Psyllid ID: psy2242

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------

MPIGDFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGASIMMKGIEPWTFKWNSVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM

ccccccccccEEEEEEccccccEEEEEEEEccccccccccHHHHHHHHHcccccccccccccEEcccEEEEcccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccccccEEEEEccccccEEEEEEEEEccccccccccHHHHHHHcccHHHHHHHccccHHHHHHHHHHcccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccccccccEEEccccEEEEEEcccccccEEEEEccccEEEcccccccccccEEEEccccccccccccc

mpigdfntyggsflyhlnepsplVAVGFVVGldytnpylspfkefqrfkthpavrpvfeggkrIAYGARAlnegglqaiprltfpggclvgctagflnvpkikgthnaMKSGMLAAEATYEALAEAgdevstglepksyedkiKSSWIYKELKevrncrpsfhsklglwgglaysgasimmkgiepwtfkwnsvyeyvpledgsgerlqinaqncihcktcdikdptqninwvvpeggggpayngm

MPIGDFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGdevstglepksyedkiKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGASIMMKGIEPWTFKWNSVYEYVPLEDGSGERLQINAQNCIHCKTCdikdptqninwvvpeggggpayngm

MPIGDFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMlaaeatyealaeaGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGASIMMKGIEPWTFKWNSVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM

****DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL******************KIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGASIMMKGIEPWTFKWNSVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVP***********

*****FNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGASIMMKGIEPWTFKWNSVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGG*******

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		246	2.2.26 [Sep-21-2011]
Q6UPE1		616	Electron transfer flavopr	yes	N/A	0.983	0.392	0.512	3e-78
Q921G7		616	Electron transfer flavopr	yes	N/A	0.983	0.392	0.509	6e-78
Q2KIG0		617	Electron transfer flavopr	yes	N/A	0.983	0.392	0.5	5e-77
P55931		617	Electron transfer flavopr	yes	N/A	0.983	0.392	0.496	1e-76
Q5RDD3		617	Electron transfer flavopr	yes	N/A	0.983	0.392	0.493	6e-76
Q16134		617	Electron transfer flavopr	yes	N/A	0.983	0.392	0.493	7e-76
Q11190		597	Electron transfer flavopr	yes	N/A	0.747	0.308	0.598	8e-63
Q08822		631	Probable electron transfe	yes	N/A	0.747	0.291	0.567	6e-55
P87111		632	Probable electron transfe	yes	N/A	0.731	0.284	0.551	1e-50
Q54XM6		606	Electron transfer flavopr	yes	N/A	0.845	0.343	0.443	1e-46

>sp\|Q6UPE1\|ETFD_RAT Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1	Back alignment and function desciption

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 163/318 (51%), Positives = 188/318 (59%), Gaps = 76/318 (23%)

Query: 5   DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
           D +TYGGSFLYHLNE  PLVAVGFVVGLDY NPYLSPF+EFQR+K HP++RP  EGGKRI
Sbjct: 299 DRHTYGGSFLYHLNEGEPLVAVGFVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRI 358

Query: 65  AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124
           AYGARALNEGGLQ+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG LAAEA ++ L 
Sbjct: 359 AYGARALNEGGLQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGSLAAEAIFKQLT 418

Query: 125 EAGDEVST-GLEPKSYEDKIKSS---------------------------------WIYK 150
               +  T GL    YED +K S                                 WI +
Sbjct: 419 SENLQSKTAGLHVTEYEDNLKQSWVWKELHAVRNIRPSCHGILGVYGGMIYTGIFYWILR 478

Query: 151 ---------------ELKEVRNCRPSFHSK------LGLWGGLAYSGASIMMKGIEPWTF 189
                          +LK  ++C P  + K        L   +A SG +         T 
Sbjct: 479 GMEPWTLKHKGSDSEQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTL 538

Query: 190 KWNS---------------------VYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQ 228
           K +S                     VYE+VPLE G G RLQINAQNC+HCKTCDIKDP+Q
Sbjct: 539 KDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQ 598

Query: 229 NINWVVPEGGGGPAYNGM 246
           NINWVVPEGGGGPAYNGM
Sbjct: 599 NINWVVPEGGGGPAYNGM 616

Accepts electrons from ETF and reduces ubiquinone.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 5EC: .EC: 5EC: .EC: 1

>sp\|Q921G7\|ETFD_MOUSE Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1	Back alignment and function description

>sp\|Q2KIG0\|ETFD_BOVIN Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1	Back alignment and function description

>sp\|P55931\|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2	Back alignment and function description

>sp\|Q5RDD3\|ETFD_PONAB Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1	Back alignment and function description

>sp\|Q16134\|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2	Back alignment and function description

>sp\|Q11190\|ETFD_CAEEL Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=1 SV=2	Back alignment and function description

>sp\|Q08822\|ETFD_YEAST Probable electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CIR2 PE=1 SV=1	Back alignment and function description

>sp\|P87111\|ETFD_SCHPO Probable electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G8.04c PE=3 SV=1	Back alignment and function description

>sp\|Q54XM6\|ETFD_DICDI Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Dictyostelium discoideum GN=etfdh PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		246
91081319		601	PREDICTED: similar to AGAP005894-PA [Tri	0.979	0.400	0.538	5e-82
307186106		648	Electron transfer flavoprotein-ubiquinon	0.743	0.282	0.794	1e-80
322802783		548	hypothetical protein SINV_12757 [Solenop	0.792	0.355	0.726	4e-80
444519295		651	Electron transfer flavoprotein-ubiquinon	0.983	0.371	0.518	3e-79
307197680		556	Electron transfer flavoprotein-ubiquinon	0.800	0.354	0.719	3e-79
332018285		606	Electron transfer flavoprotein-ubiquinon	0.792	0.321	0.712	9e-79
242005232		604	electron transfer flavoprotein-ubiquinon	0.752	0.306	0.736	1e-78
156548356		606	PREDICTED: electron transfer flavoprotei	0.743	0.301	0.762	3e-77
52000614		616	RecName: Full=Electron transfer flavopro	0.983	0.392	0.512	2e-76
52138635		616	electron transfer flavoprotein-ubiquinon	0.983	0.392	0.512	2e-76

>gi\|91081319\|ref\|XP_969902.1\| PREDICTED: similar to AGAP005894-PA [Tribolium castaneum] gi\|270006103\|gb\|EFA02551.1\| hypothetical protein TcasGA2_TC008256 [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 173/321 (53%), Positives = 201/321 (62%), Gaps = 80/321 (24%)

Query: 2   PIGDFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGG 61
           P+  F TYGGSFLYHLNE +PLVAVGFVV LDY+NPYLSPF+EFQRFK HP+V+  FEGG
Sbjct: 285 PLDKF-TYGGSFLYHLNEDTPLVAVGFVVALDYSNPYLSPFREFQRFKHHPSVKHYFEGG 343

Query: 62  KRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121
            RIAYGARALNEGG Q+IP+LTFPGGCLVGC+AGFLNVPKIKGTH AMKSGMLAAE+ YE
Sbjct: 344 TRIAYGARALNEGGFQSIPKLTFPGGCLVGCSAGFLNVPKIKGTHYAMKSGMLAAESAYE 403

Query: 122 ALAEAGDEVSTGLEPKSYEDKIKSSWI--------------------------------- 148
           A+     E + G EPKSY DK+K+S+I                                 
Sbjct: 404 AINSEKQE-TEGFEPKSYPDKVKNSFIWKDLKRVRNVRPSFHNPLGMYGGVMYSGFSIMI 462

Query: 149 --------------YKELKEVRNCRPSFHSK------LGLWGGLAYSGASIMMKGIEP-- 186
                         YK LK  ++C P  + K        L   +A +G +   +G +P  
Sbjct: 463 GGMEPWTFKHGDPDYKRLKPAKDCTPIDYPKPDGKISFDLLSSVALTGTN--HEGDQPPH 520

Query: 187 WTFKWNSV---------------------YEYVPLEDGSGERLQINAQNCIHCKTCDIKD 225
            T K ++V                     YE+VPLE G G+RLQINAQNCIHCKTCDIKD
Sbjct: 521 LTLKDDTVPVKQNLGIYDGPEGRFCPAGVYEFVPLESGDGQRLQINAQNCIHCKTCDIKD 580

Query: 226 PTQNINWVVPEGGGGPAYNGM 246
           P+QNINWVVPEGGGGPAYNGM
Sbjct: 581 PSQNINWVVPEGGGGPAYNGM 601

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307186106\|gb\|EFN71831.1\| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|322802783\|gb\|EFZ22995.1\| hypothetical protein SINV_12757 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|444519295\|gb\|ELV12722.1\| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Tupaia chinensis]	Back alignment and taxonomy information

>gi\|307197680\|gb\|EFN78847.1\| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|332018285\|gb\|EGI58890.1\| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|242005232\|ref\|XP_002423475.1\| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Pediculus humanus corporis] gi\|212506563\|gb\|EEB10737.1\| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|156548356\|ref\|XP_001603617.1\| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|52000614\|sp\|Q6UPE1.1\|ETFD_RAT RecName: Full=Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial; Short=ETF-QO; Short=ETF-ubiquinone oxidoreductase; AltName: Full=Electron-transferring-flavoprotein dehydrogenase; Short=ETF dehydrogenase; Flags: Precursor gi\|34419911\|gb\|AAQ67364.1\| electron transfer flavoprotein-ubiquinone oxidoreductase precursor [Rattus norvegicus]	Back alignment and taxonomy information

>gi|52138635|ref|NP_942037.2| electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial precursor [Rattus norvegicus] gi|51859484|gb|AAH81890.1| Electron-transferring-flavoprotein dehydrogenase [Rattus norvegicus] gi|149048291|gb|EDM00867.1| electron-transferring-flavoprotein dehydrogenase [Rattus norvegicus] gi|327242981|gb|AEA41109.1| electron transferring flavoprotein dehydrogenase [Rattus norvegicus] gi|327242983|gb|AEA41110.1| electron transferring flavoprotein dehydrogenase [Rattus norvegicus]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		246
RGD\|735052		616	Etfdh "electron-transferring-f	0.756	0.301	0.632	9e-90
MGI\|MGI:106100		616	Etfdh "electron transferring f	0.756	0.301	0.627	1.2e-89
FB\|FBgn0033465		604	Etf-QO "Electron transfer flav	0.756	0.307	0.649	3.9e-89
UNIPROTKB\|Q2KIG0		617	ETFDH "Electron transfer flavo	0.756	0.301	0.627	5e-89
UNIPROTKB\|J3KND9		570	ETFDH "Electron transfer flavo	0.804	0.347	0.594	1.3e-88
UNIPROTKB\|Q16134		617	ETFDH "Electron transfer flavo	0.804	0.320	0.594	1.3e-88
ZFIN\|ZDB-GENE-040912-168		617	etfdh "electron-transferring-f	0.788	0.314	0.598	1.3e-88
UNIPROTKB\|F1RW89		616	ETFDH "Electron transfer flavo	0.756	0.301	0.611	1.7e-88
UNIPROTKB\|F6V7P2		617	ETFDH "Uncharacterized protein	0.756	0.301	0.617	1.7e-88
UNIPROTKB\|P55931		617	ETFDH "Electron transfer flavo	0.756	0.301	0.611	2.7e-88

RGD\|735052 Etfdh "electron-transferring-flavoprotein dehydrogenase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

 Score = 640 (230.4 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
 Identities = 119/188 (63%), Positives = 141/188 (75%)

Query:     5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
             D +TYGGSFLYHLNE  PLVAVGFVVGLDY NPYLSPF+EFQR+K HP++RP  EGGKRI
Sbjct:   299 DRHTYGGSFLYHLNEGEPLVAVGFVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRI 358

Query:    65 AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMXXXXXXXXXXX 124
             AYGARALNEGGLQ+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG            
Sbjct:   359 AYGARALNEGGLQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGSLAAEAIFKQLT 418

Query:   125 XXGDEVST-GLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGASI-MMK 182
                 +  T GL    YED +K SW++KEL  VRN RPS H  LG++GG+ Y+G    +++
Sbjct:   419 SENLQSKTAGLHVTEYEDNLKQSWVWKELHAVRNIRPSCHGILGVYGGMIYTGIFYWILR 478

Query:   183 GIEPWTFK 190
             G+EPWT K
Sbjct:   479 GMEPWTLK 486

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA;ISO;IDA

GO:0016491 "oxidoreductase activity" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA;ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=ISO;IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=ISO

GO:0048039 "ubiquinone binding" evidence=IEA;ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IDA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA;ISO

MGI\|MGI:106100 Etfdh "electron transferring flavoprotein, dehydrogenase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0033465 Etf-QO "Electron transfer flavoprotein-ubiquinone oxidoreductase" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2KIG0 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|J3KND9 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q16134 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040912-168 etfdh "electron-transferring-flavoprotein dehydrogenase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RW89 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F6V7P2 ETFDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|P55931 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6UPE1	ETFD_RAT	1, ., 5, ., 5, ., 1	0.5125	0.9837	0.3928	yes	N/A
Q08822	ETFD_YEAST	1, ., 5, ., 5, ., 1	0.5671	0.7479	0.2916	yes	N/A
Q11190	ETFD_CAEEL	1, ., 5, ., 5, ., 1	0.5989	0.7479	0.3082	yes	N/A
Q9HZP5	ETFD_PSEAE	1, ., 5, ., 5, ., 1	0.5480	0.6666	0.2976	yes	N/A
P87111	ETFD_SCHPO	1, ., 5, ., 5, ., 1	0.5513	0.7317	0.2848	yes	N/A
Q921G7	ETFD_MOUSE	1, ., 5, ., 5, ., 1	0.5094	0.9837	0.3928	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		246
COG0644		396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	4e-32
PRK10015		429	PRK10015, PRK10015, oxidoreductase; Provisional	1e-13
PRK10157		428	PRK10157, PRK10157, putative oxidoreductase FixC;	5e-09
pfam05187		110	pfam05187, ETF_QO, Electron transfer flavoprotein-	0.003

>gnl\|CDD\|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	Back alignment and domain information

 Score =  120 bits (303), Expect = 4e-32
 Identities = 57/162 (35%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 3   IGDFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPF-KEFQRFKTHPAVRPVFEGG 61
             D    G  +++ L +      VG  V LD   P LSPF +  +RFK HPA+R +  GG
Sbjct: 191 PLDVGPGGYGWIFPLGDG--HANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGG 246

Query: 62  KRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121
           K + Y A  + EGG  + P L   G  LVG  AGF+N    +G   A+KSG LAAEA  E
Sbjct: 247 KILEYAAGGIPEGGPASRP-LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAE 305

Query: 122 ALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFH 163
           AL    + ++       YE  ++ S   ++LK +R  +    
Sbjct: 306 ALEGGEEALAE------YERLLRKSLAREDLKSLRLLKLLLR 341

Length = 396

>gnl\|CDD\|182194 PRK10015, PRK10015, oxidoreductase; Provisional	Back alignment and domain information

>gnl\|CDD\|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	Back alignment and domain information

>gnl\|CDD\|218485 pfam05187, ETF_QO, Electron transfer flavoprotein-ubiquinone oxidoreductase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		246
KOG2415\|consensus		621		100.0
PRK10015		429	oxidoreductase; Provisional	100.0
PRK10157		428	putative oxidoreductase FixC; Provisional	100.0
COG0644		396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.95
TIGR02028		398	ChlP geranylgeranyl reductase. This model represen	99.82
PLN00093		450	geranylgeranyl diphosphate reductase; Provisional	99.81
TIGR02023		388	BchP-ChlP geranylgeranyl reductase. This model rep	99.73
COG2440		99	FixX Ferredoxin-like protein [Energy production an	99.43
TIGR02032		295	GG-red-SF geranylgeranyl reductase family. This mo	99.36
PLN02697		529	lycopene epsilon cyclase	99.3
PF04820		454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.2
TIGR01790		388	carotene-cycl lycopene cyclase family protein. Thi	99.14
PRK11445		351	putative oxidoreductase; Provisional	99.12
PLN02463		447	lycopene beta cyclase	99.11
PRK15449		95	ferredoxin-like protein FixX; Provisional	99.07
PRK06185		407	hypothetical protein; Provisional	98.88
PRK09126		392	hypothetical protein; Provisional	98.77
TIGR01988		385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.7
PF01494		356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.61
PRK07045		388	putative monooxygenase; Reviewed	98.6
PRK07333		403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.59
PRK05732		395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.55
PRK08243		392	4-hydroxybenzoate 3-monooxygenase; Validated	98.52
PRK06753		373	hypothetical protein; Provisional	98.51
TIGR01984		382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.45
PRK07364		415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.45
PRK07538		413	hypothetical protein; Provisional	98.34
PRK07608		388	ubiquinone biosynthesis hydroxylase family protein	98.34
PRK08020		391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.28
PRK07494		388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.22
PRK07588		391	hypothetical protein; Provisional	98.16
PRK08163		396	salicylate hydroxylase; Provisional	98.11
PRK08244		493	hypothetical protein; Provisional	98.11
TIGR02360		390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.03
PRK05714		405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.94
PRK06617		374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.86
PF08491		276	SE: Squalene epoxidase; InterPro: IPR013698 This d	97.82
PRK08773		392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.8
PRK08013		400	oxidoreductase; Provisional	97.79
COG0654		387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.74
PRK06996		398	hypothetical protein; Provisional	97.71
PRK08850		405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.67
TIGR01989		437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.59
PRK06183		538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.52
TIGR03219		414	salicylate_mono salicylate 1-monooxygenase. Member	97.51
TIGR01789		370	lycopene_cycl lycopene cyclase. This model represe	97.49
PF05834		374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.44
PRK05868		372	hypothetical protein; Validated	97.39
PF05187		110	ETF_QO: Electron transfer flavoprotein-ubiquinone	97.38
PRK06847		375	hypothetical protein; Provisional	97.32
PRK08849		384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.22
PTZ00367		567	squalene epoxidase; Provisional	97.21
PRK08132		547	FAD-dependent oxidoreductase; Provisional	97.19
PRK06834		488	hypothetical protein; Provisional	96.9
PRK06475		400	salicylate hydroxylase; Provisional	96.86
PLN02985		514	squalene monooxygenase	96.73
PRK06184		502	hypothetical protein; Provisional	96.71
PF00037		24	Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T	96.54
PRK07236		386	hypothetical protein; Provisional	96.53
PRK06126		545	hypothetical protein; Provisional	96.48
PF12797		22	Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450	96.03
PF12837		24	Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450	95.81
PRK08294		634	phenol 2-monooxygenase; Provisional	95.67
PRK12771		564	putative glutamate synthase (NADPH) small subunit;	95.41
PF12800		17	Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450	95.06
PRK08255		765	salicylyl-CoA 5-hydroxylase; Reviewed	94.46
PRK07190		487	hypothetical protein; Provisional	94.38
PLN02927		668	antheraxanthin epoxidase/zeaxanthin epoxidase	94.37
PF13247		98	Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX	92.27
PF14697		59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	91.81
KOG2614\|consensus		420		91.38
COG1146		68	Ferredoxin [Energy production and conversion]	90.87
COG1143		172	NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino	89.9
PF13237		52	Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.	89.64
COG1142		165	HycB Fe-S-cluster-containing hydrogenase component	88.76
PF12838		52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	88.34
PF14697		59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	88.16
TIGR02066		341	dsrB sulfite reductase, dissimilatory-type beta su	87.82
PF13187		55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	87.18
TIGR02179		78	PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta	87.1
PRK09626		103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	86.77
PRK08348		120	NADH-plastoquinone oxidoreductase subunit; Provisi	86.56
TIGR00403		183	ndhI NADH-plastoquinone oxidoreductase subunit I p	86.32
PRK09625		133	porD pyruvate flavodoxin oxidoreductase subunit de	85.88
TIGR02936		91	fdxN_nitrog ferredoxin III, nif-specific. Members	85.87
PRK08348		120	NADH-plastoquinone oxidoreductase subunit; Provisi	85.56
CHL00065		81	psaC photosystem I subunit VII	85.47
KOG3855\|consensus		481		85.42
PRK14028		312	pyruvate ferredoxin oxidoreductase subunit gamma/d	84.71
PF13237		52	Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.	84.65
TIGR01292		300	TRX_reduct thioredoxin-disulfide reductase. This m	84.49
PRK06273		165	ferredoxin; Provisional	84.34
PRK12387		180	formate hydrogenlyase complex iron-sulfur subunit;	84.06
PRK08222		181	hydrogenase 4 subunit H; Validated	84.06
COG1145		99	NapF Ferredoxin [Energy production and conversion]	83.73
TIGR02936		91	fdxN_nitrog ferredoxin III, nif-specific. Members	83.41
COG2509		486	Uncharacterized FAD-dependent dehydrogenases [Gene	83.09
PRK09624		105	porD pyuvate ferredoxin oxidoreductase subunit del	82.77
TIGR01971		122	NuoI NADH-quinone oxidoreductase, chain I. This mo	81.93
PLN00071		81	photosystem I subunit VII; Provisional	81.53
PRK09625		133	porD pyruvate flavodoxin oxidoreductase subunit de	81.47
TIGR03048		80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	81.44
PF12798		15	Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450	81.12
TIGR00403		183	ndhI NADH-plastoquinone oxidoreductase subunit I p	81.07
PRK05888		164	NADH dehydrogenase subunit I; Provisional	81.01
PRK12387		180	formate hydrogenlyase complex iron-sulfur subunit;	80.78
PRK05888		164	NADH dehydrogenase subunit I; Provisional	80.43
COG1144		91	Pyruvate:ferredoxin oxidoreductase and related 2-o	80.21
PRK09853		1019	putative selenate reductase subunit YgfK; Provisio	80.21
COG1453		391	Predicted oxidoreductases of the aldo/keto reducta	80.17

>KOG2415\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.6e-79  Score=566.47  Aligned_cols=240  Identities=70%  Similarity=1.254  Sum_probs=225.7

Q ss_pred             CCCCCCeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCcccc
Q psy2242           5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTF   84 (246)
Q Consensus         5 ~~~~~GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~   84 (246)
                      +.++|||+|+||+.  |..|+||+|+.+||.||+++|+++||++|+||.|++.||||++++|+||+++|||||++|++++
T Consensus       306 ~~~tYGGsFlYh~~--d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F  383 (621)
T KOG2415|consen  306 DNDTYGGSFLYHFN--DPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF  383 (621)
T ss_pred             cCCccCceeEEEcC--CCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc
Confidence            45799999999999  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhhh
Q psy2242          85 PGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHS  164 (246)
Q Consensus        85 ~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~~  164 (246)
                      ||.+||||+|||+|..+++|.|+||+|||+|||+|+++|...+.+....-.+..|++.+++||++|||+.+||+++.|+.
T Consensus       384 PGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~  463 (621)
T KOG2415|consen  384 PGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHG  463 (621)
T ss_pred             CCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCccccc
Confidence            99999999999999999999999999999999999999976653321012367999999999999999999999999999


Q ss_pred             ccccHHHHHHHHH-HHHhcCCCCcccccC---------------------------------------------------
Q psy2242         165 KLGLWGGLAYSGA-SIMMKGIEPWTFKWN---------------------------------------------------  192 (246)
Q Consensus       165 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~---------------------------------------------------  192 (246)
                      ++|.|+||+++++ .++++|+.||||+|.                                                   
T Consensus       464 ~lG~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l~  543 (621)
T KOG2415|consen  464 KLGLYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLR  543 (621)
T ss_pred             ccccccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeeec
Confidence            9999999999999 889999999999998                                                   


Q ss_pred             -----------------------ceEEEEeCCCC-CccceEEecccccccccccccCCCCCceeeCCCCCCCCCCCCC
Q psy2242         193 -----------------------SVYEYVPLEDG-SGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM  246 (246)
Q Consensus       193 -----------------------~vy~~~~~~~~-~~~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~gg~g~~y~~~  246 (246)
                                             |||||++||.+ .++|||||+||||||||||||||.|||+|++||||+||.|+.|
T Consensus       544 ~~~ip~~~nf~~y~gpE~rfCPAgVYEyV~dE~~~~~krlqINaQNCiHCKtCDIKdP~QnI~W~vPeGGgGP~Y~~m  621 (621)
T KOG2415|consen  544 DDDIPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPKYTLM  621 (621)
T ss_pred             CCCcchhcCcccccChhhccCCccceeecccccCCCcceEEEccccceecccccccCcccCceeeCcCCCCCCCcccC
Confidence                                   99999988765 4579999999999999999999999999999999999999988

>PRK10015 oxidoreductase; Provisional	Back alignment and domain information

>PRK10157 putative oxidoreductase FixC; Provisional	Back alignment and domain information

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]	Back alignment and domain information

>TIGR02028 ChlP geranylgeranyl reductase	Back alignment and domain information

>PLN00093 geranylgeranyl diphosphate reductase; Provisional	Back alignment and domain information

>TIGR02023 BchP-ChlP geranylgeranyl reductase	Back alignment and domain information

>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]	Back alignment and domain information

>TIGR02032 GG-red-SF geranylgeranyl reductase family	Back alignment and domain information

>PLN02697 lycopene epsilon cyclase	Back alignment and domain information

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan	Back alignment and domain information

>TIGR01790 carotene-cycl lycopene cyclase family protein	Back alignment and domain information

>PRK11445 putative oxidoreductase; Provisional	Back alignment and domain information

>PLN02463 lycopene beta cyclase	Back alignment and domain information

>PRK15449 ferredoxin-like protein FixX; Provisional	Back alignment and domain information

>PRK06185 hypothetical protein; Provisional	Back alignment and domain information

>PRK09126 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family	Back alignment and domain information

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways	Back alignment and domain information

>PRK07045 putative monooxygenase; Reviewed	Back alignment and domain information

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional	Back alignment and domain information

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	Back alignment and domain information

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated	Back alignment and domain information

>PRK06753 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase	Back alignment and domain information

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	Back alignment and domain information

>PRK07538 hypothetical protein; Provisional	Back alignment and domain information

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional	Back alignment and domain information

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed	Back alignment and domain information

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional	Back alignment and domain information

>PRK07588 hypothetical protein; Provisional	Back alignment and domain information

>PRK08163 salicylate hydroxylase; Provisional	Back alignment and domain information

>PRK08244 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase	Back alignment and domain information

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional	Back alignment and domain information

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	Back alignment and domain information

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria	Back alignment and domain information

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated	Back alignment and domain information

>PRK08013 oxidoreductase; Provisional	Back alignment and domain information

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	Back alignment and domain information

>PRK06996 hypothetical protein; Provisional	Back alignment and domain information

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated	Back alignment and domain information

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6	Back alignment and domain information

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated	Back alignment and domain information

>TIGR03219 salicylate_mono salicylate 1-monooxygenase	Back alignment and domain information

>TIGR01789 lycopene_cycl lycopene cyclase	Back alignment and domain information

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins	Back alignment and domain information

>PRK05868 hypothetical protein; Validated	Back alignment and domain information

>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane	Back alignment and domain information

>PRK06847 hypothetical protein; Provisional	Back alignment and domain information

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional	Back alignment and domain information

>PTZ00367 squalene epoxidase; Provisional	Back alignment and domain information

>PRK08132 FAD-dependent oxidoreductase; Provisional	Back alignment and domain information

>PRK06834 hypothetical protein; Provisional	Back alignment and domain information

>PRK06475 salicylate hydroxylase; Provisional	Back alignment and domain information

>PLN02985 squalene monooxygenase	Back alignment and domain information

>PRK06184 hypothetical protein; Provisional	Back alignment and domain information

>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PRK07236 hypothetical protein; Provisional	Back alignment and domain information

>PRK06126 hypothetical protein; Provisional	Back alignment and domain information

>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PRK08294 phenol 2-monooxygenase; Provisional	Back alignment and domain information

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional	Back alignment and domain information

>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed	Back alignment and domain information

>PRK07190 hypothetical protein; Provisional	Back alignment and domain information

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase	Back alignment and domain information

>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B	Back alignment and domain information

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B	Back alignment and domain information

>KOG2614\|consensus	Back alignment and domain information

>COG1146 Ferredoxin [Energy production and conversion]	Back alignment and domain information

>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	Back alignment and domain information

>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A	Back alignment and domain information

>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]	Back alignment and domain information

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B	Back alignment and domain information

>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit	Back alignment and domain information

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J	Back alignment and domain information

>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family	Back alignment and domain information

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed	Back alignment and domain information

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional	Back alignment and domain information

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein	Back alignment and domain information

>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific	Back alignment and domain information

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional	Back alignment and domain information

>CHL00065 psaC photosystem I subunit VII	Back alignment and domain information

>KOG3855\|consensus	Back alignment and domain information

>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional	Back alignment and domain information

>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A	Back alignment and domain information

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase	Back alignment and domain information

>PRK06273 ferredoxin; Provisional	Back alignment and domain information

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK08222 hydrogenase 4 subunit H; Validated	Back alignment and domain information

>COG1145 NapF Ferredoxin [Energy production and conversion]	Back alignment and domain information

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific	Back alignment and domain information

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]	Back alignment and domain information

>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I	Back alignment and domain information

>PLN00071 photosystem I subunit VII; Provisional	Back alignment and domain information

>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC	Back alignment and domain information

>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein	Back alignment and domain information

>PRK05888 NADH dehydrogenase subunit I; Provisional	Back alignment and domain information

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK05888 NADH dehydrogenase subunit I; Provisional	Back alignment and domain information

>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]	Back alignment and domain information

>PRK09853 putative selenate reductase subunit YgfK; Provisional	Back alignment and domain information

>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		246
2gmh_A		584	Structure Of Porcine Electron Transfer Flavoprotein		3e-73

>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein- Ubiquinone Oxidoreductase In Complexed With Ubiquinone Length = 584

Back alignment and structure

Iteration: 1

Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/318 (48%), Positives = 181/318 (56%), Gaps = 76/318 (23%) Query: 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64 D +TYGGSFLYHLNE PL+A+GFVVGLDY NPYLSPF+EFQR+K HP+++P EGGKRI Sbjct: 267 DRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRI 326 Query: 65 AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMXXXXXXXXXXX 124 AYGARALNEGG Q+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG Sbjct: 327 AYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLT 386 Query: 125 XXGDEVST-GLEPKSYEDKIKSS---------------------------------WIYK 150 + T GL YED +K+S WI++ Sbjct: 387 SENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGILGVYGGMIYTGIFYWIFR 446 Query: 151 ---------------ELKEVRNCRPSFHSK------LGLWGGLAYSGASIMMKGIEPWTF 189 +LK ++C P + K L +A SG + T Sbjct: 447 GMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTL 506 Query: 190 KWNSV---------------------YEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQ 228 K +SV YE+VPLE G G RLQINAQNC+HCKTCDIKDP+Q Sbjct: 507 KDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQ 566 Query: 229 NINWVVPEGGGGPAYNGM 246 NINWVVPEGGGGPAYNGM Sbjct: 567 NINWVVPEGGGGPAYNGM 584 Database: pdbaa

PyMOL of 2gmh

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		246
2gmh_A		584	Electron transfer flavoprotein-ubiquinone oxidored	2e-75
2gmh_A		584	Electron transfer flavoprotein-ubiquinone oxidored	4e-36
3atr_A		453	Conserved archaeal protein; saturating double bond	4e-14
3cgv_A		397	Geranylgeranyl reductase related protein; NP_39399	5e-09
3nix_A		421	Flavoprotein/dehydrogenase; structural genomics, P	6e-07

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584	Back alignment and structure

 Score =  238 bits (608), Expect = 2e-75
 Identities = 120/190 (63%), Positives = 147/190 (77%), Gaps = 2/190 (1%)

Query: 5   DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
           D +TYGGSFLYHLNE  PL+A+GFVVGLDY NPYLSPF+EFQR+K HP+++P  EGGKRI
Sbjct: 267 DRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRI 326

Query: 65  AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124
           AYGARALNEGG Q+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG LAAE+ +  L 
Sbjct: 327 AYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLT 386

Query: 125 EAGDEVST-GLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGA-SIMMK 182
               +  T GL    YED +K+SW++KEL  VRN RPS H  LG++GG+ Y+G    + +
Sbjct: 387 SENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGILGVYGGMIYTGIFYWIFR 446

Query: 183 GIEPWTFKWN 192
           G+EPWT K  
Sbjct: 447 GMEPWTLKHK 456

PyMOL of 2gmh

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584	Back alignment and structure

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453	Back alignment and structure

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		246
2gmh_A		584	Electron transfer flavoprotein-ubiquinone oxidored	100.0
3oz2_A		397	Digeranylgeranylglycerophospholipid reductase; str	99.74
3nix_A		421	Flavoprotein/dehydrogenase; structural genomics, P	99.57
3cgv_A		397	Geranylgeranyl reductase related protein; NP_39399	99.54
3atr_A		453	Conserved archaeal protein; saturating double bond	99.51
3e1t_A		512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.34
3i3l_A		591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.22
1k0i_A		394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.85
3rp8_A		407	Flavoprotein monooxygenase; FAD-binding protein, o	98.81
2x3n_A		399	Probable FAD-dependent monooxygenase; oxidoreducta	98.78
2weu_A		511	Tryptophan 5-halogenase; regioselectivity, antifun	98.67
2e4g_A		550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.59
2aqj_A		538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.55
3c4a_A		381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.48
3alj_A		379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.46
3fmw_A		570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.37
2pyx_A		526	Tryptophan halogenase; structural genomics, JOI fo	98.37
2xdo_A		398	TETX2 protein; tetracycline degradation, tigecycli	98.34
3c96_A		410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.3
3ihg_A		535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.26
2qa1_A		500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.23
2qa2_A		499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.2
1pn0_A		665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.02
2dkh_A		639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.02
2vou_A		397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.98
4hb9_A		412	Similarities with probable monooxygenase; flavin,	97.93
3ihm_A		430	Styrene monooxygenase A; rossman fold, anti-parall	97.92
2r0c_A		549	REBC; flavin adenine dinucleotide, monooxygenase,	97.57
3kkj_A		336	Amine oxidase, flavin-containing; oxidoreductase,	97.54
3fpz_A		326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.06
7fd1_A		106	FD1, protein (7-Fe ferredoxin I); electron transpo	94.59
1yvv_A		336	Amine oxidase, flavin-containing; oxidoreductase,	93.67
1jb0_C		80	Photosystem I iron-sulfur center; membrane protein	93.45
1xer_A		103	Ferredoxin; electron transport, iron-sulfur, dupli	93.3
1dwl_A		59	Ferredoxin I; electron transfer, model, heteronucl	93.24
2v2k_A		105	Ferredoxin; iron, transport, iron-sulfur, mycobact	93.12
1dwl_A		59	Ferredoxin I; electron transfer, model, heteronucl	93.04
1xer_A		103	Ferredoxin; electron transport, iron-sulfur, dupli	92.47
1h98_A		78	Ferredoxin; electron transport, thermophilic, iron	92.27
2fdn_A		55	Ferredoxin; electron transport, iron-sulfur, 4Fe-4	92.17
3fbs_A		297	Oxidoreductase; structural genomics, PSI2, MCSG, p	91.52
1dax_A		64	Ferredoxin I; electron transport, electron-transfe	91.36
3eun_A		82	Ferredoxin; electron transport, [4Fe-4S] cluster,	90.94
1bc6_A		77	7-Fe ferredoxin; electron transport, iron-sulfur;	90.76
1rof_A		60	Ferredoxin; electron transport, iron-sulfur; NMR {	90.59
1jb0_C		80	Photosystem I iron-sulfur center; membrane protein	90.23
1f2g_A		58	Ferredoxin II; electron transport, FDII desulfovib	90.1
4gcm_A		312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	89.86
2zvs_A		85	Uncharacterized ferredoxin-like protein YFHL; elec	89.83
3eun_A		82	Ferredoxin; electron transport, [4Fe-4S] cluster,	89.81
1iqz_A		81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	89.7
1sj1_A		66	Ferredoxin; thermostability, iron-sulfur cluster,	89.62
3itj_A		338	Thioredoxin reductase 1; disulfide B flavoprotein,	89.3
1rgv_A		80	Ferredoxin; electron transport; 2.90A {Thauera aro	89.27
3mm5_B		366	Sulfite reductase, dissimilatory-type subunit BET;	89.24
3f8d_A		323	Thioredoxin reductase (TRXB-3); redox protein, nuc	89.18
2fdn_A		55	Ferredoxin; electron transport, iron-sulfur, 4Fe-4	89.08
4a5l_A		314	Thioredoxin reductase; oxidoreductase, redox metab	88.93
2fgo_A		82	Ferredoxin; allochromatium vinosum, [4Fe-4S] clust	88.77
3i9v_9		182	NADH-quinone oxidoreductase subunit 9; electron tr	88.67
1ryi_A		382	Glycine oxidase; flavoprotein, protein-inhibitor c	88.67
1jnr_B		150	Adenylylsulfate reductase; oxidoreductase; HET: FA	88.43
3gyx_B		166	Adenylylsulfate reductase; oxidoreductase; HET: FA	88.09
1ti6_B		274	Pyrogallol hydroxytransferase small subunit; molyb	87.98
4fk1_A		304	Putative thioredoxin reductase; structural genomic	87.65
3or1_B		386	Sulfite reductase beta; dissimilatory sulfite redu	86.61
3r9u_A		315	Thioredoxin reductase; structural genomics, center	85.79
2vpz_B		195	NRFC protein; oxidoreductase, molybdopterin guanin	85.73
4dgk_A		501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	85.65
2fgo_A		82	Ferredoxin; allochromatium vinosum, [4Fe-4S] clust	85.55
1trb_A		320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	85.29
1f2g_A		58	Ferredoxin II; electron transport, FDII desulfovib	84.98
1bc6_A		77	7-Fe ferredoxin; electron transport, iron-sulfur;	84.58
2ywl_A		180	Thioredoxin reductase related protein; uncharacter	84.57
3cty_A		319	Thioredoxin reductase; FAD, oxidoreductase, flavin	84.39
1fl2_A		310	Alkyl hydroperoxide reductase subunit F; reactive	83.98
3or1_A		437	Sulfite reductase alpha; dissimilatory sulfite red	83.85
7fd1_A		106	FD1, protein (7-Fe ferredoxin I); electron transpo	83.85
3mm5_A		418	Sulfite reductase, dissimilatory-type subunit ALP;	82.83
3lzw_A		332	Ferredoxin--NADP reductase 2; ferredoxin reductase	82.74
1vdc_A		333	NTR, NADPH dependent thioredoxin reductase; hypoth	82.41
1rgv_A		80	Ferredoxin; electron transport; 2.90A {Thauera aro	81.98
3i9v_9		182	NADH-quinone oxidoreductase subunit 9; electron tr	81.52
1rof_A		60	Ferredoxin; electron transport, iron-sulfur; NMR {	81.37
1kqf_B		294	FDH-N beta S, formate dehydrogenase, nitrate-induc	81.37
2q7v_A		325	Thioredoxin reductase; rossman fold, FAD, flavopro	81.36
1h98_A		78	Ferredoxin; electron transport, thermophilic, iron	81.35
2q0l_A		311	TRXR, thioredoxin reductase; bacterial thiredoxin	81.24
2v2k_A		105	Ferredoxin; iron, transport, iron-sulfur, mycobact	80.64

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*	Back alignment and structure

Probab=100.00  E-value=4.3e-50  Score=390.84  Aligned_cols=237  Identities=69%  Similarity=1.276  Sum_probs=211.9

Q ss_pred             CCCCeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCccccCC
Q psy2242           7 NTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPG   86 (246)
Q Consensus         7 ~~~GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G   86 (246)
                      .++||+|+|+.+.++++++||+++..++.++..+++++|++|++||.++++|++++.++|+++.++.++++.+|+++.+|
T Consensus       269 ~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~l~~~~~~p~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r  348 (584)
T 2gmh_A          269 HTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPG  348 (584)
T ss_dssp             TSCEEEEEEECCSSSCEEEEEEEEETTCCCTTCCHHHHHHHHTTSTTTHHHHTTCEEEEEEEEEEECCGGGGCCCCEETT
T ss_pred             CcCCceEEEEecCCCCeEEEEEEEecCcccccCChHHHHHHHHhChHHHHHhCCCeEEEecceEccCCCcccCCccccCC
Confidence            46789999987632689999999988877777789999999999999999999999999999999999998889999999


Q ss_pred             EEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC-CCCCCCCc---hHHHHHHHHHhhchHHHHHHHhhhhhh
Q psy2242          87 GCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG-DEVSTGLE---PKSYEDKIKSSWIYKELKEVRNCRPSF  162 (246)
Q Consensus        87 ~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd-~s~~~~~~---L~~Y~~~~~~s~~~~el~~~r~~~~~~  162 (246)
                      ++||||||++++|+.++|+++||++|+++|+++.++++.++ ..   .++   |+.|++.++++|+.+||+.+|+++++|
T Consensus       349 v~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~~~---~~a~~~L~~Ye~~r~~~~v~~~l~~~r~~~~~~  425 (584)
T 2gmh_A          349 GLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQS---KTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSC  425 (584)
T ss_dssp             EEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCC---SSSSCCCTHHHHHHHTSHHHHHHHHTTTTTGGG
T ss_pred             EEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCCcch---hhhhhhHHHHHHHHHHhHHHHHHHHHhChhHHH
Confidence            99999999999999999999999999999999999997664 32   133   899999999999999999999999999


Q ss_pred             hhccccHHHHHHHHH-HHHhcCCCCcccccC-------------------------------------------------
Q psy2242         163 HSKLGLWGGLAYSGA-SIMMKGIEPWTFKWN-------------------------------------------------  192 (246)
Q Consensus       163 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~-------------------------------------------------  192 (246)
                      ++.||.|++++++++ +|+.+|+.||||+|.                                                 
T Consensus       426 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~  505 (584)
T 2gmh_A          426 HGILGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLT  505 (584)
T ss_dssp             GSTTTHHHHHHHHHHHTTTTTTCCSCCCCCCSCGGGCCCCGGGSCCCCCCCCCSSSSCCHHHHHHTTTCBCCSSSCCSEE
T ss_pred             HHhhccHHHHHHHHHHHHHcCCCCCCccCCCCCCchhhhhHHhcCCCCCCCccccccccccchhhhccccccCCCCCeEE
Confidence            855699999999999 788889999999875                                                 


Q ss_pred             -------------------------ceEEEEeCCCCCccceEEecccccccccccccCCCCCceeeCCCCCCCCCCCCC
Q psy2242         193 -------------------------SVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM  246 (246)
Q Consensus       193 -------------------------~vy~~~~~~~~~~~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~gg~g~~y~~~  246 (246)
                                               +|||+++++++...+++||++||||||||+|+||++||+|++||||+||+|++|
T Consensus       506 ~~d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~i~~~~p~gg~g~~~~~~  584 (584)
T 2gmh_A          506 LKDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM  584 (584)
T ss_dssp             ESSTTHHHHTHHHHHCCTHHHHCTTCCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCEEECCCSTTCBCCCSCC
T ss_pred             EcCcccchhhchhhhcchhhhcCChhhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCCceeECCCCCCCcCccCC
Confidence                                     999997543321238999999999999999999999999999999999999998

PyMOL of 2gmh

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}	Back alignment and structure

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}	Back alignment and structure

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*	Back alignment and structure

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}	Back alignment and structure

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}	Back alignment and structure

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...	Back alignment and structure

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*	Back alignment and structure

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}	Back alignment and structure

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*	Back alignment and structure

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A	Back alignment and structure

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*	Back alignment and structure

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}	Back alignment and structure

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*	Back alignment and structure

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}	Back alignment and structure

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}	Back alignment and structure

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*	Back alignment and structure

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*	Back alignment and structure

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}	Back alignment and structure

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}	Back alignment and structure

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}	Back alignment and structure

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*	Back alignment and structure

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*	Back alignment and structure

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2	Back alignment and structure

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}	Back alignment and structure

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}	Back alignment and structure

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*	Back alignment and structure

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}	Back alignment and structure

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}	Back alignment and structure

>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...	Back alignment and structure

>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*	Back alignment and structure

>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A	Back alignment and structure

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1	Back alignment and structure

>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}	Back alignment and structure

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1	Back alignment and structure

>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A	Back alignment and structure

>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2	Back alignment and structure

>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A	Back alignment and structure

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}	Back alignment and structure

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A	Back alignment and structure

>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A	Back alignment and structure

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A	Back alignment and structure

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A	Back alignment and structure

>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*	Back alignment and structure

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A	Back alignment and structure

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}	Back alignment and structure

>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}	Back alignment and structure

>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A	Back alignment and structure

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*	Back alignment and structure

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A	Back alignment and structure

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*	Back alignment and structure

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1	Back alignment and structure

>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*	Back alignment and structure

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*	Back alignment and structure

>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A	Back alignment and structure

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*	Back alignment and structure

>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}	Back alignment and structure

>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*	Back alignment and structure

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*	Back alignment and structure

>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*	Back alignment and structure

>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}	Back alignment and structure

>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*	Back alignment and structure

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*	Back alignment and structure

>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*	Back alignment and structure

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}	Back alignment and structure

>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*	Back alignment and structure

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}	Back alignment and structure

>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}	Back alignment and structure

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*	Back alignment and structure

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A	Back alignment and structure

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A	Back alignment and structure

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*	Back alignment and structure

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}	Back alignment and structure

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5	Back alignment and structure

>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*	Back alignment and structure

>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...	Back alignment and structure

>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*	Back alignment and structure

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*	Back alignment and structure

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*	Back alignment and structure

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1	Back alignment and structure

>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*	Back alignment and structure

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A	Back alignment and structure

>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*	Back alignment and structure

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}	Back alignment and structure

>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2	Back alignment and structure

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*	Back alignment and structure

>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		246
d2gmha1		380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	3e-34
d2gmha2		99	d.16.1.8 (A:237-335) Electron transfer flavoprotei	2e-28
d2gmha3		102	d.58.1.6 (A:483-584) Electron transfer flavoprotei	9e-28
d2gjca1		311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.001

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  124 bits (312), Expect = 3e-34
 Identities = 65/118 (55%), Positives = 85/118 (72%), Gaps = 2/118 (1%)

Query: 75  GLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL-AEAGDEVSTG 133
           G Q+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG LAAE+ +  L +E     + G
Sbjct: 235 GFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIG 294

Query: 134 LEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGA-SIMMKGIEPWTFK 190
           L    YED +K+SW++KEL  VRN RPS H  LG++GG+ Y+G    + +G+EPWT K
Sbjct: 295 LHVTEYEDNLKNSWVWKELYSVRNIRPSCHGILGVYGGMIYTGIFYWIFRGMEPWTLK 352

PyMOL of d2gmha1

>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 99	Back information, alignment and structure

>d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 102	Back information, alignment and structure

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		246
d2gmha1		380	Electron transfer flavoprotein-ubiquinone oxidored	99.96
d2gmha3		102	Electron transfer flavoprotein-ubiquinone oxidored	99.93
d2gmha2		99	Electron transfer flavoprotein-ubiquinone oxidored	99.81
d1pn0a1		360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.15
d1b5qa1		347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.93
d2gjca1		311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	96.62
d7fd1a_		106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	95.01
d1h98a_		77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	94.61
d1bc6a_		77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	94.07
d1hfel2		85	Fe-only hydrogenase larger subunit, N-domain {Desu	94.04
d3c7bb1		65	DsrB insert domain {Archaeoglobus fulgidus [TaxId:	93.96
d1vlfn2		195	Transhydroxylase beta subunit, BthL, N-terminal do	93.9
d1xera_		103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	93.81
d1seza1		373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.73
d2fug91		154	NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus	93.19
d1dura_		55	Ferredoxin II {Peptostreptococcus asaccharolyticus	92.66
d2fdna_		55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	92.53
d2fdna_		55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	92.39
d1rgva_		80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	92.32
d1neka2		330	Succinate dehydogenase {Escherichia coli [TaxId: 5	91.75
d1xera_		103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	91.58
d1blua_		80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	91.2
d1jb0c_		80	Photosystem I iron-sulfur protein PsaC {Synechococ	91.04
d3c8ya3		83	Fe-only hydrogenase, second domain {Clostridium pa	90.63
d1kqfb1		244	Formate dehydrogenase N, iron-sulfur (beta) subuni	90.25
d1jnrb_		149	Adenylylsulfate reductase B subunit {Archaeon Arch	89.85
d1jb0c_		80	Photosystem I iron-sulfur protein PsaC {Synechococ	89.44
d1vjwa_		59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	88.9
d1hfel2		85	Fe-only hydrogenase larger subunit, N-domain {Desu	88.61
d2c42a5		117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	88.45
d2dw4a2		449	Lysine-specific histone demethylase 1, LSD1 {Human	88.36
d1d7ya1		183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	87.71
d3c96a1		288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	87.01
d2c42a5		117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	85.99
d1blua_		80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	85.61
d1dura_		55	Ferredoxin II {Peptostreptococcus asaccharolyticus	85.06
d1fxra_		64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	84.12
d1rgva_		80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	82.21
d1q1ra1		185	Putidaredoxin reductase {Pseudomonas putida [TaxId	82.13
d1y5ib1		509	Respiratory nitrate reductase 1 beta chain {Escher	81.9
d1fxra_		64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	81.62
d1sj1a_		66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	81.42
d1vjwa_		59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	80.84

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=8.5e-30  Score=234.03  Aligned_cols=126  Identities=52%  Similarity=0.992  Sum_probs=115.0

Q ss_pred             cceeeecCCCccCCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCC-CCCchHHHHHHHHH
Q psy2242          67 GARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVS-TGLEPKSYEDKIKS  145 (246)
Q Consensus        67 ~a~~ip~gg~~~~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~-~~~~L~~Y~~~~~~  145 (246)
                      ..+.++++|++++|++++||++||||||||+||++++|||+||+||++|||+|+++|++++.+.. ....++.|++.+++
T Consensus       227 ~~~~~~~~G~~sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~~~~~~~~~~~~~~y~~~~~~  306 (380)
T d2gmha1         227 RANCEPQGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKN  306 (380)
T ss_dssp             TTTSCCCCGGGGCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHT
T ss_pred             ccccccccccccccccccCCeeEEeccccccchhhcCCeeeeeccHHHHHHHHHHHHHcCCcccchhhhhhhhHHHHHHh
Confidence            45677889999999999999999999999999999999999999999999999999999887631 12347889999999


Q ss_pred             hhchHHHHHHHhhhhhhhhccccHHHHHHHHH-HHHhcCCCCcccccC
Q psy2242         146 SWIYKELKEVRNCRPSFHSKLGLWGGLAYSGA-SIMMKGIEPWTFKWN  192 (246)
Q Consensus       146 s~~~~el~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~  192 (246)
                      ||+++||+++||+++.|++++|+|.++++.++ +++++|+.||||+|.
T Consensus       307 s~~~~eL~~~rn~~~~~~~~~g~~~g~~~~~~~~~~~~g~~p~tl~~~  354 (380)
T d2gmha1         307 SWVWKELYSVRNIRPSCHGILGVYGGMIYTGIFYWIFRGMEPWTLKHK  354 (380)
T ss_dssp             SHHHHHHHHTTTTTGGGGSTTTHHHHHHHHHHHTTTTTTCCSCCCCCC
T ss_pred             hHHHHHHHHhhCCCHHHHhhchHHHHHHHHHHHHHHhCCCCCccCCCC
Confidence            99999999999999999877999999999999 789999999999884

PyMOL of d2gmha1

>d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}	Back information, alignment and structure

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	Back information, alignment and structure

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}	Back information, alignment and structure

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	Back information, alignment and structure

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}	Back information, alignment and structure

>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}	Back information, alignment and structure

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}	Back information, alignment and structure

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}	Back information, alignment and structure

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}	Back information, alignment and structure

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	Back information, alignment and structure

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	Back information, alignment and structure

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}	Back information, alignment and structure

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}	Back information, alignment and structure

>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}	Back information, alignment and structure

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}	Back information, alignment and structure

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	Back information, alignment and structure

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}	Back information, alignment and structure

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}	Back information, alignment and structure

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}	Back information, alignment and structure

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}	Back information, alignment and structure

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure