Psyllid ID: psy2272

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNLYLQMHMSKFPWFSIHFKLSFLKKVGTVSSIQEARPSYTLQYQNSAEVSYLCKGALLKKVLNSKNIAGGINKRFFKNRFARGNYNCQGLIVPKEDRIGKNQPFQENKNLKRVIRHLLAPKLDSSDTLHLDNWISEEYQLLSYRPEGRQDRKKPAIPREQKFRLEEQSVE
Secondary Structure (PSIPRED)
cccccEEEEEEccccEEEEEEccccccEEEEEcccEEEEEccccccccEEEEEEccHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccccccccEEEcccccccEEEEEEcHHHHHHcccccHHccccccEEEEEccccHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccEEEEcccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEcccEEEEEEccccEEEEEEEcccEEEEEccHcccccccEEEEccHHHHHHHHHccccccccEEccccccccccccccEEEccccccccccccccccEEEEEccccEEEEEEccHHHHHHcccHcHHHHcccccHEEEcccHHHHHHHHHHHHHHHHccHcccccHcHHHHHHHccccccccccEEEccccccccccccHHcHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccHHcccEEEccccc
Coil and Loop (DISEMBL)
mlgngrleamcfdgtKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTpdearnlktygefpetvrindtvtfveegydediefgdeisddeegnavDNLYLQMHmskfpwfsiHFKLSFLKKVgtvssiqearpsytlqyqnsaEVSYLCKGALLKKVlnskniagginkRFFKnrfargnyncqglivpkedrigknqpfqenKNLKRVIRHLlapkldssdtlhldnWISEEYQllsyrpegrqdrkkpaipreqkFRLEEQSVE
Flexible Loop (DISEMBL)
mlgngrleamcfdgtKRLChirgklrkkvwinQGDIILIGLRDYQDAKADVILKytpdearnlktygefpetvrindTVTFVEEGYDEDIEFGDEISDDEEGNAVDNLYLQMHMSKFPWFSIHFKLSFLKKVGTVSSIQEARPSYTLQYQNSAEVSYLCKGALLKKVlnskniagginKRFFKNRFARGNYNCQGlivpkedrigknqpfqenknlKRVIRHLLApkldssdtlhldNWISEEYQllsyrpegrqdrkkpaipreqkfrleeqsve
Low Complexity Region (SEG)
MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNLYLQMHMSKFPWFSIHFKLSFLKKVGTVSSIQEARPSYTLQYQNSAEVSYLCKGALLKKVLNSKNIAGGINKRFFKNRFARGNYNCQGLIVPKEDRIGKNQPFQENKNLKRVIRHLLAPKLDSSDTLHLDNWISEEYQLLSYRPEGRQDRKKPAIPREQKFRLEEQSVE
Disordered region (IsUnstruct)
******LEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNLYLQMHMSKFPWFSIHFKLSFLKKVGTVSSIQEARPSYTLQYQNSAEVSYLCKGALLKKVLNSKNIAGGINKRFFKNRFARGNYNCQGLIVPKEDRIG********KNLKRVIRHLLAPKLDSSDTLHLDNWISEEYQLLS****************************
Disordered Region (DISOPRED)
MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEI**********NLYLQMHMSKFPWFSIHFKLSFLKKVGTVSSIQEARPSYTLQYQNSAEVSYLCKGALLKKVLNSKNIAGGINKRFFKNRFARGNYNCQGLIVPKEDR***********NLKRVIRHLLAPKLDSSDTLHLDNWISEEYQL******************************
Disordered Region (DISEMBL)
MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNLYLQMHMSKFPWFSIHFKLSFLKKVGTVSSIQEARPSYTLQYQNSAEVSYLCKGALLKKVLNSKNIAGGINKRFFKNRFARGNYNCQGLIVPKEDRIGKNQPFQENKNLKRVIRHLLAPKLDSSDTLHLDNWISEEYQLLSYRP*********AIPREQKFRLEEQSVE
Disordered Region (DISPRO)
***NGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNLYLQMHMSKFPWFSIHFKLSFLKKVGTVSSIQEARPSYTLQYQNSAEVSYLCKGALLKKVLNSKNIAGGINKRFFKNRFARGNYNCQGLIVPKEDRIGKNQPFQENKNLKRVIRHLLAPKLDSSDTLHLDNWISEEYQLLSYRPEGR*DRKKPAIP**QK**LE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNLYLQMHMSKFPWFSIHFKLSFLKKVGTVSSIQEARPSYTLQYQNSAEVSYLCKGALLKKVLNSKNIAGGINKRFFKNRFARGNYNCQGLIVPKEDRIGKNQPFQENKNLKRVIRHLLAPKLDSSDTLHLDNWISEEYQLLSYRPEGRQDRKKPAIPREQKFRLEEQSVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q5RA42	144	Eukaryotic translation in	yes	N/A	0.329	0.631	0.760	2e-34
Q8BMJ3	144	Eukaryotic translation in	yes	N/A	0.329	0.631	0.760	2e-34
P47813	144	Eukaryotic translation in	yes	N/A	0.329	0.631	0.760	2e-34
Q6VV72	144	Eukaryotic translation in	yes	N/A	0.329	0.631	0.760	3e-34
Q60872	144	Eukaryotic translation in	yes	N/A	0.329	0.631	0.760	3e-34
O14602	144	Eukaryotic translation in	yes	N/A	0.329	0.631	0.75	5e-34
Q6GVM3	144	Eukaryotic translation in	yes	N/A	0.329	0.631	0.739	7e-34
P55877	138	Eukaryotic translation in	yes	N/A	0.333	0.666	0.731	5e-33
Q54YJ6	141	Eukaryotic translation in	yes	N/A	0.293	0.574	0.790	1e-31
P47814	144	Eukaryotic translation in	no	N/A	0.329	0.631	0.728	1e-31

>sp|Q5RA42|IF1AX_PONAB Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEF 92
           R+LK YGE PE  +IN+T TF   G D++I+F
Sbjct: 101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF 131

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
Pongo abelii (taxid: 9601)

>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEF 92
           R+LK YGE PE  +IN+T TF   G D++I+F
Sbjct: 101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF 131

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Mus musculus (taxid: 10090)

>sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEF 92
           R+LK YGE PE  +IN+T TF   G D++I+F
Sbjct: 101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF 131

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Homo sapiens (taxid: 9606)

>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG +RLCHIRGKLRKKVWIN  DIILIGLRDYQD KADVILKY  DEA
Sbjct: 41  MLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEF 92
           R+LK YGE PE  +IN+T TF   G D++I+F
Sbjct: 101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF 131

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Rattus norvegicus (taxid: 10116)

>sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG +RLCHIRGKLRKKVWIN  DIILIGLRDYQD KADVILKY  DEA
Sbjct: 41  MLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEF 92
           R+LK YGE PE  +IN+T TF   G D++I+F
Sbjct: 101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF 131

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Mus musculus (taxid: 10090)

>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4

 Score =  144 bits (364), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEA+CFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct: 41  MLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEF 92
           R+LK YGE PE  +IN+T TF   G D++I+F
Sbjct: 101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF 131

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Homo sapiens (taxid: 9606)

>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3

 Score =  144 bits (363), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEA+CFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct: 41  MLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEF 92
           R+LK YGE PE  +IN+T TF   G D++++F
Sbjct: 101 RSLKAYGELPEHAKINETDTF-GPGDDDEVQF 131

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Pan troglodytes (taxid: 9598)

>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif11 PE=2 SV=2

 Score =  141 bits (355), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 75/93 (80%), Gaps = 1/93 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGR+EA CFDG KRL HIRGKLRKKVWINQGDIIL+ LR++QD K DVILKYT DEA
Sbjct: 41  MLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQDEKGDVILKYTADEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDE-DIEF 92
           R LK  GE PET +IN+T TF  EG D+ D EF
Sbjct: 101 RTLKNQGELPETAKINETDTFGAEGEDDLDFEF 133

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54YJ6|IF1A_DICDI Eukaryotic translation initiation factor 1A OS=Dictyostelium discoideum GN=eif1a PE=3 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 68/81 (83%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEA CFDG KRLCHI G+LRKK WIN GDIILI LRDYQ+ KADVIL+Y  DEA
Sbjct: 40  MLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLRDYQNDKADVILRYNVDEA 99

Query: 61  RNLKTYGEFPETVRINDTVTF 81
           RNLKTYGE PET RIN+T  F
Sbjct: 100 RNLKTYGELPETARINETDAF 120

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Dictyostelium discoideum (taxid: 44689)

>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%), Gaps = 1/92 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAM FDG KRL HIRGKLRKKVWIN  DIIL+GLR+YQD KADVILKY  DEA
Sbjct: 41  MLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEF 92
           R+LK YGE PE  +IN+T TF   G D++I+F
Sbjct: 101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF 131

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
242007391	148	eukaryotic translation initiation factor	0.391	0.729	0.925	1e-52
24647907	148	eukaryotic initiation factor 1A, isoform	0.391	0.729	0.861	2e-50
240849011	149	eukaryotic translation initiation factor	0.391	0.724	0.889	3e-50
307184782	147	Eukaryotic translation initiation factor	0.387	0.727	0.907	4e-50
91079674	148	PREDICTED: similar to Eukaryotic initiat	0.391	0.729	0.879	7e-50
7264651	148	eukaryotic translation initiation factor	0.391	0.729	0.851	8e-50
240849560	149	eukaryotic translation initiation factor	0.391	0.724	0.880	9e-50
307196552	142	Eukaryotic translation initiation factor	0.387	0.753	0.907	1e-49
149898936	148	eukaryotic initiation factor 1A [Triatom	0.391	0.729	0.888	1e-49
312371469	148	hypothetical protein AND_30780 [Anophele	0.391	0.729	0.851	2e-48

>gi|242007391|ref|XP_002424524.1| eukaryotic translation initiation factor 1A, X-chromosomal, putative [Pediculus humanus corporis] gi|212507950|gb|EEB11786.1| eukaryotic translation initiation factor 1A, X-chromosomal, putative [Pediculus humanus corporis]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 105/108 (97%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA
Sbjct: 41  MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
           RNLKTYGEFPETVRINDTVTFVEEG+DEDIEFGDE+SD+ E N VD++
Sbjct: 101 RNLKTYGEFPETVRINDTVTFVEEGFDEDIEFGDEVSDEGEDNEVDDI 148

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24647907|ref|NP_524728.2| eukaryotic initiation factor 1A, isoform A [Drosophila melanogaster] gi|45553405|ref|NP_996231.1| eukaryotic initiation factor 1A, isoform B [Drosophila melanogaster] gi|125776545|ref|XP_001359311.1| GA20792 [Drosophila pseudoobscura pseudoobscura] gi|194764537|ref|XP_001964385.1| GF23078 [Drosophila ananassae] gi|194900238|ref|XP_001979664.1| GG22826 [Drosophila erecta] gi|195062888|ref|XP_001996271.1| GH22399 [Drosophila grimshawi] gi|195109642|ref|XP_001999392.1| GI24484 [Drosophila mojavensis] gi|195152353|ref|XP_002017101.1| GL21704 [Drosophila persimilis] gi|195348897|ref|XP_002040983.1| GM15296 [Drosophila sechellia] gi|195391928|ref|XP_002054611.1| GJ24550 [Drosophila virilis] gi|195449988|ref|XP_002072314.1| GK22392 [Drosophila willistoni] gi|195497597|ref|XP_002096168.1| eIF-1A [Drosophila yakuba] gi|195569935|ref|XP_002102964.1| GD19223 [Drosophila simulans] gi|7300367|gb|AAF55526.1| eukaryotic initiation factor 1A, isoform A [Drosophila melanogaster] gi|21064547|gb|AAM29503.1| RE54849p [Drosophila melanogaster] gi|38047995|gb|AAR09900.1| similar to Drosophila melanogaster eIF-1A, partial [Drosophila yakuba] gi|45446533|gb|AAS65169.1| eukaryotic initiation factor 1A, isoform B [Drosophila melanogaster] gi|54639054|gb|EAL28456.1| GA20792 [Drosophila pseudoobscura pseudoobscura] gi|190614657|gb|EDV30181.1| GF23078 [Drosophila ananassae] gi|190651367|gb|EDV48622.1| GG22826 [Drosophila erecta] gi|193899766|gb|EDV98632.1| GH22399 [Drosophila grimshawi] gi|193915986|gb|EDW14853.1| GI24484 [Drosophila mojavensis] gi|194112158|gb|EDW34201.1| GL21704 [Drosophila persimilis] gi|194122588|gb|EDW44631.1| GM15296 [Drosophila sechellia] gi|194152697|gb|EDW68131.1| GJ24550 [Drosophila virilis] gi|194168399|gb|EDW83300.1| GK22392 [Drosophila willistoni] gi|194182269|gb|EDW95880.1| eIF-1A [Drosophila yakuba] gi|194198891|gb|EDX12467.1| GD19223 [Drosophila simulans] gi|220948970|gb|ACL87028.1| eIF-1A-PA [synthetic construct] gi|220957690|gb|ACL91388.1| eIF-1A-PA [synthetic construct]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/108 (86%), Positives = 105/108 (97%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQGDIIL+GLRDYQD+KADVILKYTPDEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILVGLRDYQDSKADVILKYTPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
           RNLKTYGEFPE+VRIN+TVTFVE+G+DEDIEFGDEIS +++ ++VDN+
Sbjct: 101 RNLKTYGEFPESVRINETVTFVEDGFDEDIEFGDEISSEDDADSVDNI 148

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849011|ref|NP_001155546.1| eukaryotic translation initiation factor 1A-like [Acyrthosiphon pisum] gi|239787947|dbj|BAH70673.1| ACYPI003855 [Acyrthosiphon pisum]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/109 (88%), Positives = 103/109 (94%), Gaps = 1/109 (0%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQ DI+LIGLR+YQD KADVILKYTPDEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQADIVLIGLREYQDTKADVILKYTPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEG-NAVDNL 108
           RNLKTYGEFPETVRINDTVTFV++G DEDIEFGD+ISDDEE  NAVDN+
Sbjct: 101 RNLKTYGEFPETVRINDTVTFVDDGLDEDIEFGDDISDDEEADNAVDNI 149

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184782|gb|EFN71096.1| Eukaryotic translation initiation factor 1A, X-chromosomal [Camponotus floridanus]

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/108 (90%), Positives = 104/108 (96%), Gaps = 1/108 (0%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYT DEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTSDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
           RNLKTYGEFPETVRINDTVTFVE+G+DEDIEFGDEISD++E + VDN+
Sbjct: 101 RNLKTYGEFPETVRINDTVTFVEDGFDEDIEFGDEISDNDE-DDVDNI 147

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079674|ref|XP_967161.1| PREDICTED: similar to Eukaryotic initiation factor 1A CG8053-PA [Tribolium castaneum] gi|270004484|gb|EFA00932.1| hypothetical protein TcasGA2_TC003838 [Tribolium castaneum]

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/108 (87%), Positives = 102/108 (94%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
           RNLKTYGEFPE+VRIN+TVTFVEEG+DEDIEFGD+IS  +E + VD +
Sbjct: 101 RNLKTYGEFPESVRINETVTFVEEGFDEDIEFGDDISSADEADPVDGI 148

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|7264651|gb|AAF44294.1|AF169359_1 eukaryotic translation initiation factor 1A [Drosophila melanogaster]

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 92/108 (85%), Positives = 105/108 (97%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQG+IIL+GLRDYQD+KADVILKYTPDEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGEIILVGLRDYQDSKADVILKYTPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
           RNLKTYGEFPE+VRIN+TVTFVE+G+DEDIEFGDEIS +++ ++VDN+
Sbjct: 101 RNLKTYGEFPESVRINETVTFVEDGFDEDIEFGDEISSEDDADSVDNI 148

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849560|ref|NP_001155534.1| eukaryotic translation initiation factor 1A-like [Acyrthosiphon pisum] gi|239787978|dbj|BAH70687.1| ACYPI003565 [Acyrthosiphon pisum]

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 103/109 (94%), Gaps = 1/109 (0%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQ DI+LIGLR+YQD KADVILKYTPDEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQADIVLIGLREYQDTKADVILKYTPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEG-NAVDNL 108
           RNLKTYGEFPETVRINDTVTFV++G DEDIEFGD+IS+DEE  NAVDN+
Sbjct: 101 RNLKTYGEFPETVRINDTVTFVDDGLDEDIEFGDDISEDEEADNAVDNI 149

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196552|gb|EFN78082.1| Eukaryotic translation initiation factor 1A, X-chromosomal [Harpegnathos saltator]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/108 (90%), Positives = 103/108 (95%), Gaps = 1/108 (0%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYT DEA
Sbjct: 36  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTSDEA 95

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
           RNLKTYGEFPETVRINDTVTFVE+G DEDIEFGDEIS+D+E + VDN+
Sbjct: 96  RNLKTYGEFPETVRINDTVTFVEDGLDEDIEFGDEISNDDE-DDVDNI 142

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149898936|gb|ABR27985.1| eukaryotic initiation factor 1A [Triatoma infestans]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/108 (88%), Positives = 100/108 (92%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQGDIILIGLRDYQD KADVI KYTPDEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDTKADVIQKYTPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
           RNLKTYGEFPETVRINDT TF+EEGYDEDIEFG E+SD+ E N VDN+
Sbjct: 101 RNLKTYGEFPETVRINDTGTFLEEGYDEDIEFGYEVSDEGEDNVVDNM 148

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371469|gb|EFR19650.1| hypothetical protein AND_30780 [Anopheles darlingi]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/108 (85%), Positives = 101/108 (93%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQGDIILIGLRDYQD+KADVILKYTPDEA
Sbjct: 41  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDSKADVILKYTPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
           RNLKTYGEFPE+VRIN+TVTFVE   D+DIEFGD+ S  EEG+A+D++
Sbjct: 101 RNLKTYGEFPESVRINETVTFVENDMDDDIEFGDDYSSSEEGDAIDDI 148

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
FB|FBgn0026250	148	eIF-1A "Eukaryotic initiation	0.391	0.729	0.851	4.1e-49
ZFIN|ZDB-GENE-030131-1319	150	eif1axb "eukaryotic translatio	0.398	0.733	0.684	1.7e-36
ASPGD|ASPL0000074179	149	AN8712 [Emericella nidulans (t	0.380	0.704	0.688	4.4e-36
UNIPROTKB|F1SQN5	144	EIF1AX "Uncharacterized protei	0.358	0.687	0.742	5.7e-36
UNIPROTKB|K7GL60	116	EIF1AX "Uncharacterized protei	0.358	0.853	0.742	5.7e-36
UNIPROTKB|Q32LC3	144	EIF1AX "Uncharacterized protei	0.358	0.687	0.742	7.2e-36
UNIPROTKB|J9NYQ8	144	EIF1AX "Uncharacterized protei	0.358	0.687	0.742	7.2e-36
UNIPROTKB|P47813	144	EIF1AX "Eukaryotic translation	0.358	0.687	0.742	7.2e-36
UNIPROTKB|I3LAQ2	144	EIF1AX "Uncharacterized protei	0.358	0.687	0.742	7.2e-36
MGI|MGI:1913485	144	Eif1ax "eukaryotic translation	0.358	0.687	0.742	7.2e-36

FB|FBgn0026250 eIF-1A "Eukaryotic initiation factor 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 92/108 (85%), Positives = 105/108 (97%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEAMCFDG KRLCHIRGKLRKKVWINQG+IIL+GLRDYQD+KADVILKYTPDEA
Sbjct:    41 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGEIILVGLRDYQDSKADVILKYTPDEA 100

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
             RNLKTYGEFPE+VRIN+TVTFVE+G+DEDIEFGDEIS +++ ++VDN+
Sbjct:   101 RNLKTYGEFPESVRINETVTFVEDGFDEDIEFGDEISSEDDADSVDNI 148

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA;ISS;NAS

GO:0016282 "eukaryotic 43S preinitiation complex" evidence=ISS

GO:0007224 "smoothened signaling pathway" evidence=IGI

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

ZFIN|ZDB-GENE-030131-1319 eif1axb "eukaryotic translation initiation factor 1A, X-linked, b" [Danio rerio (taxid:7955)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 78/114 (68%), Positives = 90/114 (78%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIILIGLRDYQD KADVILKY  DEA
Sbjct:    41 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEA 100

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNLYLQMHM 114
             R+LK YGE PE  +IN+T TF   G D++I+F D+I DD+E   +D++    H+
Sbjct:   101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF-DDIGDDDED--IDDVSTDAHL 150

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

ASPGD|ASPL0000074179 AN8712 [Emericella nidulans (taxid:162425)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 73/106 (68%), Positives = 86/106 (81%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEA+CFDG KRL HIRGKLRKKVWINQGDIIL+ LRDYQD K DVI+KYT DEA
Sbjct:    41 MLGNGRLEALCFDGEKRLAHIRGKLRKKVWINQGDIILLSLRDYQDEKGDVIMKYTADEA 100

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVD 106
             R+LK YGE PE  +IN+T T+  EG+++++EF DE  D E+   VD
Sbjct:   101 RSLKAYGELPEHAKINETDTYGHEGFEDNVEF-DEDRDSEDEKEVD 145

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0033592 "RNA strand annealing activity" evidence=IEA

UNIPROTKB|F1SQN5 EIF1AX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 75/101 (74%), Positives = 85/101 (84%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct:    41 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
             R+LK YGE PE  +IN+T TF   G D++I+F D+I+DD+E
Sbjct:   101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF-DDIADDDE 139

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|K7GL60 EIF1AX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 75/101 (74%), Positives = 85/101 (84%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct:    13 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 72

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
             R+LK YGE PE  +IN+T TF   G D++I+F D+I+DD+E
Sbjct:    73 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF-DDIADDDE 111

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q32LC3 EIF1AX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 75/101 (74%), Positives = 84/101 (83%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct:    41 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
             R+LK YGE PE  +IN+T TF   G D++I+F D+I DD+E
Sbjct:   101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF-DDIGDDDE 139

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|J9NYQ8 EIF1AX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 75/101 (74%), Positives = 84/101 (83%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct:    41 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
             R+LK YGE PE  +IN+T TF   G D++I+F D+I DD+E
Sbjct:   101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF-DDIGDDDE 139

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|P47813 EIF1AX "Eukaryotic translation initiation factor 1A, X-chromosomal" [Homo sapiens (taxid:9606)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 75/101 (74%), Positives = 84/101 (83%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct:    41 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
             R+LK YGE PE  +IN+T TF   G D++I+F D+I DD+E
Sbjct:   101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF-DDIGDDDE 139

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|I3LAQ2 EIF1AX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 75/101 (74%), Positives = 84/101 (83%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct:    41 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
             R+LK YGE PE  +IN+T TF   G D++I+F D+I DD+E
Sbjct:   101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF-DDIGDDDE 139

GO:0003743 "translation initiation factor activity" evidence=IEA

MGI|MGI:1913485 Eif1ax "eukaryotic translation initiation factor 1A, X-linked" [Mus musculus (taxid:10090)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 75/101 (74%), Positives = 84/101 (83%)

Query:     1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
             MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct:    41 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100

Query:    61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
             R+LK YGE PE  +IN+T TF   G D++I+F D+I DD+E
Sbjct:   101 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF-DDIGDDDE 139

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GVM3	IF1AY_PANTR	No assigned EC number	0.7391	0.3297	0.6319	yes	N/A
Q8BMJ3	IF1AX_MOUSE	No assigned EC number	0.7608	0.3297	0.6319	yes	N/A
P47813	IF1AX_HUMAN	No assigned EC number	0.7608	0.3297	0.6319	yes	N/A
Q5RA42	IF1AX_PONAB	No assigned EC number	0.7608	0.3297	0.6319	yes	N/A
Q6VV72	IF1A_RAT	No assigned EC number	0.7608	0.3297	0.6319	yes	N/A
P55877	IF1A_SCHPO	No assigned EC number	0.7311	0.3333	0.6666	yes	N/A
O14602	IF1AY_HUMAN	No assigned EC number	0.75	0.3297	0.6319	yes	N/A
Q54YJ6	IF1A_DICDI	No assigned EC number	0.7901	0.2934	0.5744	yes	N/A
P38912	IF1A_YEAST	No assigned EC number	0.6413	0.3297	0.5947	yes	N/A
Q60872	IF1A_MOUSE	No assigned EC number	0.7608	0.3297	0.6319	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	276
PTZ00329	155	PTZ00329, PTZ00329, eukaryotic translation initiat	1e-52
PLN00208	145	PLN00208, PLN00208, translation initiation factor	3e-49
cd05793	77	cd05793, S1_IF1A, S1_IF1A: Translation initiation	6e-41
smart00652	83	smart00652, eIF1a, eukaryotic translation initiati	3e-34
cd04456	78	cd04456, S1_IF1A_like, S1_IF1A_like: Translation i	9e-29
TIGR00523	99	TIGR00523, eIF-1A, eukaryotic/archaeal initiation	3e-24
pfam01176	65	pfam01176, eIF-1a, Translation initiation factor 1	2e-22
PRK04012	100	PRK04012, PRK04012, translation initiation factor	5e-22
COG0361	75	COG0361, InfA, Translation initiation factor 1 (IF	1e-19

>gnl|CDD|185558 PTZ00329, PTZ00329, eukaryotic translation initiation factor 1A; Provisional

 Score =  168 bits (427), Expect = 1e-52
 Identities = 75/108 (69%), Positives = 89/108 (82%), Gaps = 1/108 (0%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEA CFDG KRLCHIRGK+RK+VWIN GDIIL+ LRD+QD+KADVILKYTPDEA
Sbjct: 41  MLGNGRLEAYCFDGVKRLCHIRGKMRKRVWINIGDIILVSLRDFQDSKADVILKYTPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNL 108
           R LK +GE PET +IN+T  F +EG D+ IEF D+ SD+E  + + NL
Sbjct: 101 RALKQHGELPETAKINETDIFDDEG-DDGIEFQDDESDEEATDEMLNL 147

Length = 155

>gnl|CDD|177798 PLN00208, PLN00208, translation initiation factor (eIF); Provisional

 Score =  159 bits (403), Expect = 3e-49
 Identities = 68/105 (64%), Positives = 76/105 (72%), Gaps = 5/105 (4%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGR EA+C DGTKRLCHIRGK+RKKVWI  GDIIL+GLRDYQD KADVILKY PDEA
Sbjct: 41  MLGNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA 100

Query: 61  RNLKTYGEFPETVRINDTVTFV-----EEGYDEDIEFGDEISDDE 100
           R LK YGE PE  R+N+ +        +   D+ IEF DE  D  
Sbjct: 101 RLLKAYGELPENTRLNEGIAGDLDEEEDGEGDDYIEFEDEDIDKI 145

Length = 145

>gnl|CDD|240219 cd05793, S1_IF1A, S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain

 Score =  135 bits (343), Expect = 6e-41
 Identities = 48/68 (70%), Positives = 55/68 (80%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
          MLGNGRLE  CFDG KRLC IRGK+RK+VWIN+GDI+L+   D+QD KAD+I KYTPDE 
Sbjct: 9  MLGNGRLEVRCFDGKKRLCRIRGKMRKRVWINEGDIVLVAPWDFQDDKADIIYKYTPDEV 68

Query: 61 RNLKTYGE 68
          R LK  GE
Sbjct: 69 RWLKRKGE 76

S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea. Length = 77

>gnl|CDD|128900 smart00652, eIF1a, eukaryotic translation initiation factor 1A

 Score =  118 bits (299), Expect = 3e-34
 Identities = 45/70 (64%), Positives = 52/70 (74%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
          MLGNGRLE MC DG +RL  I GK+RKKVWI +GDI+L+   D+QD KAD+I KYT DE 
Sbjct: 14 MLGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLVDPWDFQDVKADIIYKYTKDEV 73

Query: 61 RNLKTYGEFP 70
          R LK  GE P
Sbjct: 74 RWLKKEGELP 83

Length = 83

>gnl|CDD|239903 cd04456, S1_IF1A_like, S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain

 Score =  104 bits (261), Expect = 9e-29
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDY-QDAKADVILKYTPDE 59
          MLGN R E  C DG +RL  I GKLRK +WI +GD +++   +  +D KAD+I  Y  D 
Sbjct: 9  MLGNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIVDPIEEGEDVKADIIFVYCKDH 68

Query: 60 ARNLKTYGEF 69
           R+LK  G  
Sbjct: 69 VRSLKKEGFL 78

IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea. Length = 78

>gnl|CDD|129614 TIGR00523, eIF-1A, eukaryotic/archaeal initiation factor 1A

 Score = 93.4 bits (232), Expect = 3e-24
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDE 59
          MLG GR++  C DG  RL  I GKL+K++WI +GD++++   ++Q D K D++ +YT  +
Sbjct: 28 MLGAGRVKVRCLDGKTRLGRIPGKLKKRIWIREGDVVIVKPWEFQGDDKCDIVWRYTKTQ 87

Query: 60 ARNLKTYGEFPE 71
             LK  G   E
Sbjct: 88 VEWLKRKGYLKE 99

Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C [Protein synthesis, Translation factors]. Length = 99

>gnl|CDD|216345 pfam01176, eIF-1a, Translation initiation factor 1A / IF-1

 Score = 87.2 bits (217), Expect = 2e-22
 Identities = 27/54 (50%), Positives = 35/54 (64%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILK 54
          MLGNGR E    DG +RL HI GK RK++WI +GD +L+ L  Y   K D+I +
Sbjct: 12 MLGNGRFEVELEDGHERLAHIPGKRRKRIWILRGDFVLVELSPYDKTKGDIIYR 65

This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. Length = 65

>gnl|CDD|179708 PRK04012, PRK04012, translation initiation factor IF-1A; Provisional

 Score = 87.3 bits (217), Expect = 5e-22
 Identities = 28/71 (39%), Positives = 45/71 (63%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLG  R+   C DG +R+  I GK++K++WI +GD++++   D+QD KAD+I +YT  + 
Sbjct: 30  MLGANRVRVRCMDGVERMGRIPGKMKKRMWIREGDVVIVAPWDFQDEKADIIWRYTKPQV 89

Query: 61  RNLKTYGEFPE 71
             L+  G   E
Sbjct: 90  DWLRRKGYISE 100

Length = 100

>gnl|CDD|223438 COG0361, InfA, Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]

 Score = 80.3 bits (199), Expect = 1e-19
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYTPDE 59
          ML NGR      +G +RL HI GK+RK ++ I  GD++L+ L  Y   K  ++ +Y  DE
Sbjct: 16 MLPNGRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELSPYDLTKGRIVYRYKKDE 75

Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
PTZ00329	155	eukaryotic translation initiation factor 1A; Provi	100.0
KOG3403|consensus	145		100.0
PLN00208	145	translation initiation factor (eIF); Provisional	100.0
smart00652	83	eIF1a eukaryotic translation initiation factor 1A.	99.96
cd04456	78	S1_IF1A_like S1_IF1A_like: Translation initiation	99.95
PRK04012	100	translation initiation factor IF-1A; Provisional	99.95
cd05793	77	S1_IF1A S1_IF1A: Translation initiation factor IF1	99.95
TIGR00523	99	eIF-1A eukaryotic/archaeal initiation factor 1A. R	99.95
cd05792	78	S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translat	99.93
COG0361	75	InfA Translation initiation factor 1 (IF-1) [Trans	99.92
TIGR00008	68	infA translation initiation factor IF-1. This fami	99.87
PF01176	65	eIF-1a: Translation initiation factor 1A / IF-1; I	99.85
PRK12442	87	translation initiation factor IF-1; Reviewed	99.84
CHL00010	78	infA translation initiation factor 1	99.63
KOG2925|consensus	167		99.62
PRK00276	72	infA translation initiation factor IF-1; Validated	99.61
cd04451	64	S1_IF1 S1_IF1: Translation Initiation Factor IF1,	99.3
cd04466	68	S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (	97.44
PRK00098	298	GTPase RsgA; Reviewed	94.44
PRK12289	352	GTPase RsgA; Reviewed	93.46
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	92.96
PRK12288	347	GTPase RsgA; Reviewed	92.88
PRK01889	356	GTPase RsgA; Reviewed	83.72

>PTZ00329 eukaryotic translation initiation factor 1A; Provisional

Probab=100.00  E-value=4.7e-38  Score=267.19  Aligned_cols=100  Identities=73%  Similarity=1.216  Sum_probs=93.6

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCcccccccccc
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVT   80 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNEtdt   80 (276)
                      ||||++|+|+|+||++|||||||||||+|||++||+|+|+|||||++||+|||||+++||++|+++|+||++|+||++++
T Consensus        41 ~LGn~~f~V~c~dG~~rLa~I~GKmRK~IWI~~GD~VlVel~~yd~~KgdIi~Ry~~devr~Lk~~g~~P~~~~~~~~~~  120 (155)
T PTZ00329         41 MLGNGRLEAYCFDGVKRLCHIRGKMRKRVWINIGDIILVSLRDFQDSKADVILKYTPDEARALKQHGELPETAKINETDI  120 (155)
T ss_pred             EcCCCEEEEEECCCCEEEEEeeccceeeEEecCCCEEEEeccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCeeecCCCCCccc
Q psy2272          81 FVEEGYDEDIEFGDEISDDEE  101 (276)
Q Consensus        81 fg~~~~dd~ieFd~~~d~~~d  101 (276)
                      |++++ +++|+|.+++|++++
T Consensus       121 ~~~~~-~~~~~f~~~~~~~~~  140 (155)
T PTZ00329        121 FDDEG-DDGIEFQDDESDEEA  140 (155)
T ss_pred             cCcCc-CCCeEEecccccccc
Confidence            98664 778999876655543

>KOG3403|consensus

Probab=100.00  E-value=6.2e-38  Score=263.05  Aligned_cols=105  Identities=73%  Similarity=1.181  Sum_probs=101.0

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCcccccccccc
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVT   80 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNEtdt   80 (276)
                      |||||+++|.|+||++|+|||+||+||||||++||||||.+++||++|||||++|++||+|.||++|+||+++++||+++
T Consensus        41 mLGnGr~e~~CfDGvkR~~hiRGklrkkVwi~~GDIiLv~lRD~qd~kaDvilKY~~dEar~LK~~Gelpe~~k~Ne~~~  120 (145)
T KOG3403|consen   41 MLGNGRLEASCFDGVKRLCHIRGKLRKKVWINQGDIILVGLRDYQDDKADVILKYMPDEARILKAYGELPENAKINETDT  120 (145)
T ss_pred             hhcCCcEEEEEecchhhhhhhhccceeeEeecCCCEEEEeeecccccccceehhhChHHHHHHHhcCcCCcccccccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCeeecCCCCCcccccch
Q psy2272          81 FVEEGYDEDIEFGDEISDDEEGNAV  105 (276)
Q Consensus        81 fg~~~~dd~ieFd~~~d~~~d~~~i  105 (276)
                      |+.+++||++.|+++.+++||+|++
T Consensus       121 ~~~e~~d~~~~~~~~~~~~ed~d~~  145 (145)
T KOG3403|consen  121 FGVEDDDDDIDFDDIEDDDEDIDDI  145 (145)
T ss_pred             cCccCCccccccccccccccccccC
Confidence            9999888899999988888877764

>PLN00208 translation initiation factor (eIF); Provisional

Probab=100.00  E-value=1.4e-34  Score=243.75  Aligned_cols=95  Identities=71%  Similarity=1.168  Sum_probs=87.4

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCcccccccccc
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVT   80 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNEtdt   80 (276)
                      ||||++|+|+|+||++|||||||||||+|||++||+|+|++|+||++||||||||+++||++|+++|+||+.|.+|++++
T Consensus        41 ~lGn~~~~V~c~dG~~rLa~IpGKmRKrIWI~~GD~VlVel~~~d~~KgdIv~ry~~dqvr~Lkk~G~~P~~f~~~~~~~  120 (145)
T PLN00208         41 MLGNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA  120 (145)
T ss_pred             EcCCCEEEEEECCCCEEEEEEeccceeeEEecCCCEEEEEccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ---cc--cCCCCCCeeecCC
Q psy2272          81 ---FV--EEGYDEDIEFGDE   95 (276)
Q Consensus        81 ---fg--~~~~dd~ieFd~~   95 (276)
                         |.  .+++|+.|+|+++
T Consensus       121 ~~~~~~~~~~~~~~~~f~~~  140 (145)
T PLN00208        121 GDLDEEEDGEGDDYIEFEDE  140 (145)
T ss_pred             cccccccCcccCcceeeccc
Confidence               41  1224667888863

>smart00652 eIF1a eukaryotic translation initiation factor 1A

Probab=99.96  E-value=3.6e-29  Score=192.13  Aligned_cols=70  Identities=64%  Similarity=1.080  Sum_probs=69.2

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCC
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFP   70 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLP   70 (276)
                      ++||++|+|+|+||++++|||||||||+|||++||+|+|++|||+++||||+|||+++|+++|+++|+||
T Consensus        14 ~lG~~~~~V~~~dG~~~la~ipgK~Rk~iwI~~GD~VlVe~~~~~~~kg~Iv~r~~~~~vk~L~k~g~wp   83 (83)
T smart00652       14 MLGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLVDPWDFQDVKADIIYKYTKDEVRWLKKEGELP   83 (83)
T ss_pred             EcCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEecCCCCCEEEEEEEeCHHHHHHHHHcCCCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999998

>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain

Probab=99.95  E-value=1.7e-28  Score=186.87  Aligned_cols=69  Identities=46%  Similarity=0.830  Sum_probs=67.4

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccC-CCCeEEEEEecCHhHHHHHHHcCCC
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDY-QDAKADVILKYTPDEARNLKTYGEF   69 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDY-QD~KGDIIyRYt~DEIR~LKk~GeL   69 (276)
                      ++||++|+|+|+||+++||||||||||+|||++||+|+|+|||| +++||||+|||++|||++|+++|+|
T Consensus         9 ~lG~~~~~V~~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV~~~~~~~~~kg~Iv~r~~~~~vk~L~k~g~w   78 (78)
T cd04456           9 MLGNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIVDPIEEGEDVKADIIFVYCKDHVRSLKKEGFL   78 (78)
T ss_pred             ECCCCEEEEEECCCCEEEEEEchhhccCEEEcCCCEEEEEecccCCCceEEEEEEeCHHHHHHHHHcCcC
Confidence            68999999999999999999999999999999999999999999 6889999999999999999999987

IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.

>PRK04012 translation initiation factor IF-1A; Provisional

Probab=99.95  E-value=1.9e-28  Score=194.73  Aligned_cols=71  Identities=39%  Similarity=0.821  Sum_probs=69.7

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCc
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE   71 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPE   71 (276)
                      ||||++|+|+|+||+++||||||||||+|||++||+|+|++|||+++||||+|||+++|+++|+++|+||+
T Consensus        30 ~lG~~~~~V~~~dG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~~~~~kg~Iv~r~~~~qv~~L~~~g~~~~  100 (100)
T PRK04012         30 MLGANRVRVRCMDGVERMGRIPGKMKKRMWIREGDVVIVAPWDFQDEKADIIWRYTKPQVDWLRRKGYISE  100 (100)
T ss_pred             EcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEEEecccCCCEEEEEEEcCHHHHHHHHHcCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999985

>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain

Probab=99.95  E-value=2.1e-28  Score=185.76  Aligned_cols=69  Identities=70%  Similarity=1.221  Sum_probs=67.6

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCC
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEF   69 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeL   69 (276)
                      ++||++|+|+|+||++++|||||||||+|||++||+|+|++|||+++||+|+|||+++|+++|+++|+|
T Consensus         9 ~~g~~~~~V~~~~g~~~la~i~gK~rk~iwI~~GD~V~Ve~~~~d~~kg~Iv~r~~~~~v~~L~~~g~i   77 (77)
T cd05793           9 MLGNGRLEVRCFDGKKRLCRIRGKMRKRVWINEGDIVLVAPWDFQDDKADIIYKYTPDEVRWLKRKGEL   77 (77)
T ss_pred             EcCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEeccccCCEEEEEEEcCHHHHHHHHHcCcC
Confidence            589999999999999999999999999999999999999999999999999999999999999999985

S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.

>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A

Probab=99.95  E-value=4.9e-28  Score=191.91  Aligned_cols=71  Identities=41%  Similarity=0.847  Sum_probs=69.5

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCC-CCeEEEEEecCHhHHHHHHHcCCCCc
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDEARNLKTYGEFPE   71 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQ-D~KGDIIyRYt~DEIR~LKk~GeLPE   71 (276)
                      |+||++|+|+|+||+++||||||||||+|||++||+|+|+|||++ +.||+|+|||+++||++|+++|+||+
T Consensus        28 ~lG~~~~~V~~~dG~~~la~i~GK~Rk~iwI~~GD~VlVsp~d~~~~~kg~Iv~r~~~~qv~~L~~~g~~p~   99 (99)
T TIGR00523        28 MLGAGRVKVRCLDGKTRLGRIPGKLKKRIWIREGDVVIVKPWEFQGDDKCDIVWRYTKTQVEWLKRKGYLKE   99 (99)
T ss_pred             EcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEEEEccCCCCccEEEEEEcCHHHHHHHHHcCCCCC
Confidence            689999999999999999999999999999999999999999999 88999999999999999999999995

Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C

>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain

Probab=99.93  E-value=2.4e-26  Score=176.60  Aligned_cols=69  Identities=29%  Similarity=0.500  Sum_probs=67.2

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCC-CeEEEEEecCHhHHHHHHHcCCC
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQD-AKADVILKYTPDEARNLKTYGEF   69 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD-~KGDIIyRYt~DEIR~LKk~GeL   69 (276)
                      ++||++|+|+|+||.++||+|||||||+|||++||+|||+||++|+ .||||+++|+++|+++|+++|+|
T Consensus         9 ~~G~n~~~V~~~dG~~~l~~iP~KfRk~iWIkrGd~VlV~p~~~~~kvkgeIv~i~~~~qvk~L~k~g~W   78 (78)
T cd05792           9 SKGNNLHEVETPNGSRYLVSMPTKFRKNIWIKRGDFVLVEPIEEGDKVKAEIVKILTRDHVKYIKEEGLW   78 (78)
T ss_pred             cCCCcEEEEEcCCCCEEEEEechhhcccEEEEeCCEEEEEecccCCceEEEEEEEECHHHHHHHHHcCCC
Confidence            6899999999999999999999999999999999999999999996 69999999999999999999987

eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.

>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.7e-25  Score=171.84  Aligned_cols=59  Identities=41%  Similarity=0.741  Sum_probs=57.7

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecCHhH
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYTPDE   59 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt~DE   59 (276)
                      ||||++|+|+|+||++++||||||||| +|||.+||+|+|+|||||++||||+|||+++|
T Consensus        16 ~L~~~~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve~~~~d~~kg~I~~Ry~~~~   75 (75)
T COG0361          16 MLPNGRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELSPYDLTKGRIVYRYKKDE   75 (75)
T ss_pred             ecCCCEEEEEecCCcEEEEEccCcchheeEEeCCCCEEEEEecccccccccEEEEecCCC
Confidence            699999999999999999999999999 99999999999999999999999999999875

>TIGR00008 infA translation initiation factor IF-1

Probab=99.87  E-value=2.5e-22  Score=151.50  Aligned_cols=54  Identities=26%  Similarity=0.407  Sum_probs=52.8

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEe
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILK   54 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyR   54 (276)
                      +|||++|+|+|+||++++||||||||+ +|||.+||.|+|++||||++||+||||
T Consensus        14 ~L~~~~f~V~l~ng~~vla~i~GKmr~~rI~I~~GD~V~Ve~spyd~tkgrIi~R   68 (68)
T TIGR00008        14 SLPNAMFRVELENGHEVLAHISGKIRMHYIRILPGDKVKVELSPYDLTRGRITYR   68 (68)
T ss_pred             ECCCCEEEEEECCCCEEEEEecCcchhccEEECCCCEEEEEECcccCCcEeEEeC
Confidence            689999999999999999999999997 999999999999999999999999997

This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).

>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins

Probab=99.85  E-value=9.9e-22  Score=143.39  Aligned_cols=54  Identities=43%  Similarity=0.867  Sum_probs=48.8

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEe
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILK   54 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyR   54 (276)
                      ||||++|+|+|+||++++|+||||||++|||++||+|+|++|+|+++||+||||
T Consensus        12 ~lG~~~~~V~~~dg~~~l~~i~gK~r~~iwI~~GD~V~V~~~~~d~~kG~Ii~r   65 (65)
T PF01176_consen   12 MLGNNLFEVECEDGEERLARIPGKFRKRIWIKRGDFVLVEPSPYDKVKGRIIYR   65 (65)
T ss_dssp             EESSSEEEEEETTSEEEEEEE-HHHHTCC---TTEEEEEEESTTCTTEEEEEEE
T ss_pred             ECCCCEEEEEeCCCCEEEEEeccceeeeEecCCCCEEEEEecccCCCeEEEEEC
Confidence            589999999999999999999999999999999999999999999999999997

It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.

>PRK12442 translation initiation factor IF-1; Reviewed

Probab=99.84  E-value=4.8e-21  Score=151.07  Aligned_cols=56  Identities=21%  Similarity=0.365  Sum_probs=54.9

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT   56 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt   56 (276)
                      +|||++|.|+|+||++++|||+||||+ +|||.+||.|+|++||||++||+|||||.
T Consensus        16 ~Lp~~~frV~LenG~~vla~isGKmR~~rIrIl~GD~V~VE~spYDltkGRIiyR~~   72 (87)
T PRK12442         16 VLPDSRFRVTLENGVEVGAYASGRMRKHRIRILAGDRVTLELSPYDLTKGRINFRHK   72 (87)
T ss_pred             ECCCCEEEEEeCCCCEEEEEeccceeeeeEEecCCCEEEEEECcccCCceeEEEEec
Confidence            589999999999999999999999999 99999999999999999999999999997

>CHL00010 infA translation initiation factor 1

Probab=99.63  E-value=6.1e-16  Score=117.23  Aligned_cols=58  Identities=28%  Similarity=0.412  Sum_probs=54.7

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecCHh
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYTPD   58 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt~D   58 (276)
                      ++|++.|.|+|+||+.++|+++||||+ ++|+..||+|.|++|++++++|+|||||.+.
T Consensus        16 ~lg~~~y~V~~~~g~~~~c~~rGklr~~~i~~~vGD~V~ve~~~~~~~~g~Ii~r~~~~   74 (78)
T CHL00010         16 SLPNGMFRVRLDNGCQVLGYISGKIRRNSIRILPGDRVKVELSPYDLTKGRIIYRLRNK   74 (78)
T ss_pred             EcCCCEEEEEeCCCCEEEEEeccceecCCcccCCCCEEEEEEcccCCCeEEEEEEecCC
Confidence            368999999999999999999999998 7999999999999999999999999999753

>KOG2925|consensus

Probab=99.62  E-value=5.8e-16  Score=133.71  Aligned_cols=76  Identities=25%  Similarity=0.453  Sum_probs=71.9

Q ss_pred             CCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccC---CC-CeEEEEEecCHhHHHHHHHcCCCCccccccc
Q psy2272           2 LGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDY---QD-AKADVILKYTPDEARNLKTYGEFPETVRIND   77 (276)
Q Consensus         2 LGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDY---QD-~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNE   77 (276)
                      .||++|+|+-.+|...|+.||.||||+|||++|++|+|.|+.+   +. .||.|.|.+..|+++.|++.|+||+.|+.+-
T Consensus        32 rGsnlheV~danGq~~lvsmP~KfRksiWiRRg~FvvVdpiee~~~g~KVkgeI~yVl~~d~vr~lqk~g~WPe~F~d~a  111 (167)
T KOG2925|consen   32 RGSNLHEVMDANGQNSLVSMPAKFRKSIWIRRGSFVVVDPIEEEKSGSKVKGEICYVLFFDQVRLLQKSGEWPEIFKDTA  111 (167)
T ss_pred             CCcchhhhhhcCCceeeeeCCHhhhhceEEeeCCEEEEccccccccCCccceEEEEEEccHHHHHHHHcCCcchhhhhcc
Confidence            5999999999999999999999999999999999999999999   54 4999999999999999999999999997653

>PRK00276 infA translation initiation factor IF-1; Validated

Probab=99.61  E-value=1.3e-15  Score=113.20  Aligned_cols=55  Identities=29%  Similarity=0.431  Sum_probs=52.6

Q ss_pred             CCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272           2 LGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT   56 (276)
Q Consensus         2 LGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt   56 (276)
                      +||+.|.|.|+||..++|+++||||+ ++|+.+||+|+|++|++++++|+|||||.
T Consensus        17 ~~~~~y~V~~~~g~~~~c~~~Gklr~~~i~i~vGD~V~ve~~~~~~~~g~Iv~r~~   72 (72)
T PRK00276         17 LPNAMFRVELENGHEVLAHISGKMRKNYIRILPGDKVTVELSPYDLTKGRITYRHK   72 (72)
T ss_pred             cCCCEEEEEeCCCCEEEEEEccceeeCCcccCCCCEEEEEEcccCCCeEEEEEEeC
Confidence            67889999999999999999999997 99999999999999999999999999984

>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain

Probab=99.30  E-value=6.4e-12  Score=90.31  Aligned_cols=53  Identities=28%  Similarity=0.448  Sum_probs=50.1

Q ss_pred             CCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEe
Q psy2272           2 LGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILK   54 (276)
Q Consensus         2 LGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyR   54 (276)
                      +||+.|.|+|+||..++|+++||||+ ++|+..||+|+++++++++.+|.||||
T Consensus        11 ~~g~~~~V~~~~g~~~~c~~rGklr~~~~~~~vGD~V~~~~~~~~~~~g~I~~~   64 (64)
T cd04451          11 LPNAMFRVELENGHEVLAHISGKMRMNYIRILPGDRVKVELSPYDLTKGRIVYR   64 (64)
T ss_pred             eCCCEEEEEeCCCCEEEEEECceeecCCcccCCCCEEEEEEeecCCCEEEEEEC
Confidence            56789999999999999999999996 899999999999999999889999997

IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th

>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain

Probab=97.44  E-value=0.00057  Score=48.11  Aligned_cols=51  Identities=27%  Similarity=0.277  Sum_probs=41.0

Q ss_pred             CceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272           4 NGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT   56 (276)
Q Consensus         4 NgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt   56 (276)
                      ++.+.|.+.+|....|.++|++++ ..++..||.|++++.+  ...+-|+..+.
T Consensus        10 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~VGD~V~~~~~~--~~~~~I~~vl~   61 (68)
T cd04466          10 GGFYYVETEDGKIYECRLRGKFRKDKNPPAVGDRVEFEPED--DGEGVIEEILP   61 (68)
T ss_pred             CCEEEEEeCCCeEEEEEEccccccCCCCCCCCcEEEEEECC--CCcEEEEEEec
Confidence            467889998788999999999986 6889999999999754  34566665553

Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.

>PRK00098 GTPase RsgA; Reviewed

Probab=94.44  E-value=0.13  Score=46.65  Aligned_cols=50  Identities=22%  Similarity=0.250  Sum_probs=39.6

Q ss_pred             CceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEec
Q psy2272           4 NGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKY   55 (276)
Q Consensus         4 NgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRY   55 (276)
                      ++.+.|.+.+|....|.++|++|+ +.-+..||.|+|++.  ++..|-|...+
T Consensus        10 ~~~~~v~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~--~~~~g~i~~i~   60 (298)
T PRK00098         10 GGFYYVESEDGQVYQCRARGKFRKKTNTPAVGDRVEFSAE--NNDEGVILEIH   60 (298)
T ss_pred             CCEEEEEECCCCEEEEEeccccccCCCCcCCCCEEEEEEC--CCCcEEEEEEe
Confidence            578899988899999999999986 566789999999874  34557665444

>PRK12289 GTPase RsgA; Reviewed

Probab=93.46  E-value=0.2  Score=47.40  Aligned_cols=53  Identities=17%  Similarity=0.237  Sum_probs=41.4

Q ss_pred             CceEEEEeCCC------CEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272           4 NGRLEAMCFDG------TKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT   56 (276)
Q Consensus         4 NgrfEVeC~DG------~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt   56 (276)
                      ++.|.|.+.+|      ...+|..+|++|+ ..-+..||.|.+++.++++.+|-|...+.
T Consensus        18 ~~~y~V~~~~~~~~~~~~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlp   77 (352)
T PRK12289         18 ANFYRVQLDEPQNLNPPSLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLP   77 (352)
T ss_pred             CCEEEEEECCCcccCcceEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEec
Confidence            46788988764      4789999999997 45588999999998777667776665553

>cd01854 YjeQ_engC YjeQ/EngC

Probab=92.96  E-value=0.29  Score=44.10  Aligned_cols=51  Identities=25%  Similarity=0.385  Sum_probs=40.4

Q ss_pred             CceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecCH
Q psy2272           4 NGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYTP   57 (276)
Q Consensus         4 NgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt~   57 (276)
                      ++.|.|.. +|..+.|.++|++++ +.-+..||.|.+++.+  +..|-|...+.+
T Consensus         8 ~~~~~v~~-~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R   59 (287)
T cd01854           8 GGFYDVET-EGGELRCRARGKLRKKGIKPVVGDWVEVEPDD--DGEGVIVRVLPR   59 (287)
T ss_pred             CCEEEEEE-CCeEEEEEeccccccCCCCccCCCEEEEEecC--CCcEEEEEEECC
Confidence            46788887 478999999999996 4568999999998754  456877777754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12288 GTPase RsgA; Reviewed

Probab=92.88  E-value=0.33  Score=45.70  Aligned_cols=51  Identities=18%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             CceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCC--CeEEEEEecCH
Q psy2272           4 NGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQD--AKADVILKYTP   57 (276)
Q Consensus         4 NgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD--~KGDIIyRYt~   57 (276)
                      ++.|.|.+.+|..+.|.++|++++   +..||.|.+++.+...  ..|-|...+.+
T Consensus        49 ~~~~~v~~~~g~~~~~~~~g~~~~---~~vGD~V~~~~~~~~~~~~~~~I~~il~R  101 (347)
T PRK12288         49 GQHADVEAADGEVHRCNIRRTIRS---LVTGDRVVWRPGKEALEGVSGVVEAVHPR  101 (347)
T ss_pred             CCEEEEEeCCCcEEEEEecccCCC---CCCCcEEEEEeCCCcccccceEEEEEecc
Confidence            578999999999999999999975   8899999998553322  24777666543

>PRK01889 GTPase RsgA; Reviewed

Probab=83.72  E-value=2.4  Score=39.78  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=36.8

Q ss_pred             CceEEEEeCCCCEEEEEecccccc-----eeeeecCCEEEEEeccCCCCeEEEEEecCHhH
Q psy2272           4 NGRLEAMCFDGTKRLCHIRGKLRK-----KVWINQGDIILIGLRDYQDAKADVILKYTPDE   59 (276)
Q Consensus         4 NgrfEVeC~DG~kRLAhIpGKMRK-----KVWIk~GDiVLVEprDYQD~KGDIIyRYt~DE   59 (276)
                      ++.|.|...+| +..|.++||++.     +--...||.|+++.    +..|-|...+.+..
T Consensus        38 ~~~~~v~~~~~-~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~----~~~g~I~~i~pR~~   93 (356)
T PRK01889         38 RSGYVVATEEG-EVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN----EKKARIVRLLPRRS   93 (356)
T ss_pred             CCEEEEEECCc-EEEEEecchhhccccccCCCCccCcEEEEec----CCceEEEEEECCCc
Confidence            57888988666 567999999984     23367899999985    34677776554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
1d7q_A	143	Human Translation Initiation Factor Eif1a Length =		1e-35
2oqk_A	117	Crystal Structure Of Putative Cryptosporidium Parvu		3e-30
1jt8_A	102	Archaeal Initiation Factor-1a, Aif-1a Length = 102		1e-08

>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a Length = 143

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 77/92 (83%), Gaps = 1/92 (1%)
Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct: 40  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 99
Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEF 92
           R+LK YGE PE  +IN+T TF   G D++I+F
Sbjct: 100 RSLKAYGELPEHAKINETDTF-GPGDDDEIQF 130

>pdb|2OQK|A Chain A, Crystal Structure Of Putative Cryptosporidium Parvum Translation Initiation Factor Eif-1a Length = 117

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 66/76 (86%)
Query: 2   LGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEAR 61
           LGNGRL+A CFDG KRLCHIRGK RKKVW+N GDI+L+ LRD+QD+K D+ILKYTPDEAR
Sbjct: 42  LGNGRLDAYCFDGQKRLCHIRGKXRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTPDEAR 101
Query: 62  NLKTYGEFPETVRIND 77
            LK+ GE PET +IN+
Sbjct: 102 ALKSKGEIPETTKINE 117

>pdb|1JT8|A Chain A, Archaeal Initiation Factor-1a, Aif-1a Length = 102

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDE 59
           MLG  R+   C DG  RL  I G+L+ ++W+ +GD++++   + Q D K D+I +YT  +
Sbjct: 29  MLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQ 88
Query: 60  ARNLKTYGEFPE 71
              LK  G   E
Sbjct: 89  VEWLKRKGYLDE 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1d7q_A	143	Translation initiation factor 1A; OB-fold, beta-ba	3e-33
2oqk_A	117	Putative translation initiation factor EIF-1A; mal	5e-28
1jt8_A	102	EIF-1A, probable translation initiation factor 1A;	5e-27
2dgy_A	111	MGC11102 protein; EIF-1A, structural genomics, NPP	8e-27
3i4o_A	79	Translation initiation factor IF-1; cytoplasm, pro	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1ah9_A	71	IF1, initiation factor 1; ribosome binding, protei	2e-04
1hr0_W	71	Translation initiation factor; ribosomal subunit,	4e-04

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 143

 Score =  117 bits (294), Expect = 3e-33
 Identities = 74/101 (73%), Positives = 82/101 (81%), Gaps = 1/101 (0%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct: 40  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 99

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
           R+LK YGE PE  +IN+T TF   G D++I+F D   DDE+
Sbjct: 100 RSLKAYGELPEHAKINETDTF-GPGDDDEIQFDDIGDDDED 139

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} Length = 117

 Score =  103 bits (257), Expect = 5e-28
 Identities = 57/77 (74%), Positives = 68/77 (88%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRL+A CFDG KRLCHIRGK+RKKVW+N GDI+L+ LRD+QD+K D+ILKYTPDEA
Sbjct: 41  MLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTPDEA 100

Query: 61  RNLKTYGEFPETVRIND 77
           R LK+ GE PET +IN+
Sbjct: 101 RALKSKGEIPETTKINE 117

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5 Length = 102

 Score =  100 bits (249), Expect = 5e-27
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDE 59
           MLG  R+   C DG  RL  I G+L+ ++W+ +GD++++   + Q D K D+I +YT  +
Sbjct: 29  MLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQ 88

Query: 60  ARNLKTYGEFPETV 73
              LK  G   E +
Sbjct: 89  VEWLKRKGYLDELL 102

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 111

 Score =   99 bits (249), Expect = 8e-27
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIG-LRDYQDAKADVILKYTPDE 59
            GN   E     G + L  +  K RK +WI +GD +++  + + +  KA++      D 
Sbjct: 24 TPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDH 83

Query: 60 ARNLKTYGEFPE 71
           R+L+  G +PE
Sbjct: 84 VRSLQKEGFWPE 95

>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} Length = 79

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKY 55
           L N        +G K L HI GK+R+  + I   D +++ L  Y  ++  ++ +Y
Sbjct: 23 PLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRY 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 35/258 (13%), Positives = 77/258 (29%), Gaps = 68/258 (26%)

Query: 34  GDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVT------------- 80
            DI+ +    +     +   K   D  +++ +  E    +   D V+             
Sbjct: 19  KDILSVFEDAF---VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 81  ------FVEEGYDEDIEF-GDEISDDEEGNAVD-NLYLQMHMSKF---PWFSIHFKLSFL 129
                 FVEE    + +F    I  ++   ++   +Y++     +     F+ +  +S L
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRL 134

Query: 130 KKVGTV-SSIQEARPSYTLQYQNSAEVSYLC--------KGALLKKVLNSKNIAGGINKR 180
           +    +  ++ E RP+             +         K  +   V  S      +  +
Sbjct: 135 QPYLKLRQALLELRPA-----------KNVLIDGVLGSGKTWVALDVCLSY----KVQCK 179

Query: 181 FFKNRF--ARGNYNCQGLIVPKED----RIGKN---------QPFQENKNLKRVIRHLLA 225
                F     N N    ++        +I  N                +++  +R LL 
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 226 PKLDSSDTLHLDN-WISE 242
            K   +  L L N   ++
Sbjct: 240 SKPYENCLLVLLNVQNAK 257

>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5 Length = 71

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKY 55
           L N        +G     HI GK+RK  + I  GD + + L  Y  +K  ++ + 
Sbjct: 15 TLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRS 70

>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W Length = 71

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVI 52
           L N         G + L +I GK+R   + I  GD +++ +  Y   +  ++
Sbjct: 16 ALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
1d7q_A	143	Translation initiation factor 1A; OB-fold, beta-ba	100.0
2dgy_A	111	MGC11102 protein; EIF-1A, structural genomics, NPP	99.97
1jt8_A	102	EIF-1A, probable translation initiation factor 1A;	99.95
2oqk_A	117	Putative translation initiation factor EIF-1A; mal	99.93
3i4o_A	79	Translation initiation factor IF-1; cytoplasm, pro	99.83
1ah9_A	71	IF1, initiation factor 1; ribosome binding, protei	99.75
1hr0_W	71	Translation initiation factor; ribosomal subunit,	99.73
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.68
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.52
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	93.26
2k52_A	80	Uncharacterized protein MJ1198; metal-binding, zin	82.23

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5

Probab=100.00  E-value=3.9e-38  Score=262.94  Aligned_cols=103  Identities=72%  Similarity=1.172  Sum_probs=94.0

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCcccccccccc
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVT   80 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNEtdt   80 (276)
                      ||||++|+|+|+||+++||||||||||+|||++||+|+|+|||||++||+|||||+++|+++|+++|+||++|.+|++++
T Consensus        40 ~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~  119 (143)
T 1d7q_A           40 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT  119 (143)
T ss_dssp             ECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCS
T ss_pred             EcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeeccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCcccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCeeecCCCCCcccccc
Q psy2272          81 FVEEGYDEDIEFGDEISDDEEGNA  104 (276)
Q Consensus        81 fg~~~~dd~ieFd~~~d~~~d~~~  104 (276)
                      |+ ++++++++|++++++++|+|+
T Consensus       120 ~~-~~~~~~~~f~~~~~~~~~~~~  142 (143)
T 1d7q_A          120 FG-PGDDDEIQFDDIGDDDEDIDD  142 (143)
T ss_dssp             SS-CCCCCCCCCCCSCSSCCSCSC
T ss_pred             cc-CCCCccceeccCccchhcccc
Confidence            97 444778999776655444433

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.97  E-value=5.9e-31  Score=210.93  Aligned_cols=83  Identities=24%  Similarity=0.380  Sum_probs=77.3

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCC-CCeEEEEEecCHhHHHHHHHcCCCCccccccc-c
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDEARNLKTYGEFPETVRIND-T   78 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQ-D~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNE-t   78 (276)
                      ||||++|+|+|+||+++||||||||||+|||++||+|+|++|||| ++||+|+|||+++||++|+++|+||++|..++ .
T Consensus        24 ~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~qvk~L~k~g~wP~~F~~~~~~  103 (111)
T 2dgy_A           24 TPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEK  103 (111)
T ss_dssp             CCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEECCHHHHHHHHHHTCSCHHHHHHHTT
T ss_pred             eCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEEeCHHHHHHHHHcCCCChHHhhcccc
Confidence            799999999999999999999999999999999999999999999 89999999999999999999999999998553 4


Q ss_pred             ccccc
Q psy2272          79 VTFVE   83 (276)
Q Consensus        79 dtfg~   83 (276)
                      +++|+
T Consensus       104 ~~~~~  108 (111)
T 2dgy_A          104 HNSGP  108 (111)
T ss_dssp             CCSSS
T ss_pred             cCcCC
Confidence            45543

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5

Probab=99.95  E-value=1.1e-29  Score=201.28  Aligned_cols=70  Identities=36%  Similarity=0.765  Sum_probs=69.2

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCC-CCeEEEEEecCHhHHHHHHHcCCCC
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDEARNLKTYGEFP   70 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQ-D~KGDIIyRYt~DEIR~LKk~GeLP   70 (276)
                      ||||++|+|+|+||+++||||||||||+|||++||+|+|++|||| ++||+|+|||+++|+++|+++|+||
T Consensus        29 ~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~de~~~L~k~g~~p   99 (102)
T 1jt8_A           29 MLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQVEWLKRKGYLD   99 (102)
T ss_dssp             SSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSCSHHHHHHHHHHHH
T ss_pred             EcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccCCCCceEEEEEEeCHHHHHHHHHcCCCc
Confidence            699999999999999999999999999999999999999999999 8999999999999999999999999

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.93  E-value=8.1e-27  Score=186.72  Aligned_cols=77  Identities=74%  Similarity=1.332  Sum_probs=73.7

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCccccccc
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRIND   77 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNE   77 (276)
                      ++||++|+|+|+||++++||||||||++|||.+||+|+|+++||++.||+|+++|.++||++|+++|+||++|.|||
T Consensus        41 ~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~~~k~l~~~g~~p~~f~~~~  117 (117)
T 2oqk_A           41 MLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTPDEARALKSKGEIPETTKINE  117 (117)
T ss_dssp             EEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECCHHHHHHHHHTTSSCTTCCC--
T ss_pred             EcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEechHHHHHHHHcCCCCcccCccC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999985

>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5

Probab=99.83  E-value=2.2e-21  Score=148.10  Aligned_cols=56  Identities=27%  Similarity=0.460  Sum_probs=54.3

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT   56 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt   56 (276)
                      +|||++|.|+|+||++++||||||||| +|||.+||+|+|++||||++||+|||||.
T Consensus        23 ~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R~~   79 (79)
T 3i4o_A           23 PLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK   79 (79)
T ss_dssp             EETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred             EcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEEcC
Confidence            479999999999999999999999999 99999999999999999999999999994

>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5

Probab=99.75  E-value=6.2e-19  Score=129.05  Aligned_cols=56  Identities=27%  Similarity=0.400  Sum_probs=53.6

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT   56 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt   56 (276)
                      ++||+.|.|+|+||++++||||||||+ +|||.+||+|+|+++||++.||+|+|||+
T Consensus        15 ~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~~r~~   71 (71)
T 1ah9_A           15 TLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR   71 (71)
T ss_dssp             ECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred             EeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEEEEEC
Confidence            479999999999999999999999998 59999999999999999999999999985

>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W

Probab=99.73  E-value=3.2e-19  Score=131.10  Aligned_cols=55  Identities=22%  Similarity=0.398  Sum_probs=53.4

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEec
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKY   55 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRY   55 (276)
                      ++||+.|.|+|+||++++||||||||| +|||.+||+|+|+++||++.||+|+|||
T Consensus        16 ~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~~r~   71 (71)
T 1hr0_W           16 ALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYRK   71 (71)
T ss_dssp             CCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSCC
T ss_pred             EeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEEEeC
Confidence            589999999999999999999999998 9999999999999999999999999997

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.68  E-value=0.018  Score=51.45  Aligned_cols=52  Identities=19%  Similarity=0.191  Sum_probs=42.8

Q ss_pred             CceEEEEeCC---CCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecCH
Q psy2272           4 NGRLEAMCFD---GTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYTP   57 (276)
Q Consensus         4 NgrfEVeC~D---G~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt~   57 (276)
                      ++.|.|.+.+   |....|+++|+||+ ++....||.|.+++.+  +..|-|...+.+
T Consensus        20 ~~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R   75 (307)
T 1t9h_A           20 SGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKER   75 (307)
T ss_dssp             TTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCC
T ss_pred             CCEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEcch
Confidence            5789999887   88999999999997 6778899999998653  457888877643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.52  E-value=0.15  Score=46.64  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             CceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCC----CeEEEEEecCH
Q psy2272           4 NGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQD----AKADVILKYTP   57 (276)
Q Consensus         4 NgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD----~KGDIIyRYt~   57 (276)
                      ++.|.|...+|..+.|+++|++++   +..||.|.+++.+.+.    .+|-|+..+.+
T Consensus        57 ~~~~~v~~~~g~~~~~~~r~~~~~---~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R  111 (358)
T 2rcn_A           57 GMHADVESADGEVHRCNIRRTIRS---LVTGDRVVWRPGKAAAEGVNVKGIVEAVHER  111 (358)
T ss_dssp             TTEEEEEETTSCEEEEEECTTCCC---CCBTCEEEEECBC-------CCEEEEEECCC
T ss_pred             CCEEEEEeCCCcEEEEEecCCCCC---CCCCcEEEEEeCCCccccccccceEeEEeCC
Confidence            478999999999999999999986   8899999998754321    13878777643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=93.26  E-value=0.15  Score=44.27  Aligned_cols=47  Identities=21%  Similarity=0.123  Sum_probs=36.5

Q ss_pred             CceE--EEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEe
Q psy2272           4 NGRL--EAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILK   54 (276)
Q Consensus         4 Ngrf--EVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyR   54 (276)
                      ++.|  .|. .+|..+.|+++|++|+ .. ...||.|.+++++  +..|-|...
T Consensus        16 ~~~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~--~~~g~I~~i   65 (302)
T 2yv5_A           16 AQMIGVYLF-EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD--PNTFAIEEV   65 (302)
T ss_dssp             TTEEEEEET-TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE--TTEEEEEEE
T ss_pred             CCeEEEEEe-cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc--CCeEEEEee
Confidence            5777  555 7788999999999997 45 8899999999875  346655543

>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}

Probab=82.23  E-value=1.1  Score=32.01  Aligned_cols=52  Identities=23%  Similarity=0.367  Sum_probs=40.6

Q ss_pred             ceEEEEeCCCCEEEEEeccccccee-eeecCCEEEEEeccCCCCeEEEEEecCH
Q psy2272           5 GRLEAMCFDGTKRLCHIRGKLRKKV-WINQGDIILIGLRDYQDAKADVILKYTP   57 (276)
Q Consensus         5 grfEVeC~DG~kRLAhIpGKMRKKV-WIk~GDiVLVEprDYQD~KGDIIyRYt~   57 (276)
                      |.| |.+.+|..-++|++.=...++ .++.||.|.|.....+..+++|.+.+.+
T Consensus        20 G~f-V~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~   72 (80)
T 2k52_A           20 GAF-INLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIP   72 (80)
T ss_dssp             EEE-EEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred             EEE-EEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence            444 888889999999987433344 5889999999999998888888876643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1d7qa_	143	b.40.4.5 (A:) Translation initiation factor-1a, eI	6e-35
d1jt8a_	102	b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a	8e-29
d1ah9a_	71	b.40.4.5 (A:) Translational initiation factor 1, I	3e-16
d1hr0w_	71	b.40.4.5 (W:) Translational initiation factor 1, I	1e-15

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (303), Expect = 6e-35
 Identities = 74/101 (73%), Positives = 82/101 (81%), Gaps = 1/101 (0%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
           MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN  DIIL+GLRDYQD KADVILKY  DEA
Sbjct: 40  MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 99

Query: 61  RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
           R+LK YGE PE  +IN+T TF   G D++I+F D   DDE+
Sbjct: 100 RSLKAYGELPEHAKINETDTF-GPGDDDEIQFDDIGDDDED 139

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 102

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Archaeal initiation factor-1a, aIF1a
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  103 bits (259), Expect = 8e-29
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 1   MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDE 59
           MLG  R+   C DG  RL  I G+L+ ++W+ +GD++++   + Q D K D+I +YT  +
Sbjct: 29  MLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQ 88

Query: 60  ARNLKTYGEFPETV 73
              LK  G   E +
Sbjct: 89  VEWLKRKGYLDELL 102

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

 Score = 69.3 bits (170), Expect = 3e-16
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKY 55
           L N        +G     HI GK+RK  + I  GD + + L  Y  +K  ++ + 
Sbjct: 15 TLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRS 70

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

 Score = 68.1 bits (167), Expect = 1e-15
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 1  MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVI 52
           L N         G + L +I GK+R   + I  GD +++ +  Y   +  ++
Sbjct: 16 ALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1d7qa_	143	Translation initiation factor-1a, eIF1a {Human (Ho	99.97
d1jt8a_	102	Archaeal initiation factor-1a, aIF1a {Archaeon Met	99.93
d1ah9a_	71	Translational initiation factor 1, IF1 {Escherichi	99.87
d1hr0w_	71	Translational initiation factor 1, IF1 {Escherichi	99.83
d1u0la1	66	Probable GTPase EngC (YjeQ), N-terminal domain {Th	97.94
d1t9ha1	67	Probable GTPase EngC (YjeQ), N-terminal domain {Ba	97.89

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-32  Score=223.49  Aligned_cols=104  Identities=70%  Similarity=1.156  Sum_probs=97.5

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCcccccccccc
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVT   80 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNEtdt   80 (276)
                      ||||++|+|.|.||++|||+||||||+++||.+||+|||++|+|+++||||+|+|+++|+++|+++|+||+.|..++.++
T Consensus        40 ~lG~~~~~V~~~dg~~rl~~irgk~r~r~~i~~Gd~VlV~~rd~e~~K~DIl~~Y~~~e~~~L~~~~~ip~~~~~~~~~~  119 (143)
T d1d7qa_          40 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT  119 (143)
T ss_dssp             ECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCS
T ss_pred             EcCCCEEEEEECCCCEEEEEecCcceeEEEEeCCCEEEEeccCCcCcEEEEEEECCHHHHHHHHHCCCCChhhhhccccC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             cccCCCCCCeeecCCCCCcccccch
Q psy2272          81 FVEEGYDEDIEFGDEISDDEEGNAV  105 (276)
Q Consensus        81 fg~~~~dd~ieFd~~~d~~~d~~~i  105 (276)
                      ++.++ ++++.|++..++++|+|+|
T Consensus       120 ~~~~~-d~~i~F~~~~~dd~d~d~i  143 (143)
T d1d7qa_         120 FGPGD-DDEIQFDDIGDDDEDIDDI  143 (143)
T ss_dssp             SSCCC-CCCCCCCCSCSSCCSCSCC
T ss_pred             CCCcc-ccceeecCCCCCccccccC
Confidence            76555 7789999988888888775

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Archaeal initiation factor-1a, aIF1a
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=9.1e-28  Score=186.76  Aligned_cols=72  Identities=36%  Similarity=0.755  Sum_probs=69.8

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCC-CCeEEEEEecCHhHHHHHHHcCCCCcc
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDEARNLKTYGEFPET   72 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQ-D~KGDIIyRYt~DEIR~LKk~GeLPEe   72 (276)
                      ||||++|+|.|+||++|+|+|||||||++||+.||+|||++|||+ ++||||+|+|+++|+++|+++|+||+.
T Consensus        29 ~lG~~~~~V~c~dg~~rl~~irGK~Rk~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~~~ev~~L~~~~~ipe~  101 (102)
T d1jt8a_          29 MLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQVEWLKRKGYLDEL  101 (102)
T ss_dssp             SSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSCSHHHHHHHHHHHHHC
T ss_pred             EcCCCEEEEEECCCCEEEEEEcCCcceeeEecCCCEEEEEeeecCCCcEEEEEEECCHHHHHHHHHcCCCCCc
Confidence            799999999999999999999999999999999999999999999 469999999999999999999999974

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.8e-23  Score=153.92  Aligned_cols=56  Identities=27%  Similarity=0.400  Sum_probs=54.4

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT   56 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt   56 (276)
                      ||||++|+|+|+||++++||||||||| +|||.+||+|+|++||||++||||||||.
T Consensus        15 ~lg~~~f~V~l~ng~~~~a~i~Gkmrk~ri~i~~GD~V~Vel~pyd~~kgrIi~R~k   71 (71)
T d1ah9a_          15 TLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR   71 (71)
T ss_dssp             ECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred             EcCCCEEEEEeCCCCEEEEEccchhheeEEEecCCCEEEEEECccCCCcEEEEEEcC
Confidence            689999999999999999999999998 89999999999999999999999999984

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.2e-22  Score=149.11  Aligned_cols=54  Identities=22%  Similarity=0.418  Sum_probs=52.9

Q ss_pred             CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEe
Q psy2272           1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILK   54 (276)
Q Consensus         1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyR   54 (276)
                      +|||++|.|+|+||++++||||||||| +|||.+||+|+|++||||++||+||||
T Consensus        16 ~l~~~~f~V~l~ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel~pyd~~kgrIi~R   70 (71)
T d1hr0w_          16 ALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYR   70 (71)
T ss_dssp             CCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSC
T ss_pred             ECCCCEEEEEECCCCEEEEEecchhheeeEEecCCCEEEEEECccCCCcEEEEEc
Confidence            699999999999999999999999999 999999999999999999999999997

>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Probable GTPase EngC (YjeQ), N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=1.1e-05  Score=57.12  Aligned_cols=51  Identities=20%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             CceEEEEe-CCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272           4 NGRLEAMC-FDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT   56 (276)
Q Consensus         4 NgrfEVeC-~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt   56 (276)
                      ++.|.|++ ++|....|+++|+||+ ++.+..||.|.+++.+  +..|-|...+.
T Consensus        12 ~~~y~V~~~e~g~~~~c~~rG~lr~~~~~~~VGD~V~~~~~~--~~~g~I~~I~p   64 (66)
T d1u0la1          12 SNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLH   64 (66)
T ss_dssp             TTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEeeccccccCCccccCCEEEEEECC--CCeEEEEEEcC
Confidence            68899998 6799999999999998 6889999999999764  45788877654

>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Probable GTPase EngC (YjeQ), N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.89  E-value=1.3e-05  Score=56.99  Aligned_cols=51  Identities=20%  Similarity=0.201  Sum_probs=42.8

Q ss_pred             CceEEEEeC---CCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272           4 NGRLEAMCF---DGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT   56 (276)
Q Consensus         4 NgrfEVeC~---DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt   56 (276)
                      ++.|.|.+.   +|....|+++||||+ ++.+..||.|.+++.+  +..|-|...+.
T Consensus        11 ~~~y~V~~e~~~~g~~~~C~~RGk~r~~~~~p~VGD~V~~~~~~--~~~g~I~~I~p   65 (67)
T d1t9ha1          11 SGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKE   65 (67)
T ss_dssp             TTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECC
T ss_pred             CCEEEEEecccCCCcEEEEEEceeEecCCCccCcCcEEEEEEcc--CCeEEEEEEec
Confidence            678999997   688999999999998 6888899999999864  55787776553