcCC
Q psy2238         216 CGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       216 C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      |++.|.+...|.+|+++|...
T Consensus        71 C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           71 CAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             SCCEESCHHHHHHHHHHHHHH
T ss_pred             CcchhcCHHHHHHHHHHcccc
Confidence            999999999999999998754

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.70  E-value=2.6e-17  Score=122.57  Aligned_cols=85  Identities=22%  Similarity=0.398  Sum_probs=76.3

Q ss_pred             CCceeecCC--CC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         140 GGRVYKCCF--CE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       140 ~~~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      ..++|.|.+  |+ .|.....|..|+++|  +++++|.|+         ...|++.| ....|..|+++|++++||.|++
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~---------~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   80 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTH--TGEKPYKCT---------WEGCDWRFARSDELTRHYRKHTGAKPFQCGV   80 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHH--SCCCCEECC---------SSSCCCEESSHHHHHHHHHHHTSCCSCBCSS
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHh--CCCCCeeCC---------CCCCCCccCCHHHHHHHHHHhCCCCCeECCC
Confidence            467899997  99 899999999999998  889999922         24799999 5559999999999999999999


Q ss_pred             CCccccCchHHHHHHHHhcC
Q psy2238         216 CGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       216 C~k~f~~~~~L~~H~~~H~~  235 (311)
                      |++.|.....|..|+++|++
T Consensus        81 C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           81 CNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             SCCBCSSHHHHHHHHHHHCC
T ss_pred             CcCccCCHHHHHHHHHHhCC
Confidence            99999999999999999974

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.70  E-value=9.7e-18  Score=130.06  Aligned_cols=111  Identities=22%  Similarity=0.380  Sum_probs=57.0

Q ss_pred             CCCcccc--ccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHH--hHHHHHHhhcCcCCCCccccccccccc
Q psy2238          62 QRLPQCG--HCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWIC--HGRKCLQTHACTCPLQDAVCLECERGV  136 (311)
Q Consensus        62 ~k~~~C~--~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~f  136 (311)
                      +++|.|+  .|++.   |.+...|..|+++|    ++++|.|++|+ .|..  .+..|+++|.++               
T Consensus         3 ~~~~~C~~~~C~~~---f~~~~~l~~H~~~h----~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------   60 (124)
T 1ubd_C            3 PRTIACPHKGCTKM---FRDNSAMRKHLHTH----GPRVHVCAECGKAFVESSKLKRHQLVHTGE---------------   60 (124)
T ss_dssp             --CEECCSTTCCCE---ESSHHHHHHHHGGG----SCCCEECTTTCCEESSHHHHHHHGGGTSCC---------------
T ss_pred             CCcccCCCCCCcCc---cCCHHHHHHHHHHc----CCCCeECCCCCchhCCHHHHHHHHHHcCCC---------------
Confidence            3456665  56666   56666666666655    22466666666 4432  224565555544               


Q ss_pred             ccCCCceeecCC--CC-CCCChHHHHHHHHHhcccCCCCccCC--CCCCCCCcccCCCchhcchHHHHHHhhhhcCCCCc
Q psy2238         137 WDHGGRVYKCCF--CE-GFLCEDDQFEHQASCQVLESENYKCK--SCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPI  211 (311)
Q Consensus       137 ~~~~~~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~k~~~C~--~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k~~  211 (311)
                           ++|.|++  |+ .|.....|..|+++|  +++++|.|+  .|++.....          ..|..|+++|++++++
T Consensus        61 -----~~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~~~C~~~f~~~----------~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           61 -----KPFQCTFEGCGKRFSLDFNLRTHVRIH--TGDRPYVCPFDGCNKKFAQS----------TNLKSHILTHAKAKNN  123 (124)
T ss_dssp             -----CCEECCSTTCCCEESCHHHHHHHHHHH--HCCCCCCCCSTTCCCCCSST----------TTTHHHHHHHC-----
T ss_pred             -----CCeeCCCCCCcCccCCHHHHHHHHHHh--CCCCceECCCCCCCCccCCH----------HHHHHHHHHHcccccC
Confidence                 2344433  55 455555666666665  555666663  355554433          4555666666655554

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.70  E-value=6.4e-18  Score=114.07  Aligned_cols=54  Identities=17%  Similarity=0.332  Sum_probs=49.5

Q ss_pred             cccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         184 YSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       184 ~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      |.|++|+++| ....|..|+++|++++||.|++|++.|.+.++|.+|+++|++++
T Consensus         5 y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             ccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            3399999999 55599999999999999999999999999999999999999864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.68  E-value=2.3e-17  Score=120.23  Aligned_cols=81  Identities=21%  Similarity=0.402  Sum_probs=74.6

Q ss_pred             CceeecCC--CC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccC--CCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         141 GRVYKCCF--CE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCL--RCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       141 ~~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~--~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      ..+|.|++  |+ .|.....|..|+++|  +++++|.           |+  .|++.| ....|..|+++|++++||.|+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   69 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTH--TGEKPYH-----------CDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ   69 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTS--CSSCCEE-----------CCSTTTCCEESSHHHHHHHHHHHHCCCCEECS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhc--CCCCCcC-----------CCCCCCCCccCCHHHHHHHHHHcCCCCCccCC
Confidence            46799999  99 899999999999998  8899999           75  699999 555999999999999999999


Q ss_pred             CCCccccCchHHHHHHHHhc
Q psy2238         215 KCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       215 ~C~k~f~~~~~L~~H~~~H~  234 (311)
                      +|++.|.....|..|+++|.
T Consensus        70 ~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           70 KCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             SSSCEESSHHHHHHHGGGGC
T ss_pred             CCCcccCCHHHHHHHHHhhC
Confidence            99999999999999999984

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=3.4e-17  Score=125.40  Aligned_cols=89  Identities=16%  Similarity=0.186  Sum_probs=74.9

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHH--hcccCCCCccCCCCCCCCCcccCCCchhc--chH-HHHHHhhhhcCCCCccC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQAS--CQVLESENYKCKSCNKLGQYSCLRCKICF--CED-HARRKGFKYEKNKPIPC  213 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~--h~~~~~k~~~C~~C~~~~~~~C~~C~k~F--~~~-~l~~H~~~h~~~k~~~C  213 (311)
                      +++||.|++|+ .|.....|..|+++  |  .+++++.          .|++|++.|  ... .|..|+++|++++||.|
T Consensus        16 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~h--~~~~~~~----------~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C   83 (115)
T 2dmi_A           16 GASKFRCKDCSAAYDTLVELTVHMNETGH--YRDDNHE----------TDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKC   83 (115)
T ss_dssp             CCCSEEBSSSSCEESSHHHHHHHHHHTCC--CBCSCCC----------CCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBC
T ss_pred             CCCCEECCccCchhcCHHHHHHHHHHhCc--cccCCCc----------cCCCCCcccccccHHHHHHHhhccCCCcceEC
Confidence            45778888899 79999999999998  5  5565542          188899888  554 89999999999999999


Q ss_pred             CCCCccccCchHHHHHHHHhcCCCCCC
Q psy2238         214 PKCGFETSQTKDLSMSTRSHKFGRQQL  240 (311)
Q Consensus       214 ~~C~k~f~~~~~L~~H~~~H~~~~~~~  240 (311)
                      ++|++.|.+...|.+|+++|+......
T Consensus        84 ~~C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           84 MYCGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             SSSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             CCCCCccCCHHHHHHHHHHhCCcccCC
Confidence            999999999999999999988665433

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=9.5e-17  Score=119.65  Aligned_cols=79  Identities=11%  Similarity=0.116  Sum_probs=71.5

Q ss_pred             CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcc-hH-HHHHHhhhhcC-CCCccCCCCCccccCchHHH
Q psy2238         151 GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFC-ED-HARRKGFKYEK-NKPIPCPKCGFETSQTKDLS  227 (311)
Q Consensus       151 ~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~-~~-~l~~H~~~h~~-~k~~~C~~C~k~f~~~~~L~  227 (311)
                      .+.....+..|+++|  .++++|.           |++|++.|. .. .|..|+++|++ ++||.|++|++.|.+...|.
T Consensus         5 s~~~~~~~~~h~~~h--~~~~~~~-----------C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~   71 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAI--HERGEAV-----------CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN   71 (98)
T ss_dssp             CCCCCCSCSHHHHTT--TTTSCCC-----------CTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHH
T ss_pred             CCCCCCcHHHHHHHh--ccCCCcC-----------CCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHH
Confidence            456666788999998  8999999           999999997 66 99999999999 99999999999999999999


Q ss_pred             HHHHHhcCCCCCCCC
Q psy2238         228 MSTRSHKFGRQQLNG  242 (311)
Q Consensus       228 ~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++|....
T Consensus        72 ~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           72 YHTMAEHSAKPSDAE   86 (98)
T ss_dssp             HHHHHHSCSCSSCCC
T ss_pred             HHHHHHcCCCCCCCC
Confidence            999999999987664

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.63  E-value=2.8e-17  Score=119.89  Aligned_cols=80  Identities=20%  Similarity=0.231  Sum_probs=73.6

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCc
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGF  218 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k  218 (311)
                      ++||.|++|+ .|...+.|..|+++|  ++++||.           |++|++.| ....|..|+++|++ .+|.|+.|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~   66 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFA-----------CDICGRKFARSDERKRHRDIQHI-LPILEDKVEE   66 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH--HCCCCEE-----------CTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHc--CCCCCcc-----------CCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHH
Confidence            4789999999 899999999999999  8999999           99999999 55599999999985 8999999999


Q ss_pred             cccCchHHHHHHHHhc
Q psy2238         219 ETSQTKDLSMSTRSHK  234 (311)
Q Consensus       219 ~f~~~~~L~~H~~~H~  234 (311)
                      .|.....|..|++.++
T Consensus        67 ~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           67 LLSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHH
Confidence            9999999999998754

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.63  E-value=6.2e-16  Score=116.44  Aligned_cols=89  Identities=19%  Similarity=0.366  Sum_probs=76.0

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHH--hHHHHHHhhcCcCCCCcccccccccc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWIC--HGRKCLQTHACTCPLQDAVCLECERG  135 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~  135 (311)
                      ...+++|.|.+|++.   |.....|..|+++|+   ++++|+|++|+ .|..  .+..|+++|.++              
T Consensus        12 ~~~~~~~~C~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------   71 (106)
T 2ee8_A           12 SKTKKEFICKFCGRH---FTKSYNLLIHERTHT---DERPYTCDICHKAFRRQDHLRDHRYIHSKE--------------   71 (106)
T ss_dssp             CCCCCCCBCSSSCCB---CSSHHHHHHHHHHHC---CSCCCBCSSSCCBCSCHHHHHHHGGGSCCC--------------
T ss_pred             cCCCcCeECCCCCCc---cCCHHHHHHHHHHcC---CCCCcCCCCccchhCCHHHHHHHHHHhCCC--------------
Confidence            446789999999999   999999999999999   77899999999 6664  446898888776              


Q ss_pred             cccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccC
Q psy2238         136 VWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKC  175 (311)
Q Consensus       136 f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C  175 (311)
                            ++|.|++|+ .|.....|..|+++|  +++++|.+
T Consensus        72 ------~~~~C~~C~~~f~~~~~L~~H~~~H--~~~~~~~~  104 (106)
T 2ee8_A           72 ------KPFKCQECGKGFCQSRTLAVHKTLH--MQTSSPTA  104 (106)
T ss_dssp             ------CTTSCSSSCCCCSSHHHHHHHHHHT--TSCCCCCC
T ss_pred             ------CCeECCCcCCcccCHHHHHHHHHHh--CCCCCCcC
Confidence                  456777788 789999999999998  88998873

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=6.9e-16  Score=116.59  Aligned_cols=88  Identities=22%  Similarity=0.352  Sum_probs=53.7

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCChhhHHhHHHHHHhhcCcCCCCccccccccccccc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWD  138 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~f~~~~~~H~~~H~~~~~~~~~~C~~C~~~f~~  138 (311)
                      |+++++|.|.+|++.   |.....|..|+++|.     ++|+                                      
T Consensus        11 h~~~~~~~C~~C~~~---f~~~~~l~~H~~~H~-----~~~~--------------------------------------   44 (107)
T 1wjp_A           11 VENKEVYQCRLCNAK---LSSLLEQGSHERLCR-----NAAV--------------------------------------   44 (107)
T ss_dssp             CCCCCCCBCTTTCCB---CSSHHHHHHHHHHHH-----HSBC--------------------------------------
T ss_pred             cCCCcCeECCCCCCc---cCCHHHHHHHHHHCC-----CCcc--------------------------------------
Confidence            566667777777777   677777777766664     2444                                      


Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhh-hhcCCCCccC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGF-KYEKNKPIPC  213 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~-~h~~~k~~~C  213 (311)
                             |++|+ .|.....|..|++ |  ++++||+           |++|++.| ....|..|++ +|++++||.|
T Consensus        45 -------C~~C~~~f~~~~~l~~H~~-H--~~~~~~~-----------C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~  101 (107)
T 1wjp_A           45 -------CPYCSLRFFSPELKQEHES-K--CEYKKLT-----------CLECMRTFKSSFSIWRHQVEVHNQNNMAPT  101 (107)
T ss_dssp             -------CTTTCCCBSSHHHHHHHHH-H--CSTGGGE-----------EGGGTEECSSHHHHHHHHHHTSCCCCCCCC
T ss_pred             -------CCCCCCccCCHHHHHHHHH-c--CCCCCcc-----------CccccchhCCHHHHHHHHHHHcCCCCCCCC
Confidence                   44445 4555556666663 5  5666666           66666666 3336666664 5666666655

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.60  E-value=7.3e-16  Score=110.96  Aligned_cols=76  Identities=22%  Similarity=0.363  Sum_probs=70.5

Q ss_pred             eeec--CCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCC--Cchhc-chHHHHHHhhhhcCCCCccCCC-
Q psy2238         143 VYKC--CFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLR--CKICF-CEDHARRKGFKYEKNKPIPCPK-  215 (311)
Q Consensus       143 ~~~C--~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~--C~k~F-~~~~l~~H~~~h~~~k~~~C~~-  215 (311)
                      ||.|  +.|+ .|...+.|..|+++|  +++++|+           |++  |++.| ....|..|+++|++   |.|+. 
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~   64 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSH--TQQLPYE-----------CPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKD   64 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH--HTTCCEE-----------CCSTTCCCEESSHHHHHHHHHHHHS---EECCSC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHh--CCCCCee-----------CCCCCCcCccCCHHHHHHHHHHhCC---CCCCCC
Confidence            6899  8899 899999999999999  8899999           888  99999 55599999999998   99999 


Q ss_pred             --CCccccCchHHHHHHHHhc
Q psy2238         216 --CGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       216 --C~k~f~~~~~L~~H~~~H~  234 (311)
                        |++.|.....|..|+++|+
T Consensus        65 ~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           65 DSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCccCCHHHHHHHHHhcC
Confidence              9999999999999999885

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.60  E-value=5.3e-16  Score=104.60  Aligned_cols=57  Identities=19%  Similarity=0.383  Sum_probs=52.0

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNK  209 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k  209 (311)
                      .|+||+|++|+ .|...+.|..|+++|  ++++||+           |++|+++| ....|.+|+++|++++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~H--t~ekp~~-----------C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAH--LGYRPRS-----------CPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHH--HTCCCEE-----------CTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHh--CCCcCeE-----------CCCCCCCcCCHHHHHHHhCccCCCC
Confidence            37899999999 899999999999999  9999999           99999999 5559999999999875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.59  E-value=2.6e-16  Score=122.97  Aligned_cols=115  Identities=10%  Similarity=0.013  Sum_probs=83.5

Q ss_pred             CcCcccCCCCh-hhHHhHHHHHHhhcCcCCCCcccccccccccccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCC
Q psy2238          95 GMVGAICDFCE-AWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESEN  172 (311)
Q Consensus        95 ~~~~~~C~~C~-~f~~~~~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~  172 (311)
                      +.++|.|...+ ........+++.+.-....+.+.|++|.+.|..           . .|.....|..|+ .|  ++++|
T Consensus         9 ~~k~~~~~~k~~~~~~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~-----------~~~~~~~~~l~~h~-~h--~~~~~   74 (129)
T 2wbt_A            9 GSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHN-----------PQLLDESSYLYRLL-AS--KAISQ   74 (129)
T ss_dssp             TCCGGGGCSSCEEEECCHHHHHHHTTSCHHHHHHHHHHHHHHHHC-----------GGGTTTHHHHHHHH-HH--HHHCS
T ss_pred             cccccccccCCeeeeecHHhhhccccCChhhCcccchhhhcccCC-----------CcccCCHHHHHHHH-Hh--CCCCC
Confidence            55777777666 332223333333321100023677777766542           2 356777888888 56  88999


Q ss_pred             ccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         173 YKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       173 ~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      |.           |++|++.| ....|..|+++|  ++||.|++|++.|.+.+.|.+|+++|++.
T Consensus        75 ~~-----------C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           75 FV-----------CPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             EE-----------CTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             eE-----------CCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99           99999999 555999999998  99999999999999999999999999875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.59  E-value=2.7e-15  Score=110.72  Aligned_cols=87  Identities=22%  Similarity=0.316  Sum_probs=73.3

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHH--hHHHHHHhhcCcCCCCcccccccccc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWIC--HGRKCLQTHACTCPLQDAVCLECERG  135 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~  135 (311)
                      +.++++|.|.+|++.   |.....|..|+++|+   ++++|.|++|+ .|..  .+..|+++|.++              
T Consensus         3 ~~~~~~~~C~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------   62 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKC---FSRKDKLKTHMRCHT---GVKPYKCKTCDYAAADSSSLNKHLRIHSDE--------------   62 (96)
T ss_dssp             CCCCCCCCBTTTTBC---CCCHHHHHHHGGGCC---CCCSEECSSSCCEESSHHHHHHHHHHSCCC--------------
T ss_pred             CCCCcCeECCCCCCc---cCCHHHHHHHHHhcC---CCCCEeCCCCCCccCCHHHHHHHHHHhCCC--------------
Confidence            346789999999999   999999999999999   77899999999 6654  446999998876              


Q ss_pred             cccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCc
Q psy2238         136 VWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENY  173 (311)
Q Consensus       136 f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~  173 (311)
                            ++|.|++|+ .|.....|..|+++|  +++++.
T Consensus        63 ------~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~p   93 (96)
T 2dmd_A           63 ------RPFKCQICPYASRNSSQLTVHLRSH--TGDSGP   93 (96)
T ss_dssp             ------CCEECSSSSCEESSHHHHHHHHTTC--CSCCCC
T ss_pred             ------CCccCCCCCCccCCHHHHHHHHHHh--cCCCCC
Confidence                  457777888 788899999999998  777543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.57  E-value=1.7e-15  Score=110.37  Aligned_cols=83  Identities=19%  Similarity=0.453  Sum_probs=68.3

Q ss_pred             CCCCcccc--ccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHH--hHHHHHHhhcCcCCCCcccccccccc
Q psy2238          61 VQRLPQCG--HCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWIC--HGRKCLQTHACTCPLQDAVCLECERG  135 (311)
Q Consensus        61 ~~k~~~C~--~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~  135 (311)
                      ++++|.|+  .|++.   |.....|..|+++|+   ++++|.|++|+ .|..  .+..|+++|.++              
T Consensus         1 ~~k~~~C~~~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------   60 (90)
T 1a1h_A            1 MERPYACPVESCDRR---FSQSGSLTRHIRIHT---GQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------   60 (90)
T ss_dssp             --CCEECCSSSCCCE---ESSHHHHHHHHHHHH---CCCCEECTTTCCEESCHHHHHHHHHHHHCC--------------
T ss_pred             CCCceECCCCCCCCc---cCCHHHHHHHHHHhC---CCCCccCCCCCcccCCHHHHHHHHHHcCCC--------------
Confidence            36899998  69999   899999999999999   77899999999 6664  446999999877              


Q ss_pred             cccCCCceeecCCCC-CCCChHHHHHHHHHhcccCCC
Q psy2238         136 VWDHGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESE  171 (311)
Q Consensus       136 f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k  171 (311)
                            ++|.|++|+ .|...+.|..|+++|  ++++
T Consensus        61 ------~~~~C~~C~~~f~~~~~l~~H~~~H--~~~k   89 (90)
T 1a1h_A           61 ------KPFACDICGRKFARSDERKRHTKIH--LRQK   89 (90)
T ss_dssp             ------CCEECTTTCCEESSHHHHHHHHGGG--GC--
T ss_pred             ------CCccCCCCCchhCCHHHHHHHHHHh--cccC
Confidence                  457777788 788999999999998  7765

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1e-16  Score=122.74  Aligned_cols=99  Identities=13%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             HHHHhHhhhccCCCcCcccCCCCh-hhHH--hHHHHHHh--hcCcCCCCcccccccccccccCCCceeecCCCC-CC--C
Q psy2238          82 CVIKHAGVFSTGMGMVGAICDFCE-AWIC--HGRKCLQT--HACTCPLQDAVCLECERGVWDHGGRVYKCCFCE-GF--L  153 (311)
Q Consensus        82 ~L~~H~~~h~~~~~~~~~~C~~C~-~f~~--~~~~H~~~--H~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~-~f--~  153 (311)
                      .|..|+++|+   +++||+|++|+ .|..  .+..|+++  |.+.+                   ..+.|++|+ .|  .
T Consensus         6 ~l~~H~~~H~---~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~-------------------~~~~C~~C~~~f~f~   63 (115)
T 2dmi_A            6 SGKLYGSIFT---GASKFRCKDCSAAYDTLVELTVHMNETGHYRDD-------------------NHETDNNNPKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCC---CCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCS-------------------CCCCCCCCCSCCSSC
T ss_pred             hhhhheeeeC---CCCCEECCccCchhcCHHHHHHHHHHhCccccC-------------------CCccCCCCCcccccc
Confidence            4666777777   66777777777 5543  33466666  43332                   123366666 55  6


Q ss_pred             ChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         154 CEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       154 ~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      ....|..|+++|  ++++||.           |++|++.| ....|..|+++|+......++.
T Consensus        64 ~~~~l~~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~  113 (115)
T 2dmi_A           64 RKRSLLEMEGKE--DAQKVLK-----------CMYCGHSFESLQDLSVHMIKTKHYQKVSGPS  113 (115)
T ss_dssp             CCCCCCCCCCSC--CCCSSCB-----------CSSSCCBCSSHHHHHHHHHHTTTTTCSCCCC
T ss_pred             cHHHHHHHhhcc--CCCcceE-----------CCCCCCccCCHHHHHHHHHHhCCcccCCCCC
Confidence            677788888887  7888888           88888888 4458888888887766555543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=2.8e-15  Score=106.59  Aligned_cols=70  Identities=17%  Similarity=0.353  Sum_probs=61.1

Q ss_pred             CCCceeecCC--CC-CCCChHHHHHHHH-HhcccCCCCccCCCCCCCCCcccCC--Cchhc-chHHHHHHhhhhcCCCCc
Q psy2238         139 HGGRVYKCCF--CE-GFLCEDDQFEHQA-SCQVLESENYKCKSCNKLGQYSCLR--CKICF-CEDHARRKGFKYEKNKPI  211 (311)
Q Consensus       139 ~~~~~~~C~~--C~-~f~~~~~L~~H~~-~h~~~~~k~~~C~~C~~~~~~~C~~--C~k~F-~~~~l~~H~~~h~~~k~~  211 (311)
                      +++++|.|..  |+ .|.....|..|++ +|  +++++|.           |++  |++.| ....|..|+++|++++||
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H--~~~~~~~-----------C~~~~C~k~f~~~~~L~~H~~~H~~~~~~   69 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH--IHQKSFS-----------CPEPACGKSFNFKKHLKEHMKLHSDTRDY   69 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGG--GSCCCEE-----------CSCTTTCCEESSHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHh--CCCCCeE-----------CCCCCCcCccCCHHHHHHHHHHhCCCCCe
Confidence            3567888887  99 8999999999999 67  8889998           887  99999 555999999999999999


Q ss_pred             cCCCCCcccc
Q psy2238         212 PCPKCGFETS  221 (311)
Q Consensus       212 ~C~~C~k~f~  221 (311)
                      .|++|++.|.
T Consensus        70 ~C~~C~k~F~   79 (79)
T 2dlk_A           70 ICEFSGPSSG   79 (79)
T ss_dssp             SCCSSSCCCC
T ss_pred             eCCCCCCCCC
Confidence            9999999984

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=5.8e-15  Score=109.54  Aligned_cols=75  Identities=9%  Similarity=0.133  Sum_probs=67.5

Q ss_pred             CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chH-HHHHHhhhhcCCCCccCCCCCccccCchHHHH
Q psy2238         151 GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CED-HARRKGFKYEKNKPIPCPKCGFETSQTKDLSM  228 (311)
Q Consensus       151 ~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~-~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~  228 (311)
                      .|.....|..|+++|  +++++|.           |++|++.| ... .|..|+++| +++||.|.+|++.|.....|..
T Consensus        15 ~~~~~~~~~~~~~~~--~~~~~~~-----------C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~   80 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEI--VDKGSVS-----------CPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKY   80 (96)
T ss_dssp             SSCTTCHHHHHHHHH--HHTSCEE-----------CTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHH
T ss_pred             CCCCchHHHHHHHHh--cCCCCcC-----------CCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHH
Confidence            577888899999998  8899999           99999999 666 999999999 9999999999999999999999


Q ss_pred             H-HHHhcCCCCC
Q psy2238         229 S-TRSHKFGRQQ  239 (311)
Q Consensus       229 H-~~~H~~~~~~  239 (311)
                      | +++|+++..+
T Consensus        81 H~~~~H~~~p~~   92 (96)
T 2ctd_A           81 HVMANHNSLPSG   92 (96)
T ss_dssp             HHHHHTCCCSSC
T ss_pred             HhHHhcCCCCCC
Confidence            9 9999865433

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.55  E-value=3.3e-15  Score=106.76  Aligned_cols=76  Identities=21%  Similarity=0.371  Sum_probs=66.4

Q ss_pred             CccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHH--hHHHHHHhhcCcCCCCcccccccccccccCC
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWIC--HGRKCLQTHACTCPLQDAVCLECERGVWDHG  140 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~f~~~~  140 (311)
                      ||.|.+|++.   |.....|..|+++|+   ++++|.|+.|+ .|..  .+..|+++|.++                   
T Consensus         1 ~~~C~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------------   55 (82)
T 2kmk_A            1 SFDCKICGKS---FKRSSTLSTHLLIHS---DTRPYPCQYCGKRFHQKSDMKKHTFIHTGE-------------------   55 (82)
T ss_dssp             CEECSSSCCE---ESSHHHHHHHHHHHH---TCCCEECSSSCCEESSHHHHHHHHHHHHTC-------------------
T ss_pred             CccCCCCccc---ccCchhHHHHHHHcC---CCCCeeCCcCChhhCCHHHHHHHHHHhcCC-------------------
Confidence            6899999999   899999999999999   77999999999 6654  446999999877                   


Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                       ++|.|++|+ .|...+.|..|+++|
T Consensus        56 -~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           56 -KPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             -CCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             -CCCcCCCcchhhCChHHHHHHHHhh
Confidence             457777788 788999999999998

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.54  E-value=8.1e-15  Score=103.03  Aligned_cols=61  Identities=25%  Similarity=0.447  Sum_probs=56.2

Q ss_pred             cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCC
Q psy2238         168 LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQ  239 (311)
Q Consensus       168 ~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  239 (311)
                      .++++|+           |.+|++.| ....|..|+++|++++||+|++|++.|.+...|.+|+++|++++||
T Consensus        13 ~~~~~~~-----------C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYK-----------CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBC-----------CTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeE-----------CCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            5667777           99999999 5559999999999999999999999999999999999999999886

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=9e-15  Score=103.61  Aligned_cols=63  Identities=24%  Similarity=0.356  Sum_probs=57.6

Q ss_pred             cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         168 LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       168 ~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      .++++|.           |++|++.| ....|..|+++|++++||.|++|++.|.....|.+|+++|++++||.+
T Consensus        14 ~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYK-----------CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSB-----------CSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEE-----------CCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            5567777           99999999 555999999999999999999999999999999999999999999875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=9e-15  Score=110.84  Aligned_cols=80  Identities=24%  Similarity=0.499  Sum_probs=70.0

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHHh--HHHHHHhhcCcCCCCcccccccccc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWICH--GRKCLQTHACTCPLQDAVCLECERG  135 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~~--~~~H~~~H~~~~~~~~~~C~~C~~~  135 (311)
                      |+++++|.| +|++.   |.....|..|++.|+   ++++|+|++|+ .|...  +..|+++|.++              
T Consensus         5 h~~~k~~~C-~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------   63 (110)
T 2csh_A            5 SSGDKLYPC-QCGKS---FTHKSQRDRHMSMHL---GLRPYGCGVCGKKFKMKHHLVGHMKIHTGI--------------   63 (110)
T ss_dssp             CCCCCCEEC-TTSCE---ESSHHHHHHHHHHHS---CCCSEECTTTSCEESSSHHHHHHHTTTCCC--------------
T ss_pred             CCCCCCEec-cCCCc---cCCHHHHHHHHHHcC---CCcCccCCCCCcccCCHHHHHHHHHHcCCC--------------
Confidence            788999999 99999   899999999999999   77899999999 77644  46999888776              


Q ss_pred             cccCCCceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         136 VWDHGGRVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       136 f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                            ++|.|++|+ .|.....|..|+++|
T Consensus        64 ------~~~~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           64 ------KPYECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             ------CCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             ------CCeeCCCCcchhcCHHHHHHHHHHc
Confidence                  457778888 788999999999998

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.51  E-value=2.6e-14  Score=105.21  Aligned_cols=82  Identities=24%  Similarity=0.362  Sum_probs=69.9

Q ss_pred             cCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh-hhHH--hHHHHHHhhcCcCCCCccccccccccc
Q psy2238          60 SVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE-AWIC--HGRKCLQTHACTCPLQDAVCLECERGV  136 (311)
Q Consensus        60 ~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~~f  136 (311)
                      +++++|.|.+|++.   |.....|..|+++|+   ++++|+|++|+ .|..  .+..|+++|.++.              
T Consensus         3 ~~~~~~~C~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--------------   62 (95)
T 2yt9_A            3 SGSSGVACEICGKI---FRDVYHLNRHKLSHS---GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV--------------   62 (95)
T ss_dssp             CCCSCEECSSSCCE---ESSSHHHHHHHHHSC---SSCSEECSSSCCEESCHHHHHHHHHHHCCCC--------------
T ss_pred             CCCCCeECCCCCCc---cCChHHHHHHHHhcC---CCCCCcCCCCCCccCCHHHHHHHHHHhcCCC--------------
Confidence            46789999999999   899999999999999   77899999999 6654  4469999998762              


Q ss_pred             ccCCCceeecCCCC-CCCChHHHHHHHH-Hh
Q psy2238         137 WDHGGRVYKCCFCE-GFLCEDDQFEHQA-SC  165 (311)
Q Consensus       137 ~~~~~~~~~C~~C~-~f~~~~~L~~H~~-~h  165 (311)
                          .++|.|++|+ .|.....|..|++ +|
T Consensus        63 ----~~~~~C~~C~~~f~~~~~L~~H~~~~H   89 (95)
T 2yt9_A           63 ----GKPYICQSCGKGFSRPDHLNGHIKQVH   89 (95)
T ss_dssp             ----CSSBCCSSSCCCBSSHHHHHHHHHHTS
T ss_pred             ----CCceECCCccchhCCHHHHHHHHHHhc
Confidence                2578888899 8999999999986 66

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=6.6e-15  Score=106.28  Aligned_cols=72  Identities=13%  Similarity=0.196  Sum_probs=65.1

Q ss_pred             HHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCC----CCccCCCCCccccCchHHHHHHHH
Q psy2238         158 QFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKN----KPIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       158 L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~----k~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      |.+|+++|  ++++||.           |.+|++.| ....|..|+++|+.+    ++|.|++|++.|.....|..|+++
T Consensus         3 ~~~H~~~H--~~~k~~~-----------C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~   69 (86)
T 1x6h_A            3 SGSSGRTH--TGEKPYA-----------CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN   69 (86)
T ss_dssp             TTCCSTTC--CCCCCEE-----------CSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             ccccccee--cCCCCCc-----------CCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHH
Confidence            56789998  8899999           99999999 555999999888765    799999999999999999999999


Q ss_pred             hcCCCCCCCC
Q psy2238         233 HKFGRQQLNG  242 (311)
Q Consensus       233 H~~~~~~~~~  242 (311)
                      |++++++.+.
T Consensus        70 h~~~~~~~~~   79 (86)
T 1x6h_A           70 CAGPDGVEGE   79 (86)
T ss_dssp             CCCCCSCCCC
T ss_pred             ccCCCCcccC
Confidence            9999998875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.9e-14  Score=99.94  Aligned_cols=63  Identities=19%  Similarity=0.309  Sum_probs=57.4

Q ss_pred             cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         168 LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       168 ~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      +++++|+           |++|++.| ....|..|+++|++++||.|++|++.|.+...|.+|+++|++++|...
T Consensus         5 ~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p~   68 (70)
T 1x5w_A            5 SSGHPEK-----------CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS   68 (70)
T ss_dssp             CCCCSEE-----------CSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCSS
T ss_pred             CCCCCeE-----------CCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCCC
Confidence            6677877           99999999 555999999999999999999999999999999999999999887654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=7.7e-15  Score=102.61  Aligned_cols=63  Identities=24%  Similarity=0.361  Sum_probs=56.8

Q ss_pred             HHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCC
Q psy2238         163 ASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       163 ~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      ++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|++.|.+...|.+|+++|+++.+
T Consensus         7 ~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            7 GIH--SGEKPYG-----------CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CTT--TTCCCEE-----------CSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             ccc--CCCCCcc-----------CCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            456  7888888           99999999 555999999999999999999999999999999999999997643

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=3.1e-14  Score=100.80  Aligned_cols=62  Identities=24%  Similarity=0.371  Sum_probs=57.4

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPC  213 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C  213 (311)
                      .++++|.|++|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|+++|++++||+|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTH--TGEKPYK-----------CDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTT--CCSCSEE-----------CSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHc--CCCcCee-----------CCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            467899999999 899999999999998  8899999           99999999 55599999999999999998

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.47  E-value=3.9e-14  Score=94.05  Aligned_cols=55  Identities=18%  Similarity=0.400  Sum_probs=50.8

Q ss_pred             CcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         183 QYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       183 ~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      ||.|++|++.| ....|..|+++|++++||.|++|++.|.+...|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            56799999999 55599999999999999999999999999999999999998764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1.2e-14  Score=102.92  Aligned_cols=66  Identities=18%  Similarity=0.328  Sum_probs=57.2

Q ss_pred             HHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhh-hhcCC-CCccCCCCCccccCchHHHHHHHHhc
Q psy2238         158 QFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGF-KYEKN-KPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       158 L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~-~h~~~-k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |.+|+++|  ++++||.           |++|++.| ....|..|++ .|.++ +||+|++|++.|.+...|.+|+++|+
T Consensus         3 ~~~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            3 SGSSGRTH--SGEKPYE-----------CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCCCC--SCCCSEE-----------CTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CCcccccc--CCCCCeE-----------CCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            45688888  8999999           99999999 5559999997 56664 89999999999999999999999866


Q ss_pred             CC
Q psy2238         235 FG  236 (311)
Q Consensus       235 ~~  236 (311)
                      ..
T Consensus        70 ~~   71 (77)
T 2ct1_A           70 SY   71 (77)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.45  E-value=3.8e-14  Score=102.43  Aligned_cols=54  Identities=17%  Similarity=0.269  Sum_probs=48.0

Q ss_pred             cccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHH-HHhcCCC
Q psy2238         184 YSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMST-RSHKFGR  237 (311)
Q Consensus       184 ~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~  237 (311)
                      |.|++|++.| ....|.+|+++|++++||+|++|++.|.+..+|.+|+ ++|..+.
T Consensus        29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            3499999999 5559999999999999999999999999999999997 5687653

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.44  E-value=7.2e-14  Score=92.73  Aligned_cols=53  Identities=19%  Similarity=0.301  Sum_probs=47.5

Q ss_pred             CcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcC
Q psy2238         183 QYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       183 ~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      +|.|++|++.| ....|..|+++|++++||.|++|++.|.....|..|+++|++
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            34499999999 555999999999999999999999999999999999999873

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=6e-14  Score=101.14  Aligned_cols=67  Identities=15%  Similarity=0.304  Sum_probs=58.1

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCC----CCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLES----ENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~----k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      +++|.|++|+ .|.....|..|+++|  +.+    ++|.           |.+|++.| ....|..|+++|++++++.|.
T Consensus        13 ~k~~~C~~C~~~f~~~~~l~~H~~~~--~~~~~~~~~~~-----------C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~   79 (86)
T 1x6h_A           13 EKPYACSHCDKTFRQKQLLDMHFKRY--HDPNFVPAAFV-----------CSKCGKTFTRRNTMARHADNCAGPDGVEGE   79 (86)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHT--TCSSCCCCCEE-----------CSSSCCEESCHHHHHHHHHHCCCCCSCCCC
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHh--cCCcCCCcceE-----------CCCCCChhCCHHHHHHHHHHccCCCCcccC
Confidence            4678888888 799999999999987  433    6777           99999999 555999999999999999999


Q ss_pred             CCCccc
Q psy2238         215 KCGFET  220 (311)
Q Consensus       215 ~C~k~f  220 (311)
                      .|+.+|
T Consensus        80 ~~~~~~   85 (86)
T 1x6h_A           80 NSGPSS   85 (86)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            999876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.8e-13  Score=97.03  Aligned_cols=66  Identities=20%  Similarity=0.297  Sum_probs=59.4

Q ss_pred             cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhh-hhcCCCCccCCC--CCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         168 LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGF-KYEKNKPIPCPK--CGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       168 ~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +++++|.|+         |+.|++.| ....|..|++ .|++++||.|++  |++.|.+...|.+|+++|++++||.+.
T Consensus         3 ~~~~~~~C~---------~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   72 (79)
T 2dlk_A            3 SGSSGMPCD---------FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   72 (79)
T ss_dssp             SCCSSEECS---------STTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCCCccCC---------CCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCC
Confidence            567888855         66799999 5559999999 799999999999  999999999999999999999999986

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.42  E-value=2.5e-13  Score=100.74  Aligned_cols=79  Identities=18%  Similarity=0.384  Sum_probs=67.3

Q ss_pred             CCCCccccc--cccccccCCCHHHHHHhHhhhccCCCcCcccCC--CCh-hhHH--hHHHHHHhhcCcCCCCcccccccc
Q psy2238          61 VQRLPQCGH--CGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICD--FCE-AWIC--HGRKCLQTHACTCPLQDAVCLECE  133 (311)
Q Consensus        61 ~~k~~~C~~--C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~--~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~  133 (311)
                      .+++|.|.+  |++.   |.....|..|+++|+   ++++|.|+  .|+ .|..  .+..|+++|.++            
T Consensus        12 ~~~~~~C~~~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~------------   73 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKV---YTKSSHLKAHLRTHT---GEKPYKCTWEGCDWRFARSDELTRHYRKHTGA------------   73 (100)
T ss_dssp             SCCCEECCSSSCCCE---ESCHHHHHHHHHHHS---CCCCEECCSSSCCCEESSHHHHHHHHHHHTSC------------
T ss_pred             cCcceEcCCCCCCCc---ccCHHHHHHHHHHhC---CCCCeeCCCCCCCCccCCHHHHHHHHHHhCCC------------
Confidence            467899996  9999   899999999999999   77899996  699 6654  446999999877            


Q ss_pred             cccccCCCceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         134 RGVWDHGGRVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       134 ~~f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                              ++|.|++|+ .|.....|..|+++|
T Consensus        74 --------~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           74 --------KPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             --------CSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             --------CCeECCCCcCccCCHHHHHHHHHHh
Confidence                    457777788 788999999999998

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.41  E-value=2e-13  Score=95.84  Aligned_cols=60  Identities=22%  Similarity=0.433  Sum_probs=55.1

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCc
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPI  211 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~  211 (311)
                      .++++|+|++|+ .|.....|..|+++|  +++++|+           |.+|++.| ....|.+|+++|++++||
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVH--TGEKPYR-----------CNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHH--CCCCSEE-----------CTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHc--CCCCCEE-----------CCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            467899999999 899999999999999  8899999           99999999 555999999999999987

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=6.4e-14  Score=104.83  Aligned_cols=64  Identities=17%  Similarity=0.126  Sum_probs=57.0

Q ss_pred             cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhh-hh---cCCCCccCCCCCccccCchHHHHH-HHHhcCCCCCCC
Q psy2238         168 LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGF-KY---EKNKPIPCPKCGFETSQTKDLSMS-TRSHKFGRQQLN  241 (311)
Q Consensus       168 ~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~-~h---~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~~  241 (311)
                      .+++||.           |++|++.| ....|..|++ +|   .+++||.|.+|++.|...+.|..| +++|++++||.+
T Consensus        14 ~gekpy~-----------C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C   82 (102)
T 2ghf_A           14 KVEGGYE-----------CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKL   82 (102)
T ss_dssp             CCCSSEE-----------CSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEE
T ss_pred             CCCcCcC-----------CCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeC
Confidence            5667777           99999999 5559999997 48   568999999999999999999999 899999999998


Q ss_pred             C
Q psy2238         242 G  242 (311)
Q Consensus       242 ~  242 (311)
                      .
T Consensus        83 ~   83 (102)
T 2ghf_A           83 T   83 (102)
T ss_dssp             E
T ss_pred             C
Confidence            5

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.1e-13  Score=103.61  Aligned_cols=68  Identities=13%  Similarity=0.106  Sum_probs=58.2

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHH-hcc-cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHH-hhhhcCCCCccC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQAS-CQV-LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRK-GFKYEKNKPIPC  213 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~-h~~-~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H-~~~h~~~k~~~C  213 (311)
                      .+++||.|++|+ .|...+.|..|+++ |.. .+++||.           |++|++.| ....|..| +++|++++||.|
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~-----------C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C   82 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYV-----------CVECNFLTKRYDALSEHNLKYHPGEENFKL   82 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEE-----------ETTTTEEESSTHHHHTHHHHTSTTCCCEEE
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcC-----------CCCCCcccCCHHHHHHHHHHhcCCCCCeeC
Confidence            478999999999 89999999999985 611 3478888           99999999 55699999 899999999999


Q ss_pred             CCCC
Q psy2238         214 PKCG  217 (311)
Q Consensus       214 ~~C~  217 (311)
                      .++.
T Consensus        83 ~~~~   86 (102)
T 2ghf_A           83 TMVK   86 (102)
T ss_dssp             EECC
T ss_pred             Cccc
Confidence            8754

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.7e-13  Score=91.97  Aligned_cols=55  Identities=22%  Similarity=0.416  Sum_probs=49.3

Q ss_pred             CCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHH-HHhcCC
Q psy2238         182 GQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMST-RSHKFG  236 (311)
Q Consensus       182 ~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~  236 (311)
                      +||.|++|++.| ....|..|+++|++++||.|++|++.|.+...|.+|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            366799999999 5559999999999999999999999999999999997 678754

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.2e-13  Score=94.55  Aligned_cols=57  Identities=18%  Similarity=0.322  Sum_probs=51.7

Q ss_pred             cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhh-h-cCCCCccCCCCCccccCchHHHHHHHHhcC
Q psy2238         168 LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFK-Y-EKNKPIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       168 ~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~-h-~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      ++++||.           |++|++.| ....|..|+++ | .+++||.|+.|++.|.+.+.|..|+++|++
T Consensus         6 ~~~k~~~-----------C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            6 EGEHTYR-----------CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EETTEEE-----------CTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCCcceE-----------CCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            7888888           99999999 55599999998 6 588999999999999999999999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.39  E-value=2.4e-13  Score=98.55  Aligned_cols=78  Identities=21%  Similarity=0.376  Sum_probs=66.6

Q ss_pred             CCCccccc--cccccccCCCHHHHHHhHhhhccCCCcCcccCC--CCh-hhHH--hHHHHHHhhcCcCCCCccccccccc
Q psy2238          62 QRLPQCGH--CGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICD--FCE-AWIC--HGRKCLQTHACTCPLQDAVCLECER  134 (311)
Q Consensus        62 ~k~~~C~~--C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~--~C~-~f~~--~~~~H~~~H~~~~~~~~~~C~~C~~  134 (311)
                      ..+|.|.+  |++.   |.....|..|+++|+   ++++|.|+  .|+ .|..  .+..|+++|.++             
T Consensus         3 ~~~~~C~~~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-------------   63 (89)
T 2wbs_A            3 TATHTCDYAGCGKT---YTKSSHLKAHLRTHT---GEKPYHCDWDGCGWKFARSDELTRHYRKHTGH-------------   63 (89)
T ss_dssp             CCCEECCSTTTCCE---ESSHHHHHHHHTTSC---SSCCEECCSTTTCCEESSHHHHHHHHHHHHCC-------------
T ss_pred             CCCeeCCCCCCCCc---CCCHHHHHHHHHhcC---CCCCcCCCCCCCCCccCCHHHHHHHHHHcCCC-------------
Confidence            46799999  9999   899999999999999   78999997  599 6654  446999999887             


Q ss_pred             ccccCCCceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         135 GVWDHGGRVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       135 ~f~~~~~~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                             ++|.|++|+ .|...+.|..|+++|
T Consensus        64 -------~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           64 -------RPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             -------CCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             -------CCccCCCCCcccCCHHHHHHHHHhh
Confidence                   457777788 788899999999987

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3.6e-13  Score=95.42  Aligned_cols=63  Identities=16%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcC---CCCccCCCCCccccCchHHHHHH-HHhcCCCCCCC
Q psy2238         168 LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEK---NKPIPCPKCGFETSQTKDLSMST-RSHKFGRQQLN  241 (311)
Q Consensus       168 ~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~---~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~~  241 (311)
                      ++++||+           |++|++.| ....|..|+++|++   ++||.|++|++.|.....|.+|+ +.|.+..+...
T Consensus         3 ~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            3 SGSSGLQ-----------CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CSCCCEE-----------CSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCcCeE-----------CCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            7888888           99999999 55599999999986   89999999999999999999999 55666655443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.36  E-value=1.5e-13  Score=99.84  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=31.6

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhc
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYE  206 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~  206 (311)
                      ||.|++|+ .|.....|..|+++|  + ..+|.           |+.|++.| ....|..|++.++
T Consensus        31 ~~~C~~C~k~f~~~~~L~~H~~~h--~-~~~~~-----------c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           31 PFACDICGRKFARSDERKRHRDIQ--H-ILPIL-----------EDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHH--T-HHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHHh--C-CCcch-----------HHHHHHHHHHHhhhHHHHHHHH
Confidence            34445555 566666777777776  3 25565           77777777 4447777776654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=6.1e-13  Score=98.80  Aligned_cols=61  Identities=16%  Similarity=0.250  Sum_probs=52.4

Q ss_pred             ceeecCCCC-CCC-ChHHHHHHHHHhcccC-CCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         142 RVYKCCFCE-GFL-CEDDQFEHQASCQVLE-SENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       142 ~~~~C~~C~-~f~-~~~~L~~H~~~h~~~~-~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      ++|.|++|+ .|. ....|..|+++|  ++ +++|.           |.+|++.| ....|.+|+++|++++|+.-..
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~h--~~~~~~~~-----------C~~C~k~F~~~~~L~~H~~~h~~~kp~~~~~   87 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEVC--QKLQDALK-----------CQHCRKQFKSKAGLNYHTMAEHSAKPSDAEA   87 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHHH--HHHHHHHS-----------CSSSCCCCSCHHHHHHHHHHHSCSCSSCCCC
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHHH--cCCCCCEE-----------CCCCCCccCCHHHHHHHHHHHcCCCCCCCCC
Confidence            567778888 788 899999999998  77 89999           99999999 5559999999999999976543

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=9.1e-13  Score=91.33  Aligned_cols=61  Identities=16%  Similarity=0.256  Sum_probs=55.1

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCcc
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIP  212 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~  212 (311)
                      .++++|+|++|+ .|.....|..|+++|  +++++|.           |++|++.| ....|..|+++|++++|..
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H--~~~~~~~-----------C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            5 SSGHPEKCSECSYSCSSKAALRIHERIH--CTDRPFK-----------CNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGG--CCSCSEE-----------CSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHc--CCCCCEe-----------CCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            467899999999 899999999999998  8899999           99999999 5559999999999998864

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.9e-12  Score=94.14  Aligned_cols=72  Identities=14%  Similarity=0.110  Sum_probs=60.1

Q ss_pred             CCccCCCCCCC-CCcccCCCchhc-chHHHHHHhhh-hcCCCC--------ccCCCCCccccCchHHHHHHHHhcCCCCC
Q psy2238         171 ENYKCKSCNKL-GQYSCLRCKICF-CEDHARRKGFK-YEKNKP--------IPCPKCGFETSQTKDLSMSTRSHKFGRQQ  239 (311)
Q Consensus       171 k~~~C~~C~~~-~~~~C~~C~k~F-~~~~l~~H~~~-h~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  239 (311)
                      ..+.|...... ..|.|.+|++.| ....|..|+++ |.++++        |.|++|++.|.....|.+|+++|++++||
T Consensus        12 ~~~~c~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   91 (95)
T 2ej4_A           12 QELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSG   91 (95)
T ss_dssp             CCCCCCCCCSSCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCC
T ss_pred             CCceeEeecCCcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            34555544333 346699999999 55599999998 888887        99999999999999999999999999999


Q ss_pred             CCC
Q psy2238         240 LNG  242 (311)
Q Consensus       240 ~~~  242 (311)
                      .+.
T Consensus        92 ~C~   94 (95)
T 2ej4_A           92 PSS   94 (95)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            874

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=3.9e-13  Score=93.93  Aligned_cols=66  Identities=23%  Similarity=0.316  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcccCCCCccCCCCCCCCCcccC--CCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHh
Q psy2238         157 DQFEHQASCQVLESENYKCKSCNKLGQYSCL--RCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSH  233 (311)
Q Consensus       157 ~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~--~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H  233 (311)
                      .|..|+... +.++++|.           |+  .|++.| ....|..|+++|++++||.|++|++.|.+...|.+|+++|
T Consensus         5 ~~~~~~~~~-~~~~~~~~-----------C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            5 PMNNLLNYV-VPKMRPYA-----------CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             ---CTTSCC-CCCCCCEE-----------CSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             Cccchhhcc-CCCCCccC-----------CcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            344554433 37788888           75  699999 5559999999999999999999999999999999999998


Q ss_pred             c
Q psy2238         234 K  234 (311)
Q Consensus       234 ~  234 (311)
                      +
T Consensus        73 t   73 (73)
T 1f2i_G           73 T   73 (73)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.29  E-value=1.8e-12  Score=85.83  Aligned_cols=55  Identities=20%  Similarity=0.280  Sum_probs=46.6

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEK  207 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~  207 (311)
                      ++++|+|++|+ .|.....|..|+++|  ++++||.           |++|++.| ....|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTH--TGEKPYK-----------CEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHH--HCCCCEE-----------CSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHc--CCCCCcC-----------CCCCcchhCCHHHHHHHHHHhcC
Confidence            46899999999 899999999999999  8999999           99999999 55599999999874

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.29  E-value=1.2e-12  Score=101.86  Aligned_cols=52  Identities=21%  Similarity=0.267  Sum_probs=38.2

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKN  208 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~  208 (311)
                      +||.|++|+ .|.....|..|+++|    ++||.           |++|++.| ....|.+|+++|++.
T Consensus        73 ~~~~C~~C~k~f~~~~~l~~H~~~H----~~~~~-----------C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           73 SQFVCPLCLMPFSSSVSLKQHIRYT----EHTKV-----------CPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHHT----CCCCB-----------CTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCeECCCCCcccCCHhHHHHHHHHC----CCCCC-----------CCCCCcccCCHHHHHHHHHHHCCc
Confidence            456666667 677778888888875    67777           88888888 444788888888765

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.8e-12  Score=88.79  Aligned_cols=55  Identities=22%  Similarity=0.435  Sum_probs=49.4

Q ss_pred             CcccCCCchhcchHHHHHHhhhhcCCCCccCC-CCCccccCchHHHHHHHHhcCCCC
Q psy2238         183 QYSCLRCKICFCEDHARRKGFKYEKNKPIPCP-KCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       183 ~~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~-~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      ||.|++|++.|....|..|+++ ++++||.|+ .|++.|...+.|..|+++|....+
T Consensus        10 ~~~C~~C~k~f~~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           10 TQPCTYCTKEFVFDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             EEECSSSCCEEEHHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CeeccccCCccCHHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4449999999994489999998 999999999 999999999999999999987654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.27  E-value=4.3e-12  Score=90.86  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=23.8

Q ss_pred             Cccc--cccccccccCCCHHHHHHhHhhhccCCCcCcccCCC
Q psy2238          64 LPQC--GHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDF  103 (311)
Q Consensus        64 ~~~C--~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~  103 (311)
                      ||.|  ++|++.   |.....|..|+++|+   +++||+|++
T Consensus         1 p~~C~~~~C~~~---f~~~~~l~~H~~~h~---~~~~~~C~~   36 (85)
T 2j7j_A            1 MYVCHFENCGKA---FKKHNQLKVHQFSHT---QQLPYECPH   36 (85)
T ss_dssp             CEECCSTTCCCE---ESSHHHHHHHHHHHH---TTCCEECCS
T ss_pred             CccCCCCCCCcc---cCCHHHHHHHHHHhC---CCCCeeCCC
Confidence            5677  778877   777777777777777   555555544

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.25  E-value=5.1e-12  Score=83.60  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=49.4

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCC
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNK  209 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k  209 (311)
                      ||.|++|+ .|...+.|..|+++|  ++++||.           |++|++.| ....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTH--TDVRPYH-----------CTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHT--SSCCCEE-----------CSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhc--CCCCCcc-----------CCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999 899999999999998  8899999           99999999 5559999999998875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.25  E-value=5.2e-12  Score=87.98  Aligned_cols=59  Identities=22%  Similarity=0.370  Sum_probs=52.4

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKP  210 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~  210 (311)
                      .++++|+|++|+ .|.....|..|+++|  ++++||+           |++|++.| ....|.+|+++|+++.+
T Consensus        10 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           10 SGEKPYGCVECGKAFSRSSILVQHQRVH--TGEKPYK-----------CLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHGG--GCSCCEE-----------CSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CCCCCccCCCCCCccCCHHHHHHHHHhc--CCCCCeE-----------CCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            467889999999 899999999999998  8899999           99999999 55599999999987743

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.2e-11  Score=90.82  Aligned_cols=71  Identities=13%  Similarity=0.059  Sum_probs=56.7

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHH-hcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQAS-CQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~-h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      ....|.|++|+ .|.....|..|+++ |  .++++..+..|   .+|.|++|++.| ....|..|+++|++++||.|+.
T Consensus        22 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H--~~~~~~~~~~c---~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEH--VGGPEQNNHVC---YWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SCSSSSCCCCCCCCSSHHHHHHHHHHTT--TCCTTCSCCCC---CCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             CcCCCcccccccccCCHHHHHHHHHHhc--cCCCCCCccce---eccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            34567899999 89999999999998 6  77777332222   124499999999 5559999999999999999963

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.22  E-value=7.2e-12  Score=90.39  Aligned_cols=57  Identities=16%  Similarity=0.242  Sum_probs=49.9

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhh-hhcCCC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGF-KYEKNK  209 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~-~h~~~k  209 (311)
                      ..++|.|++|+ .|.....|.+|+++|  ++++||.           |++|+++| ....|.+|++ +|.+|.
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLL--HAAQVFP-----------CKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTT--SCSSSEE-----------CTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhc--cCCCccC-----------CCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            56789999999 899999999999999  9999999           99999999 5559999974 576653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=3.7e-11  Score=88.82  Aligned_cols=58  Identities=14%  Similarity=0.192  Sum_probs=47.7

Q ss_pred             ceeecCCCC-CC-CChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcc-hHHHHHH-hhhhcCCCCccC
Q psy2238         142 RVYKCCFCE-GF-LCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFC-EDHARRK-GFKYEKNKPIPC  213 (311)
Q Consensus       142 ~~~~C~~C~-~f-~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~-~~~l~~H-~~~h~~~k~~~C  213 (311)
                      ++|.|++|+ .| .....|..|+++|   +++||.           |.+|++.|. ...|..| +++|+++..|.+
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~h---~~k~~~-----------C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMENC---KQEMFT-----------CHHCGKQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHHH---CCCCCC-----------CSSSCCCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHHH---CCCCeE-----------CCCCCCeeCCHHHHHHHhHHhcCCCCCCCC
Confidence            567888888 79 8999999999996   688998           999999994 5599999 788876555544

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=2.8e-14  Score=99.54  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcch-HHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHh
Q psy2238         155 EDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCE-DHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSH  233 (311)
Q Consensus       155 ~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~-~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H  233 (311)
                      .+.|..|+++|  ++++||.           |++|++.|.. ..|..       ++||.|++|++.|.+...|..|+++|
T Consensus         3 ~~~l~~H~~~h--~~~~~~~-----------C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H   62 (73)
T 2ctu_A            3 SGSSGKRQKIH--LGDRSQK-----------CSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNE   62 (73)
T ss_dssp             CCSCCCCCCCC--CCCSEEE-----------CSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCC
T ss_pred             chhHHHHHHHh--CCCCCee-----------CCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhh
Confidence            45678899998  8899999           8889999944 45544       78999999999999999999999999


Q ss_pred             cCCCCCCCC
Q psy2238         234 KFGRQQLNG  242 (311)
Q Consensus       234 ~~~~~~~~~  242 (311)
                      ++++||.+.
T Consensus        63 ~~~~~~~C~   71 (73)
T 2ctu_A           63 SGKKTSGPS   71 (73)
T ss_dssp             CCCCCSSCC
T ss_pred             cCCCCCCCC
Confidence            999998874

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-12  Score=90.95  Aligned_cols=69  Identities=17%  Similarity=0.141  Sum_probs=60.5

Q ss_pred             hccccccccCCCCccccCcCccccccccchhhcccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCC
Q psy2238          26 RDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFC  104 (311)
Q Consensus        26 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~c~~~h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C  104 (311)
                      .+..|+++|.++++|.|+.|++.|.+... +..   +++|.|++|++.   |.....|..|+++|+   +++||+|++|
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~-l~~---~~~~~C~~C~~~---f~~~~~l~~H~~~H~---~~~~~~C~~C   73 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-LSR---RKTPMCEKCRKD---SCQEAALNKDEGNES---GKKTSGPSSG   73 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCC-CCC---SSSCCCHHHHHT---CSCCCSSCCCSSCCC---CCCCSSCCCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHH-hCc---CCCCCCCCCChh---hcCHHHHHHHHHhhc---CCCCCCCCCC
Confidence            34567889999999999999999995554 332   889999999999   899999999999999   8899999988

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=2.3e-11  Score=81.28  Aligned_cols=54  Identities=24%  Similarity=0.397  Sum_probs=47.4

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHh-hhhcCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKG-FKYEKN  208 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~-~~h~~~  208 (311)
                      +||.|++|+ .|...+.|..|+++|  ++++||.           |++|++.| ....|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSH--TNEKPYP-----------CGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTT--TSSCSEE-----------CTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHh--CCCCCcc-----------CCCCCCccCCHHHHHHHHHHHcCCc
Confidence            589999999 899999999999998  8899999           99999999 555999997 567654

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.15  E-value=1.4e-11  Score=85.63  Aligned_cols=50  Identities=22%  Similarity=0.451  Sum_probs=44.9

Q ss_pred             cccCC--Cchhc-chHHHHHHhhhhcCCCCccCCC--CCccccCchHHHHHHHHh
Q psy2238         184 YSCLR--CKICF-CEDHARRKGFKYEKNKPIPCPK--CGFETSQTKDLSMSTRSH  233 (311)
Q Consensus       184 ~~C~~--C~k~F-~~~~l~~H~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H  233 (311)
                      |.|.+  |++.| ....|..|+++|++++||+|++  |++.|.....|.+|+++|
T Consensus        18 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             EECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             eeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34877  99999 5559999999999999999965  999999999999999876

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.5e-11  Score=84.98  Aligned_cols=63  Identities=17%  Similarity=0.173  Sum_probs=52.4

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccC---CCCccCCCCCCCCCcccCCCchhc-chHHHHHHhh-hhcCCCCcc
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLE---SENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGF-KYEKNKPIP  212 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~---~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~-~h~~~k~~~  212 (311)
                      +++++|+|++|+ .|.....|..|+++|  ++   +++|.           |.+|++.| ....|.+|++ .|.++++..
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h--~~~~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRKH--AETVAALRFP-----------CEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHHH--HHHTTTCCEE-----------CTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHHh--hccCCCcccC-----------CCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            467899999999 899999999999998  65   78888           99999999 5559999995 556667765


Q ss_pred             CC
Q psy2238         213 CP  214 (311)
Q Consensus       213 C~  214 (311)
                      ..
T Consensus        70 ~~   71 (78)
T 2d9h_A           70 QE   71 (78)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.9e-11  Score=74.60  Aligned_cols=42  Identities=19%  Similarity=0.299  Sum_probs=37.8

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.++
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            577899999999999999999999999999999999998763

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=3.3e-11  Score=82.16  Aligned_cols=58  Identities=19%  Similarity=0.333  Sum_probs=49.4

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcC
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEK  207 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~  207 (311)
                      .+++||.|++|+ .|.....|..|+++++..+++||.           |++|++.| ....|..|+++|++
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP-----------CPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEE-----------CTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeE-----------CCCCCCccCCHHHHHHHHHHHcC
Confidence            356899999999 899999999999985224788998           99999999 55599999999886

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.13  E-value=9.3e-12  Score=81.65  Aligned_cols=51  Identities=14%  Similarity=0.262  Sum_probs=45.3

Q ss_pred             chhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCC
Q psy2238         190 KICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL  240 (311)
Q Consensus       190 ~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  240 (311)
                      ++.| ....|..|+++|++++||.|++|++.|...+.|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            3566 34488899999999999999999999999999999999999998874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=2.7e-11  Score=85.38  Aligned_cols=58  Identities=19%  Similarity=0.377  Sum_probs=47.2

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHH-HhcccCC-CCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCC-CC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQA-SCQVLES-ENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKN-KP  210 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~-~h~~~~~-k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~-k~  210 (311)
                      +++||.|++|+ .|.....|..|++ .|  .++ ++|+           |++|++.| ....|..|++++++. .|
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h--~~~~~~~~-----------C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQKH--TENVAKFH-----------CPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHS--SSSCSSEE-----------CSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHHhc--CCCCCccC-----------CCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            45778888899 7999999999998 45  554 7888           99999999 555999999987654 44

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.11  E-value=3.4e-11  Score=74.38  Aligned_cols=41  Identities=17%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||+|++|++.|.+.+.|.+|+++|++++||.+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            56788888999999999999999999999999998888876

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.7e-11  Score=75.04  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=38.7

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      +|+++|++++||.|++|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            578889999999999999999999999999999999999876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.10  E-value=4.7e-11  Score=75.33  Aligned_cols=43  Identities=28%  Similarity=0.345  Sum_probs=32.6

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            4667777777777777777777777777777777777777764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.8e-11  Score=74.91  Aligned_cols=43  Identities=23%  Similarity=0.263  Sum_probs=39.0

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||+|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3778899999999999999999999999999999999999885

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.09  E-value=4.5e-11  Score=75.43  Aligned_cols=43  Identities=23%  Similarity=0.346  Sum_probs=39.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4788899999999999999999999999999999999999885

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.8e-11  Score=74.42  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      +|+++|++++||.|++|++.|.+.+.|..|+++|++++||.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            478889999999999999999999999999999999998876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.7e-11  Score=74.91  Aligned_cols=43  Identities=19%  Similarity=0.276  Sum_probs=33.9

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS   44 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            4677778888888888888888888888888888888877764

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.5e-11  Score=75.42  Aligned_cols=43  Identities=21%  Similarity=0.255  Sum_probs=39.3

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5788899999999999999999999999999999999999885

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.3e-11  Score=75.54  Aligned_cols=43  Identities=23%  Similarity=0.376  Sum_probs=39.5

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||+|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            5788899999999999999999999999999999999999885

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.9e-11  Score=75.19  Aligned_cols=43  Identities=19%  Similarity=0.308  Sum_probs=39.3

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            4788899999999999999999999999999999999999885

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.4e-11  Score=75.46  Aligned_cols=43  Identities=21%  Similarity=0.255  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            4778888999999999999999999999999999999988875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.4e-11  Score=75.01  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=39.1

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4788899999999999999999999999999999999999885

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=5.9e-11  Score=74.88  Aligned_cols=43  Identities=21%  Similarity=0.293  Sum_probs=38.8

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||+|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4778899999999999999999999999999999999999885

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.7e-11  Score=74.43  Aligned_cols=42  Identities=24%  Similarity=0.297  Sum_probs=36.7

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      +|+++|++++||.|++|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            477888888999999999999999999999999998888876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7.2e-11  Score=74.39  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=31.7

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            4666777777777777777777777777777777777777664

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7e-11  Score=74.48  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||+|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            4666777777777777777777777777777777777777764

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.9e-11  Score=74.81  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCC
Confidence            3666777777777777777777777777777777777777664

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.9e-11  Score=75.22  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=37.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4778888889999999999999999999999899888888875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5e-11  Score=75.24  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=37.7

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4778888889999999999999999999999999988888875

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.3e-11  Score=75.50  Aligned_cols=43  Identities=19%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            4677788888888888888888888888888888888887774

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=6e-11  Score=74.77  Aligned_cols=43  Identities=21%  Similarity=0.279  Sum_probs=31.7

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSS
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3666777777777777777777777777777777777777664

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.3e-11  Score=75.53  Aligned_cols=43  Identities=19%  Similarity=0.277  Sum_probs=38.3

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||+|++|++.|.+.+.|..|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778889999999999999999999999999999999998885

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=6.9e-11  Score=73.75  Aligned_cols=42  Identities=17%  Similarity=0.183  Sum_probs=31.3

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS   42 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456677777777777777777777777777777777777664

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.7e-11  Score=74.86  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=37.9

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778888999999999999999999999999999999988875

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.07  E-value=8.7e-11  Score=74.08  Aligned_cols=42  Identities=21%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            566777777777777777777777777777777777777664

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.9e-11  Score=74.84  Aligned_cols=43  Identities=21%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||+|++|++.|.+.+.|..|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSS
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCC
Confidence            4666777777777777777777777777777777777777664

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.3e-11  Score=74.38  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=38.5

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      .|+++|++++||+|++|++.|.+.+.|..|+++|++++||.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            478889999999999999999999999999999999998875

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.07  E-value=7.2e-11  Score=72.79  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=37.1

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.+.+.|..|+++|++++||.+
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            56788999999999999999999999999999999998864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.3e-11  Score=75.07  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=37.9

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            4778888999999999999999999999999999999988875

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7.6e-11  Score=74.36  Aligned_cols=43  Identities=19%  Similarity=0.245  Sum_probs=38.6

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||.|++|++.|.+...|..|+++|++++||.+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4778899999999999999999999999999999999998885

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.8e-11  Score=74.82  Aligned_cols=43  Identities=19%  Similarity=0.311  Sum_probs=38.8

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|..|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778899999999999999999999999999999999999885

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.8e-11  Score=74.93  Aligned_cols=43  Identities=26%  Similarity=0.262  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4778889999999999999999999999999999999998885

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.5e-11  Score=75.01  Aligned_cols=43  Identities=16%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|..|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS   44 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCS
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCC
Confidence            4666777777777777777777777777777777777777664

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.6e-11  Score=74.93  Aligned_cols=43  Identities=26%  Similarity=0.352  Sum_probs=28.9

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|...+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSS
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            3566666667777777777777777777777777666666653

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.1e-11  Score=74.47  Aligned_cols=42  Identities=24%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      +|+++|++++||.|++|++.|...+.|.+|+++|++++||.+
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            367788888888888888888888888888888888888764

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.8e-11  Score=74.87  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=31.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            3666777777777777777777777777777777777777664

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.6e-11  Score=74.93  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=25.8

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCC
Confidence            455566666666666666666666666666666666666553

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.3e-11  Score=74.35  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=33.7

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4667777888888888888888888888888888888777764

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.9e-11  Score=73.62  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=36.5

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.+...|.+|+++|++++||.+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            67788899999999999999999999999999999988864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.06  E-value=5.4e-11  Score=75.01  Aligned_cols=41  Identities=20%  Similarity=0.213  Sum_probs=23.9

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||+|++|++.|.+.+.|.+|+++|++++||.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP   43 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCS
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCC
Confidence            45555555555555555555555555555555555555554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5e-11  Score=75.17  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=39.5

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.....|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5788899999999999999999999999999999999999885

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7e-11  Score=74.49  Aligned_cols=43  Identities=19%  Similarity=0.301  Sum_probs=32.3

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4666777777777777777777777777777777777777764

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.9e-11  Score=74.51  Aligned_cols=43  Identities=23%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCC
Confidence            3666777777777777777777777777777777777777664

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.4e-11  Score=74.64  Aligned_cols=43  Identities=23%  Similarity=0.275  Sum_probs=29.6

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            3566667777777777777777777777777777777766653

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.7e-11  Score=74.92  Aligned_cols=43  Identities=16%  Similarity=0.257  Sum_probs=31.9

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            4666777777777777777777777777777777777777664

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7e-11  Score=74.48  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            4778889999999999999999999999999999999998875

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=5.6e-11  Score=73.38  Aligned_cols=41  Identities=22%  Similarity=0.303  Sum_probs=35.0

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||+|++|++.|.+.+.|.+|+++|++++||.+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            56788888899999999999999999999888888888764

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.9e-11  Score=74.83  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778888899999999999999999999999999998888875

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.06  E-value=5.6e-11  Score=74.94  Aligned_cols=42  Identities=21%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSS
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            556666666666666666666666666666666666666653

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.8e-11  Score=74.27  Aligned_cols=43  Identities=23%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSS
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCC
Confidence            3666777777777777777777777777777777777777664

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.5e-11  Score=74.94  Aligned_cols=43  Identities=23%  Similarity=0.286  Sum_probs=37.5

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|...+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            4778888889999999999999999999999999988888875

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=7.9e-11  Score=74.23  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=37.5

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778888889999999999999999999999999998888875

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.5e-11  Score=74.17  Aligned_cols=42  Identities=19%  Similarity=0.280  Sum_probs=36.1

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            367788888899999999999999999999888888888876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.6e-11  Score=74.95  Aligned_cols=43  Identities=26%  Similarity=0.379  Sum_probs=30.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            3566677777777777777777777777777777777776663

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.9e-11  Score=74.46  Aligned_cols=43  Identities=21%  Similarity=0.286  Sum_probs=38.4

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            4778889999999999999999999999999999999998885

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.05  E-value=5.6e-11  Score=74.89  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=25.8

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP   43 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55566666666666666666666666666666666666655

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.5e-11  Score=74.69  Aligned_cols=42  Identities=21%  Similarity=0.315  Sum_probs=26.0

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555566666666666666666666666666666666666553

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.3e-11  Score=74.67  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=26.7

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||+|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS   44 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            555666666666666666666666666666666666666553

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.3e-11  Score=74.64  Aligned_cols=43  Identities=23%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.....|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4778888999999999999999999999999999999988875

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.05  E-value=3.6e-11  Score=75.92  Aligned_cols=44  Identities=18%  Similarity=0.227  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSG--TGEKPYE-----------CKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCC--SSSCSCB-----------CSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCcc--CCCCceE-----------CCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777  8899999           99999999 55599999999999999999988

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.1e-11  Score=75.13  Aligned_cols=44  Identities=23%  Similarity=0.261  Sum_probs=39.1

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSG--TGKKPYK-----------CNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCC--SCCSSCB-----------CTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCC--CCCcCeE-----------CCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            367777  8899999           99999999 55599999999999999999988

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.04  E-value=5.5e-11  Score=74.96  Aligned_cols=44  Identities=20%  Similarity=0.355  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||+           |++|++.| ....|..|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSG--MGEKTWK-----------CRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCS--CCCCCCC-----------CSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCcc--CCCcCeE-----------CCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            367787  8899999           99999999 55599999999999999999988

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=8.8e-11  Score=74.01  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=27.6

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCC
Confidence            556666666666666666666666666666666666666653

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.7e-11  Score=74.58  Aligned_cols=42  Identities=19%  Similarity=0.247  Sum_probs=28.7

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCS
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            556666667777777777777777777777777766666653

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.1e-10  Score=73.61  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=36.1

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3677888888888888888888888888888888888888775

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.5e-11  Score=74.30  Aligned_cols=42  Identities=29%  Similarity=0.363  Sum_probs=27.0

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            555666666666666666666666666666666666666553

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.5e-11  Score=74.61  Aligned_cols=43  Identities=19%  Similarity=0.291  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778899999999999999999999999999999999988763

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.7e-11  Score=74.63  Aligned_cols=43  Identities=19%  Similarity=0.306  Sum_probs=38.3

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||+|++|++.|.+...|..|+++|++++||.+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778889999999999999999999999999999999998875

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.6e-11  Score=75.37  Aligned_cols=43  Identities=14%  Similarity=0.189  Sum_probs=38.8

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||+           |++|++.| ....|.+|+++|++++||+|++|
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSG--TGGKHFE-----------CTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSS--SSSCCEE-----------CSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccc--CCCCCeE-----------CCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67777  8899999           99999999 55599999999999999999988

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=8.1e-11  Score=74.27  Aligned_cols=42  Identities=21%  Similarity=0.255  Sum_probs=35.4

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            667788888888888888888888888888888888888875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=7.1e-11  Score=73.71  Aligned_cols=42  Identities=19%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      +|+++|++++||.|++|++.|.+.+.|..|+++|++++||.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            477888888999999999999999999999999988888876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.1e-10  Score=73.60  Aligned_cols=42  Identities=24%  Similarity=0.333  Sum_probs=27.2

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS   44 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCC
Confidence            455666666666666666666666666666666666666553

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=8.7e-11  Score=74.05  Aligned_cols=42  Identities=24%  Similarity=0.284  Sum_probs=27.3

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCC
Confidence            555666666666666666666666666666666666666553

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=7.3e-11  Score=74.36  Aligned_cols=43  Identities=19%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS   44 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCS
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3566666677777777777777777777777777766666653

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.4e-11  Score=73.84  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=27.8

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.....|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            3556666666666666666666666666666666666666553

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1e-10  Score=73.75  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=23.3

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.+...|..|+++|++++||.+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP   43 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCS
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            44555555555555555555555555555555555555554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=7.5e-11  Score=74.38  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=28.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3556666666666666666666666666666666666666653

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.2e-10  Score=73.45  Aligned_cols=42  Identities=21%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS   44 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            556666777777777777777777777777777777666653

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=7.2e-11  Score=74.47  Aligned_cols=43  Identities=14%  Similarity=0.043  Sum_probs=38.6

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         3 h~~~h--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSG--SVEKPYK-----------CEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCC--CCCSSCB-----------CSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCC--CCCCCee-----------CcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56777  8899999           99999999 55599999999999999999988

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.5e-10  Score=72.26  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=36.8

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            67788899999999999999999999999999999998876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.03  E-value=5.4e-11  Score=75.03  Aligned_cols=44  Identities=18%  Similarity=0.230  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSG--TGEKRYK-----------CNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSC--TTSCCEE-----------CSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCC--CCCcCcC-----------CCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467787  8899999           99999999 55599999999999999999988

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=4.6e-11  Score=75.29  Aligned_cols=44  Identities=16%  Similarity=0.163  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSG--TGEKPYK-----------CSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCC--SSCCSCB-----------CSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCC--CCCCCcc-----------CCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467787  8899999           99999999 55599999999999999999988

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.03  E-value=5.5e-11  Score=75.02  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=38.8

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||.           |++|++.| ....|.+|+++|++++||+|++|
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSG--TGEKPFK-----------CVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCC--CCCCSBC-----------CSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCC--CCCCCcc-----------cCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67777  8899999           99999999 55599999999999999999988

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5.6e-11  Score=74.89  Aligned_cols=44  Identities=16%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||+           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSG--TGEKLYN-----------CKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCS--SCCCCCC-----------BTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccC--CCCCCeE-----------CCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            367787  8899999           99999999 55599999999999999999988

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.1e-10  Score=73.65  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=37.0

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            667888899999999999999999999999999998888875

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.02  E-value=5.4e-11  Score=74.99  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSG--TGVKPYG-----------CSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCS--CCCCSEE-----------CSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCC--CCCCceE-----------CCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467777  8899999           99999999 55599999999999999999988

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=6.3e-11  Score=74.72  Aligned_cols=43  Identities=14%  Similarity=0.166  Sum_probs=38.6

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||.           |++|++.| ....|.+|+++|++++||+|++|
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSG--TGEKPFD-----------CIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSC--CCCCSBC-----------CTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCc--CCCCCeE-----------CCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66777  8899999           99999999 55599999999999999999988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=9e-11  Score=73.97  Aligned_cols=43  Identities=28%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|.+.+.|..|+++|++++||.+.
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCC
Confidence            3566677777777777777777777777777777777777663

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=7.3e-11  Score=74.35  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +|+++|++++||.|++|++.|...+.|.+|+++|++++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778899999999999999999999999999999999998885

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=5.7e-11  Score=74.85  Aligned_cols=44  Identities=20%  Similarity=0.221  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||+           |++|++.| ....|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSG--TGEKPYK-----------CNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCC--CCCCSSE-----------ETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCC--CCCCCeE-----------CCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367777  8899999           99999999 55599999999999999999988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.4e-10  Score=73.12  Aligned_cols=42  Identities=21%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS   44 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence            566677777777777777777777777777777777777664

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=6e-11  Score=74.80  Aligned_cols=44  Identities=16%  Similarity=0.169  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSG--TGEKPYE-----------CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCC--SSCCSEE-----------CSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCc--CCCCCee-----------CCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            467787  8899999           99999999 55599999999999999999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=7e-11  Score=74.50  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=39.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||+           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSG--TGEKPFK-----------CDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCS--SSSCSCC-----------CSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCC--CCCCCcC-----------CCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777  8899999           99999999 55599999999999999999988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=5.5e-11  Score=74.92  Aligned_cols=44  Identities=18%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSG--TGERPHK-----------CNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCS--SCCCSEE-----------CSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCc--CCCCCee-----------CCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367787  8899999           99999999 55599999999999999999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=7.2e-11  Score=74.48  Aligned_cols=43  Identities=16%  Similarity=0.150  Sum_probs=38.6

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||.           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSG--AGEKPYG-----------CSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCS--SCCCSCB-----------CSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCc--CCCCCcC-----------CCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66777  8899999           99999999 55599999999999999999988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1e-10  Score=73.73  Aligned_cols=41  Identities=22%  Similarity=0.262  Sum_probs=24.1

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.+...|.+|+++|++++||.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSST
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            44555555666666666666666666666666665555554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.5e-10  Score=72.96  Aligned_cols=42  Identities=19%  Similarity=0.128  Sum_probs=30.8

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|..|+++|++++||.+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS   44 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566677777777777777777777777777777777777664

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=5.6e-11  Score=74.93  Aligned_cols=44  Identities=20%  Similarity=0.227  Sum_probs=39.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      .|+++|  ++++||.           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSG--TGEKPYK-----------CNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSC--CCSSSEE-----------CSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCC--CCCCCeE-----------CCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            367777  8899999           99999999 55599999999999999999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=5.6e-11  Score=74.95  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=39.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSG--SGEKPYK-----------CNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCS--SSSCSEE-----------CSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccC--CCCCCEe-----------CCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            467777  8899999           99999999 55599999999999999999988

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=5.4e-11  Score=74.24  Aligned_cols=43  Identities=12%  Similarity=0.167  Sum_probs=38.1

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         1 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGS--SGEKPFG-----------CSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCC--SSCCCEE-----------CSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCc--CCCcCcc-----------CCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45677  8899998           99999999 55599999999999999999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.02  E-value=9.2e-11  Score=73.87  Aligned_cols=41  Identities=22%  Similarity=0.245  Sum_probs=24.4

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP   43 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCST
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCC
Confidence            45555556666666666666666666666666665555554

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=7.1e-11  Score=74.46  Aligned_cols=44  Identities=18%  Similarity=0.226  Sum_probs=39.4

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSG--TGEKPYI-----------CAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTT--SSCCSEE-----------CSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCC--CCCcCeE-----------CCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477888  8899999           99999999 55599999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=6.7e-11  Score=74.53  Aligned_cols=44  Identities=11%  Similarity=0.087  Sum_probs=39.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||+           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSG--TGEKPHE-----------CRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSC--CCCCSCB-----------CTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCcccc--CCCCCee-----------CCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367777  8899999           99999999 55599999999999999999988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=6.7e-11  Score=74.57  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=38.5

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||+           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSG--TGEKPYK-----------CEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSS--SCCCSEE-----------CSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCC--CCCcCcc-----------CCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66777  8889998           99999999 55599999999999999999988

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=7.3e-11  Score=74.35  Aligned_cols=44  Identities=20%  Similarity=0.233  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSG--TGEKPYK-----------CNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCC--SSCCTTC-----------CTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCC--CCCcCcC-----------CCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367787  8899999           99999999 55599999999999999999988

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=8.9e-11  Score=74.00  Aligned_cols=41  Identities=24%  Similarity=0.371  Sum_probs=24.5

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            45555566666666666666666666666666666555555

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=6.6e-11  Score=74.61  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSG--TGEKPYE-----------CSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCS--SCCCSEE-----------CSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCC--CCCcCcC-----------CCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467787  8899999           99999999 55599999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.6e-11  Score=74.96  Aligned_cols=44  Identities=16%  Similarity=0.172  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSG--TGVKPYM-----------CNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCS--SCCCSEE-----------CSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             Cccccc--CCCcCeE-----------CCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477787  8899999           99999999 55599999999999999999988

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.9e-11  Score=74.82  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=39.0

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSG--TGEKPYK-----------CHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCT--TCCCCEE-----------CTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCC--CCCCCeE-----------CCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367777  8899999           99999999 55599999999999999999988

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.01  E-value=1.3e-10  Score=73.33  Aligned_cols=42  Identities=19%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS   44 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455666666666666666666666666666666666666653

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=2e-10  Score=75.18  Aligned_cols=45  Identities=20%  Similarity=0.238  Sum_probs=39.3

Q ss_pred             cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhh-hhcCCCCccCCCCCccccCc
Q psy2238         168 LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGF-KYEKNKPIPCPKCGFETSQT  223 (311)
Q Consensus       168 ~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~-~h~~~k~~~C~~C~k~f~~~  223 (311)
                      ++++||.           |++|++.| ....|.+|++ +|++++||+|++|++.|.+.
T Consensus         8 ~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            8 SVGKPYI-----------CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CSSCCEE-----------CSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCeE-----------CCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            6677777           99999999 5559999987 89999999999999999863

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.01  E-value=7.5e-11  Score=74.31  Aligned_cols=44  Identities=16%  Similarity=0.194  Sum_probs=39.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      .|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSG--TGEKPYN-----------CKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSC--CCCCSEE-----------CSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCC--CCCcCeE-----------CCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            367777  8899999           99999999 55599999999999999999988

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=8.1e-11  Score=74.14  Aligned_cols=44  Identities=18%  Similarity=0.157  Sum_probs=39.4

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSG--SGEKPYV-----------CDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTT--CCCCSEE-----------CSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCC--CCCCCeE-----------CCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467787  8899999           99999999 55599999999999999999988

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=6.2e-11  Score=74.74  Aligned_cols=44  Identities=16%  Similarity=0.181  Sum_probs=39.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||+           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSG--TGENPYE-----------CHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCC--CSSCCEE-----------CSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCC--CCCcCcC-----------CCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777  8899999           99999999 55599999999999999999988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.7e-11  Score=74.91  Aligned_cols=44  Identities=23%  Similarity=0.277  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSG--TGEKPYK-----------CNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCC--CCCSSEE-----------CSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCC--CCCCCeE-----------CCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367777  8899999           99999999 55699999999999999999988

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-10  Score=73.45  Aligned_cols=43  Identities=26%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcC-CCCCCCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKF-GRQQLNG  242 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~~~  242 (311)
                      .|+++|++++||.|++|++.|.+.+.|..|+++|++ ++||.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            367788888889999999999999999999888888 8888774

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.9e-11  Score=74.87  Aligned_cols=44  Identities=16%  Similarity=0.126  Sum_probs=39.4

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSG--SGERPYG-----------CNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCC--SCCCCEE-----------CSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCC--CCCCCEE-----------ccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            477787  8899999           99999999 55599999999999999999988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=6.8e-11  Score=74.55  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=39.1

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSG--SGEKPYK-----------CSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCS--CCCCSEE-----------CSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCcccc--CCCcCeE-----------CCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            367777  8899998           99999999 55599999999999999999988

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=5.8e-11  Score=74.89  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSG--TGERPYI-----------CTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSC--SCCCSEE-----------CTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCC--CCCCCcC-----------CCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467787  8899999           99999999 55599999999999999999988

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.00  E-value=1.2e-11  Score=83.63  Aligned_cols=54  Identities=13%  Similarity=0.257  Sum_probs=45.7

Q ss_pred             HHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchH-HHHHHhhhhcCCCCccCCCCCccccCchHHH
Q psy2238         158 QFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCED-HARRKGFKYEKNKPIPCPKCGFETSQTKDLS  227 (311)
Q Consensus       158 L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~-~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~  227 (311)
                      |..|+++|  ++++||.           |++|++.|... .|.   ++|++++||.|++|++.|....++.
T Consensus         2 L~~h~~~H--~~~k~~~-----------C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDS--TNRASFK-----------CPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSC--CSSSEEE-----------CSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHc--CCCCCcc-----------CCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            45678888  8999999           99999999665 554   7899999999999999999887654

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=4.7e-11  Score=75.24  Aligned_cols=44  Identities=14%  Similarity=-0.005  Sum_probs=39.1

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||+           |++|++.| ....|..|+++|++++||+|+.|
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSG--SGEKSHT-----------CDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCC--CCCSSEE-----------CTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccC--CCCCCeE-----------CCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467777  8899999           99999999 55599999999999999999988

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.9e-11  Score=74.32  Aligned_cols=43  Identities=16%  Similarity=0.263  Sum_probs=38.5

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||+           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         3 h~~~h--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSG--TGEKPYK-----------CMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCC--SSCCSSS-----------BTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCC--CCCCCcC-----------CCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56777  8899999           99999999 55599999999999999999988

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=8.7e-11  Score=74.04  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=39.5

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSG--SGEKPFK-----------CEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCC--CCCCSEE-----------ETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCC--CCCCCee-----------CCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477887  8899999           99999999 55599999999999999999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=6.7e-11  Score=74.63  Aligned_cols=44  Identities=16%  Similarity=0.197  Sum_probs=39.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSG--SSTKSHQ-----------CHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCC--CCSCSEE-----------CSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCC--CCCCCeE-----------CCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467777  8899998           99999999 55599999999999999999988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.7e-10  Score=72.75  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=30.2

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+...|.+|+++|++++||.+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS   44 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            556677777777777777777777777777777777777663

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.2e-11  Score=74.42  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=22.5

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCS
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            44555555555555555555555555555555555555544

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=6.6e-11  Score=74.61  Aligned_cols=44  Identities=16%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSG--TGEKPFK-----------CGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCC--SSCCSEE-----------CTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCC--CCCCCeE-----------CCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777  8899999           99999999 55699999999999999999988

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.00  E-value=2e-10  Score=79.83  Aligned_cols=55  Identities=22%  Similarity=0.324  Sum_probs=48.6

Q ss_pred             CCCceeecC--CCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhc
Q psy2238         139 HGGRVYKCC--FCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYE  206 (311)
Q Consensus       139 ~~~~~~~C~--~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~  206 (311)
                      .++++|.|+  .|+ .|.....|..|+++|  +++++|.           |++|++.| ....|.+|+++|+
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h--~~~~~~~-----------C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIRIH--TGQKPFQ-----------CRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHHHH--HCCCCEE-----------CTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHHhh--CCCCCeE-----------CCCCCchhCCHHHHHHHHHhcC
Confidence            467889997  599 899999999999999  8899999           99999999 5559999998874

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.1e-11  Score=74.41  Aligned_cols=44  Identities=14%  Similarity=0.105  Sum_probs=39.3

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSG--TGEKPCK-----------CTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCC--CCCCSEE-----------CSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccC--CCCCCee-----------CCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467777  8899999           99999999 55699999999999999999988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=73.44  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=25.4

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|+++|++++||.+
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP   43 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCC
Confidence            45556666666666666666666666666666666666555

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=6.5e-11  Score=74.63  Aligned_cols=44  Identities=16%  Similarity=0.187  Sum_probs=39.0

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSG--TGEKPYR-----------CAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSS--SCCCSEE-----------CSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCC--CCCCCeE-----------CCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467787  8899999           99999999 55599999999999999999976

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=8.7e-11  Score=74.04  Aligned_cols=43  Identities=12%  Similarity=-0.004  Sum_probs=38.5

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         3 H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSG--SREKSHQ-----------CRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCS--SCCCCEE-----------CTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccccc--CCCCCEE-----------ccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66777  8889998           99999999 55599999999999999999988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=7.4e-11  Score=74.37  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=38.6

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||+           |++|++.| ....|.+|+++|++++||+|++|
T Consensus         3 H~~~h--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSG--TGEKPYK-----------CEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCC--SSCCSEE-----------ETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCC--CCCCCeE-----------CCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            66777  8899999           99999999 55599999999999999999988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=9.4e-11  Score=73.89  Aligned_cols=43  Identities=16%  Similarity=0.204  Sum_probs=38.5

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         3 h~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSG--SGEKPFK-----------CEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCC--CCCCSEE-----------CSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCC--CCCCCcC-----------CCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56777  8899998           99999999 55599999999999999999988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=8.1e-11  Score=74.19  Aligned_cols=44  Identities=16%  Similarity=0.155  Sum_probs=39.1

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         2 ~h~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSG--SGEKPYG-----------CNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCC--CSSCCEE-----------ETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCcc--CCCcCeE-----------CCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            367777  8899999           99999999 55599999999999999999988

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.3e-10  Score=72.31  Aligned_cols=42  Identities=24%  Similarity=0.251  Sum_probs=27.8

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHH-HhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTR-SHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~~  242 (311)
                      |+++|++++||.|++|++.|.+.+.|.+|++ +|++++||.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~   45 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS   45 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCC
Confidence            5566666666666666666666666666666 66666666653

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.98  E-value=1.1e-10  Score=73.51  Aligned_cols=43  Identities=19%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||+           |++|++.| ....|..|+++|++++||.|++|
T Consensus         3 h~~~h--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSG--AGVNPYK-----------CSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSS--CCCCSEE-----------CSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCC--CCCCCeE-----------CCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677  8899998           99999999 55599999999999999999988

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.7e-10  Score=77.78  Aligned_cols=56  Identities=18%  Similarity=0.282  Sum_probs=49.4

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccC-CCchhc-chHHHHHHhhhhcCCCC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCL-RCKICF-CEDHARRKGFKYEKNKP  210 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~-~C~k~F-~~~~l~~H~~~h~~~k~  210 (311)
                      +++||+|++|+ .|. .+.|..|+++   ++++||+           |+ +|++.| ....|..|+++|...+|
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~---~~~~p~~-----------C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ---CPRLPVA-----------CPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH---CSSSEEE-----------CTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH---cCCcCcc-----------CCcccCcccccHHHHHHHHHhhcccCc
Confidence            46899999999 899 9999999987   7789999           99 999999 55599999999987765

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3.6e-10  Score=71.22  Aligned_cols=42  Identities=17%  Similarity=0.180  Sum_probs=37.2

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      ++++|++++||.|++|++.|.+...|..|+++|++++||.+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            356788899999999999999999999999999999999885

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.7e-11  Score=85.31  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=59.4

Q ss_pred             HHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         157 DQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       157 ~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      .|..|+++|  .+++|+.           |..|++.|....|..|. .|.+++||.|+.|++.|. ...|..|+++|.++
T Consensus         4 ~L~~H~~~~--c~~r~~~-----------C~~C~~~~~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            4 GSSGHEETE--CPLRLAV-----------CQHCDLELSILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCSCCCCCC--CCCCCEE-----------CSSSCCEECHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHHhhCccc--CCCcccC-----------CcccChHhhHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            466777776  8888888           99999999888999999 899999999999999988 49999999999987


Q ss_pred             CCC
Q psy2238         237 RQQ  239 (311)
Q Consensus       237 ~~~  239 (311)
                      ...
T Consensus        69 ~~~   71 (75)
T 2d9k_A           69 GSG   71 (75)
T ss_dssp             SSS
T ss_pred             cCC
Confidence            543

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.5e-10  Score=73.13  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=38.5

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhh-hhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGF-KYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~-~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||.           |++|++.| ....|..|++ +|++++||+|++|
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSG--TGKKPYE-----------CIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCC--CCCCSBC-----------CSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccc--CCCCCEE-----------CCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            66777  8899999           99999999 5559999999 9999999999988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.1e-10  Score=73.53  Aligned_cols=43  Identities=14%  Similarity=0.071  Sum_probs=38.2

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++|
T Consensus         3 h~~~h--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSG--SGEKPYK-----------CVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCC--CSCCSEE-----------CSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCC--CCCCCeE-----------CcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56677  8889998           99999999 55599999999999999999988

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=1.2e-09  Score=74.27  Aligned_cols=44  Identities=16%  Similarity=0.334  Sum_probs=37.9

Q ss_pred             hhcCCCCccCCC--CCccccCchHHHHHH-HHhcCCCCCCCCCCCCC
Q psy2238         204 KYEKNKPIPCPK--CGFETSQTKDLSMST-RSHKFGRQQLNGDDYDD  247 (311)
Q Consensus       204 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~-~~H~~~~~~~~~~~~~~  247 (311)
                      .++++|||+|..  |+|+|++.++|.+|+ ++|++++||.+...+++
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~~~~   67 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEEE   67 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccccccc
Confidence            468899999965  999999999999998 68999999999744443

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.8e-10  Score=72.61  Aligned_cols=43  Identities=19%  Similarity=0.169  Sum_probs=38.2

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKC  216 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C  216 (311)
                      |+++|  +++++|.           |++|++.| ....|..|+++|++++||+|++|
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSG--SGEKPFK-----------CKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSC--CCCCSEE-----------CSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCC--CCCCCEE-----------CCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66777  8899998           99999999 55599999999999999999976

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4.5e-10  Score=68.82  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=32.1

Q ss_pred             hhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         203 FKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       203 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      ++|++++||.|++|++.|.....|..|+++|++++||.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            467788888888888888888888888888888888764

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=9.2e-10  Score=68.26  Aligned_cols=40  Identities=15%  Similarity=0.164  Sum_probs=33.1

Q ss_pred             hhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         203 FKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       203 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      ++|++++||.|+.|++.|...+.|.+|+++|++++||.+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            4677888888888888888888888888888888888764

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.5e-10  Score=70.85  Aligned_cols=42  Identities=21%  Similarity=0.340  Sum_probs=34.4

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +.++|++++||+|++|++.|.+...|.+|+++|++++||.+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            345678888888888888888888888888888888888774

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.88  E-value=9.2e-10  Score=69.99  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=29.3

Q ss_pred             cCCCchhc-chHHHHHHhhhhcCCCCccCCCCCc
Q psy2238         186 CLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGF  218 (311)
Q Consensus       186 C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k  218 (311)
                      |++|++.| ....|.+|+++|++++||.|++|+|
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             ETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            99999999 4558999999999999999999986

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.1e-10  Score=69.74  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=25.1

Q ss_pred             hhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         202 GFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       202 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      +++|++++||.|++|++.|.+...|.+|+++|++++||.+
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCC
Confidence            3455666666666666666666666666666666666655

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.6e-10  Score=70.22  Aligned_cols=43  Identities=19%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSG--TGGKPYQ-----------CNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSS--SSSCSSS-----------CCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             Cccccc--CCCCCeE-----------CCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467777  8899999           99999999 5559999999999999999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.2e-09  Score=68.27  Aligned_cols=41  Identities=24%  Similarity=0.288  Sum_probs=38.9

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE  105 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~  105 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   ++++|.|++|+
T Consensus         5 h~~~k~~~C~~C~k~---f~~~~~l~~H~~~H~---~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLR---FKRKDRMSYHVRSHD---GSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEE---CSCHHHHHHHHHHHS---CCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcc---cCCHHHHHHHHHHcc---CCCCCCCcCCC
Confidence            788999999999999   999999999999999   88999999996

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=8.4e-10  Score=65.85  Aligned_cols=37  Identities=14%  Similarity=0.264  Sum_probs=33.5

Q ss_pred             hhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCC
Q psy2238         202 GFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       202 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      +++|++++||.|++|++.|...+.|..|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3578899999999999999999999999999998765

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.87  E-value=4.4e-10  Score=69.18  Aligned_cols=41  Identities=12%  Similarity=0.183  Sum_probs=35.9

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      |+++|  ++++||+           |++|++.| ....|..|+++|++++||.|+
T Consensus         1 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGS--SGENPYE-----------CSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSS--SSCCSEE-----------CSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCC--CCCCCcc-----------CCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            45677  8899998           99999999 555999999999999999995

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=4.1e-10  Score=70.92  Aligned_cols=42  Identities=17%  Similarity=0.249  Sum_probs=37.3

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      |+++|  ++++||+           |++|++.| ....|..|+++|++++||+|++
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSG--TGQRPYE-----------CIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCC--CCSSSEE-----------CSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             Ccccc--CCCcCcC-----------CCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            67777  8899999           99999999 5559999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5e-10  Score=70.46  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||+           |++|++.| ....|.+|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSG--TGEKPYK-----------CNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC--CCCCSCB-----------CSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCC--CCCcCeE-----------CCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6e-10  Score=70.04  Aligned_cols=43  Identities=14%  Similarity=0.187  Sum_probs=37.7

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  +++++|.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSG--TGEKPYE-----------CSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCC--SSCCSSC-----------CSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCC--CCCCCcC-----------CCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467777  8899999           99999999 5559999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.7e-10  Score=69.91  Aligned_cols=43  Identities=16%  Similarity=0.218  Sum_probs=37.7

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSG--SGEKPFQ-----------CEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCC--CCSSSBC-----------CSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCC--CCCcCCC-----------CCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467777  8899999           99999999 5559999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.2e-10  Score=70.10  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=36.9

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      |+++|  ++++||+           |++|++.| ....|.+|+++|++++||.|++
T Consensus         3 h~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSG--TGEKPYK-----------CQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSC--SSCCSCB-----------CSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCC--CCCcccC-----------CCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            56777  8899999           99999999 5559999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.9e-10  Score=70.15  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=17.6

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      +|++++||.|++|++.|.+...|.+|+++|++++||.+
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP   43 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            34444444444444444444444444444444444443

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.86  E-value=1.1e-09  Score=65.33  Aligned_cols=36  Identities=22%  Similarity=0.425  Sum_probs=33.4

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      |+++|++++||+|+.|++.|.+...|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            778899999999999999999999999999999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.5e-10  Score=70.24  Aligned_cols=43  Identities=12%  Similarity=0.138  Sum_probs=37.5

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      .|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSG--TGENPFI-----------CSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCC--CSCCSCB-----------CTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCC--CCCCCEE-----------CCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.5e-10  Score=70.70  Aligned_cols=43  Identities=16%  Similarity=0.196  Sum_probs=37.6

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      .|+++|  ++++||+           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSG--TGERHYE-----------CSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSS--CCCCCEE-----------CSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCc--CCCCCeE-----------CCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.86  E-value=4.4e-10  Score=70.75  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=37.6

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      .|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSG--TGEKPFE-----------CAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC--CCCCSEE-----------CSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCC--CCCCCEE-----------CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.6e-10  Score=70.21  Aligned_cols=43  Identities=23%  Similarity=0.284  Sum_probs=37.5

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSG--TGEKPYK-----------CNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC--SCCCTTC-----------CSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCC--CCCcCeE-----------CCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.8e-10  Score=70.10  Aligned_cols=43  Identities=21%  Similarity=0.268  Sum_probs=37.6

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|.+|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSG--TGEKPYI-----------CNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCC--CSCCSEE-----------CSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCC--CCCcCEE-----------CCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            367777  8899998           99999999 5559999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.2e-10  Score=70.06  Aligned_cols=43  Identities=21%  Similarity=0.251  Sum_probs=37.5

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||+           |++|++.| ....|.+|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSG--MGEKCYK-----------CDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCC--CCCCCCB-----------CSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCcccc--CCCCCeE-----------CCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5e-10  Score=70.44  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSG--TGEKPYE-----------CKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC--SSCCSEE-----------CSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCC--CCCcCeE-----------CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999975

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.7e-10  Score=70.17  Aligned_cols=43  Identities=16%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      .|+++|  +++++|.           |++|++.| ....|.+|+++|++++||+|++
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSG--TGERHYE-----------CSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSC--SSCCCEE-----------CSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCccc--CCCCCCC-----------CCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999974

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.85  E-value=2e-09  Score=74.54  Aligned_cols=54  Identities=17%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             CCCceeecCC--CC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCC--Cchhc-chHHHHHHhhhh
Q psy2238         139 HGGRVYKCCF--CE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLR--CKICF-CEDHARRKGFKY  205 (311)
Q Consensus       139 ~~~~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~--C~k~F-~~~~l~~H~~~h  205 (311)
                      ...++|.|.+  |+ .|.....|..|+++|  ++++||+           |.+  |++.| ....|.+|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H--~~~~~~~-----------C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTH--TGEKPFS-----------CSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHH--SSSCSEE-----------CCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhc--CCCCCcc-----------CCCCCCCcccCCHHHHHhHhhcC
Confidence            4678999998  99 899999999999999  9999999           854  99999 555999998876

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.2e-10  Score=70.02  Aligned_cols=43  Identities=19%  Similarity=0.275  Sum_probs=37.7

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSG--TGEKPYK-----------CNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC--CCSCCCC-----------CTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             Cccccc--CCCCCeE-----------CCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467777  8899999           99999999 5559999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.1e-10  Score=70.36  Aligned_cols=43  Identities=19%  Similarity=0.245  Sum_probs=37.6

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSG--TGEKPYK-----------CNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCS--CCCCCEE-----------CTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCC--CCCCCee-----------ccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.3e-10  Score=70.29  Aligned_cols=43  Identities=16%  Similarity=0.254  Sum_probs=37.7

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      .|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSG--TGEKPYN-----------CEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSS--SCCCSEE-----------CTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCc--CCCcCcc-----------CCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            367777  8899998           99999999 5559999999999999999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=6.8e-10  Score=69.86  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=36.9

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      |+++|  ++++||+           |++|++.| ....|.+|+++|++++||+|+.
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSG--SGKKPYE-----------CKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSC--CCSCSCC-----------CSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCc--CCCCCcC-----------CCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            66777  8899999           99999999 5559999999999999999973

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=7.2e-10  Score=69.75  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=37.1

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         3 h~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSG--AGKKLFK-----------CNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSC--CSSCCCB-----------CTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCC--CCCCCEE-----------CCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            66777  8899999           99999999 5559999999999999999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=1.3e-09  Score=68.20  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=18.4

Q ss_pred             cCCCchhc-chHHHHHHhhhhcCCCCccCCCCC
Q psy2238         186 CLRCKICF-CEDHARRKGFKYEKNKPIPCPKCG  217 (311)
Q Consensus       186 C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~  217 (311)
                      |++|++.| ....|..|+++|++++||.|++|+
T Consensus        13 C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A           13 CPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             ETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            55566666 333556666666666666666554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=7.8e-10  Score=68.01  Aligned_cols=41  Identities=12%  Similarity=0.168  Sum_probs=35.8

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      |+++|  ++++||.           |++|++.| ....|.+|+++|++++||+|.
T Consensus         1 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGS--SGEKPYS-----------CAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSS--CSCCSCB-----------CTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCc--CCCCCeE-----------CCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45677  8899999           99999999 555999999999999999984

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=5.9e-10  Score=70.06  Aligned_cols=43  Identities=14%  Similarity=0.225  Sum_probs=37.5

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSG--TGEKPFE-----------CSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSS--CCCCSEE-----------CSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCC--CCCCCcC-----------CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            367777  8899998           99999999 5559999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.83  E-value=2.2e-09  Score=64.92  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             hcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         205 YEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       205 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |++++||.|++|++.|...+.|..|+++|++++||..
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5678999999999999999999999999999988865

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=4.1e-10  Score=70.89  Aligned_cols=43  Identities=14%  Similarity=0.135  Sum_probs=37.7

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|+.
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSG--TGEKPYS-----------CNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCC--SSCCSEE-----------ETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccC--CCCCCeE-----------CcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467787  8899999           99999999 5559999999999999999974

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.83  E-value=2.1e-09  Score=63.12  Aligned_cols=35  Identities=14%  Similarity=0.062  Sum_probs=31.7

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      +|++++||.|++|++.|.+.+.|..|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            47889999999999999999999999999998764

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=6.5e-10  Score=69.86  Aligned_cols=43  Identities=16%  Similarity=0.226  Sum_probs=37.5

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|++
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSG--TGEKPYR-----------CGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC--CCCCCEE-----------CSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCC--CCCCCeE-----------CCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            367777  8899998           99999999 5559999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.2e-10  Score=68.63  Aligned_cols=42  Identities=12%  Similarity=0.083  Sum_probs=36.9

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|+
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSG--TGMKPYV-----------CNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCS--SSSSSSC-----------CTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCC--CCCcCeE-----------CCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            367777  8899999           99999999 555999999999999999995

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=1.9e-09  Score=70.35  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=38.6

Q ss_pred             CCCceeecCCCC-CCCChHHHHHHHH-HhcccCCCCccCCCCCCCCCcccCCCchhcch
Q psy2238         139 HGGRVYKCCFCE-GFLCEDDQFEHQA-SCQVLESENYKCKSCNKLGQYSCLRCKICFCE  195 (311)
Q Consensus       139 ~~~~~~~C~~C~-~f~~~~~L~~H~~-~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~  195 (311)
                      .+++||.|++|+ .|.....|.+|++ +|  ++++||+           |++|++.|.+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H--~~~k~~~-----------C~~C~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVH--TSERPHK-----------CQVWVSGPSS   53 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTS--CCCCCCC-----------SSSSCCSSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhc--CCCCCcc-----------CCCCCCCCCC
Confidence            467899999999 8999999999997 88  8999999           8888888843

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=5.6e-10  Score=70.27  Aligned_cols=43  Identities=14%  Similarity=0.156  Sum_probs=37.6

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||+           |++|++.| ....|.+|+++|++++||.|+.
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSG--TGEKPYK-----------CSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCC--CSCCCEE-----------CSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             Cccccc--CCCCCEE-----------CcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            467787  8899999           99999999 5559999999999999999973

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.4e-10  Score=68.89  Aligned_cols=42  Identities=14%  Similarity=0.188  Sum_probs=37.0

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      .|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|+
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSG--TGENPYE-----------CCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSS--SSCCSCE-----------ETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCcccc--CCCcCee-----------CCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            367787  8899999           99999999 555999999999999999995

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.5e-09  Score=67.22  Aligned_cols=40  Identities=15%  Similarity=0.091  Sum_probs=38.0

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCC
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFC  104 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C  104 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   +++||+|++|
T Consensus         7 h~~~k~~~C~~C~k~---f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSECGKS---FSGSYRLTQHWITHT---REKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSSCCC---CSSHHHHHHHHTHHH---HCCCCSCCCC
T ss_pred             CCCCCCeeCCCCCcc---cCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            788999999999999   999999999999999   8899999988

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=6.2e-10  Score=69.30  Aligned_cols=42  Identities=12%  Similarity=0.197  Sum_probs=37.0

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|+
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSG--AGENPFK-----------CSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCC--SCCCSEE-----------CSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCcccc--CCCCCeE-----------CCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            367777  8899999           99999999 556999999999999999995

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=9.7e-10  Score=67.55  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=35.6

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPC  213 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C  213 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||.|
T Consensus         2 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSS--GGEKPYR-----------CDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCC--CSCCSBC-----------CTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             Ccccc--CCCCCee-----------CCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            66777  8899999           99999999 55599999999999999998

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.2e-09  Score=68.66  Aligned_cols=42  Identities=17%  Similarity=0.229  Sum_probs=36.5

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||.|+.
T Consensus         3 h~~~h--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSG--TGEKPYE-----------CDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCC--CCSSSCB-----------CTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCc--CCCCCcC-----------CCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            55677  8889998           99999999 5569999999999999999963

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=8.8e-10  Score=69.34  Aligned_cols=42  Identities=19%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcC-CCCccCCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEK-NKPIPCPK  215 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~-~k~~~C~~  215 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++ ++||.|++
T Consensus         3 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSG--QKEKCFK-----------CNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCC--CCSCCEE-----------CSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             Ccccc--CCCCCEE-----------CcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66777  8889998           99999999 55699999999999 99999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=9.1e-10  Score=68.43  Aligned_cols=42  Identities=12%  Similarity=0.171  Sum_probs=36.9

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      +|+++|  ++++||+           |++|++.| ....|..|+++|++++||.|+
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSG--TGEKPYE-----------CNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCC--SCCCSEE-----------CTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCC--CCCCCeE-----------CCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            467777  8899999           99999999 555999999999999999995

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=9.2e-10  Score=69.23  Aligned_cols=43  Identities=16%  Similarity=0.154  Sum_probs=37.5

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||+           |++|++.| ....|..|+++|++++||.|+.
T Consensus         2 ~h~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSG--SGERPFK-----------CNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCS--SCCCSCC-----------CSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCC--CCCCCeE-----------CCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999974

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=2.3e-09  Score=68.10  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=38.4

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE  105 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~  105 (311)
                      |..+++|.|.+|++.   |.....|..|+++|+   +++||+|++|+
T Consensus         7 ~~~~k~~~C~~C~k~---f~~~~~L~~H~~~H~---~~k~~~C~~C~   47 (48)
T 2epr_A            7 GRTRKQVACEICGKI---FRDVYHLNRHKLSHS---GEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCSEEETTTTEE---ESSHHHHHHHGGGSC---SCCCCCSCCCC
T ss_pred             CCCCcCeeCCCCCcc---cCCHHHHHHHHHhcC---CCCCccCCCCC
Confidence            677899999999999   899999999999999   88999999996

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.2e-09  Score=67.15  Aligned_cols=40  Identities=15%  Similarity=0.131  Sum_probs=35.2

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPC  213 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C  213 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||+|
T Consensus         2 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSS--GGEKPYP-----------CEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCC--SSSCCBC-----------CSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCccc--CCCCCEE-----------CCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            55677  8899999           99999999 55599999999999999998

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=3e-09  Score=66.77  Aligned_cols=40  Identities=15%  Similarity=0.236  Sum_probs=37.8

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCC
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFC  104 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C  104 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   +++||+|++|
T Consensus         7 h~~~~~~~C~~C~k~---f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKS---FRYGSSLTVHQRIHT---GEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSSCCE---ESSHHHHHHHHTTTS---SSCCCSCCCC
T ss_pred             CCCCCCeeCcccCcc---cCChHHHHHHHHHhC---CCCCCCCCCC
Confidence            788999999999999   899999999999999   8899999987

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.78  E-value=9.3e-10  Score=71.88  Aligned_cols=49  Identities=12%  Similarity=0.012  Sum_probs=43.4

Q ss_pred             CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCcc
Q psy2238         151 GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIP  212 (311)
Q Consensus       151 ~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~  212 (311)
                      .|.....|..|+++|  ++++||.           |++|++.| ....|..|+++|++++||.
T Consensus         5 ~~~~~~~l~~h~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            5 RAKHPPGTEKPRSRS--QSEQPAT-----------CPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCSCSSCCCCCHHHH--TSSCCEE-----------CTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccCCCcchhhHHHhc--CCCCCcc-----------CCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            477788899999999  9999999           99999999 5559999999999999984

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.78  E-value=3e-09  Score=62.53  Aligned_cols=35  Identities=11%  Similarity=0.164  Sum_probs=31.3

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      +|++++||.|++|++.|...+.|.+|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            47889999999999999999999999999988764

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=1.3e-09  Score=67.72  Aligned_cols=42  Identities=14%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      .|+++|  ++++||.           |++|++.| ....|..|+++|++++||+|+
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSG--HTRKRYE-----------CSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCC--CCCSSEE-----------CTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             Cccccc--CCCCCeE-----------CCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            467777  8899998           99999999 555999999999999999995

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.1e-09  Score=68.70  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=37.5

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPK  215 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~  215 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSG--TGEKPYE-----------CNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSS--CCCCSSE-----------ETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCC--CCCCCeE-----------CCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            367777  8899999           99999999 5559999999999999999963

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.1e-09  Score=67.31  Aligned_cols=40  Identities=23%  Similarity=0.286  Sum_probs=35.3

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPC  213 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C  213 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||.|
T Consensus         2 H~~~H--~~~k~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSS--GGEKPYK-----------CETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCC--CSSCSEE-----------CTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCccc--CCCCCEe-----------CCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            56677  8899998           99999999 55599999999999999998

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=4.5e-09  Score=63.45  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=29.8

Q ss_pred             hhcCCCCccCCC--CCccccCchHHHHHHHHhcCC
Q psy2238         204 KYEKNKPIPCPK--CGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       204 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      .+++++||+|+.  |+++|.+++.|.+|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            367899999986  999999999999999999875

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1e-09  Score=68.99  Aligned_cols=42  Identities=14%  Similarity=0.216  Sum_probs=37.2

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|+
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSG--TGEKPFQ-----------CKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCS--CCCCSEE-----------CSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccc--CCCCCee-----------CcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            467777  8899999           99999999 556999999999999999996

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=1.8e-09  Score=67.14  Aligned_cols=41  Identities=10%  Similarity=0.044  Sum_probs=35.7

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||+|+
T Consensus         3 h~~~h--~~~~~~~-----------C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSG--AAKTTSE-----------CQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSC--SSSCCCC-----------CTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCC--CCCcCeE-----------CCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            45666  8889998           99999999 555999999999999999995

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.75  E-value=1.6e-09  Score=66.56  Aligned_cols=40  Identities=15%  Similarity=0.188  Sum_probs=35.0

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPC  213 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C  213 (311)
                      |+++|  ++++||.           |++|++.| ....|..|+++|++++||+|
T Consensus         2 H~~~H--~~~~~~~-----------C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSS--GGETPYL-----------CGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCC--CSSCCEE-----------CSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccC--CCCCCeE-----------CCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            45666  8889988           99999999 55599999999999999998

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.74  E-value=8.2e-09  Score=59.98  Aligned_cols=32  Identities=19%  Similarity=0.344  Sum_probs=28.0

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCCCCCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL  240 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  240 (311)
                      +||.|++|++.|...+.|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999888875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=3.9e-09  Score=66.81  Aligned_cols=40  Identities=30%  Similarity=0.472  Sum_probs=24.2

Q ss_pred             hhhhcCCCCccCC--CCCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         202 GFKYEKNKPIPCP--KCGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       202 ~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      .++|++++||.|.  .|++.|.....|.+|+++|++++||.+
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C   45 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP   45 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSS
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3455566666665  566666666666666666666666555

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.6e-09  Score=67.40  Aligned_cols=42  Identities=19%  Similarity=0.235  Sum_probs=36.8

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      +|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|.
T Consensus         2 ~H~~~H--~~~~~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSG--TDSKSYN-----------CNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCC--CCCCCEE-----------ETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCC--CCCCCeE-----------CcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            367777  8899998           99999999 556999999999999999984

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.70  E-value=8.7e-09  Score=61.72  Aligned_cols=36  Identities=19%  Similarity=0.434  Sum_probs=32.1

Q ss_pred             hcCCCCccCC--CCCccccCchHHHHHHHHhcCCCCCC
Q psy2238         205 YEKNKPIPCP--KCGFETSQTKDLSMSTRSHKFGRQQL  240 (311)
Q Consensus       205 h~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~  240 (311)
                      |++++||.|.  .|++.|.+.+.|.+|+++|++++||.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5788999999  59999999999999999999988873

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=7.7e-09  Score=61.57  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=31.7

Q ss_pred             hhhcCCCCccCCCCCccccCc-hHHHHHHHHhcCCC
Q psy2238         203 FKYEKNKPIPCPKCGFETSQT-KDLSMSTRSHKFGR  237 (311)
Q Consensus       203 ~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~  237 (311)
                      ++|++++||+|++|++.|.+. +.|.+|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            468899999999999999999 99999999998753

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=1.3e-08  Score=62.90  Aligned_cols=39  Identities=10%  Similarity=0.011  Sum_probs=36.3

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCC
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDF  103 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~  103 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   +++||+|++
T Consensus         5 h~~~k~~~C~~C~k~---f~~~~~L~~H~~~H~---~~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNECDCR---FSEEASLKRHTLQTH---SDKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSSCCC---BSSHHHHHHHHHHHT---CTTCSSSCC
T ss_pred             cCCCCCEECCCCCCe---eCChHHHHHHHHhhC---CCCCccCCC
Confidence            778999999999999   999999999999999   889999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.1e-09  Score=65.55  Aligned_cols=42  Identities=12%  Similarity=0.088  Sum_probs=36.4

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCP  214 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~  214 (311)
                      .|+++|  ++++||.           |++|++.| ....|..|+++|++++||.|.
T Consensus         2 ~H~~~H--~~~k~~~-----------C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSG--SGEKPYE-----------CNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCC--CCCCSEE-----------CSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCccc--CCCcCeE-----------CCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            367777  8899999           99999999 555999999999999999873

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=7.9e-09  Score=61.67  Aligned_cols=35  Identities=14%  Similarity=0.221  Sum_probs=31.6

Q ss_pred             hhhhcCCCCccCCCCCccccCchHHHHH-HHHhcCC
Q psy2238         202 GFKYEKNKPIPCPKCGFETSQTKDLSMS-TRSHKFG  236 (311)
Q Consensus       202 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~  236 (311)
                      +++|++++||+|+.|++.|...+.|..| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            3578999999999999999999999999 8999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-08  Score=60.12  Aligned_cols=34  Identities=24%  Similarity=0.580  Sum_probs=31.0

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .|++++||+|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            5788999999999999999999999999998763

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.3e-08  Score=60.17  Aligned_cols=34  Identities=21%  Similarity=0.462  Sum_probs=30.9

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .|++++||+|++|++.|...+.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            5788999999999999999999999999998753

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=9.1e-09  Score=60.83  Aligned_cols=34  Identities=12%  Similarity=-0.003  Sum_probs=30.6

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .|++++||+|++|++.|...+.|.+|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            5788999999999999999999999999998753

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.66  E-value=4.8e-09  Score=66.35  Aligned_cols=41  Identities=17%  Similarity=0.187  Sum_probs=36.4

Q ss_pred             HHHHHhhhhcCCCCccCC--CCCccccCchHHHHHHHHhcCCC
Q psy2238         197 HARRKGFKYEKNKPIPCP--KCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       197 ~l~~H~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .++.|+..|++++||.|+  .|++.|.+.+.|.+|+++|++++
T Consensus         5 ~~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            456778889999999995  79999999999999999998763

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=2.1e-08  Score=62.90  Aligned_cols=39  Identities=21%  Similarity=0.331  Sum_probs=36.3

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCC
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDF  103 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~  103 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   +++||+|++
T Consensus         7 h~~~k~~~C~~C~k~---F~~~~~L~~H~~~H~---~~k~~~C~~   45 (46)
T 2eom_A            7 GHGERGHRCSDCGKF---FLQASNFIQHRRIHT---GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCSSSCCC---CSSHHHHHHHHHHHS---SCCCSSCCC
T ss_pred             CCCCCCcCCCCCCCe---eCChHHHHHHHHHhC---CCCCCCCCC
Confidence            788999999999999   999999999999999   889999974

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.9e-08  Score=59.26  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=30.8

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .|++++||.|++|++.|.+...|.+|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4788999999999999999999999999998763

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.8e-08  Score=62.82  Aligned_cols=39  Identities=21%  Similarity=0.407  Sum_probs=36.2

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCC
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDF  103 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~  103 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   +++||+|++
T Consensus         7 h~~~k~~~C~~C~k~---F~~~~~L~~H~~~H~---~~k~~~C~~   45 (45)
T 2epu_A            7 GTGQKPFECTHCGKS---FRAKGNLVTHQRIHT---GEKSGPSSG   45 (45)
T ss_dssp             CCSCCSEEETTTTEE---ESSHHHHHHHHTTTS---SCCCCCSCC
T ss_pred             CCCCcCccCCCCCCc---cCChHHHHHHHHHhC---CCCCCCCCC
Confidence            788999999999999   899999999999999   889999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.2e-08  Score=63.25  Aligned_cols=40  Identities=18%  Similarity=0.192  Sum_probs=37.3

Q ss_pred             ccCCCCcccc--ccccccccCCCHHHHHHhHhhhccCCCcCcccCCCC
Q psy2238          59 QSVQRLPQCG--HCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFC  104 (311)
Q Consensus        59 h~~~k~~~C~--~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C  104 (311)
                      |+++++|.|.  +|++.   |.....|..|+++|+   +++||+|.+|
T Consensus         7 H~~~k~~~C~~~~C~k~---f~~~~~L~~H~~~H~---~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWR---FSRSDELSRHRRSHS---GVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCE---ESSHHHHHHHHTTSC---CCCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCc---cCCHHHHHHHHHHhC---CCCCCCCCCC
Confidence            7889999998  89999   899999999999999   8899999987

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.59  E-value=1.7e-08  Score=64.07  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=29.9

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHH-HhcCCCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTR-SHKFGRQQ  239 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~  239 (311)
                      +|++++||.|.+|++.|.+..+|.+|++ +|+++.+.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            5889999999999999999999999999 99887654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.2e-08  Score=61.01  Aligned_cols=37  Identities=24%  Similarity=0.427  Sum_probs=34.8

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccC
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAIC  101 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C  101 (311)
                      |+++++|.|++|++.   |.....|..|+++|+   +++||+|
T Consensus         5 h~~~k~~~C~~C~k~---f~~~~~L~~H~~~H~---~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKS---FRQKGSLTLHERIHT---GSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCE---ESSHHHHHHHGGGCC---CCSCSCC
T ss_pred             cCCCCCeECCCCCCC---cCCHHHHHHHHHHhC---CCCCcCC
Confidence            788999999999999   899999999999999   8899988

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=3.1e-08  Score=58.46  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .|.+++||.|+.|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4678899999999999999999999999998753

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=4.6e-10  Score=81.46  Aligned_cols=53  Identities=11%  Similarity=0.131  Sum_probs=34.3

Q ss_pred             cCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcC
Q psy2238         168 LESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       168 ~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      ++++||.           |++|++.| ....|..|+++|++++||+|..|.    ....|..|+++|.+
T Consensus        21 ~~~kpy~-----------C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           21 LQNSTYQ-----------CKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCSCEE-----------CSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             CCCCCCc-----------CCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            6666666           77777777 334777777777777777775543    44455556666654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.53  E-value=4.1e-08  Score=58.46  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             hhcCCCCccCCC--CCccccCchHHHHHHHHhcCCC
Q psy2238         204 KYEKNKPIPCPK--CGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       204 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .|++++||.|.+  |++.|...+.|.+|+++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            478899999984  9999999999999999998763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.50  E-value=5.4e-09  Score=60.29  Aligned_cols=31  Identities=16%  Similarity=0.247  Sum_probs=20.9

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCCCCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFGRQQ  239 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  239 (311)
                      +||+|++|++.|...+.|.+|+++|++++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4666777777777777777776666666654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.48  E-value=2.2e-08  Score=72.44  Aligned_cols=44  Identities=16%  Similarity=0.115  Sum_probs=40.1

Q ss_pred             HHHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCCCCCCCC
Q psy2238         199 RRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQLNG  242 (311)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~~  242 (311)
                      +.|.++|++++||.|++|++.|.+...|..|+++|++++||.+.
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~   57 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK   57 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccc
Confidence            34556799999999999999999999999999999999999985

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.48  E-value=3.8e-07  Score=62.00  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCCCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      .+.+++||+|.+|+|.|.+.+.|.+|+++|+++..
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            46778999999999999999999999999998754

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.47  E-value=8.9e-09  Score=69.28  Aligned_cols=44  Identities=11%  Similarity=0.217  Sum_probs=25.8

Q ss_pred             ccccccCCCCccccCcCccccccccchhhc-ccCCCCccccccccc
Q psy2238          29 MSVAEFPCNANMECDKCKRKQKNRAFCYFC-QSVQRLPQCGHCGKI   73 (311)
Q Consensus        29 ~~~~~~~~~~~~~C~~C~~~f~~~~~c~~~-h~~~k~~~C~~C~k~   73 (311)
                      .++++|.+++||.|+.|++.|..... +.. |+++++|.|.+|++.
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~-l~~~H~~~k~~~C~~C~k~   48 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEA-NQLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHH-HHHEETTTTEEBCSSSCCB
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHH-hHhhcCCCCCEECCCCCCc
Confidence            45566666666666666666663322 212 666666666666666

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.43  E-value=1.6e-07  Score=52.06  Aligned_cols=28  Identities=21%  Similarity=0.361  Sum_probs=24.9

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +||.|++|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999999865

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=1.3e-07  Score=52.79  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=25.7

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      ++||.|+.|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            47899999999999999999999999865

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.42  E-value=1.1e-07  Score=52.85  Aligned_cols=28  Identities=18%  Similarity=0.387  Sum_probs=24.4

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +||.|+.|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5789999999999999999999988865

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.42  E-value=1.3e-07  Score=56.90  Aligned_cols=38  Identities=13%  Similarity=0.177  Sum_probs=33.7

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCC
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICD  102 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~  102 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   +++||.+.
T Consensus         1 h~~~k~~~C~~C~k~---f~~~~~L~~H~~~H~---~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKRE---FRSAQALGGHMNVHR---RDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCE---ESSHHHHHHHHHTTC---CSCTTTTC
T ss_pred             CCCCCceECCCCCcc---cCCHHHHHHHHHHcC---CCccceec
Confidence            567899999999999   899999999999999   88898763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.42  E-value=1.9e-07  Score=52.08  Aligned_cols=30  Identities=17%  Similarity=0.480  Sum_probs=25.9

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCCCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      +||.|+.|++.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            579999999999999999999999987653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.40  E-value=1.5e-07  Score=51.49  Aligned_cols=27  Identities=22%  Similarity=0.530  Sum_probs=24.4

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhc
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      ++||.|+.|++.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999885

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.39  E-value=2.5e-07  Score=53.44  Aligned_cols=31  Identities=16%  Similarity=0.207  Sum_probs=28.8

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCCCcc
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESENYK  174 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~  174 (311)
                      +||.|++|+ .|...+.|..|+++|  ++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H--~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLH--ELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHH--TTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHh--CCCCCCC
Confidence            589999999 899999999999999  9999986

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.38  E-value=2.3e-07  Score=52.94  Aligned_cols=30  Identities=23%  Similarity=0.462  Sum_probs=26.3

Q ss_pred             CCCccCC--CCCccccCchHHHHHHHHhcCCC
Q psy2238         208 NKPIPCP--KCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       208 ~k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      ++||.|+  .|++.|...+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4789998  89999999999999999998753

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.38  E-value=1.9e-07  Score=51.61  Aligned_cols=28  Identities=25%  Similarity=0.431  Sum_probs=24.7

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +||.|+.|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            5889999999999999999999998865

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.36  E-value=1.9e-07  Score=51.74  Aligned_cols=29  Identities=24%  Similarity=0.524  Sum_probs=24.8

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      +||.|++|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            57899999999999999999999988653

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.36  E-value=3.2e-07  Score=62.30  Aligned_cols=42  Identities=21%  Similarity=0.141  Sum_probs=36.3

Q ss_pred             hhcccCCCCccccc--cccccccCCCHHHHHHhH-hhhccCCCcCcccCCC
Q psy2238          56 YFCQSVQRLPQCGH--CGKIKCMLKTGDCVIKHA-GVFSTGMGMVGAICDF  103 (311)
Q Consensus        56 ~~~h~~~k~~~C~~--C~k~~~~f~~~~~L~~H~-~~h~~~~~~~~~~C~~  103 (311)
                      +...+++|||+|.+  |++.   |....+|..|+ ++|+   +++||.|..
T Consensus        19 ~~~~sGEKPYkC~~~~CgKa---Fsr~s~L~~H~rriHT---gEKP~~~~~   63 (73)
T 1x3c_A           19 PTRYSPYRPYRCVHQGCFAA---FTIQQNLILHYQAVHK---SDLPAFSAE   63 (73)
T ss_dssp             SSSSCSSCSCBCCSTTCCCB---CSSHHHHHHHHHHHSS---SCCCCCCCS
T ss_pred             cccccCCCCeECCCCCcChh---HcCHHHHHHHhhhhCC---CCCCccccc
Confidence            33477999999975  9999   99999999998 6899   889999864

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.35  E-value=1.6e-07  Score=51.79  Aligned_cols=28  Identities=25%  Similarity=0.455  Sum_probs=24.3

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhcC
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      ++||.|++|++.|...+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4789999999999999999999988863

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.35  E-value=1.1e-07  Score=52.23  Aligned_cols=27  Identities=22%  Similarity=0.511  Sum_probs=23.6

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhc
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      ++||+|+.|++.|...+.|.+|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999998874

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.35  E-value=2.3e-07  Score=52.56  Aligned_cols=29  Identities=24%  Similarity=0.581  Sum_probs=24.5

Q ss_pred             CCccCC--CCCccccCchHHHHHHHHhcCCC
Q psy2238         209 KPIPCP--KCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       209 k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      +||.|+  .|++.|...+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            578897  89999999999999999888653

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.34  E-value=1.2e-07  Score=56.22  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             hcCCCCccCCCCCccccCchHHHHHH
Q psy2238         205 YEKNKPIPCPKCGFETSQTKDLSMST  230 (311)
Q Consensus       205 h~~~k~~~C~~C~k~f~~~~~L~~H~  230 (311)
                      +.+++||+|+.|+|+|+++++|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            45778888888888888888888887

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.66  E-value=7.1e-08  Score=53.74  Aligned_cols=28  Identities=32%  Similarity=0.502  Sum_probs=23.7

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +||.|+.|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5788888988898888888888888765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.63  E-value=8.7e-08  Score=53.66  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      ++||.|+.|++.|...+.|..|+++|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            36899999999999999999999988765

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.27  E-value=3.2e-07  Score=49.99  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             CccCCCCCccccCchHHHHHHHHhcC
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      ||+|++|++.|...+.|.+|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            57888888888888888888888875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=2e-07  Score=65.22  Aligned_cols=55  Identities=13%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhcCCC
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNK  209 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k  209 (311)
                      +.+|+.|++|+ .| ..+.|..|+ .|  .+++|+.           |+.|++.|....|..|+++|.+++
T Consensus        14 ~~r~~~C~~C~~~~-~~~~L~~H~-~~--c~~~~~~-----------C~~C~~~~~~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A           14 PLRLAVCQHCDLEL-SILKLKEHE-DY--CGARTEL-----------CGNCGRNVLVKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCEECSSSCCEE-CHHHHHHHH-HH--HHHCEEE-----------CSSSCCEEETTGGGTHHHHBTTBS
T ss_pred             CCcccCCcccChHh-hHHHHHHHH-hH--cCCCceE-----------cccCCCcCcHHHHHHHHHHccCCc
Confidence            45788899999 67 488999999 77  8999999           889999998789999999888763

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.54  E-value=1.5e-07  Score=50.99  Aligned_cols=26  Identities=35%  Similarity=0.671  Sum_probs=22.3

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhc
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      +||.|+.|++.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57889999999999999999988874

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.21  E-value=3.9e-07  Score=53.82  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=29.8

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKN  208 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~  208 (311)
                      |+++|  ++++||+           |++|++.| ....|..|+++|+++
T Consensus         2 H~~~h--~~~k~~~-----------C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGS--TGIKPFQ-----------CPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTT--CCSSSBC-----------CTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcC--CCCCCcc-----------CCCCCcccCcHHHHHHHHHHhccC
Confidence            56777  8899999           99999999 555999999999874

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.20  E-value=5.6e-07  Score=50.24  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=23.3

Q ss_pred             CCccCCCCCccccCchHHHHH-HHHhcCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMS-TRSHKFG  236 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H-~~~H~~~  236 (311)
                      +||.|+.|++.|.+.+.|..| +++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            578888888888888888888 6788765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.20  E-value=9e-07  Score=51.46  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVG   98 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~   98 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   +++|
T Consensus         2 H~~~k~~~C~~C~k~---f~~~~~l~~H~~~H~---~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSA---FTTKANCARHLKVHT---DTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCE---ESSHHHHHHHHGGGT---SCCC
T ss_pred             CCCCcCeeCCCCCcc---cCCHHHHHHHHHHcC---CCCC
Confidence            678899999999999   899999999999998   6554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.19  E-value=8.5e-07  Score=51.48  Aligned_cols=34  Identities=18%  Similarity=0.113  Sum_probs=30.0

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVG   98 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~   98 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   +++|
T Consensus         2 h~~~k~~~C~~C~k~---f~~~~~L~~H~~~h~---~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKK---FVSSIRLRSHIREVH---GAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCE---ESSHHHHHHHHHHTS---CTTC
T ss_pred             CCCCCCeECCCCcch---hCCHHHHHHHHHHHc---CCCC
Confidence            678899999999999   899999999999998   6554

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=9.9e-07  Score=52.00  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVG   98 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~   98 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+   +++|
T Consensus         4 h~~~k~~~C~~C~k~---f~~~~~l~~H~~~h~---~~kp   37 (37)
T 2elo_A            4 GSSGRSYSCPVCEKS---FSEDRLIKSHIKTNH---PEVS   37 (37)
T ss_dssp             CCCCCCCEETTTTEE---CSSHHHHHHHHHHHC---SSCC
T ss_pred             CCCCCCcCCCCCCCc---cCCHHHHHHHHHHHc---CCCC
Confidence            778899999999999   899999999999998   6554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.16  E-value=2e-07  Score=53.41  Aligned_cols=30  Identities=13%  Similarity=0.142  Sum_probs=25.9

Q ss_pred             CCcccCCCchhcc-hHHHHHHhhhhcCCCCc
Q psy2238         182 GQYSCLRCKICFC-EDHARRKGFKYEKNKPI  211 (311)
Q Consensus       182 ~~~~C~~C~k~F~-~~~l~~H~~~h~~~k~~  211 (311)
                      +||.|++|++.|. ...|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            3566999999994 45899999999999987

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.09  E-value=1.8e-06  Score=51.24  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             ccCCCCcccc--ccccccccCCCHHHHHHhHhhhccCCCcCcc
Q psy2238          59 QSVQRLPQCG--HCGKIKCMLKTGDCVIKHAGVFSTGMGMVGA   99 (311)
Q Consensus        59 h~~~k~~~C~--~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~   99 (311)
                      |+++++|.|.  .|++.   |.....|..|+++|+   +++||
T Consensus         1 H~~~k~~~C~~~~C~k~---f~~~~~L~~H~~~H~---~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQR---FTNEDHLAVHKHKHE---MTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCE---ESSHHHHHHHHHHHH---TTTTT
T ss_pred             CCCCcceECCCCCCCcc---cCCHHHHHHHHHHhC---CCCCC
Confidence            5788999999  59999   899999999999999   77776

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=2.2e-06  Score=51.38  Aligned_cols=30  Identities=20%  Similarity=0.187  Sum_probs=27.6

Q ss_pred             ccCCCCccccc--cccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGH--CGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~--C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      +++++||+|++  |++.   |..+..|..|+++|+
T Consensus         4 ~~gekp~~C~~~~C~k~---F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYS---TPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SSCCCCEECSSSSCCCE---ESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCc---cCCHHHHHHHHHhcC
Confidence            56789999986  9999   899999999999998

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.02  E-value=1.8e-06  Score=47.64  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=23.0

Q ss_pred             CCccCC--CCCccccCchHHHHHHHHhcC
Q psy2238         209 KPIPCP--KCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       209 k~~~C~--~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      +||.|+  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            578898  999999999999999988863

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=4.5e-06  Score=48.65  Aligned_cols=30  Identities=23%  Similarity=0.410  Sum_probs=28.1

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+
T Consensus         4 h~~~~~~~C~~C~k~---f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            4 GSSGKTHLCDMCGKK---FKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCSSCBCTTTCCB---CSSHHHHHHHHHHHS
T ss_pred             CCCCCCeecCcCCCC---cCchHHHHHHHHHhc
Confidence            678899999999999   999999999999998

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.01  E-value=3.3e-06  Score=49.26  Aligned_cols=30  Identities=13%  Similarity=0.142  Sum_probs=28.0

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+
T Consensus         4 h~~~k~~~C~~C~k~---f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            4 GSSGKPYKCPQCSYA---SAIKANLNVHLRKHT   33 (36)
T ss_dssp             SCCCCSEECSSSSCE---ESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCcc---cCCHHHHHHHHHHcc
Confidence            678899999999999   899999999999998

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.00  E-value=3e-06  Score=49.56  Aligned_cols=30  Identities=23%  Similarity=0.193  Sum_probs=27.9

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+
T Consensus         4 h~~~k~~~C~~C~k~---f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            4 GSSGLLYDCHICERK---FKNELDRDRHMLVHG   33 (36)
T ss_dssp             SCCCCCEECSSSCCE---ESSHHHHHHHHTTTS
T ss_pred             CCCCCCeECCCCCCc---cCCHHHHHHHHHHhc
Confidence            678899999999999   899999999999998

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=3.5e-06  Score=49.22  Aligned_cols=30  Identities=17%  Similarity=0.232  Sum_probs=27.9

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |+++++|.|.+|++.   |.....|..|+++|+
T Consensus         4 h~~~k~~~C~~C~k~---f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            4 GSSGKPFKCSLCEYA---TRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SCCCCSEECSSSSCE---ESCHHHHHHHHHHSS
T ss_pred             CCCCCCccCCCCCch---hCCHHHHHHHHHHhc
Confidence            678899999999999   899999999999998

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.93  E-value=5e-06  Score=45.98  Aligned_cols=29  Identities=17%  Similarity=0.445  Sum_probs=25.4

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCCC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLESE  171 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k  171 (311)
                      ++||.|+.|+ .|.....|..|+++|  ++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h--~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETH--DTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTT--CCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHh--ccCC
Confidence            4789999999 899999999999998  6653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.92  E-value=6.7e-06  Score=45.14  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=24.3

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLES  170 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~  170 (311)
                      +||.|++|+ .|...+.|..|+++|  +++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h--~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSH--TNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHH--SCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHh--cCC
Confidence            479999999 899999999999998  665

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=4.4e-06  Score=49.13  Aligned_cols=30  Identities=17%  Similarity=0.218  Sum_probs=27.5

Q ss_pred             ccCCCCccccccccccccCCCH-HHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTG-DCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~-~~L~~H~~~h~   91 (311)
                      |+++++|.|.+|++.   |... ..|..|+++|+
T Consensus         4 h~~~k~~~C~~C~k~---f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            4 GSSGRAMKCPYCDFY---FMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CCCCCCEECSSSSCE---ECSSCHHHHHHHHHHH
T ss_pred             CCCCCCeECCCCChh---hccCHHHHHHHHHhcC
Confidence            678899999999999   8898 99999999998

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=5.7e-06  Score=48.27  Aligned_cols=30  Identities=20%  Similarity=0.421  Sum_probs=27.6

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |+.+++|.|++|++.   |.....|..|+++|+
T Consensus         4 ~~~~k~~~C~~C~k~---f~~~~~l~~H~~~H~   33 (36)
T 2els_A            4 GSSGKIFTCEYCNKV---FKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TSCCCCEECTTTCCE---ESSHHHHHHHHHHHC
T ss_pred             CCCCCCEECCCCCce---eCCHHHHHHHHHHhC
Confidence            567899999999999   899999999999998

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.92  E-value=7.7e-06  Score=45.17  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=25.2

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESEN  172 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~  172 (311)
                      ++|.|++|+ .|...+.|..|+++|  +++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h--~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTK--HSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH--TSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHH--ccCCC
Confidence            478999999 899999999999998  66643

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.89  E-value=6.3e-06  Score=48.70  Aligned_cols=26  Identities=15%  Similarity=0.188  Sum_probs=23.4

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhH
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHA   87 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~   87 (311)
                      +.+++||.|.+|++.   |...++|.+|+
T Consensus         3 ~~gekp~~C~~CgK~---F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIA---FSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEE---CSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCc---cCCHhHccCcC
Confidence            457899999999999   99999999997

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.89  E-value=5.1e-06  Score=45.72  Aligned_cols=28  Identities=18%  Similarity=0.250  Sum_probs=24.6

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESE  171 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k  171 (311)
                      +||.|+.|+ .|...+.|..|+++|  ++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H--~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLH--ENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGG--GSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHh--cCCC
Confidence            579999999 899999999999998  6653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.87  E-value=8.3e-06  Score=44.65  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=24.3

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLES  170 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~  170 (311)
                      +||.|+.|+ .|...+.|..|+++|  +++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h--~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIH--IAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHH--HSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHh--ccC
Confidence            579999999 899999999999998  665

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=7.8e-06  Score=44.80  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=24.7

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESE  171 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k  171 (311)
                      +||.|++|+ .|.....|..|+++|  ++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H--~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIH--SGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHH--HTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHh--cCCC
Confidence            479999999 899999999999998  6653

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.83  E-value=7.2e-06  Score=51.60  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=27.9

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHh-hhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAG-VFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~-~h~   91 (311)
                      |+++++|.|.+|++.   |.....|..|++ +|+
T Consensus         2 Ht~~kp~~C~~C~k~---F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            2 EDRDKPYACDICGKR---YKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             CTTTSCEECTTTCCE---ESSHHHHHHHHHHSSC
T ss_pred             CCCCcCEECCCcCcc---cCCHHHHHHHhhhhcC
Confidence            678999999999999   899999999999 888

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.82  E-value=1.2e-05  Score=45.37  Aligned_cols=29  Identities=31%  Similarity=0.589  Sum_probs=25.3

Q ss_pred             CceeecC--CCC-CCCChHHHHHHHHHhcccCCC
Q psy2238         141 GRVYKCC--FCE-GFLCEDDQFEHQASCQVLESE  171 (311)
Q Consensus       141 ~~~~~C~--~C~-~f~~~~~L~~H~~~h~~~~~k  171 (311)
                      ++||.|+  .|+ .|...+.|..|+++|  ++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H--~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH--QEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGG--TCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHc--cCCC
Confidence            4789999  899 899999999999998  7653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.79  E-value=8.5e-06  Score=48.01  Aligned_cols=30  Identities=27%  Similarity=0.403  Sum_probs=27.2

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHh-Hhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKH-AGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H-~~~h~   91 (311)
                      |++++||+|.+|++.   |.....|..| +++|+
T Consensus         4 H~~~k~~~C~~C~k~---f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            4 GSSGHLYYCSQCHYS---SITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSSCEEECSSSSCE---EECHHHHHHHHHHHTC
T ss_pred             cCCCcCeECCCCCcc---cCCHHHHHHHHHHHcc
Confidence            778899999999999   8999999999 88887

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.97  E-value=3.4e-06  Score=46.59  Aligned_cols=27  Identities=15%  Similarity=0.382  Sum_probs=24.1

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLES  170 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~  170 (311)
                      +||+|++|+ .|...+.|..|+++|  +++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H--~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQH--TGE   28 (29)
Confidence            579999999 899999999999998  665

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.77  E-value=1.4e-05  Score=46.96  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=27.6

Q ss_pred             ccCCCCccccc--cccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGH--CGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~--C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |+++++|.|.+  |++.   |.....|..|+++|+
T Consensus         3 ~~~~k~~~C~~~~C~k~---f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKV---YGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSSCCCEECCSTTCCCE---ESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCc---cCCHHHHHHHHHhcC
Confidence            67889999984  9999   899999999999998

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.77  E-value=1.1e-05  Score=43.62  Aligned_cols=27  Identities=15%  Similarity=0.276  Sum_probs=24.3

Q ss_pred             CCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          62 QRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        62 ~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      ++||.|.+|++.   |.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~---f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQR---SRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCE---ESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChh---hCCHHHHHHHHHHcc
Confidence            478999999999   899999999999874

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.75  E-value=9.3e-06  Score=44.09  Aligned_cols=27  Identities=15%  Similarity=0.077  Sum_probs=24.3

Q ss_pred             CCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          62 QRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        62 ~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      ++||.|.+|++.   |.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~---f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAG---CPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEE---ESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcc---cCCHHHHHHHHHhcC
Confidence            478999999999   899999999999874

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.94  E-value=3.9e-06  Score=46.56  Aligned_cols=28  Identities=18%  Similarity=0.275  Sum_probs=24.7

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLES  170 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~  170 (311)
                      ++||.|+.|+ .|...+.|..|+++|  +++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h--~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIH--TGE   29 (30)
Confidence            3689999999 899999999999998  654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.74  E-value=2.6e-05  Score=52.83  Aligned_cols=40  Identities=15%  Similarity=0.364  Sum_probs=32.4

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE  105 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~  105 (311)
                      +..++||.|.+|++.   |.....|..|+++|+   ++ ...+.+++
T Consensus         8 ~~~ekpy~C~~CgK~---F~~~s~L~~H~r~Ht---g~-~~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKV---FTDANRLRQHEAQHG---VT-SLQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCC---CSCHHHHHHHHHHHT---TT-SCCCCSCC
T ss_pred             CCCccCcCCCCCCCc---cCCHHHHHhhhhhhC---CC-cccccccc
Confidence            667899999999999   999999999999999   43 33444443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.67  E-value=2.2e-05  Score=43.36  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=22.7

Q ss_pred             CCcccCCCchhc-chHHHHHH-hhhhcCCC
Q psy2238         182 GQYSCLRCKICF-CEDHARRK-GFKYEKNK  209 (311)
Q Consensus       182 ~~~~C~~C~k~F-~~~~l~~H-~~~h~~~k  209 (311)
                      +||.|+.|++.| ....|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            356799999999 55699999 78888764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.65  E-value=2.1e-05  Score=42.77  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=24.7

Q ss_pred             CCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          62 QRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        62 ~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      +++|.|.+|++.   |.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~---f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKR---FSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCE---ESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcc---cCCHHHHHHHHHhcC
Confidence            478999999999   899999999999886

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.58  E-value=4.6e-05  Score=42.55  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=24.3

Q ss_pred             CCcccc--ccccccccCCCHHHHHHhHhhhc
Q psy2238          63 RLPQCG--HCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        63 k~~~C~--~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      +||.|.  +|++.   |.....|..|+++|+
T Consensus         1 kp~~C~~~~C~k~---f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKR---FTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCB---CSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcc---cCCHhHHHHHHHHhc
Confidence            589998  99999   999999999999998

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.57  E-value=4.4e-05  Score=41.00  Aligned_cols=25  Identities=20%  Similarity=0.491  Sum_probs=22.9

Q ss_pred             CccccccccccccCCCHHHHHHhHhhhc
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      ||.|.+|++.   |.....|..|+++|+
T Consensus         1 ~~~C~~C~k~---f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERS---FVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCB---CSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCc---CCCHHHHHHHHHHcC
Confidence            6899999999   999999999999997

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.67  E-value=1.2e-05  Score=42.99  Aligned_cols=26  Identities=19%  Similarity=0.376  Sum_probs=23.0

Q ss_pred             CCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          63 RLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        63 k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      +||.|++|++.   |.....|..|+++|+
T Consensus         1 kp~~C~~C~k~---f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKR---FVQSSQLANHIRHHD   26 (26)
Confidence            57999999999   899999999998874

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.37  E-value=3.9e-05  Score=47.84  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=26.6

Q ss_pred             ccCCCCcccc--ccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCG--HCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~--~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |++++||.|.  +|++.   |.....|..|+++|+
T Consensus        13 H~~~k~~~C~~~~C~k~---F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKT---FKRRYNIRSHIQTHL   44 (47)
T ss_dssp             EETTTEEECCCTTCCCE---ECSSSSHHHHHHHHT
T ss_pred             cCCCCCeECCCCCCCCc---cCCHHHHHHHHHHcc
Confidence            8888999995  79999   888899999999998

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.35  E-value=8.4e-05  Score=40.45  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=22.2

Q ss_pred             ceeecC--CCC-CCCChHHHHHHHHHh
Q psy2238         142 RVYKCC--FCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       142 ~~~~C~--~C~-~f~~~~~L~~H~~~h  165 (311)
                      ++|.|+  .|+ .|...+.|..|+++|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            478999  999 899999999999998

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.00083  Score=44.94  Aligned_cols=48  Identities=15%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             cCCCchhc-chHHHHHHh-hhhcCCC------CccCC--CCCccccCchHHHHHHHHh
Q psy2238         186 CLRCKICF-CEDHARRKG-FKYEKNK------PIPCP--KCGFETSQTKDLSMSTRSH  233 (311)
Q Consensus       186 C~~C~k~F-~~~~l~~H~-~~h~~~k------~~~C~--~C~k~f~~~~~L~~H~~~H  233 (311)
                      -..|++.| +...|..|+ ..|.+.+      +|.|.  .|++.+.....|..|+++.
T Consensus         6 W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            6 WKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            46799999 455899998 4676655      89995  9999999999999999875

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.48  E-value=0.00051  Score=52.11  Aligned_cols=32  Identities=16%  Similarity=0.100  Sum_probs=28.1

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHH
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      +...|+|++||.|..|++.|.+.+.|..|+++
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            44568899999999999999999999999764

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.0057  Score=40.77  Aligned_cols=49  Identities=10%  Similarity=0.004  Sum_probs=37.0

Q ss_pred             CCCC-CCCChHHHHHHH-HHhcccCCC------CccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhc
Q psy2238         147 CFCE-GFLCEDDQFEHQ-ASCQVLESE------NYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYE  206 (311)
Q Consensus       147 ~~C~-~f~~~~~L~~H~-~~h~~~~~k------~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~  206 (311)
                      ..|+ .|.+...|..|+ +.|  .+.+      +|.|.         ...|++.+ ....|+.|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~H--v~~~~~~~~~~~~C~---------W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDH--VSQDFKHPMEPLACN---------WEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHS--CCCCCCCSSCCEECC---------CSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhc--cCcccCCCCCCCEee---------CCCCcCCCCChHHHHhhccccC
Confidence            3588 899999999998 467  5444      67754         45898888 5559999998754

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.94  E-value=0.006  Score=49.06  Aligned_cols=78  Identities=18%  Similarity=0.279  Sum_probs=54.1

Q ss_pred             CCCCCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhcCCCCccCCCCCccccCchHHH
Q psy2238         148 FCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLS  227 (311)
Q Consensus       148 ~C~~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~  227 (311)
                      -|+.......|..|+...   .-++..           |+.|+..+....|..|....-..++-.|+.|+..|.. ..|.
T Consensus        89 GC~~~~~~~~l~~H~~~C---~~~~v~-----------C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~  153 (170)
T 3hcs_A           89 GCLHKMELRHLEDHQAHC---EFALMD-----------CPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAF-EDKE  153 (170)
T ss_dssp             TCCCEEEGGGHHHHHTTC---TTSEEE-----------CTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHH
T ss_pred             CCCceecHhHHHHHHhcC---CceeeE-----------CCCCChHHHHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHH
Confidence            455333455677776442   124444           8899999988889999887778888999999988765 5778


Q ss_pred             HHHHHhcCCCCCC
Q psy2238         228 MSTRSHKFGRQQL  240 (311)
Q Consensus       228 ~H~~~H~~~~~~~  240 (311)
                      .|+.++.++.++.
T Consensus       154 ~H~~~~~~~~~~~  166 (170)
T 3hcs_A          154 IHDQNCPLALEHH  166 (170)
T ss_dssp             HHHTTCCC-----
T ss_pred             hHHHhCcChhhhh
Confidence            9999998876653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.88  E-value=0.0014  Score=50.28  Aligned_cols=81  Identities=12%  Similarity=0.155  Sum_probs=51.5

Q ss_pred             ceeecCCCC-CCCChHHHHHHH--HHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhcCCCCccCCCCCc
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQ--ASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGF  218 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~--~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~~C~k  218 (311)
                      +++.|.+|. .|.+.+.+..|.  +.|. ...+.+.+. ++...+    .=++.|...   .+...+.+.+.|.|.+|.+
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~-~~v~~~~~~-~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~C~~C~~  101 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHA-NKVRRYMAI-NQGEDS----VPAKKFKAA---PAEISDGEDRSKCCPVCNM  101 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHH-HHHHHHHHH-TTCCCC----CSCCCCSCC---SSCCSSCCCTTTEETTTTE
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHH-HHHHHHhcc-cCcccC----CCCCccCCC---ccccccCCCCCeEcCCCCC
Confidence            578899999 899999999998  6661 122444421 111100    002222111   1223456678899999999


Q ss_pred             cccCchHHHHHHH
Q psy2238         219 ETSQTKDLSMSTR  231 (311)
Q Consensus       219 ~f~~~~~L~~H~~  231 (311)
                      .|.+...|..|..
T Consensus       102 ~f~s~~~~~~H~~  114 (127)
T 1zu1_A          102 TFSSPVVAESHYI  114 (127)
T ss_dssp             ECSSHHHHHHHHT
T ss_pred             EeCCHHHHHHHHC
Confidence            9999999999963

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.49  E-value=0.013  Score=35.88  Aligned_cols=29  Identities=17%  Similarity=0.127  Sum_probs=24.9

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .+|.|+.|++.|.....|+.||+..-++.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcch
Confidence            67999999999999999999999665544

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.68  E-value=0.02  Score=43.33  Aligned_cols=30  Identities=13%  Similarity=0.173  Sum_probs=27.2

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |+++++|.|..|++.   |.+...|..|+++..
T Consensus        45 ~tGekpfyC~~C~K~---F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           45 LPGGGLHRCLACARY---FIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SGGGGCSEETTTTEE---CSSHHHHHHHTTCHH
T ss_pred             CCCCcceEcccCcch---hCCHHHHHHHHhhhh
Confidence            889999999999999   999999999988543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.23  E-value=0.083  Score=32.30  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.3

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      ..+|.|+.|+ .|.....|+.||+.-
T Consensus        10 ~~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CCceeCCcccccccchHHHHhhhhhc
Confidence            3789999999 899999999999853

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.44  E-value=0.15  Score=29.07  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             CccCCCCCccccCchHHHHHHH-Hhc
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTR-SHK  234 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~-~H~  234 (311)
                      .|.||+|.+.|.+...|..|.. .|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            4889999999999999999964 454

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=90.67  E-value=0.76  Score=34.78  Aligned_cols=80  Identities=14%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             CCCccccccccccccCCCHHHHHHhHh--hhccCCCc-CcccCCCChhhHHhHHHHHHhhcCcCC--CCccccccccccc
Q psy2238          62 QRLPQCGHCGKIKCMLKTGDCVIKHAG--VFSTGMGM-VGAICDFCEAWICHGRKCLQTHACTCP--LQDAVCLECERGV  136 (311)
Q Consensus        62 ~k~~~C~~C~k~~~~f~~~~~L~~H~~--~h~~~~~~-~~~~C~~C~~f~~~~~~H~~~H~~~~~--~~~~~C~~C~~~f  136 (311)
                      .+++.|.+|...   |.+...+..|..  .|.   .. +.+               +..+..+.+  ...+.-.  +...
T Consensus        30 ~~~~~C~~C~v~---~~S~s~~~~H~~gkkH~---~~v~~~---------------~~~~~~~~~~~~~~~~~~--~~~~   86 (127)
T 1zu1_A           30 FSDTQCKVCSAV---LISESQKLAHYQSRKHA---NKVRRY---------------MAINQGEDSVPAKKFKAA--PAEI   86 (127)
T ss_dssp             BCSSEETTTTEE---CCSHHHHHHHHHCHHHH---HHHHHH---------------HHHTTCCCCCSCCCCSCC--SSCC
T ss_pred             CCCCcCcCCCCE---eCCHHHHHHHHCcHHHH---HHHHHH---------------hcccCcccCCCCCccCCC--cccc
Confidence            356889999998   889899999984  554   10 111               111111110  0001000  0011


Q ss_pred             ccCCCceeecCCCC-CCCChHHHHHHHHH
Q psy2238         137 WDHGGRVYKCCFCE-GFLCEDDQFEHQAS  164 (311)
Q Consensus       137 ~~~~~~~~~C~~C~-~f~~~~~L~~H~~~  164 (311)
                      .......|-|.+|. .|.....|..|+..
T Consensus        87 ~~~~~~~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           87 SDGEDRSKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             SSCCCTTTEETTTTEECSSHHHHHHHHTS
T ss_pred             ccCCCCCeEcCCCCCEeCCHHHHHHHHCC
Confidence            22356788999999 89999999999753

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=90.27  E-value=0.15  Score=40.73  Aligned_cols=56  Identities=11%  Similarity=0.112  Sum_probs=40.8

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhcCCCCc
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPI  211 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k~~  211 (311)
                      .+..|+.|+ .+ ....|..|+...  -..++..           |+.|+..|....|..|..++.|+.++
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~--C~~r~~~-----------C~~C~~~~~~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKD--CPRRQVS-----------CDNCAASMAFEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHT--CTTCEEE-----------CTTTCCEEEGGGHHHHHTTCCC----
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhh--CCCCCeE-----------CCCCCCccCHHHHHhHHHhCcChhhh
Confidence            566788888 55 566799998653  4455556           99999999888999999999888664

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=87.22  E-value=0.26  Score=35.80  Aligned_cols=26  Identities=19%  Similarity=0.301  Sum_probs=21.2

Q ss_pred             CcccccccccccccCCCceeecCCCC
Q psy2238         125 QDAVCLECERGVWDHGGRVYKCCFCE  150 (311)
Q Consensus       125 ~~~~C~~C~~~f~~~~~~~~~C~~C~  150 (311)
                      .+|+|..||..|...-.+|-+|+.|+
T Consensus        66 ~p~~C~~CG~~F~~~~~kPsrCP~Ck   91 (105)
T 2gmg_A           66 KPAQCRKCGFVFKAEINIPSRCPKCK   91 (105)
T ss_dssp             CCCBBTTTCCBCCCCSSCCSSCSSSC
T ss_pred             ECcChhhCcCeecccCCCCCCCcCCC
Confidence            46889999999955567888899998

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=86.36  E-value=0.17  Score=34.71  Aligned_cols=39  Identities=13%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             cccCCCchhcchHHHHHHhhhhcCCCCccCCCCCccccC
Q psy2238         184 YSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQ  222 (311)
Q Consensus       184 ~~C~~C~k~F~~~~l~~H~~~h~~~k~~~C~~C~k~f~~  222 (311)
                      |.|..|+.++..+.|..|..+-.+...|.|-.|++.|..
T Consensus        11 F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A           11 FTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             EEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             EEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCC
Confidence            346666666655555555443333345666666666653

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=85.14  E-value=0.3  Score=33.45  Aligned_cols=57  Identities=16%  Similarity=0.304  Sum_probs=42.8

Q ss_pred             ceeecCCCCCCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhcchHHHHHHhhhhcCCCCc
Q psy2238         142 RVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYEKNKPI  211 (311)
Q Consensus       142 ~~~~C~~C~~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~~~l~~H~~~h~~~k~~  211 (311)
                      -.|.|..||.-..+..|..|....  .+-..|.           |..|++.|.....+.|-.-.+....|
T Consensus         9 V~F~C~~Cgd~lKK~kv~~H~~~C--r~~~~~S-----------CIDC~~~F~~~~y~~HtsCISEaeKY   65 (79)
T 1wjv_A            9 VFFTCNACGESVKKIQVEKHVSNC--RNCECLS-----------CIDCGKDFWGDDYKSHVKCISEGQKY   65 (79)
T ss_dssp             CEEEESSSCCEEETTHHHHHHHHC--TTCCEEE-----------ETTTTEEEEGGGTTTCCCCCSCTTSS
T ss_pred             eEEEcCCCCCeeecccchhHHhhC--CCCCcEE-----------ecccCCeeCCCCEeCEeeeCChhhee
Confidence            358999999999999999998776  4434566           99999999777777775544444333

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=84.57  E-value=0.38  Score=32.93  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=28.5

Q ss_pred             cCCCchhcchHHHHHHhhhhcC----------------CCCccCCCCCccccCc
Q psy2238         186 CLRCKICFCEDHARRKGFKYEK----------------NKPIPCPKCGFETSQT  223 (311)
Q Consensus       186 C~~C~k~F~~~~l~~H~~~h~~----------------~k~~~C~~C~k~f~~~  223 (311)
                      |++||.......|...|.....                +-.|+||.||..|.-+
T Consensus        11 ~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~   64 (95)
T 2k5c_A           11 CPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGK   64 (95)
T ss_dssp             CSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETT
T ss_pred             CCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcc
Confidence            8999998888888777764311                2458999999988754

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=82.94  E-value=0.5  Score=33.09  Aligned_cols=30  Identities=20%  Similarity=0.298  Sum_probs=23.1

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhcCCCCCC
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL  240 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  240 (311)
                      +.-..|-+||+.|.   .|++|+++|++-.|..
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~hgltpee   48 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTHHSMTPEE   48 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHTTCSCHHH
T ss_pred             CCceEecccchhhH---HHHHHHHHccCCCHHH
Confidence            34568999999998   5889999977765433

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=81.26  E-value=0.82  Score=29.95  Aligned_cols=29  Identities=17%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             CcccccccccccccCCCceeecCCCC-CCC
Q psy2238         125 QDAVCLECERGVWDHGGRVYKCCFCE-GFL  153 (311)
Q Consensus       125 ~~~~C~~C~~~f~~~~~~~~~C~~C~-~f~  153 (311)
                      ..|.|..|+..+.-....+.+|+.|| +..
T Consensus        20 v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RIL   49 (63)
T 3h0g_L           20 MIYLCADCGARNTIQAKEVIRCRECGHRVM   49 (63)
T ss_dssp             CCCBCSSSCCBCCCCSSSCCCCSSSCCCCC
T ss_pred             eEEECCCCCCeeecCCCCceECCCCCcEEE
Confidence            34888888887766656678888888 643

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=80.71  E-value=0.81  Score=27.82  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=17.7

Q ss_pred             cccccccccccccCCC---ceeecCCCC-C
Q psy2238         126 DAVCLECERGVWDHGG---RVYKCCFCE-G  151 (311)
Q Consensus       126 ~~~C~~C~~~f~~~~~---~~~~C~~C~-~  151 (311)
                      .|.|-.||+.|....-   --.+|++|| .
T Consensus         3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred             EEEeeccCCCccHHHHhhCCCcccCccCcE
Confidence            4889999998877532   235788888 5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.59
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.46
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.36
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.31
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.25
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.18
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.16
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.15
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.13
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.13
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.04
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.01
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.91
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.89
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.89
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.83
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.78
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.78
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.75
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.74
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.71
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.7
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.7
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.69
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.65
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.6
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.6
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.52
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.49
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.46
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.45
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.42
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.4
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.38
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.36
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.33
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.1
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.01
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.01
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.0
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.99
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.98
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.85
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.81
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.79
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.74
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.72
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.72
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.71
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.62
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.51
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.44
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.34
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.27
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.25
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.21
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.21
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.13
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.07
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.07
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.05
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.99
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.73
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.63
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.56
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.55
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.55
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.46
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.04
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.97
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.9
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.81
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.75
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.75
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.61
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.59
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.46
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.39
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.08
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	94.98
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.8
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.35
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.26
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.96
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.66
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.44
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.25
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.01
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	92.94
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.92
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	92.88
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.42
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.19
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.14
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	90.93
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.11
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.05
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.67
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	87.74
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	87.55
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	85.3
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	85.05
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	84.81
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	84.22
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	82.32
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	81.55
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	80.8
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	80.36

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.4e-16  Score=101.95  Aligned_cols=50  Identities=22%  Similarity=0.380  Sum_probs=45.9

Q ss_pred             CcccCCCchhc-chHHHHHHhhhhcCCCCccCCCCCccccCchHHHHHHHHh
Q psy2238         183 QYSCLRCKICF-CEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSH  233 (311)
Q Consensus       183 ~~~C~~C~k~F-~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H  233 (311)
                      ||+|+ ||++| ....|..|+++|++++||.|++|+++|.+.++|..||++|
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            45595 99999 5559999999999999999999999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-14  Score=92.99  Aligned_cols=51  Identities=22%  Similarity=0.372  Sum_probs=47.0

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhh
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKY  205 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h  205 (311)
                      ++||+|+ || .|.....|..|+++|  ++++||.           |++|+++| ....|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~H--t~ekpy~-----------C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMH--LGLRPYG-----------CGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHH--SCCCSEE-----------CTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhcc--ccccCCc-----------CCCcCCEecCHHHHHHHHhcC
Confidence            5899995 99 899999999999999  9999999           99999999 556999999887

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8e-14  Score=82.66  Aligned_cols=37  Identities=27%  Similarity=0.496  Sum_probs=35.2

Q ss_pred             HHhhhhcCCCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         200 RKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +|+++|+++|||+|++|+|+|.+.++|.+|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            5889999999999999999999999999999999985

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.1e-13  Score=76.33  Aligned_cols=33  Identities=27%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             hhcCCCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         204 KYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       204 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +|+++|||+|..|+++|.+.++|..|+++|+++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            589999999999999999999999999999985

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-12  Score=76.25  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=32.0

Q ss_pred             hhhcCCCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         203 FKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       203 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      ++|+|+|||+|.+|+++|+++++|..|+++|+.+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5899999999999999999999999999999865

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.3e-12  Score=76.86  Aligned_cols=35  Identities=23%  Similarity=0.469  Sum_probs=33.0

Q ss_pred             HhhhhcCCCCccCCCCCccccCchHHHHHHHHhcC
Q psy2238         201 KGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      |.++|+++|||+|++|+++|+++++|.+|+++|..
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            67899999999999999999999999999999964

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=4.6e-12  Score=72.92  Aligned_cols=32  Identities=13%  Similarity=0.211  Sum_probs=29.9

Q ss_pred             hcCCCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         205 YEKNKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       205 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      |+|+|||+|++|+|.|+++++|.+|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            68999999999999999999999999999864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.16  E-value=8.3e-12  Score=68.80  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=26.6

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      |||+|++|+++|++++.|.+|+++|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=6.1e-12  Score=68.49  Aligned_cols=28  Identities=29%  Similarity=0.496  Sum_probs=26.4

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhcC
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      ||||+|++|+|+|.++++|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-11  Score=73.26  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=25.2

Q ss_pred             CCCCccCCCCCccccCchHHHHHHH-HhcCCCCCCCC
Q psy2238         207 KNKPIPCPKCGFETSQTKDLSMSTR-SHKFGRQQLNG  242 (311)
Q Consensus       207 ~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~~  242 (311)
                      .+|||+|.+|+|+|++.++|.+|++ +|++++||.+.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            3577777777777777777777764 57777777663

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.4e-11  Score=67.72  Aligned_cols=29  Identities=24%  Similarity=0.526  Sum_probs=26.8

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      |||.|++|+|+|+++++|.+|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-11  Score=72.02  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=30.0

Q ss_pred             hhhcCCCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         203 FKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       203 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      ++|+|+|||+|++|+++|+++++|++|++.++.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            5799999999999999999999999998765543

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=1.7e-11  Score=75.76  Aligned_cols=38  Identities=18%  Similarity=0.206  Sum_probs=34.0

Q ss_pred             HHhhhhcCCCCccCCC--CCccccCchHHHHHHHHhcCCC
Q psy2238         200 RKGFKYEKNKPIPCPK--CGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       200 ~H~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .++..|++++||.|+.  |+++|+++++|.+|+++|++++
T Consensus         8 ~~h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cchhhccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            4445699999999977  9999999999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.8e-11  Score=69.70  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=34.0

Q ss_pred             CCCCccccccccccccCCCHHHHHHhHh-hhccCCCcCcccCCC
Q psy2238          61 VQRLPQCGHCGKIKCMLKTGDCVIKHAG-VFSTGMGMVGAICDF  103 (311)
Q Consensus        61 ~~k~~~C~~C~k~~~~f~~~~~L~~H~~-~h~~~~~~~~~~C~~  103 (311)
                      .+|||+|.+||+.   |....+|..|++ +|+   +++||+|++
T Consensus         2 ~~Kpy~C~~Cgk~---F~~~~~L~~H~r~~Ht---~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKG---FSRPDHLNGHIKQVHT---SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCE---ESSHHHHHHHHHHTSC---CCCCCCSSS
T ss_pred             CCCCccCCCCCCC---cCChHHhhccCcCccC---CCcCcCCcC
Confidence            5799999999999   999999999986 799   889999975

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.7e-11  Score=62.93  Aligned_cols=26  Identities=38%  Similarity=0.602  Sum_probs=23.9

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhc
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |||+|.+|||+|.++++|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.8e-10  Score=62.24  Aligned_cols=28  Identities=32%  Similarity=0.437  Sum_probs=25.7

Q ss_pred             CCccCCC--CCccccCchHHHHHHHHhcCC
Q psy2238         209 KPIPCPK--CGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 k~~~C~~--C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      |||.|+.  |+|+|+++++|++|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899977  999999999999999999975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1e-10  Score=68.99  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             HHHHHhcccCCCCccCCCCCCCCCcccCCCchhc-chHHHHHHhhhhcCC
Q psy2238         160 EHQASCQVLESENYKCKSCNKLGQYSCLRCKICF-CEDHARRKGFKYEKN  208 (311)
Q Consensus       160 ~H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F-~~~~l~~H~~~h~~~  208 (311)
                      +|+++|  ++++||+           |++|||+| ..++|.+|+++|+||
T Consensus         2 rH~~~H--t~ekpy~-----------C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQ--RERRRYK-----------CDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCC--CCSCSSB-----------CSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCccc--CCCCCEe-----------cCCCCceeeCHHHHHHhCccCCCC
Confidence            477888  9999999           99999999 555999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.2e-10  Score=62.70  Aligned_cols=28  Identities=32%  Similarity=0.469  Sum_probs=25.4

Q ss_pred             CCccCCC--CCccccCchHHHHHHHHhcCC
Q psy2238         209 KPIPCPK--CGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 k~~~C~~--C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      |||.|+.  |+|+|+++++|++|+|+|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999976  999999999999999999975

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.5e-10  Score=61.70  Aligned_cols=29  Identities=24%  Similarity=0.581  Sum_probs=25.3

Q ss_pred             CCccCC--CCCccccCchHHHHHHHHhcCCC
Q psy2238         209 KPIPCP--KCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       209 k~~~C~--~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      |||.|+  .|+|+|++.++|.+|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            689994  69999999999999999999875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.6e-09  Score=61.23  Aligned_cols=30  Identities=23%  Similarity=0.500  Sum_probs=28.8

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |++++||+|.+||+.   |.....|..|+++|+
T Consensus         2 HTgekpy~C~~Cgk~---F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           2 HSGEKPYGCVECGKA---FSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTCCCEECSSSCCE---ESSHHHHHHHHHGGG
T ss_pred             cCCCCCeeCCCCCCE---eCchHHhHhhccccC
Confidence            789999999999999   999999999999999

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.78  E-value=1.8e-09  Score=59.19  Aligned_cols=28  Identities=21%  Similarity=0.443  Sum_probs=26.2

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESE  171 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k  171 (311)
                      +||+|++|+ .|...+.|.+|+++|  +|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~H--TgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSH--TNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTT--TSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcc--cCCC
Confidence            689999999 899999999999999  9885

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-09  Score=61.98  Aligned_cols=31  Identities=26%  Similarity=0.472  Sum_probs=17.7

Q ss_pred             ccCCC--CCccccCchHHHHHHHHhcCCCCCCC
Q psy2238         211 IPCPK--CGFETSQTKDLSMSTRSHKFGRQQLN  241 (311)
Q Consensus       211 ~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~~  241 (311)
                      |.|+.  |+++|.++++|++|+++|++++||.+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeC
Confidence            44543  56666666666666666666665554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=1.8e-09  Score=58.50  Aligned_cols=27  Identities=19%  Similarity=0.401  Sum_probs=25.1

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLE  169 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~  169 (311)
                      ++||+|++|+ .|..+++|.+|+++|  +|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~H--TG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTH--TG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH--HC
T ss_pred             CcCccCCCCcCEecccccccccCCCc--cC
Confidence            5899999999 899999999999999  65

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.7e-09  Score=57.80  Aligned_cols=28  Identities=18%  Similarity=0.411  Sum_probs=26.0

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHhcccCCC
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASCQVLESE  171 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~k  171 (311)
                      +||.|++|+ .|.+++.|.+|+++|  ++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~H--tgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTH--QNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGG--GCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCcc--CCcC
Confidence            689999999 899999999999999  8875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=3.2e-09  Score=60.74  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=28.8

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |++++||+|.+|++.   |..+.+|.+|+++|+
T Consensus         2 ~TGekPy~C~~C~k~---F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSA---FTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCE---ESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCc---ccChHHHHHHccccC
Confidence            689999999999999   999999999999998

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=4.4e-09  Score=58.78  Aligned_cols=29  Identities=24%  Similarity=0.504  Sum_probs=26.2

Q ss_pred             CCCccCCC--CCccccCchHHHHHHHHhcCC
Q psy2238         208 NKPIPCPK--CGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       208 ~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      ||||.|+.  |+|+|++.++|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999976  999999999999999999854

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=2.5e-09  Score=58.38  Aligned_cols=27  Identities=33%  Similarity=0.620  Sum_probs=23.9

Q ss_pred             CCccCCC--CCccccCchHHHHHHHHhcC
Q psy2238         209 KPIPCPK--CGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       209 k~~~C~~--C~k~f~~~~~L~~H~~~H~~  235 (311)
                      |||+|+.  |+|+|++.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899966  99999999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.6e-09  Score=56.61  Aligned_cols=26  Identities=27%  Similarity=0.585  Sum_probs=23.9

Q ss_pred             CCccCCC--CCccccCchHHHHHHHHhc
Q psy2238         209 KPIPCPK--CGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       209 k~~~C~~--C~k~f~~~~~L~~H~~~H~  234 (311)
                      |||.|+.  |+|+|++.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999966  9999999999999999996

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.1e-08  Score=59.22  Aligned_cols=30  Identities=17%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |++++||+|.+|++.   |....+|..|+++|+
T Consensus         3 HTgekPy~C~~C~k~---F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           3 HTGEKPYACSHCDKT---FRQKQLLDMHFKRYH   32 (36)
T ss_dssp             CCCCCCEECSSSSCE---ESSHHHHHHHHHHTT
T ss_pred             CCCCCCEECCCCCCC---cCCHhHHHHhCcccC
Confidence            889999999999999   899999999999998

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=5e-09  Score=61.05  Aligned_cols=34  Identities=15%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             HHHHhcccCCCCccCCCCCCCCCcccCCCchhcch-HHHHHHhhhhcC
Q psy2238         161 HQASCQVLESENYKCKSCNKLGQYSCLRCKICFCE-DHARRKGFKYEK  207 (311)
Q Consensus       161 H~~~h~~~~~k~~~C~~C~~~~~~~C~~C~k~F~~-~~l~~H~~~h~~  207 (311)
                      |.|+|  ++|+||+           |++|+++|.+ .+|.+|+++|..
T Consensus         2 h~R~H--TgeKPy~-----------C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGS--TGIKPFQ-----------CPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTT--CCSSSBC-----------CTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcc--CCccCeE-----------eCCCCCEecCHHHHHHHHhcCcC
Confidence            56788  9999999           9999999954 599999999864

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.2e-08  Score=57.62  Aligned_cols=33  Identities=27%  Similarity=0.551  Sum_probs=30.2

Q ss_pred             ccccc--cccccccCCCHHHHHHhHhhhccCCCcCcccCCC
Q psy2238          65 PQCGH--CGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDF  103 (311)
Q Consensus        65 ~~C~~--C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~  103 (311)
                      |.|+.  |++.   |.....|++|+++|+   +++||+|+.
T Consensus         2 f~C~~~~C~k~---F~~~~~L~~H~r~Ht---gekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKS---FNFKKHLKEHMKLHS---DTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCE---ESSHHHHHHHHHHHH---TSCCCSCCS
T ss_pred             eECCCCCCCCe---eCChhHhccccCeeC---CCCCEeCCC
Confidence            67876  9999   999999999999999   889999974

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.2e-08  Score=52.73  Aligned_cols=26  Identities=23%  Similarity=0.561  Sum_probs=24.6

Q ss_pred             CCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          63 RLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        63 k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |||+|.+||+.   |...+.|.+|+++|+
T Consensus         1 KPy~C~eCgK~---F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKA---FSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCE---ESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCe---eccCcccccCccCCC
Confidence            69999999999   999999999999995

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.9e-08  Score=49.75  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=21.8

Q ss_pred             CccCCCCCccccCchHHHHHHHHhcC
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      |++|+.|+|.|+++..|+.|||.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            57888888888888888888888874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.7e-08  Score=53.29  Aligned_cols=27  Identities=22%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             ceeecCC--CC-CCCChHHHHHHHHHhcccCC
Q psy2238         142 RVYKCCF--CE-GFLCEDDQFEHQASCQVLES  170 (311)
Q Consensus       142 ~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~  170 (311)
                      +||+|++  |+ .|...++|++|+++|  +||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~H--tGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSH--TGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHT--TTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcC--cCC
Confidence            6899988  99 899999999999999  875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.1e-08  Score=55.85  Aligned_cols=30  Identities=13%  Similarity=0.107  Sum_probs=27.4

Q ss_pred             ccCCCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          59 QSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        59 h~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |++++||+|++|++.   |....+|..|++.++
T Consensus         3 HTgekP~~C~~C~k~---F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           3 HSGEKPYECYICHAR---FTQSGTMKMHILQKH   32 (36)
T ss_dssp             CSCCCSEECTTTCCE---ESCHHHHHHHHHHHS
T ss_pred             cCCCCCEeCCCCccc---ccchHHHHHHccccc
Confidence            889999999999999   999999999987655

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.8e-08  Score=53.35  Aligned_cols=27  Identities=19%  Similarity=0.412  Sum_probs=24.7

Q ss_pred             ceeecCC--CC-CCCChHHHHHHHHHhcccCC
Q psy2238         142 RVYKCCF--CE-GFLCEDDQFEHQASCQVLES  170 (311)
Q Consensus       142 ~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~  170 (311)
                      +||+|++  |+ +|...++|.+|+++|  +||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~H--TGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIH--TGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHH--HCC
T ss_pred             CCccCCCCCCCceECcHHHcCcccccc--CCC
Confidence            6899987  99 899999999999999  875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=5.7e-09  Score=64.13  Aligned_cols=40  Identities=13%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhcccCCCCccCCCCCCCCCcccCC--Cchhc-chHHHHHHhhhhcCCC
Q psy2238         156 DDQFEHQASCQVLESENYKCKSCNKLGQYSCLR--CKICF-CEDHARRKGFKYEKNK  209 (311)
Q Consensus       156 ~~L~~H~~~h~~~~~k~~~C~~C~~~~~~~C~~--C~k~F-~~~~l~~H~~~h~~~k  209 (311)
                      ..|..|+. |  ++++||+           |.+  |+++| ...+|..|+++|+|+|
T Consensus         5 ~~l~~h~~-h--~gekpy~-----------C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-E--MPDKTFE-----------CLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-E--ETTTEEE-----------CCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-c--cCCCCeE-----------CCcCCCCccccCchHHHhhcccccCCC
Confidence            34667774 7  9999999           765  99999 4559999999999986

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=9.9e-08  Score=49.41  Aligned_cols=27  Identities=26%  Similarity=0.571  Sum_probs=24.6

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhc
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |+||.|.+||+.|.++...++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999885

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.2e-07  Score=52.56  Aligned_cols=28  Identities=21%  Similarity=0.549  Sum_probs=24.9

Q ss_pred             ceeecC--CCC-CCCChHHHHHHHHHhcccCCC
Q psy2238         142 RVYKCC--FCE-GFLCEDDQFEHQASCQVLESE  171 (311)
Q Consensus       142 ~~~~C~--~C~-~f~~~~~L~~H~~~h~~~~~k  171 (311)
                      +||.|+  .|+ .|...++|.+|+++|  ++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~H--tgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTH--TGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTT--SCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcc--cccC
Confidence            588995  599 899999999999999  8875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.9e-07  Score=47.85  Aligned_cols=29  Identities=34%  Similarity=0.715  Sum_probs=26.8

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +|||.|++|...|.++.-|.-|+|+|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999864

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=8.8e-07  Score=49.17  Aligned_cols=25  Identities=32%  Similarity=0.723  Sum_probs=23.4

Q ss_pred             CceeecCC--CC-CCCChHHHHHHHHHh
Q psy2238         141 GRVYKCCF--CE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       141 ~~~~~C~~--C~-~f~~~~~L~~H~~~h  165 (311)
                      ++||.|++  |+ +|...++|.+|+++|
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~H   28 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhc
Confidence            58999988  99 899999999999998

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=4.4e-07  Score=49.22  Aligned_cols=26  Identities=27%  Similarity=0.439  Sum_probs=23.4

Q ss_pred             ceeecCC--CC-CCCChHHHHHHHHHhcccC
Q psy2238         142 RVYKCCF--CE-GFLCEDDQFEHQASCQVLE  169 (311)
Q Consensus       142 ~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~  169 (311)
                      +||+|++  |+ .|...++|.+|+++|  +|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~H--tG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIH--TG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHH--HT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCcc--CC
Confidence            6899987  99 899999999999998  64

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.3e-06  Score=44.80  Aligned_cols=29  Identities=24%  Similarity=0.619  Sum_probs=24.4

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      ++||+|.+|.+.-..++.|..|+|.|+++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57888888888888888888888888863

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1e-06  Score=47.19  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=22.2

Q ss_pred             ceeecCC--CC-CCCChHHHHHHHHHh
Q psy2238         142 RVYKCCF--CE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       142 ~~~~C~~--C~-~f~~~~~L~~H~~~h  165 (311)
                      +||.|++  |+ +|...++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            5889988  99 899999999999998

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.1e-06  Score=47.17  Aligned_cols=29  Identities=21%  Similarity=0.291  Sum_probs=15.3

Q ss_pred             ccCCCCCccccCchHHHHHHHHhcCCCCC
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRSHKFGRQQ  239 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  239 (311)
                      ..|..|||.|.....|.+|..+|++++||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34555555555555555555555555554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.9e-06  Score=45.18  Aligned_cols=27  Identities=19%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             CCccCCC--CCccccCchHHHHHHHHhcC
Q psy2238         209 KPIPCPK--CGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       209 k~~~C~~--C~k~f~~~~~L~~H~~~H~~  235 (311)
                      |||.|.+  |+|+|+..++|++|+++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899955  99999999999999998764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.3e-06  Score=44.50  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=17.1

Q ss_pred             ccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +.|..|||+|..++.|++|+.+|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            45666677776666677776666653

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.1e-06  Score=46.04  Aligned_cols=29  Identities=24%  Similarity=0.435  Sum_probs=25.6

Q ss_pred             cccCCCchhcchH-HHHHHhhhhcCCCCcc
Q psy2238         184 YSCLRCKICFCED-HARRKGFKYEKNKPIP  212 (311)
Q Consensus       184 ~~C~~C~k~F~~~-~l~~H~~~h~~~k~~~  212 (311)
                      ..|+.||+.|... +|.+|...|+++|||.
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            4599999999655 9999999999999983

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=3.6e-06  Score=43.46  Aligned_cols=25  Identities=20%  Similarity=0.481  Sum_probs=23.5

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      ++||.|++|| +|+.....++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            5899999999 899999999999998

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.7e-06  Score=40.99  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=23.5

Q ss_pred             CccccccccccccCCCHHHHHHhHhhhc
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |.+|++|++.   |+.+..|..|++.|+
T Consensus         1 phkc~~c~kc---fsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKC---FSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBC---CCCHHHHHHHGGGCC
T ss_pred             CCccchhhhH---hcchhHHHHHhhccC
Confidence            5789999999   999999999999997

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.2e-06  Score=41.60  Aligned_cols=26  Identities=27%  Similarity=0.678  Sum_probs=24.2

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhc
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      +||+|..|++.-...++|++|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999985

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=8.1e-06  Score=41.54  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             cccCCCchhc-chHHHHHHhhhhcCC
Q psy2238         184 YSCLRCKICF-CEDHARRKGFKYEKN  208 (311)
Q Consensus       184 ~~C~~C~k~F-~~~~l~~H~~~h~~~  208 (311)
                      +.|.+|||+| .++.|.+|+.+|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            4599999999 677999999999986

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.72  E-value=7.8e-06  Score=40.33  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.9

Q ss_pred             ccCCCCCccccCchHHHHHHHHhc
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |+|..|.++|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999885

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.5e-05  Score=41.03  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=24.2

Q ss_pred             ccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         211 IPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      |.|+.|+.....++-|++|+|+|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999998763

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=1.4e-05  Score=40.01  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=21.7

Q ss_pred             cCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         212 PCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       212 ~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      +|+.|.|.|.++..|+.|-|.|++++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            68888888888888888888888764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.4e-05  Score=45.27  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=24.2

Q ss_pred             cCCCCccCCCCCccccCchHHHHHHHH
Q psy2238         206 EKNKPIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       206 ~~~k~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      +|-|||.|.+|+|.|.+..++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            467999999999999999999999654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3.9e-05  Score=39.38  Aligned_cols=26  Identities=15%  Similarity=0.138  Sum_probs=23.6

Q ss_pred             eecCCCC-CCCChHHHHHHHHHhcccCCC
Q psy2238         144 YKCCFCE-GFLCEDDQFEHQASCQVLESE  171 (311)
Q Consensus       144 ~~C~~C~-~f~~~~~L~~H~~~h~~~~~k  171 (311)
                      |.|++|+ .....+-|+.|+++|  ++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsH--T~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTH--TDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHT--SSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHh--cCCC
Confidence            7899999 899999999999999  8764

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.9e-05  Score=39.67  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=23.4

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLE  169 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~  169 (311)
                      ++||+|..|. .-...+.|..|++.|  +|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~h--tg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSH--TG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTC--CS
T ss_pred             CCcceeeecccccCCchheEEeeecc--cC
Confidence            4789999999 888889999999998  66

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.34  E-value=5.4e-05  Score=38.74  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=23.0

Q ss_pred             CCccCC--CCCccccCchHHHHHHHHhc
Q psy2238         209 KPIPCP--KCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       209 k~~~C~--~C~k~f~~~~~L~~H~~~H~  234 (311)
                      .||+|+  .|++.|+..+-|++|.++|.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhccC
Confidence            589995  59999999999999999883

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=9e-05  Score=38.66  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=24.9

Q ss_pred             CCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          62 QRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        62 ~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      ++||.|++|...   |..+..+..|.++|.
T Consensus         1 ekp~~cpic~qr---fkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLR---FKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEE---CSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHH---hhccccceEeeeccc
Confidence            589999999999   999999999999997

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.25  E-value=4.5e-05  Score=40.22  Aligned_cols=25  Identities=24%  Similarity=0.465  Sum_probs=19.3

Q ss_pred             CccCCCCCccccCchHHHHHHH-Hhc
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTR-SHK  234 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~-~H~  234 (311)
                      ||.|.+|++.|++...|.+|+. .|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            6888888888888888888864 444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=6e-05  Score=39.71  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=23.0

Q ss_pred             CCccCCC--CCccccCchHHHHHH-HHhcC
Q psy2238         209 KPIPCPK--CGFETSQTKDLSMST-RSHKF  235 (311)
Q Consensus       209 k~~~C~~--C~k~f~~~~~L~~H~-~~H~~  235 (311)
                      |||.|+.  |.|+|+..+.-.+|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            6899955  999999999999997 88864

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.21  E-value=0.00012  Score=41.18  Aligned_cols=30  Identities=20%  Similarity=0.338  Sum_probs=26.2

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhcCCC
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHKFGR  237 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~  237 (311)
                      .+.|+|.+|++.|.+..+|--||+.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            467999999999999999999999997664

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00019  Score=37.01  Aligned_cols=26  Identities=19%  Similarity=0.579  Sum_probs=22.8

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhc
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      +||+|..|...-..+++|+.|+++-+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            68999999999999999999988643

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.13  E-value=0.00014  Score=37.40  Aligned_cols=28  Identities=25%  Similarity=0.472  Sum_probs=23.1

Q ss_pred             CCccC--CCCCccccCchHHHHHHHHhcCC
Q psy2238         209 KPIPC--PKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 k~~~C--~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +||.|  ..|.|.|.+-..|.+|..+|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            57888  56889999999999998888864

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00025  Score=36.29  Aligned_cols=29  Identities=17%  Similarity=0.285  Sum_probs=22.5

Q ss_pred             CCCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         208 NKPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       208 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +..|.|..|...|.+.-.|+.||-.|+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45678888888888888888888888764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00014  Score=36.80  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=22.6

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      +||+|..|. .-...++|+.|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            799999999 899999999999998

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00018  Score=36.97  Aligned_cols=27  Identities=30%  Similarity=0.625  Sum_probs=23.4

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      +||+|..|.....+.++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            689999999999999999999876544

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00031  Score=36.13  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=22.4

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      +||+|.+|. +....++|+.|+++-
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhcc
Confidence            589999999 999999999999986

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00022  Score=36.52  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=21.5

Q ss_pred             CccCCCCCccccCchHHHHHHHHh
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRSH  233 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~H  233 (311)
                      ||.|..|..+|.++.+|..||++-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            789999999999999999999763

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.73  E-value=0.00053  Score=33.60  Aligned_cols=24  Identities=21%  Similarity=0.517  Sum_probs=22.1

Q ss_pred             ccccccccccccCCCHHHHHHhHhhhc
Q psy2238          65 PQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        65 ~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |+|..|.+.   |..++.|.+|+++|.
T Consensus         1 ykcglcers---fveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERS---FVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCB---CSSHHHHHHHGGGTC
T ss_pred             CcccchHHH---HHHHHHHHHHHHhhc
Confidence            789999999   899999999999885

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00065  Score=37.79  Aligned_cols=28  Identities=29%  Similarity=0.731  Sum_probs=24.6

Q ss_pred             CCCCccC--CCCCccccCchHHHHHHHHhc
Q psy2238         207 KNKPIPC--PKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       207 ~~k~~~C--~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      .+|||.|  +.|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4799999  779999999999999988885

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00062  Score=35.43  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.9

Q ss_pred             CCccccc--cccccccCCCHHHHHHhHhhhc
Q psy2238          63 RLPQCGH--CGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        63 k~~~C~~--C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      +||.|.+  |++.   +...++|+.|++.++
T Consensus         1 KPY~Ck~~gC~K~---YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKR---YTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCE---ESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcc---cCCHHHHHHHHHhhC
Confidence            5899977  8999   899999999999765

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.00099  Score=33.15  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             cccccccccccCCCHHHHHHhHhhhccCCCcC
Q psy2238          66 QCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMV   97 (311)
Q Consensus        66 ~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~   97 (311)
                      +|+.|.+.   |.++.-|+.|-+.|+   |++
T Consensus         2 qcp~c~k~---f~skyylkvhnr~ht---gek   27 (27)
T d2dlqa4           2 ECPTCHKK---FLSKYYLKVHNRKHT---GEK   27 (27)
T ss_dssp             CCTTTCCC---CSSHHHHHHHHHHHS---SCC
T ss_pred             cCcchHHH---HHHhHhhhhcccccc---CCC
Confidence            69999999   999999999999999   653

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.0007  Score=34.01  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             CccCCCCCccccCchHHHHHHHH
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      ||+|+.|||.|.++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            79999999999999999999643

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0011  Score=33.74  Aligned_cols=28  Identities=21%  Similarity=0.386  Sum_probs=24.8

Q ss_pred             CceeecCCCC-CCCChHHHHHHHHHhcccCC
Q psy2238         141 GRVYKCCFCE-GFLCEDDQFEHQASCQVLES  170 (311)
Q Consensus       141 ~~~~~C~~C~-~f~~~~~L~~H~~~h~~~~~  170 (311)
                      +..|.|..|. .|.....|+.||-.|  +|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsh--tge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSH--TGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHH--SSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecc--cCC
Confidence            4578999999 899999999999998  775

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.0018  Score=31.70  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.6

Q ss_pred             CccCCCCCccccCchHHHHHHHH
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      ||+|+.|...|.++..|..||..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999753

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.97  E-value=0.002  Score=31.57  Aligned_cols=23  Identities=22%  Similarity=0.514  Sum_probs=20.8

Q ss_pred             CccCCCCCccccCchHHHHHHHH
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      .|.|+.|-|.|+++.+|..|.++
T Consensus         1 vypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEE
Confidence            38899999999999999999876

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0022  Score=32.83  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      +||+|++|. -..+.++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            589999999 789999999998764

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.003  Score=31.84  Aligned_cols=25  Identities=28%  Similarity=0.640  Sum_probs=20.0

Q ss_pred             CccCCCCCccccCchHHHHHHHHhc
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |-+|+.|.++.+.+..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5578888888888888888888875

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.75  E-value=0.0029  Score=32.19  Aligned_cols=27  Identities=26%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             CCCccccc--cccccccCCCHHHHHHhHhhhc
Q psy2238          62 QRLPQCGH--CGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        62 ~k~~~C~~--C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      +.||+|+.  |++.   |...+.|++|.++|.
T Consensus         1 q~py~c~hegcdk~---fs~ps~lkrhekvha   29 (29)
T d2j7ja2           1 QLPYECPHEGCDKR---FSLPSRLKRHEKVHA   29 (29)
T ss_dssp             TCCEECCSTTCCCE---ESSHHHHHHHHHHHH
T ss_pred             CCCccCCccCcccc---ccCHHHHhhhhhccC
Confidence            35788854  8999   899999999998873

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0021  Score=32.82  Aligned_cols=23  Identities=26%  Similarity=0.650  Sum_probs=21.2

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHh
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      ||.|..|. .|.++.+|..||+.-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            78999999 999999999999874

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.004  Score=33.35  Aligned_cols=28  Identities=14%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcCC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      ..|.|..|+|.|++...|.+|....++.
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCCC
Confidence            3589999999999999999998877653

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.59  E-value=0.0031  Score=33.03  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=19.0

Q ss_pred             CcccCCCchhcchH-HHHHHhhhhcC
Q psy2238         183 QYSCLRCKICFCED-HARRKGFKYEK  207 (311)
Q Consensus       183 ~~~C~~C~k~F~~~-~l~~H~~~h~~  207 (311)
                      ||.|.+|++.|.+. -|++|.+.-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            56799999999655 67888765543

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.46  E-value=0.0044  Score=34.56  Aligned_cols=27  Identities=19%  Similarity=0.428  Sum_probs=24.6

Q ss_pred             CCCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          62 QRLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        62 ~k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      .+.|.|.+|++.   |.+-.+|-=|++.|.
T Consensus         3 ~r~~~C~~C~k~---F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKRE---FRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCE---ESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCc---cCCcccccchHhhhc
Confidence            467999999999   899999999999997

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.0037  Score=30.52  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=20.2

Q ss_pred             ceeecCCCC-CCCChHHHHHHHHH
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQAS  164 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~~  164 (311)
                      .||+|+.|. .|.++..|+.||..
T Consensus         1 mpykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHh
Confidence            389999999 89999999999753

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0067  Score=35.33  Aligned_cols=27  Identities=22%  Similarity=0.443  Sum_probs=24.1

Q ss_pred             CCccCCCCCccccCchHHHHHHHHhcC
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~~H~~  235 (311)
                      -.|.|.+|+|.|+...-|+.|...|--
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            458999999999999999999988854

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0067  Score=34.06  Aligned_cols=27  Identities=19%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             cCCCCccccccccccccCCCHHHHHHhHhh
Q psy2238          60 SVQRLPQCGHCGKIKCMLKTGDCVIKHAGV   89 (311)
Q Consensus        60 ~~~k~~~C~~C~k~~~~f~~~~~L~~H~~~   89 (311)
                      ++-+||.|.+|++.   |-....+.+|...
T Consensus         1 TGiKPYeC~~C~Kr---FMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKR---FMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCE---ESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhh---hhhHHHHHHhhhh
Confidence            35688999999999   7788888888643

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.80  E-value=0.0068  Score=30.91  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=18.5

Q ss_pred             CCCchhcchH-HHHHHhhhhcCC
Q psy2238         187 LRCKICFCED-HARRKGFKYEKN  208 (311)
Q Consensus       187 ~~C~k~F~~~-~l~~H~~~h~~~  208 (311)
                      .-|.|.|... +|.+|...|+|+
T Consensus         8 egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           8 EGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SSCCCEESSTTHHHHHHHHHHTC
T ss_pred             ccccccchhhhhhhhhhccccCC
Confidence            5699999554 999999999885

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.012  Score=32.50  Aligned_cols=25  Identities=24%  Similarity=0.390  Sum_probs=22.1

Q ss_pred             Cceeec--CCCC-CCCChHHHHHHHHHh
Q psy2238         141 GRVYKC--CFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       141 ~~~~~C--~~C~-~f~~~~~L~~H~~~h  165 (311)
                      ++||.|  +-|+ +|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            689999  5588 899999999999887

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.013  Score=29.38  Aligned_cols=25  Identities=12%  Similarity=0.316  Sum_probs=22.2

Q ss_pred             CccccccccccccCCCHHHHHHhHhhhc
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      |-+|+.|...   -+++.+|+.|.++|-
T Consensus         2 pekc~ecsys---csskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYS---CSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCE---ESSHHHHHHHHGGGC
T ss_pred             CccCcccccc---cCcHHHHHHhhcccc
Confidence            5679999999   799999999999985

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.0079  Score=31.42  Aligned_cols=24  Identities=29%  Similarity=0.624  Sum_probs=19.5

Q ss_pred             ceeecCC--CC-CCCChHHHHHHH-HHh
Q psy2238         142 RVYKCCF--CE-GFLCEDDQFEHQ-ASC  165 (311)
Q Consensus       142 ~~~~C~~--C~-~f~~~~~L~~H~-~~h  165 (311)
                      +||.|.+  |. .|+..+.-..|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            5788877  77 688888888997 777

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.02  Score=28.60  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=21.0

Q ss_pred             CccCCCCCccccCchHHHHHHHH
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      .|+||.|+-...+++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            48999999999999999999875

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.44  E-value=0.021  Score=28.37  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=19.0

Q ss_pred             ccC--CCCCccccCchHHHHHHHHhc
Q psy2238         211 IPC--PKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       211 ~~C--~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      |.|  ..|+|.|..-..|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            556  568888888888888888775

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.25  E-value=0.038  Score=27.47  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=18.9

Q ss_pred             CccccccccccccCCCHHHHHHhHh
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAG   88 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~   88 (311)
                      ||+|..||+.   +-.+.+|..|..
T Consensus         1 pf~c~kcgkc---yfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKC---YFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCB---CSSHHHHHHHHH
T ss_pred             CCccccchhh---hhhHhHHHHHHH
Confidence            6899999999   778888988865

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.026  Score=28.21  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=20.2

Q ss_pred             eeecCCCC-CCCChHHHHHHHHHh
Q psy2238         143 VYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       143 ~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      .|+|+.|+ ....++.|..|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            38899999 799999999999864

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.025  Score=30.49  Aligned_cols=18  Identities=17%  Similarity=-0.033  Sum_probs=9.4

Q ss_pred             ccccCchHHHHHHHHhcC
Q psy2238         218 FETSQTKDLSMSTRSHKF  235 (311)
Q Consensus       218 k~f~~~~~L~~H~~~H~~  235 (311)
                      +.|.....|..|||+|++
T Consensus        15 ~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHC
T ss_pred             CcchhHHHHHHHHhhcCC
Confidence            345555555555555554

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.92  E-value=0.029  Score=29.00  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=22.0

Q ss_pred             CCccC--CCCCccccCchHHHHHHHHhcCC
Q psy2238         209 KPIPC--PKCGFETSQTKDLSMSTRSHKFG  236 (311)
Q Consensus       209 k~~~C--~~C~k~f~~~~~L~~H~~~H~~~  236 (311)
                      +.|.|  +.|+-.|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            45777  56888888888888888888864

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.043  Score=29.54  Aligned_cols=23  Identities=13%  Similarity=-0.034  Sum_probs=17.4

Q ss_pred             cCCCchhc-chHHHHHHhhhhcCC
Q psy2238         186 CLRCKICF-CEDHARRKGFKYEKN  208 (311)
Q Consensus       186 C~~C~k~F-~~~~l~~H~~~h~~~  208 (311)
                      |+.=++.| ..-.|+.|+++|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            55556668 444999999999986

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.028  Score=28.28  Aligned_cols=21  Identities=10%  Similarity=0.143  Sum_probs=18.2

Q ss_pred             CCCCccccCchHHHHHHHHhc
Q psy2238         214 PKCGFETSQTKDLSMSTRSHK  234 (311)
Q Consensus       214 ~~C~k~f~~~~~L~~H~~~H~  234 (311)
                      ..|.|.|...+.|++|+.+|.
T Consensus         7 kgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           7 KGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHGGGS
T ss_pred             ccHHHHhhchHHHHHHhhccC
Confidence            359999999999999998874

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.19  E-value=0.097  Score=30.17  Aligned_cols=33  Identities=21%  Similarity=0.504  Sum_probs=25.4

Q ss_pred             cCCCCccCCCCCccccCchHHHHHHHHhcCCCC
Q psy2238         206 EKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQ  238 (311)
Q Consensus       206 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  238 (311)
                      ..+.|-.|++|+....++-+|++|+..-+..+|
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            346788899999988999999999876554444

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.14  E-value=0.051  Score=28.63  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=19.9

Q ss_pred             CCccCCCCCccccCchHHHHHHH
Q psy2238         209 KPIPCPKCGFETSQTKDLSMSTR  231 (311)
Q Consensus       209 k~~~C~~C~k~f~~~~~L~~H~~  231 (311)
                      -.|.|+-||..|+..+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            35889999999999999999964

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.93  E-value=0.068  Score=25.98  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             ccccccccccccCCCHHHHHHhHhhh
Q psy2238          65 PQCGHCGKIKCMLKTGDCVIKHAGVF   90 (311)
Q Consensus        65 ~~C~~C~k~~~~f~~~~~L~~H~~~h   90 (311)
                      |.|+.|-+.   |..+.++..|.++-
T Consensus         2 ypcp~cfke---ftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKE---FTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCE---ESCHHHHHHHHHHH
T ss_pred             cCCchhhHH---hccccCceEEEEEe
Confidence            789999999   89999999998853

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.1  Score=30.14  Aligned_cols=26  Identities=23%  Similarity=0.625  Sum_probs=23.2

Q ss_pred             CCccccccccccccCCCHHHHHHhHhhhc
Q psy2238          63 RLPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        63 k~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      -.|.|..|+|.   |.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~---Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKV---FTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCC---CSCHHHHHHHHHHHT
T ss_pred             ceeeccccccc---cCCHHHHhHhHHhcC
Confidence            36899999999   999999999998875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.05  E-value=0.072  Score=28.02  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             ceeecCCCC-CCCChHHHHHHHH
Q psy2238         142 RVYKCCFCE-GFLCEDDQFEHQA  163 (311)
Q Consensus       142 ~~~~C~~C~-~f~~~~~L~~H~~  163 (311)
                      ..|.|.-|| .|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            458899999 9999999998864

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.67  E-value=0.12  Score=26.61  Aligned_cols=27  Identities=19%  Similarity=0.371  Sum_probs=21.5

Q ss_pred             ceeecCC--CC-CCCChHHHHHHHHHhcccCC
Q psy2238         142 RVYKCCF--CE-GFLCEDDQFEHQASCQVLES  170 (311)
Q Consensus       142 ~~~~C~~--C~-~f~~~~~L~~H~~~h~~~~~  170 (311)
                      +.|.|++  |+ .|.....|..|+-.|  +||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckH--TGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKH--TGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHH--HCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhh--cCC
Confidence            3566654  88 799999999999998  775

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.74  E-value=0.18  Score=26.81  Aligned_cols=26  Identities=8%  Similarity=0.197  Sum_probs=21.9

Q ss_pred             CCCCccCCCCCccccCchHHHHHHHH
Q psy2238         207 KNKPIPCPKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       207 ~~k~~~C~~C~k~f~~~~~L~~H~~~  232 (311)
                      ++..|.|.+|.+.++.-+++-+|.-+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHh
Confidence            45679999999999999999999544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=0.11  Score=27.52  Aligned_cols=24  Identities=17%  Similarity=0.411  Sum_probs=17.6

Q ss_pred             cccCCCchhcchH-HHHHHhhhhcC
Q psy2238         184 YSCLRCKICFCED-HARRKGFKYEK  207 (311)
Q Consensus       184 ~~C~~C~k~F~~~-~l~~H~~~h~~  207 (311)
                      |.|..|+|+|++. .+.+|-..-+|
T Consensus         5 fvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeecccccchhcchHHHHHhhhcCC
Confidence            5699999999555 77777654443

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.57  Score=23.55  Aligned_cols=20  Identities=15%  Similarity=0.471  Sum_probs=14.0

Q ss_pred             ccCCCCCccccCchHHHHHH
Q psy2238         211 IPCPKCGFETSQTKDLSMST  230 (311)
Q Consensus       211 ~~C~~C~k~f~~~~~L~~H~  230 (311)
                      |.|..|+|...+...++-|+
T Consensus         3 ftc~hcgkqlks~~gmkyhv   22 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHV   22 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEE
Confidence            66777777777777777764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.05  E-value=0.33  Score=30.67  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=15.8

Q ss_pred             CccCCCCCccccCchHHHHHHH
Q psy2238         210 PIPCPKCGFETSQTKDLSMSTR  231 (311)
Q Consensus       210 ~~~C~~C~k~f~~~~~L~~H~~  231 (311)
                      .|-|..|+|.|.+...|..|++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTT
T ss_pred             EEecccccCccCCHHHHHHHHc
Confidence            4677777777777777777754

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.81  E-value=0.17  Score=28.01  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=15.1

Q ss_pred             cccccccccccccCCCceeecCCCC
Q psy2238         126 DAVCLECERGVWDHGGRVYKCCFCE  150 (311)
Q Consensus       126 ~~~C~~C~~~f~~~~~~~~~C~~C~  150 (311)
                      .|.|.+||..+.  ++.|-.|++|+
T Consensus         5 ~~~C~vCG~i~~--g~~P~~CPvCg   27 (37)
T d1nnqa2           5 VYICPICGYTAV--DEAPEYCPVCG   27 (37)
T ss_dssp             EEECTTTCCEEE--SCCCSBCTTTC
T ss_pred             EEECCCCCCEec--CCCCCcCCCCC
Confidence            367777776655  34666777777

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=84.22  E-value=0.3  Score=24.62  Aligned_cols=25  Identities=20%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             CCccC--CCCCccccCchHHHHHH-HHh
Q psy2238         209 KPIPC--PKCGFETSQTKDLSMST-RSH  233 (311)
Q Consensus       209 k~~~C--~~C~k~f~~~~~L~~H~-~~H  233 (311)
                      +.|.|  ..|+..|+++.+|++|. |.|
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhc
Confidence            35778  57999999999999996 444

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.32  E-value=0.34  Score=30.13  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=16.8

Q ss_pred             CCccccccccccccCCCHHHHHHhHhhhccCCCcCcccCCCCh
Q psy2238          63 RLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCE  105 (311)
Q Consensus        63 k~~~C~~C~k~~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~  105 (311)
                      ..|.|+.|++.   |+....+..   ...   ..-.|.|..|+
T Consensus        13 ~~y~Cp~C~~~---ys~Lda~~L---~d~---~~~~F~C~~C~   46 (62)
T d1vd4a_          13 ASFKCPVCSST---FTDLEANQL---FDP---MTGTFRCTFCH   46 (62)
T ss_dssp             SEEECSSSCCE---EEHHHHHHH---EET---TTTEEBCSSSC
T ss_pred             CceECCCCCCC---cchhhHHHh---cCc---CCCeEEecCCC
Confidence            35666666666   454333322   111   11256666666

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=0.89  Score=22.79  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=21.0

Q ss_pred             CccccccccccccCCCHHHHHHhHhhhc
Q psy2238          64 LPQCGHCGKIKCMLKTGDCVIKHAGVFS   91 (311)
Q Consensus        64 ~~~C~~C~k~~~~f~~~~~L~~H~~~h~   91 (311)
                      .|.|..||+.   ..+...++.|....+
T Consensus         2 ~ftc~hcgkq---lks~~gmkyhvmadh   26 (30)
T d2ctda2           2 MFTCHHCGKQ---LRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCCSSSCCC---CSSHHHHHHHHHHHT
T ss_pred             ceechhHHHH---HhhccCceEEEeecc
Confidence            4789999999   899999999987544

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.80  E-value=0.48  Score=23.73  Aligned_cols=19  Identities=26%  Similarity=0.391  Sum_probs=15.7

Q ss_pred             CCCCccccCchHHHHHHHH
Q psy2238         214 PKCGFETSQTKDLSMSTRS  232 (311)
Q Consensus       214 ~~C~k~f~~~~~L~~H~~~  232 (311)
                      +.|++.|+....|..|.+.
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            6789999999999888764

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.36  E-value=0.33  Score=30.00  Aligned_cols=26  Identities=15%  Similarity=0.391  Sum_probs=23.5

Q ss_pred             CCceeecCCCC-CCCChHHHHHHHHHh
Q psy2238         140 GGRVYKCCFCE-GFLCEDDQFEHQASC  165 (311)
Q Consensus       140 ~~~~~~C~~C~-~f~~~~~L~~H~~~h  165 (311)
                      ....|+|..|. +|.....|..|+..|
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~h   41 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIH   41 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhc
Confidence            44679999999 999999999999998