Psyllid ID: psy2284

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MTTMANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETLDAKSGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA
Secondary Structure (PSIPRED)
ccccccccccccccHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHcccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccEcccccccccccEEEEEEcccccEEEcccccEEccccHHHHccccccEEEcc
Coil and Loop (DISEMBL)
MTTMANRLsgrikdankqRVLDEATRQRRARKALESlesdnfhddphadlvmnkkapkfqetldaksgsrkkkskSAEYYKLKTMeglfhktnQQNYIFRFRKSLAQMIEEDKalnsqgsayenaeakpskfpnrhfcavcgfpsnytcvpcgaryccvrclgthqdtrclkwta
Flexible Loop (DISEMBL)
mttmanrlsgrikdankqrvldeatRQRRARKAleslesdnfhddphaDLVMNKKAPKfqetldaksgsrkkksksAEYYKLKtmeglfhktnqQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLgthqdtrclkwta
Low Complexity Region (SEG)
MTTMANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETLDAksgsrkkksksAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA
Disordered region (IsUnstruct)
******************************************************************************YYKLKTMEGLFHKTNQQNYIFRFRKSLAQ**************************NRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKW**
Disordered Region (DISOPRED)
*******************************************************************************************************SLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA
Disordered Region (DISEMBL)
********SGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQE***************AEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA
Disordered Region (DISPRO)
*****************************ARKALESLESDNFHDDPHADLVMNKK***********************************KTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTTMANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETLDAKSGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q8R331	154	Zinc finger HIT domain-co	yes	N/A	0.828	0.941	0.487	2e-34
O43257	154	Zinc finger HIT domain-co	yes	N/A	0.84	0.954	0.482	3e-34
Q24JY4	154	Zinc finger HIT domain-co	yes	N/A	0.84	0.954	0.482	3e-34
Q54NW0	177	Zinc finger HIT domain-co	yes	N/A	0.285	0.282	0.48	3e-11
O59669	139	SWR1 complex subunit vps7	yes	N/A	0.685	0.863	0.308	3e-09
Q4U9I8	918	Protein SEY1 homolog OS=T	yes	N/A	0.268	0.051	0.389	3e-06

>sp|Q8R331|ZNHI1_MOUSE Zinc finger HIT domain-containing protein 1 OS=Mus musculus GN=Znhit1 PE=2 SV=1

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 99/166 (59%), Gaps = 21/166 (12%)

Query: 11  RIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLV-MNKKAPKFQETLDAKSGS 69
           R +D  ++RVLD A RQRR  + LE+LE+DNF DDPHA L  + K+ P+F +  D     
Sbjct: 9   RSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADTGK-- 66

Query: 70  RKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKP 129
            KKK    +++KL                 RFRK+   ++EE     S+G  Y  A A P
Sbjct: 67  -KKKKTRGDHFKL-----------------RFRKNFQALLEEQNLSASEGPNYLTACAGP 108

Query: 130 SKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
              P R FCAVCGFPS YTCV CGARYC VRCLGTHQ+TRCLKWT 
Sbjct: 109 PSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154

Seems to play a role in p53-mediated apoptosis induction.
Mus musculus (taxid: 10090)

>sp|O43257|ZNHI1_HUMAN Zinc finger HIT domain-containing protein 1 OS=Homo sapiens GN=ZNHIT1 PE=1 SV=1

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 100/168 (59%), Gaps = 21/168 (12%)

Query: 9   SGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLV-MNKKAPKFQETLDAKS 67
           S R +D  ++RVLD A RQRR  + LE+LE+DNF DDPHA L  + K+ P+F +  D   
Sbjct: 7   SVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADTGK 66

Query: 68  GSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEA 127
              KKK    +++KL                 RFRK+   ++EE     ++G  Y  A A
Sbjct: 67  ---KKKKTRGDHFKL-----------------RFRKNFQALLEEQNLSVAEGPNYLTACA 106

Query: 128 KPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
            P   P R FCAVCGFPS YTCV CGARYC VRCLGTHQ+TRCLKWT 
Sbjct: 107 GPPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154

Seems to play a role in p53-mediated apoptosis induction.

Homo sapiens (taxid: 9606)

>sp|Q24JY4|ZNHI1_BOVIN Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1 PE=2 SV=1

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 100/168 (59%), Gaps = 21/168 (12%)

Query: 9   SGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLV-MNKKAPKFQETLDAKS 67
           S R +D  ++RVLD A RQRR  + LE+LE+DNF DDPHA L  + K+ P+F +  D   
Sbjct: 7   SVRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADTGK 66

Query: 68  GSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEA 127
              KKK    +++KL                 RFRK+   ++EE     ++G  Y  A A
Sbjct: 67  ---KKKKTRGDHFKL-----------------RFRKNFQALLEEQNLSVAEGPNYLTACA 106

Query: 128 KPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
            P   P R FCAVCGFPS YTCV CGARYC VRCLGTHQ+TRCLKWT 
Sbjct: 107 GPPSRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154

Seems to play a role in p53-mediated apoptosis induction.

Bos taurus (taxid: 9913)

>sp|Q54NW0|ZNHI1_DICDI Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=znhit1 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 121 AYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRC 170
            Y + ++KPS FP RHFC++CG+   YTC  C +RYC ++C   H +TRC
Sbjct: 122 TYISVQSKPSIFPPRHFCSICGYIGAYTCKQCSSRYCSIKCFNYHNETRC 171

Dictyostelium discoideum (taxid: 44689)

>sp|O59669|VPS71_SCHPO SWR1 complex subunit vps71 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps71 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 65/162 (40%), Gaps = 42/162 (25%)

Query: 17  KQR-VLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPK--FQETLDAKSGSRKKK 73
           KQR V+D  TR+R+ ++ L  LE DNF D       +  + PK   Q  +   S  R   
Sbjct: 17  KQRSVVDPVTRERQLKRNLADLEKDNFSD-------IRFEIPKDLLQRRVLPISVRR--- 66

Query: 74  SKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFP 133
                                   I   RK+    ++E     +  S Y    AKPS  P
Sbjct: 67  ------------------------ILSSRKTFVNYLDE-----TPNSRYNTCVAKPSYKP 97

Query: 134 NRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
            R FC VCG+   Y C  CG  YC   C   H +TRC+K  A
Sbjct: 98  PRKFCNVCGYWGKYACQNCGTSYCSKGCEVIHSETRCMKVYA 139

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4U9I8|SEY1_THEAN Protein SEY1 homolog OS=Theileria annulata GN=TA08650 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 12/59 (20%)

Query: 120 SAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGAR--------YCCVRCLGTHQDTRC 170
           +AY +  A+P     RH C +CGF +NY C  C  R        YC +RCL  H +T C
Sbjct: 855 AAYASGPARP----QRHLCVICGFFANYKCRNCATRRIEAINSYYCSLRCLEVHNETNC 909

Cooperates with the reticulon proteins and tubule-shaping DP1 family proteins to generate and maintain the structure of the tubular endoplasmic reticulum network. Has GTPase activity, which is required for its function in ER organization.

Theileria annulata (taxid: 5874)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
307209703	155	Zinc finger HIT domain-containing protei	0.885	1.0	0.656	5e-61
307176131	154	Zinc finger HIT domain-containing protei	0.868	0.987	0.644	2e-59
322784465	154	hypothetical protein SINV_02359 [Solenop	0.868	0.987	0.639	1e-58
340712204	154	PREDICTED: zinc finger HIT domain-contai	0.88	1.0	0.639	5e-58
383851649	154	PREDICTED: zinc finger HIT domain-contai	0.88	1.0	0.633	2e-57
48096994	154	PREDICTED: zinc finger HIT domain-contai	0.88	1.0	0.639	6e-57
380017936	154	PREDICTED: zinc finger HIT domain-contai	0.88	1.0	0.633	1e-56
156548292	153	PREDICTED: zinc finger HIT domain-contai	0.874	1.0	0.610	2e-54
157167980	159	hypothetical protein AaeL_AAEL012896 [Ae	0.885	0.974	0.590	1e-53
242011980	157	zinc finger protein HIT domain-containin	0.897	1.0	0.571	1e-52

>gi|307209703|gb|EFN86561.1| Zinc finger HIT domain-containing protein 1 [Harpegnathos saltator]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 133/172 (77%), Gaps = 17/172 (9%)

Query: 4   MANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETL 63
           MA R SGRIKDA ++RVLD+A R+RR +KALE+LE DNFHDDPHADLVM+KK PKFQETL
Sbjct: 1   MAARESGRIKDAYQKRVLDDAARKRRQKKALEALEQDNFHDDPHADLVMSKKVPKFQETL 60

Query: 64  DAKSGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYE 123
           D++  SRKKK++SAEYYK                  RFRK+ AQ++EED  +N     Y 
Sbjct: 61  DSRDASRKKKTRSAEYYKQ-----------------RFRKTFAQLVEEDLNVNPNPPNYA 103

Query: 124 NAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
            A+A PS+FP+RHFCAVCGFPSNYTC+PCGARYCCV+CLGTH DTRCLKWTA
Sbjct: 104 CAQASPSRFPDRHFCAVCGFPSNYTCIPCGARYCCVKCLGTHLDTRCLKWTA 155

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176131|gb|EFN65829.1| Zinc finger HIT domain-containing protein 1 [Camponotus floridanus]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 129/169 (76%), Gaps = 17/169 (10%)

Query: 7   RLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETLDAK 66
           R SGRIKDA ++RVLD+  R+RR +KALE+LE DNFHDDPHADLVM+KK PKFQETLD +
Sbjct: 3   RESGRIKDAFQKRVLDDVARKRRQKKALEALEQDNFHDDPHADLVMSKKVPKFQETLDNR 62

Query: 67  SGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAE 126
            GSRKKK++SAEYYK                  RFRK+ AQ++EED  +NS    Y  A+
Sbjct: 63  GGSRKKKTRSAEYYKQ-----------------RFRKTFAQLVEEDLNINSNPPNYTCAQ 105

Query: 127 AKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
           A PS+FP RHFCAVCGFPSNYTC+PCGARYCC++CLGTH DTRC+KWT 
Sbjct: 106 APPSRFPERHFCAVCGFPSNYTCIPCGARYCCIKCLGTHLDTRCMKWTV 154

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784465|gb|EFZ11417.1| hypothetical protein SINV_02359 [Solenopsis invicta]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 128/169 (75%), Gaps = 17/169 (10%)

Query: 7   RLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETLDAK 66
           R SGRIKDA ++R+LD+A R+RR +KALE+LE DNFHDDPHADLVM+KK PKFQETLD +
Sbjct: 3   RESGRIKDACQKRILDDAARKRRQKKALEALEQDNFHDDPHADLVMSKKVPKFQETLDNR 62

Query: 67  SGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAE 126
           SGSRKKK++SAEYYK                  RFRK+ AQ++EED  +N     Y  A+
Sbjct: 63  SGSRKKKTRSAEYYKQ-----------------RFRKTFAQLVEEDLNVNPNPPNYACAQ 105

Query: 127 AKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
             PS+ P RHFCAVCGFPSNYTC+PCGARYCCV+CLGTH DTRC+KWT 
Sbjct: 106 VPPSRLPERHFCAVCGFPSNYTCIPCGARYCCVKCLGTHLDTRCMKWTV 154

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712204|ref|XP_003394653.1| PREDICTED: zinc finger HIT domain-containing protein 1-like [Bombus terrestris] gi|350413935|ref|XP_003490156.1| PREDICTED: zinc finger HIT domain-containing protein 1-like [Bombus impatiens]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/172 (63%), Positives = 131/172 (76%), Gaps = 18/172 (10%)

Query: 4   MANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETL 63
           MA R SGRIKDA ++RVLDEA R+RR +KALE+LE DNFHDDPHADLVM+KK PKFQETL
Sbjct: 1   MAARESGRIKDAYQKRVLDEAARKRRQKKALEALEQDNFHDDPHADLVMSKKVPKFQETL 60

Query: 64  DAKSGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYE 123
           D + G R+KK++SAEYYK                  RFRK+ AQ++EED  +N     Y 
Sbjct: 61  DNRGG-RRKKTRSAEYYKQ-----------------RFRKTFAQLVEEDLNINPNPPNYA 102

Query: 124 NAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
           +A+A+PS+FP R FCAVCGFPSNYTC+PCGARYC ++CLGTH DTRCLKWTA
Sbjct: 103 SAQAQPSRFPERQFCAVCGFPSNYTCIPCGARYCSMKCLGTHLDTRCLKWTA 154

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851649|ref|XP_003701344.1| PREDICTED: zinc finger HIT domain-containing protein 1-like [Megachile rotundata]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 130/172 (75%), Gaps = 18/172 (10%)

Query: 4   MANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETL 63
           MA R SGR+KDA ++RVLDEA R+RR +KALE+LE DNFHDDPHADLVM+KK PKFQETL
Sbjct: 1   MAARESGRVKDAYQKRVLDEAARKRRQKKALEALEQDNFHDDPHADLVMSKKVPKFQETL 60

Query: 64  DAKSGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYE 123
           D + G R+KK++SAEYYK                  RFRK+ AQ++EED  +N     Y 
Sbjct: 61  DNRGG-RRKKTRSAEYYKQ-----------------RFRKTFAQLVEEDLNVNPNPPNYA 102

Query: 124 NAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
           +A+A PS+FP R FCAVCGFPSNYTC+PCGARYC ++CLGTH DTRCLKWTA
Sbjct: 103 SAQAPPSRFPERQFCAVCGFPSNYTCIPCGARYCSMKCLGTHLDTRCLKWTA 154

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48096994|ref|XP_391822.1| PREDICTED: zinc finger HIT domain-containing protein 1-like [Apis mellifera]

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 110/172 (63%), Positives = 129/172 (75%), Gaps = 18/172 (10%)

Query: 4   MANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETL 63
           MA R SGRIKDA ++RVLDEA R+RR +KALE+LE DNFHDDPHADLVM+KK PKFQETL
Sbjct: 1   MAARESGRIKDAYQKRVLDEAARKRRQKKALEALEQDNFHDDPHADLVMSKKVPKFQETL 60

Query: 64  DAKSGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYE 123
           D + G R+KK++SAEYYK                  RFRK+ AQ++EED  +N     Y 
Sbjct: 61  DNRGG-RRKKTRSAEYYKQ-----------------RFRKTFAQLVEEDLNINPNPPNYA 102

Query: 124 NAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
           +A+A  SKFP R FCAVCGFPSNYTC+PCGARYC ++CLGTH DTRCLKWTA
Sbjct: 103 SAQAPVSKFPERQFCAVCGFPSNYTCIPCGARYCSMKCLGTHLDTRCLKWTA 154

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017936|ref|XP_003692898.1| PREDICTED: zinc finger HIT domain-containing protein 1-like [Apis florea]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 129/172 (75%), Gaps = 18/172 (10%)

Query: 4   MANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETL 63
           MA R SGRIKDA ++RVLDEA R+RR +KALE+LE DNFHDDPHADLVM+KK PKFQETL
Sbjct: 1   MAARESGRIKDAYQKRVLDEAARKRRQKKALEALEQDNFHDDPHADLVMSKKVPKFQETL 60

Query: 64  DAKSGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYE 123
           D + G R+KK++SAEYYK                  RFRK+ AQ++EED  +N     Y 
Sbjct: 61  DNRGG-RRKKTRSAEYYKQ-----------------RFRKTFAQLVEEDLNINPNPPNYA 102

Query: 124 NAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
           +A+A  S+FP R FCAVCGFPSNYTC+PCGARYC ++CLGTH DTRCLKWTA
Sbjct: 103 SAQAPASRFPERQFCAVCGFPSNYTCIPCGARYCSMKCLGTHLDTRCLKWTA 154

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548292|ref|XP_001606285.1| PREDICTED: zinc finger HIT domain-containing protein 1-like isoform 1 [Nasonia vitripennis] gi|345486007|ref|XP_003425384.1| PREDICTED: zinc finger HIT domain-containing protein 1-like isoform 2 [Nasonia vitripennis]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/172 (61%), Positives = 127/172 (73%), Gaps = 19/172 (11%)

Query: 4   MANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETL 63
           MA R SGRIKDA ++R+LDE +R+RR +KALE+LE DNFH+DPHADLVM+KKAPKFQE  
Sbjct: 1   MAGRESGRIKDAIQKRILDEDSRKRRQKKALEALEQDNFHEDPHADLVMSKKAPKFQE-- 58

Query: 64  DAKSGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYE 123
           D K+ SRK+K++SAEY+K                  RFRK+  Q++EED   NS G  Y 
Sbjct: 59  DNKNTSRKRKTRSAEYFKQ-----------------RFRKNFLQLVEEDLNYNSNGPNYS 101

Query: 124 NAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
            A+A PS +P RHFCAVCGFPS YTC+PCGARYC  +CLGTH DTRC+KWTA
Sbjct: 102 TAQAPPSCYPERHFCAVCGFPSTYTCIPCGARYCSTKCLGTHLDTRCMKWTA 153

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167980|ref|XP_001663032.1| hypothetical protein AaeL_AAEL012896 [Aedes aegypti] gi|157167986|ref|XP_001663035.1| hypothetical protein AaeL_AAEL012898 [Aedes aegypti] gi|108870676|gb|EAT34901.1| AAEL012896-PA [Aedes aegypti] gi|108870679|gb|EAT34904.1| AAEL012898-PA [Aedes aegypti]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 127/176 (72%), Gaps = 21/176 (11%)

Query: 4   MANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETL 63
           MA+R SGRI++A+K+RVLD+A+R+RRARKALE+LE DN+H+DPHADLVM+KK PKFQ+ +
Sbjct: 1   MASRESGRIREADKKRVLDDASRKRRARKALEALEQDNYHEDPHADLVMSKKIPKFQDNM 60

Query: 64  DAKSGS----RKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQG 119
           D  S S    + K+SK AEYY+ K                 +RK+  Q++EEDK     G
Sbjct: 61  DGVSSSNTKKKAKRSKGAEYYRAK-----------------YRKNFPQLLEEDKMQRPDG 103

Query: 120 SAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
             Y  A A+PSK P RHFCAVCGFPS+YTC  CG RYC VRCLGTHQDTRCLKWTA
Sbjct: 104 PNYFTAAAQPSKLPERHFCAVCGFPSSYTCTACGTRYCSVRCLGTHQDTRCLKWTA 159

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011980|ref|XP_002426721.1| zinc finger protein HIT domain-containing protein, putative [Pediculus humanus corporis] gi|212510892|gb|EEB13983.1| zinc finger protein HIT domain-containing protein, putative [Pediculus humanus corporis]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 126/175 (72%), Gaps = 18/175 (10%)

Query: 1   MTTMANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQ 60
           M    +R S R+K+ N +R+LDEA+R+RRARKA+E+LE DNFH+DPHADLVM+KK PKF 
Sbjct: 1   MVAKISRESSRLKENNSRRILDEASRKRRARKAVEALEQDNFHNDPHADLVMSKKLPKFN 60

Query: 61  ETLDAKSGSRKKKSKSAEYYKLKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGS 120
           + LD K+  R++KSKS+EYY+                  R+RK+  Q++EE+   N +  
Sbjct: 61  DNLDLKT-RRRRKSKSSEYYRQ-----------------RYRKTFQQLVEEESYSNYEKP 102

Query: 121 AYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
            Y  A+A PS+ P RHFCAVCGFPSNYTC+PCGARYCCV CLGTH DTRCLKWTA
Sbjct: 103 NYITAQAPPSELPERHFCAVCGFPSNYTCIPCGARYCCVLCLGTHLDTRCLKWTA 157

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
ZFIN|ZDB-GENE-050417-272	154	znhit1 "zinc finger, HIT-type	0.48	0.545	0.642	1.1e-40
WB|WBGene00016992	194	zhit-1 [Caenorhabditis elegans	0.931	0.840	0.410	8.2e-28
RGD|2322870	154	Znhit1 "zinc finger, HIT-type	0.48	0.545	0.595	6.8e-24
MGI|MGI:1917353	154	Znhit1 "zinc finger, HIT domai	0.48	0.545	0.595	6.8e-24
UNIPROTKB|Q24JY4	154	ZNHIT1 "Zinc finger HIT domain	0.48	0.545	0.583	1.8e-23
UNIPROTKB|O43257	154	ZNHIT1 "Zinc finger HIT domain	0.48	0.545	0.583	1.8e-23
FB|FBgn0031668	151	CG31917 [Drosophila melanogast	0.52	0.602	0.526	1.5e-21
POMBASE|SPBC29A3.05	139	vps71 "Swr1 complex subunit Vp	0.4	0.503	0.386	8.4e-16
DICTYBASE|DDB_G0284961	177	DDB_G0284961 "HIT-type zinc fi	0.28	0.276	0.489	5.7e-15
TAIR|locus:505006661	171	SEF "SERRATED LEAVES AND EARLY	0.554	0.567	0.352	1.9e-12

ZFIN|ZDB-GENE-050417-272 znhit1 "zinc finger, HIT-type containing 1" [Danio rerio (taxid:7955)]

 Score = 310 (114.2 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 54/84 (64%), Positives = 63/84 (75%)

Query:    91 KTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCV 150
             KT   ++  RFRK+   ++EE+    S+G  Y  A A+PSK P RHFCAVCGFPSNYTCV
Sbjct:    70 KTRGDHFKQRFRKNFQTLLEEEDLSVSEGPNYLTACAEPSKIPQRHFCAVCGFPSNYTCV 129

Query:   151 PCGARYCCVRCLGTHQDTRCLKWT 174
              CGARYCCVRCLGTH +TRCLKWT
Sbjct:   130 SCGARYCCVRCLGTHHETRCLKWT 153

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00016992 zhit-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 76/185 (41%), Positives = 100/185 (54%)

Query:     7 RLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETLDAX 66
             R S RI +    R LDE  R+ R  + L+ LE DN HDDPHA+LV NK APKF + +   
Sbjct:    16 RASSRISNLEGNRTLDENARRNRRNRQLDGLEQDNSHDDPHANLVWNKNAPKFDDEM--- 72

Query:    67 XXXXXXXXXXAEYYKLKTMEGLFH--KTNQQNYI---F---RFRKSL-AQMIEEDKA-LN 116
                       A+  K +   G+ H  K  ++      F   RF+KS  A +IE+ KA L+
Sbjct:    73 --IGGPSAKKAKKVK-EDKSGIVHGEKARRRKLARPEFNKQRFKKSFNAHVIEQSKAILD 129

Query:   117 S------QGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRC 170
             S      + +AY+ + A PS+ P R FCAVCG  S Y C  CGA+YC + C   H DTRC
Sbjct:   130 SAEPDYRRVNAYQLSSAPPSEKPARKFCAVCGIISKYCCTRCGAKYCSLPCRDVHNDTRC 189

Query:   171 LKWTA 175
             +KW A
Sbjct:   190 MKWLA 194

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

RGD|2322870 Znhit1 "zinc finger, HIT-type containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 50/84 (59%), Positives = 57/84 (67%)

Query:    91 KTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCV 150
             KT   ++  RFRK+   ++EE     S+G  Y  A A P   P R FCAVCGFPS YTCV
Sbjct:    70 KTRGDHFKLRFRKNFQALLEEQNLSASEGPNYLTACAGPPSRPQRPFCAVCGFPSPYTCV 129

Query:   151 PCGARYCCVRCLGTHQDTRCLKWT 174
              CGARYC VRCLGTHQ+TRCLKWT
Sbjct:   130 SCGARYCTVRCLGTHQETRCLKWT 153

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0031063 "regulation of histone deacetylation" evidence=ISO

GO:0042129 "regulation of T cell proliferation" evidence=ISO

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0070317 "negative regulation of G0 to G1 transition" evidence=ISO

MGI|MGI:1917353 Znhit1 "zinc finger, HIT domain containing 1" [Mus musculus (taxid:10090)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 50/84 (59%), Positives = 57/84 (67%)

Query:    91 KTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCV 150
             KT   ++  RFRK+   ++EE     S+G  Y  A A P   P R FCAVCGFPS YTCV
Sbjct:    70 KTRGDHFKLRFRKNFQALLEEQNLSASEGPNYLTACAGPPSRPQRPFCAVCGFPSPYTCV 129

Query:   151 PCGARYCCVRCLGTHQDTRCLKWT 174
              CGARYC VRCLGTHQ+TRCLKWT
Sbjct:   130 SCGARYCTVRCLGTHQETRCLKWT 153

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0031063 "regulation of histone deacetylation" evidence=IDA

GO:0042129 "regulation of T cell proliferation" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

GO:0070317 "negative regulation of G0 to G1 transition" evidence=IDA

UNIPROTKB|Q24JY4 ZNHIT1 "Zinc finger HIT domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 49/84 (58%), Positives = 57/84 (67%)

Query:    91 KTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCV 150
             KT   ++  RFRK+   ++EE     ++G  Y  A A P   P R FCAVCGFPS YTCV
Sbjct:    70 KTRGDHFKLRFRKNFQALLEEQNLSVAEGPNYLTACAGPPSRPQRPFCAVCGFPSPYTCV 129

Query:   151 PCGARYCCVRCLGTHQDTRCLKWT 174
              CGARYC VRCLGTHQ+TRCLKWT
Sbjct:   130 SCGARYCTVRCLGTHQETRCLKWT 153

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|O43257 ZNHIT1 "Zinc finger HIT domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 49/84 (58%), Positives = 57/84 (67%)

Query:    91 KTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCV 150
             KT   ++  RFRK+   ++EE     ++G  Y  A A P   P R FCAVCGFPS YTCV
Sbjct:    70 KTRGDHFKLRFRKNFQALLEEQNLSVAEGPNYLTACAGPPSRPQRPFCAVCGFPSPYTCV 129

Query:   151 PCGARYCCVRCLGTHQDTRCLKWT 174
              CGARYC VRCLGTHQ+TRCLKWT
Sbjct:   130 SCGARYCTVRCLGTHQETRCLKWT 153

GO:0046872 "metal ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0031668 CG31917 [Drosophila melanogaster (taxid:7227)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 50/95 (52%), Positives = 64/95 (67%)

Query:    82 LKT-MEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAV 140
             LKT  E    +   + ++ ++RK+  Q++EEDK  + Q + YE+A A   + P RHFCAV
Sbjct:    60 LKTGKEKKGKRKGAEYFLVKYRKNFQQLLEEDK--DKQPN-YESAAAPAPQKPLRHFCAV 116

Query:   141 CGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
             CG  S Y+C  CG RYCCVRCL THQDTRCLKWTA
Sbjct:   117 CGNFSLYSCTACGTRYCCVRCLQTHQDTRCLKWTA 151

GO:0048812 "neuron projection morphogenesis" evidence=IMP

POMBASE|SPBC29A3.05 vps71 "Swr1 complex subunit Vps71" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 141 (54.7 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
 Identities = 29/75 (38%), Positives = 36/75 (48%)

Query:    98 IFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYC 157
             I   RK+    ++E     +  S Y    AKPS  P R FC VCG+   Y C  CG  YC
Sbjct:    67 ILSSRKTFVNYLDE-----TPNSRYNTCVAKPSYKPPRKFCNVCGYWGKYACQNCGTSYC 121

Query:   158 CVRCLGTHQDTRCLK 172
                C   H +TRC+K
Sbjct:   122 SKGCEVIHSETRCMK 136

GO:0000812 "Swr1 complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IPI

GO:0043486 "histone exchange" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0284961 DDB_G0284961 "HIT-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 166 (63.5 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query:   122 YENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRC 170
             Y + ++KPS FP RHFC++CG+   YTC  C +RYC ++C   H +TRC
Sbjct:   123 YISVQSKPSIFPPRHFCSICGYIGAYTCKQCSSRYCSIKCFNYHNETRC 171

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:505006661 SEF "SERRATED LEAVES AND EARLY FLOWERING" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 36/102 (35%), Positives = 55/102 (53%)

Query:    79 YYKLKTMEGLFHKTNQQNYIFRFR--KSLAQMIEED--KALNSQGSAY-ENAEAKPSKFP 133
             Y + K  +G   KT Q   +   +  KS  ++++E   ++L S    Y + A   PS   
Sbjct:    70 YLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYLKAAVGPPSSSS 129

Query:   134 NRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWTA 175
              R+FC+VCG+ + Y C  CG R+C +RC   H+DTRC K+ A
Sbjct:   130 RRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009909 "regulation of flower development" evidence=RCA;IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0048638 "regulation of developmental growth" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IGI;RCA

GO:0006338 "chromatin remodeling" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43257	ZNHI1_HUMAN	No assigned EC number	0.4821	0.84	0.9545	yes	N/A
Q24JY4	ZNHI1_BOVIN	No assigned EC number	0.4821	0.84	0.9545	yes	N/A
Q8R331	ZNHI1_MOUSE	No assigned EC number	0.4879	0.8285	0.9415	yes	N/A
O59669	VPS71_SCHPO	No assigned EC number	0.3086	0.6857	0.8633	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
pfam04438	30	pfam04438, zf-HIT, HIT zinc finger	1e-08
COG5195	118	COG5195, COG5195, Uncharacterized conserved protei	0.004

>gnl|CDD|203013 pfam04438, zf-HIT, HIT zinc finger

 Score = 48.0 bits (115), Expect = 1e-08
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 135 RHFCAVCGFPSNYTCVPCGARYCCVRCL 162
           R  C+VCG PS Y C  CG RYC + C 
Sbjct: 2   RKLCSVCGNPSKYRCPRCGVRYCSLECY 29

This presumed zinc finger contains up to 6 cysteine residues that could coordinate zinc. The domain is named after the HIT protein. This domain is also found in the Thyroid receptor interacting protein 3 (TRIP-3) that specifically interacts with the ligand binding domain of the thyroid receptor. Length = 30

>gnl|CDD|227522 COG5195, COG5195, Uncharacterized conserved protein [Function unknown]

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 100 RFRKSLAQMIEEDKALNSQGSA-YENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARY 156
           R  K+L Q+I      N      Y + EA PS  P   +C V G P+ YTC   G RY
Sbjct: 30  RRFKTLRQLIPRLTIENESSKHRYLSIEAPPSVKPRMKYCDVTGLPAPYTCPNTGLRY 87

Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG3362|consensus	156		100.0
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	99.22
COG5195	118	Uncharacterized conserved protein [Function unknow	97.34
KOG4137|consensus	102		97.3
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	95.59
KOG1710|consensus	396		94.41
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	93.28
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	92.41
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	86.85
cd00730	50	rubredoxin Rubredoxin; nonheme iron binding domain	83.33
PF12387	200	Peptidase_C74: Pestivirus NS2 peptidase; InterPro:	83.25
PF00301	47	Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubred	83.19
PLN00206	518	DEAD-box ATP-dependent RNA helicase; Provisional	82.81
PRK00420	112	hypothetical protein; Validated	81.04
TIGR02487	579	NrdD anaerobic ribonucleoside-triphosphate reducta	80.9
PF13248	26	zf-ribbon_3: zinc-ribbon domain	80.37

>KOG3362|consensus

Probab=100.00  E-value=2e-53  Score=340.32  Aligned_cols=154  Identities=51%  Similarity=0.909  Sum_probs=139.9

Q ss_pred             cccccccccccccccccccCCHHHHHHHHHHHHHhhhCCCCCCCCCccccccccCCcchhhhcccccccccccchhHHHH
Q psy2284           2 TTMANRLSGRIKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETLDAKSGSRKKKSKSAEYYK   81 (175)
Q Consensus         2 ~~~~~R~s~R~k~~~~~rvlD~~~R~rr~~~rLdaLE~DN~~ddp~a~l~~~k~~pkf~d~~~~~~~~kkkk~k~~~~~k   81 (175)
                      +.|..|.|.|+++.+++|+||+++|+++.+++||+||+|||+|||||+|+|.+..|+|.+.+.++ ..+++++.++++++
T Consensus         3 ~~~e~r~s~r~~~~~~rRvlD~~ar~rr~~r~l~~Le~Dn~~ddpha~l~~~k~~p~f~d~l~~G-kr~~~~~~~~~~~~   81 (156)
T KOG3362|consen    3 HSFEERASQRIKDQEQRRVLDLNARQRRDNRNLEALEQDNFHDDPHASLVKPKQLPKFDDDLMGG-KRKKQKSYKSEKFK   81 (156)
T ss_pred             cchHHHHHHHHhhhhhccccchHHHHhhhhhhhHHHhhhccCCCcccccccccccccccHHHhcc-hhhhccccccchhh
Confidence            45678999999999999999999999999999999999999999999999999999999998754 22333445567776


Q ss_pred             hhhhhcccccccchhhhhhccccHHHHHHHhhhccCCCCCccccccCCCCCCCcccceecCCCCceecCCCCCccccccc
Q psy2284          82 LKTMEGLFHKTNQQNYIFRFRKSLAQMIEEDKALNSQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRC  161 (175)
Q Consensus        82 ~~~~~~~~~~~~~~~~ilr~rKnf~~lleE~~~~~~~~p~Y~~a~a~ps~~P~r~~C~VCG~~~~YtC~~Cg~ryCS~~C  161 (175)
                      +                 ++||||++||||+.+.-...|+|.++.|+|+.+|.|+||+||||||+|+|++||++|||+.|
T Consensus        82 ~-----------------~~RKnf~~~Ldea~~~~~k~~~Y~~~~a~p~~KP~r~fCaVCG~~S~ysC~~CG~kyCsv~C  144 (156)
T KOG3362|consen   82 L-----------------RFRKNFQALLDEALLNLMKNPNYHTAYAKPSFKPLRKFCAVCGYDSKYSCVNCGTKYCSVRC  144 (156)
T ss_pred             h-----------------hHHHHHHHHHHccchhhhhccchhhcccCCCCCCcchhhhhcCCCchhHHHhcCCceeechh
Confidence            5                 99999999999998744578999999999999999999999999999999999999999999


Q ss_pred             cccccccccccc
Q psy2284         162 LGTHQDTRCLKW  173 (175)
Q Consensus       162 ~~~H~etRC~K~  173 (175)
                      .++|+||||+||
T Consensus       145 ~~~HneTRC~kw  156 (156)
T KOG3362|consen  145 LKTHNETRCMKW  156 (156)
T ss_pred             hhhccccccccC
Confidence            999999999999

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.22  E-value=1.3e-12  Score=79.81  Aligned_cols=30  Identities=50%  Similarity=1.326  Sum_probs=23.9

Q ss_pred             CcccceecCCCCceecCCCCCccccccccc
Q psy2284         134 NRHFCAVCGFPSNYTCVPCGARYCCVRCLG  163 (175)
Q Consensus       134 ~r~~C~VCG~~~~YtC~~Cg~ryCS~~C~~  163 (175)
                      ++.+|+|||++++|+||+||.+|||+.|++
T Consensus         1 ~~~~C~vC~~~~kY~Cp~C~~~~CSl~C~k   30 (30)
T PF04438_consen    1 PRKLCSVCGNPAKYRCPRCGARYCSLACYK   30 (30)
T ss_dssp             --EEETSSSSEESEE-TTT--EESSHHHHH
T ss_pred             CcCCCccCcCCCEEECCCcCCceeCcEeEC
Confidence            578999999999999999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>COG5195 Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.00013  Score=56.83  Aligned_cols=57  Identities=39%  Similarity=0.598  Sum_probs=47.2

Q ss_pred             cccHHHHHHHhhhcc-CCCCCccccccCCCCCCCcccceecCCCCceecCCCCCcccc
Q psy2284         102 RKSLAQMIEEDKALN-SQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCC  158 (175)
Q Consensus       102 rKnf~~lleE~~~~~-~~~p~Y~~a~a~ps~~P~r~~C~VCG~~~~YtC~~Cg~ryCS  158 (175)
                      -|++.+||..+.+++ +.--+|+.+.||||..|.-++|-|=|-++-||||.=|.||=-
T Consensus        32 ~ktlrQli~~~~i~ne~sk~~Y~sieappSv~P~~KyCDvTGL~a~Yt~P~t~lrYhn   89 (118)
T COG5195          32 FKTLRQLIPRLTIENESSKHRYLSIEAPPSVKPRMKYCDVTGLPAPYTCPNTGLRYHN   89 (118)
T ss_pred             hhhHHHHccccccccccccceeEeecCCCccccccccccccCCcccccCCCcCceecc
Confidence            456667777665543 234589999999999999999999999999999999999843

>KOG4137|consensus

Probab=97.30  E-value=0.00026  Score=54.26  Aligned_cols=44  Identities=34%  Similarity=0.611  Sum_probs=40.1

Q ss_pred             CCCCCccccccCCCCCCCcccceecCCCCceecCCCCCcccccc
Q psy2284         117 SQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVR  160 (175)
Q Consensus       117 ~~~p~Y~~a~a~ps~~P~r~~C~VCG~~~~YtC~~Cg~ryCS~~  160 (175)
                      ..-++|++..||||..|.-+.|-|=|-++-|+||.=|.||=+..
T Consensus        32 ~~k~tYfsi~appSv~PakKycDvTGLpapYtdP~t~Lry~nae   75 (102)
T KOG4137|consen   32 EKKHTYFSIEAPPSVKPAKKYCDVTGLPAPYTDPNTGLRYHNAE   75 (102)
T ss_pred             cccCceEEecCCCccccchhhccccCCcccccCCCccceeccHH
Confidence            45689999999999999999999999999999999999986544

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.59  E-value=0.0037  Score=38.78  Aligned_cols=29  Identities=38%  Similarity=0.923  Sum_probs=24.2

Q ss_pred             ceecCCCCceecCCC-CCcccccccccccc
Q psy2284         138 CAVCGFPSNYTCVPC-GARYCCVRCLGTHQ  166 (175)
Q Consensus       138 C~VCG~~~~YtC~~C-g~ryCS~~C~~~H~  166 (175)
                      |.+||..+.-.|++| ...|||..|...|.
T Consensus         1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w   30 (37)
T PF01753_consen    1 CAVCGKPALKRCSRCKSVYYCSEECQRADW   30 (37)
T ss_dssp             -TTTSSCSSEEETTTSSSEESSHHHHHHHH
T ss_pred             CcCCCCCcCCcCCCCCCEEecCHHHHHHHH
Confidence            788998776699999 66899999998775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>KOG1710|consensus

Probab=94.41  E-value=0.0072  Score=54.90  Aligned_cols=35  Identities=31%  Similarity=0.821  Sum_probs=29.4

Q ss_pred             CCcccceecCCCC-ceecCCCC-Cccccccccccccc
Q psy2284         133 PNRHFCAVCGFPS-NYTCVPCG-ARYCCVRCLGTHQD  167 (175)
Q Consensus       133 P~r~~C~VCG~~~-~YtC~~Cg-~ryCS~~C~~~H~e  167 (175)
                      ..-.||++||-+| +-+|..|- .-||+..|.+.|.-
T Consensus       317 ~d~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf  353 (396)
T KOG1710|consen  317 ADCQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWF  353 (396)
T ss_pred             EecccccccCCCCccchhhhhHHHHHHHHHHHHhhhH
Confidence            3457999999776 66699998 78999999999964

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=93.28  E-value=0.045  Score=37.98  Aligned_cols=27  Identities=30%  Similarity=0.759  Sum_probs=22.2

Q ss_pred             cceecCC----CCceecCCCCCc-cccccccc
Q psy2284         137 FCAVCGF----PSNYTCVPCGAR-YCCVRCLG  163 (175)
Q Consensus       137 ~C~VCG~----~~~YtC~~Cg~r-yCS~~C~~  163 (175)
                      +|.||+.    ...|.||.||.+ |||..-..
T Consensus         1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~   32 (55)
T PF13824_consen    1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWE   32 (55)
T ss_pred             CCCCCccccccccCCcCCCCCCcCccCHHHHH
Confidence            6899998    889999999997 58876543

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=92.41  E-value=0.061  Score=32.91  Aligned_cols=20  Identities=40%  Similarity=1.090  Sum_probs=15.9

Q ss_pred             ccceecCCC-----CceecCCCCCc
Q psy2284         136 HFCAVCGFP-----SNYTCVPCGAR  155 (175)
Q Consensus       136 ~~C~VCG~~-----~~YtC~~Cg~r  155 (175)
                      ..|.||||.     ....||.||..
T Consensus         2 ~~C~~CGy~y~~~~~~~~CP~Cg~~   26 (33)
T cd00350           2 YVCPVCGYIYDGEEAPWVCPVCGAP   26 (33)
T ss_pred             EECCCCCCEECCCcCCCcCcCCCCc
Confidence            579999954     46789999974

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=86.85  E-value=0.29  Score=30.36  Aligned_cols=20  Identities=40%  Similarity=0.978  Sum_probs=15.3

Q ss_pred             ccceecCCC--C---ceecCCCCCc
Q psy2284         136 HFCAVCGFP--S---NYTCVPCGAR  155 (175)
Q Consensus       136 ~~C~VCG~~--~---~YtC~~Cg~r  155 (175)
                      ..|.||||.  +   ...||.||..
T Consensus         3 ~~C~~CG~i~~g~~~p~~CP~Cg~~   27 (34)
T cd00729           3 WVCPVCGYIHEGEEAPEKCPICGAP   27 (34)
T ss_pred             EECCCCCCEeECCcCCCcCcCCCCc
Confidence            579999954  3   3689999974

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center

Probab=83.33  E-value=0.66  Score=31.28  Aligned_cols=10  Identities=40%  Similarity=1.122  Sum_probs=7.0

Q ss_pred             ceecCCCCCc
Q psy2284         146 NYTCVPCGAR  155 (175)
Q Consensus       146 ~YtC~~Cg~r  155 (175)
                      .++||.||..
T Consensus        34 ~w~CP~C~a~   43 (50)
T cd00730          34 DWVCPVCGAG   43 (50)
T ss_pred             CCCCCCCCCc
Confidence            5678888763

Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.

>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []

Probab=83.25  E-value=0.62  Score=39.47  Aligned_cols=58  Identities=22%  Similarity=0.247  Sum_probs=40.0

Q ss_pred             HHHHHHHhhhccCCCCCcccc--ccCCCCCCCcccceecC--CCCceecCCCCCcccccccccc
Q psy2284         105 LAQMIEEDKALNSQGSAYENA--EAKPSKFPNRHFCAVCG--FPSNYTCVPCGARYCCVRCLGT  164 (175)
Q Consensus       105 f~~lleE~~~~~~~~p~Y~~a--~a~ps~~P~r~~C~VCG--~~~~YtC~~Cg~ryCS~~C~~~  164 (175)
                      ...+++|+..  +.-|.-.+.  ++.-+.-+.--+|.||-  .|-.-+||+||..-=++.|.-+
T Consensus       132 v~~Wf~EeEv--yGmpKi~~iika~tLsk~~hcilCtvCe~r~w~g~~CPKCGr~G~pi~CGmt  193 (200)
T PF12387_consen  132 VASWFGEEEV--YGMPKIITIIKAATLSKSKHCILCTVCEGREWKGGNCPKCGRHGKPITCGMT  193 (200)
T ss_pred             HHHHcccccc--cCcchhhhhhhHHhccCCCceEEEeeeecCccCCCCCCcccCCCCCeecccC
Confidence            3467888765  344433332  34556666677999998  8888999999998777777533

The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity

>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []

Probab=83.19  E-value=0.5  Score=31.51  Aligned_cols=12  Identities=42%  Similarity=1.162  Sum_probs=5.8

Q ss_pred             CCceecCCCCCc
Q psy2284         144 PSNYTCVPCGAR  155 (175)
Q Consensus       144 ~~~YtC~~Cg~r  155 (175)
                      +..|+||.||+.
T Consensus        32 p~~w~CP~C~a~   43 (47)
T PF00301_consen   32 PDDWVCPVCGAP   43 (47)
T ss_dssp             -TT-B-TTTSSB
T ss_pred             CCCCcCcCCCCc
Confidence            345677777753

The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional

Probab=82.81  E-value=0.54  Score=43.79  Aligned_cols=34  Identities=26%  Similarity=0.638  Sum_probs=29.5

Q ss_pred             CCcccceecCCCCceecCCCCCcccccccccccc
Q psy2284         133 PNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQ  166 (175)
Q Consensus       133 P~r~~C~VCG~~~~YtC~~Cg~ryCS~~C~~~H~  166 (175)
                      |.-..|-|||--|.|-|-.=....||++|...|-
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (518)
T PLN00206         26 PGEPKCVVCGRYGEYICDETDDDICSLECKQALL   59 (518)
T ss_pred             CCCceEEEecCccceeccCCCCccccHHHHHHHH
Confidence            3334599999999999999999999999998875

>PRK00420 hypothetical protein; Validated

Probab=81.04  E-value=0.94  Score=35.34  Aligned_cols=21  Identities=33%  Similarity=0.855  Sum_probs=16.6

Q ss_pred             ccceecCC------CCceecCCCCCcc
Q psy2284         136 HFCAVCGF------PSNYTCVPCGARY  156 (175)
Q Consensus       136 ~~C~VCG~------~~~YtC~~Cg~ry  156 (175)
                      .-|.+||+      .|.+-||.||..+
T Consensus        24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~   50 (112)
T PRK00420         24 KHCPVCGLPLFELKDGEVVCPVHGKVY   50 (112)
T ss_pred             CCCCCCCCcceecCCCceECCCCCCee
Confidence            56999993      4678899999854

>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase

Probab=80.90  E-value=0.86  Score=43.74  Aligned_cols=25  Identities=28%  Similarity=0.776  Sum_probs=20.8

Q ss_pred             CCCCcccceecCCCCce---ecCCCCCc
Q psy2284         131 KFPNRHFCAVCGFPSNY---TCVPCGAR  155 (175)
Q Consensus       131 ~~P~r~~C~VCG~~~~Y---tC~~Cg~r  155 (175)
                      ..|+...|..|||.+..   .||.||..
T Consensus       520 ~n~~~~~C~~CG~~g~~~~~~CP~Cgs~  547 (579)
T TIGR02487       520 INPPVDVCEDCGYTGEGLNDKCPKCGSH  547 (579)
T ss_pred             eccCCccCCCCCCCCCCCCCcCcCCCCc
Confidence            35778899999998865   79999965

This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=80.37  E-value=0.8  Score=26.57  Aligned_cols=20  Identities=40%  Similarity=1.047  Sum_probs=13.6

Q ss_pred             ccceecCC--CCcee-cCCCCCc
Q psy2284         136 HFCAVCGF--PSNYT-CVPCGAR  155 (175)
Q Consensus       136 ~~C~VCG~--~~~Yt-C~~Cg~r  155 (175)
                      .+|.-||.  ....+ |+.||.+
T Consensus         3 ~~Cp~Cg~~~~~~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGAEIDPDAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCCcCCcccccChhhCCC
Confidence            57888883  33444 8888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	1e-04

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 56

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 15/43 (34%)

Query: 125 AEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQD 167
           +        +   C +C     Y C  C   YC V C   H++
Sbjct: 2   SSGSSGLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKE 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	99.33
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	99.33
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	96.16
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	95.76
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	95.43
2yqp_A	60	Probable ATP-dependent RNA helicase DDX59; structu	95.37
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	95.22
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	95.21
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	89.62
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	89.18
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	88.26
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	86.94
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	86.71
4rxn_A	54	Rubredoxin; electron transfer(iron-sulfur protein)	86.03
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	85.58
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	84.54
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	83.88
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	83.8
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	81.02
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	80.33

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2e-13  Score=93.36  Aligned_cols=42  Identities=26%  Similarity=0.661  Sum_probs=37.3

Q ss_pred             CCCCcccceecCCCCceecCCCCCccccccccccccccccccc
Q psy2284         131 KFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKW  173 (175)
Q Consensus       131 ~~P~r~~C~VCG~~~~YtC~~Cg~ryCS~~C~~~H~etRC~K~  173 (175)
                      ......+|.||+.+++|+||+|+.+|||+.|++.|+++ |.+-
T Consensus         8 ~~~~~~~C~vC~~~~kY~CPrC~~~yCSl~C~k~Hk~~-C~~~   49 (56)
T 2yqq_A            8 LKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQ-CNPE   49 (56)
T ss_dssp             CCCCCCCCTTTCSCCSEECTTTCCEESSHHHHHHHHHH-CCCC
T ss_pred             cCCCCCccCcCcCCCeeeCCCCCCCeeCHHHHHHHHhh-CcCC
Confidence            34455699999999999999999999999999999998 9763

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=99.33  E-value=1.7e-13  Score=94.61  Aligned_cols=42  Identities=38%  Similarity=0.872  Sum_probs=37.8

Q ss_pred             CCCCCCCcccceecC----CCCceecCCCCCccccccccccccccccc
Q psy2284         128 KPSKFPNRHFCAVCG----FPSNYTCVPCGARYCCVRCLGTHQDTRCL  171 (175)
Q Consensus       128 ~ps~~P~r~~C~VCG----~~~~YtC~~Cg~ryCS~~C~~~H~etRC~  171 (175)
                      .++..+++.+|.||+    ++++|+||+|+++|||+.|++.|++  |.
T Consensus         4 ~~s~m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk~--Cs   49 (59)
T 1x4s_A            4 GSSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT--CA   49 (59)
T ss_dssp             CCSSCCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHHCC--GG
T ss_pred             CCCCCCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHHhH--hC
Confidence            567788899999998    6899999999999999999999984  65

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=96.16  E-value=0.0022  Score=42.71  Aligned_cols=37  Identities=27%  Similarity=0.588  Sum_probs=30.8

Q ss_pred             CCCCcccceecCCCCceecCCCCC-ccccccccccccc
Q psy2284         131 KFPNRHFCAVCGFPSNYTCVPCGA-RYCCVRCLGTHQD  167 (175)
Q Consensus       131 ~~P~r~~C~VCG~~~~YtC~~Cg~-ryCS~~C~~~H~e  167 (175)
                      ..+....|.+||.++...|.+|.. .|||..|...|..
T Consensus        11 ~~~~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~   48 (60)
T 2dj8_A           11 QEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE   48 (60)
T ss_dssp             CCCCSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHH
T ss_pred             CCCCCcccccCCCCCcccCCCCCCEeeeCHHHHHHHHH
Confidence            345567999999999999999965 7999999887654

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=95.76  E-value=0.0022  Score=42.95  Aligned_cols=34  Identities=29%  Similarity=0.670  Sum_probs=28.7

Q ss_pred             CcccceecCCCCceecCCCCC-ccccccccccccc
Q psy2284         134 NRHFCAVCGFPSNYTCVPCGA-RYCCVRCLGTHQD  167 (175)
Q Consensus       134 ~r~~C~VCG~~~~YtC~~Cg~-ryCS~~C~~~H~e  167 (175)
                      ....|.+||.++...|.+|.. .|||..|...|..
T Consensus        16 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~   50 (64)
T 2odd_A           16 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE   50 (64)
T ss_dssp             CSSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHH
T ss_pred             CCCcCccccCCCcccCCCCCChhhCCHHHHHHHHH
Confidence            456899999999999999954 7999999877653

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=95.43  E-value=0.0038  Score=41.62  Aligned_cols=34  Identities=32%  Similarity=0.687  Sum_probs=28.2

Q ss_pred             CcccceecCCCCceecCCCC-Cccccccccccccc
Q psy2284         134 NRHFCAVCGFPSNYTCVPCG-ARYCCVRCLGTHQD  167 (175)
Q Consensus       134 ~r~~C~VCG~~~~YtC~~Cg-~ryCS~~C~~~H~e  167 (175)
                      ....|.+||.++...|.+|. ..|||..|...|..
T Consensus        12 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~   46 (60)
T 2od1_A           12 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE   46 (60)
T ss_dssp             CSSCCTTTSSCCCEECTTTSCCEESSHHHHHHHHH
T ss_pred             CCCccccCCCcccccCCCCCCeeecCHHHHHHHHH
Confidence            34689999999999999996 57999999766543

>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.37  E-value=0.0045  Score=42.54  Aligned_cols=35  Identities=29%  Similarity=0.706  Sum_probs=30.0

Q ss_pred             CCCcccceecCCCCceecCCCCCcccccccccccc
Q psy2284         132 FPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQ  166 (175)
Q Consensus       132 ~P~r~~C~VCG~~~~YtC~~Cg~ryCS~~C~~~H~  166 (175)
                      .|.-.+|-|||..|.|-|-.=....||+.|-..|-
T Consensus        16 ~pgePvCvvCGryGeYICd~Td~DVCSlECK~~~l   50 (60)
T 2yqp_A           16 EPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHL   50 (60)
T ss_dssp             CTTSCCCSSSSSCCSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCceEEEecCccceeecCCCcchhhHHHHHHHH
Confidence            34455699999999999999999999999987664

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=95.22  E-value=0.0044  Score=39.65  Aligned_cols=33  Identities=24%  Similarity=0.635  Sum_probs=27.5

Q ss_pred             cccceecCCCCceecCCCCC-ccccccccccccc
Q psy2284         135 RHFCAVCGFPSNYTCVPCGA-RYCCVRCLGTHQD  167 (175)
Q Consensus       135 r~~C~VCG~~~~YtC~~Cg~-ryCS~~C~~~H~e  167 (175)
                      ...|.+||.++...|.+|.. .|||..|...|..
T Consensus         9 ~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~   42 (52)
T 2jw6_A            9 EQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWK   42 (52)
T ss_dssp             --CCSSSSSSCSEECTTTCSSEESSHHHHHHHTT
T ss_pred             CCcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHH
Confidence            45899999999999999965 7999999987665

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=95.21  E-value=0.0069  Score=41.89  Aligned_cols=36  Identities=33%  Similarity=0.820  Sum_probs=30.3

Q ss_pred             CCCcccceecCCCCceecCCCC-Cccccccccccccc
Q psy2284         132 FPNRHFCAVCGFPSNYTCVPCG-ARYCCVRCLGTHQD  167 (175)
Q Consensus       132 ~P~r~~C~VCG~~~~YtC~~Cg-~ryCS~~C~~~H~e  167 (175)
                      .+...+|.+||.++...|.+|. .+|||..|...|..
T Consensus        12 ~~~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~   48 (70)
T 2d8q_A           12 APERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWE   48 (70)
T ss_dssp             CCCCCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHH
T ss_pred             cCCCCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHH
Confidence            3445699999999999999996 46999999988765

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=89.62  E-value=0.19  Score=31.85  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=28.1

Q ss_pred             cccceecCC--------------CCceecCCCCCccccccccccccccc
Q psy2284         135 RHFCAVCGF--------------PSNYTCVPCGARYCCVRCLGTHQDTR  169 (175)
Q Consensus       135 r~~C~VCG~--------------~~~YtC~~Cg~ryCS~~C~~~H~etR  169 (175)
                      ...|.+||.              ...|.|..||..|-...-...|++||
T Consensus        14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~~~~~~tr   62 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDAR   62 (62)
T ss_dssp             EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTCSCCCCCC
T ss_pred             CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCccccccccCC
Confidence            367999995              35799999999988887777777776

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=89.18  E-value=0.26  Score=34.10  Aligned_cols=31  Identities=19%  Similarity=0.646  Sum_probs=23.5

Q ss_pred             CCCCCCCcccceecCC-CC--ceecCCCCCccccc
Q psy2284         128 KPSKFPNRHFCAVCGF-PS--NYTCVPCGARYCCV  159 (175)
Q Consensus       128 ~ps~~P~r~~C~VCG~-~~--~YtC~~Cg~ryCS~  159 (175)
                      |.+..+...-|+.|+. ++  .|.| +||.-||+.
T Consensus         8 ~~~~~~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~   41 (64)
T 1wg2_A            8 PSRPVRPNNRCFSCNKKVGVMGFKC-KCGSTFCGS   41 (64)
T ss_dssp             SSCCSCCSCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred             CCCCCCcCCcChhhCCcccccCeEe-ecCCEeccc
Confidence            4444555678999994 45  5899 999999985

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=88.26  E-value=0.12  Score=45.84  Aligned_cols=33  Identities=27%  Similarity=0.592  Sum_probs=27.0

Q ss_pred             CCcccceecCC--CCceecCCCCC-ccccccccccc
Q psy2284         133 PNRHFCAVCGF--PSNYTCVPCGA-RYCCVRCLGTH  165 (175)
Q Consensus       133 P~r~~C~VCG~--~~~YtC~~Cg~-ryCS~~C~~~H  165 (175)
                      .....|..|+.  .+.+.|.+|+. +|||..|...|
T Consensus        47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~   82 (433)
T 3qww_A           47 ERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKED   82 (433)
T ss_dssp             GTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHH
T ss_pred             ccCCcCCcccccCCCCCCCCCCcceeecChhhhhhh
Confidence            34578999994  56788999987 99999998654

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.94  E-value=0.34  Score=33.81  Aligned_cols=25  Identities=28%  Similarity=0.697  Sum_probs=20.4

Q ss_pred             CcccceecC-CCCc-----eecCCCCCccccc
Q psy2284         134 NRHFCAVCG-FPSN-----YTCVPCGARYCCV  159 (175)
Q Consensus       134 ~r~~C~VCG-~~~~-----YtC~~Cg~ryCS~  159 (175)
                      ...-|.+|+ .++-     |.| +||.-||+.
T Consensus        14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~   44 (67)
T 1x4w_A           14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCML   44 (67)
T ss_dssp             CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred             cCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence            345899999 6663     789 999999986

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=86.71  E-value=0.17  Score=44.35  Aligned_cols=32  Identities=22%  Similarity=0.686  Sum_probs=26.3

Q ss_pred             CcccceecCC--CCceecCCCCC-ccccccccccc
Q psy2284         134 NRHFCAVCGF--PSNYTCVPCGA-RYCCVRCLGTH  165 (175)
Q Consensus       134 ~r~~C~VCG~--~~~YtC~~Cg~-ryCS~~C~~~H  165 (175)
                      ....|..|+.  .+...|.+|+. +|||..|.+.|
T Consensus        46 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~   80 (429)
T 3qwp_A           46 RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKA   80 (429)
T ss_dssp             BTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHT
T ss_pred             CCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhh
Confidence            3457999994  56788999987 99999998754

>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...

Probab=86.03  E-value=0.31  Score=32.47  Aligned_cols=10  Identities=30%  Similarity=1.029  Sum_probs=7.7

Q ss_pred             ceecCCCCCc
Q psy2284         146 NYTCVPCGAR  155 (175)
Q Consensus       146 ~YtC~~Cg~r  155 (175)
                      .++||.||..
T Consensus        36 dw~CP~Cg~~   45 (54)
T 4rxn_A           36 DWVCPLCGVG   45 (54)
T ss_dssp             TCBCTTTCCB
T ss_pred             CCcCcCCCCc
Confidence            5689999874

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=85.58  E-value=0.55  Score=32.50  Aligned_cols=27  Identities=26%  Similarity=0.769  Sum_probs=21.2

Q ss_pred             CCCcccceecCC-CC--ceecCCCCCccccc
Q psy2284         132 FPNRHFCAVCGF-PS--NYTCVPCGARYCCV  159 (175)
Q Consensus       132 ~P~r~~C~VCG~-~~--~YtC~~Cg~ryCS~  159 (175)
                      .+...-|+.|+. ++  .|.| +||.-||+.
T Consensus        12 k~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~   41 (64)
T 1wfh_A           12 PQRPNRCTVCRKRVGLTGFMC-RCGTTFCGS   41 (64)
T ss_dssp             CSSCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred             CCcCCcChhhCCccCccCEEe-ecCCEeccc
Confidence            444567999994 45  5899 899999986

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=84.54  E-value=0.64  Score=33.01  Aligned_cols=27  Identities=22%  Similarity=0.738  Sum_probs=21.4

Q ss_pred             CCCcccceecC-CCC--ceecCCCCCccccc
Q psy2284         132 FPNRHFCAVCG-FPS--NYTCVPCGARYCCV  159 (175)
Q Consensus       132 ~P~r~~C~VCG-~~~--~YtC~~Cg~ryCS~  159 (175)
                      .....-|..|+ .++  .|.| +||.-||+.
T Consensus        22 k~~~~RC~~C~kkvgL~~f~C-rCg~~FCs~   51 (74)
T 1wfp_A           22 KSTATRCLSCNKKVGVTGFKC-RCGSTFCGT   51 (74)
T ss_dssp             TCCCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred             cccCccchhhcCcccccceEe-ccCCEeccc
Confidence            45556899998 434  6999 899999986

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=83.88  E-value=0.26  Score=44.30  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=26.5

Q ss_pred             CCcccceecC--CCCceecCCCCC-ccccccccccc
Q psy2284         133 PNRHFCAVCG--FPSNYTCVPCGA-RYCCVRCLGTH  165 (175)
Q Consensus       133 P~r~~C~VCG--~~~~YtC~~Cg~-ryCS~~C~~~H  165 (175)
                      ....+|..|+  ..+...|.+|+. .|||..|...|
T Consensus        47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~   82 (490)
T 3n71_A           47 LINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDA   82 (490)
T ss_dssp             GTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHH
T ss_pred             ccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhh
Confidence            3467999997  456788999987 69999998654

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=83.80  E-value=0.36  Score=31.16  Aligned_cols=21  Identities=33%  Similarity=1.108  Sum_probs=15.3

Q ss_pred             cccceecCC--C-------------CceecCCCCCc
Q psy2284         135 RHFCAVCGF--P-------------SNYTCVPCGAR  155 (175)
Q Consensus       135 r~~C~VCG~--~-------------~~YtC~~Cg~r  155 (175)
                      ...|.||||  .             ..+.||.||..
T Consensus         4 ~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~   39 (46)
T 6rxn_A            4 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS   39 (46)
T ss_dssp             CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred             EEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence            457999994  2             14689999874

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=81.02  E-value=1.1  Score=29.06  Aligned_cols=36  Identities=19%  Similarity=0.460  Sum_probs=24.2

Q ss_pred             CCccccccCCCCCCCcccceecCC-------CCceecCCCCCcc
Q psy2284         120 SAYENAEAKPSKFPNRHFCAVCGF-------PSNYTCVPCGARY  156 (175)
Q Consensus       120 p~Y~~a~a~ps~~P~r~~C~VCG~-------~~~YtC~~Cg~ry  156 (175)
                      ..|.... ..-....++||..||.       ...+.|++||.-|
T Consensus         5 l~~y~v~-~~kv~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~   47 (50)
T 3j20_Y            5 WKLYEIK-DGKVIRKNKFCPRCGPGVFMADHGDRWACGKCGYTE   47 (50)
T ss_dssp             CCCCEEC-SSCEECSSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred             eeEEEEE-CCEEEEecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence            3455554 2334578999999995       2377899998643

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=80.33  E-value=0.75  Score=30.16  Aligned_cols=9  Identities=44%  Similarity=1.305  Sum_probs=6.3

Q ss_pred             ceecCCCCC
Q psy2284         146 NYTCVPCGA  154 (175)
Q Consensus       146 ~YtC~~Cg~  154 (175)
                      .+.||-||.
T Consensus        36 dw~CP~Cg~   44 (52)
T 1e8j_A           36 DWACPVCGA   44 (52)
T ss_dssp             TCCCSSSCC
T ss_pred             CCcCCCCCC
Confidence            347888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1x4sa1	46	g.85.1.2 (A:8-53) Zinc finger HIT domain containin	4e-04

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 4e-04
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 136 HFCAVCGF-PSNYTCVPCGARYCCVRCLGTHQD 167
            FC      P+ YTC  C A YC +RC  TH  
Sbjct: 8   GFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	98.97
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	97.48
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	96.92
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	96.77
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	89.92
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	84.94
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	84.42
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	84.3
d1dx8a_	70	Rubredoxin {Guillardia theta [TaxId: 55529]}	84.21
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	83.64
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	81.84

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.3e-11  Score=78.65  Aligned_cols=35  Identities=43%  Similarity=1.037  Sum_probs=31.7

Q ss_pred             ccceecC-CCCceecCCCCCcccccccccccccccccc
Q psy2284         136 HFCAVCG-FPSNYTCVPCGARYCCVRCLGTHQDTRCLK  172 (175)
Q Consensus       136 ~~C~VCG-~~~~YtC~~Cg~ryCS~~C~~~H~etRC~K  172 (175)
                      .+|.||+ ..++|+||+|+.+|||+.|++.|++  |..
T Consensus         8 ~lC~vC~~~~~KY~CP~C~~~yCSL~CyK~Hk~--Cse   43 (46)
T d1x4sa1           8 GFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT--CAE   43 (46)
T ss_dssp             CSSCTTCCEEECEECTTTCCEESSHHHHHHHCC--GGG
T ss_pred             ccChhhhCccccccCCCCCCceechHHHhhhhh--ccc
Confidence            4899999 8889999999999999999999986  653

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.7e-05  Score=50.20  Aligned_cols=37  Identities=32%  Similarity=0.783  Sum_probs=31.5

Q ss_pred             CCCCcccceecCCCCceecCCCC-Cccccccccccccc
Q psy2284         131 KFPNRHFCAVCGFPSNYTCVPCG-ARYCCVRCLGTHQD  167 (175)
Q Consensus       131 ~~P~r~~C~VCG~~~~YtC~~Cg-~ryCS~~C~~~H~e  167 (175)
                      ..|.+..|..||..+..+|.+|+ .+|||..|+..|..
T Consensus         4 ~~p~~~~C~~Cg~~~~~~Cs~C~~~~YCs~~CQ~~dW~   41 (47)
T d2dana1           4 VAPERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWE   41 (47)
T ss_dssp             CCCCCCCCSSSCCCCCEECTTTSCSEESSHHHHHHTHH
T ss_pred             cCCCCCcCcCCCChhhccCCCCCCEeeCCHHHHHHHHH
Confidence            34555679999999999999997 79999999998865

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00012  Score=46.10  Aligned_cols=34  Identities=32%  Similarity=0.673  Sum_probs=29.5

Q ss_pred             CcccceecCCCCceecCCC-CCccccccccccccc
Q psy2284         134 NRHFCAVCGFPSNYTCVPC-GARYCCVRCLGTHQD  167 (175)
Q Consensus       134 ~r~~C~VCG~~~~YtC~~C-g~ryCS~~C~~~H~e  167 (175)
                      ....|.+||.++...|.+| +..|||..|+..|..
T Consensus         7 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~dW~   41 (47)
T d2dj8a1           7 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE   41 (47)
T ss_dssp             CSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHH
T ss_pred             CCCcCCCCCccccccCCCCCCeeeCCHHHHHHHHH
Confidence            4568999999999999999 689999999987753

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00014  Score=43.92  Aligned_cols=30  Identities=27%  Similarity=0.717  Sum_probs=27.0

Q ss_pred             ceecCCCCceecCCCC-Cccccccccccccc
Q psy2284         138 CAVCGFPSNYTCVPCG-ARYCCVRCLGTHQD  167 (175)
Q Consensus       138 C~VCG~~~~YtC~~Cg-~ryCS~~C~~~H~e  167 (175)
                      |.+||..+...|.+|. ..|||..|+..|..
T Consensus         2 C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~   32 (38)
T d2jw6a1           2 CVNCGREAMSECTGCHKVNYCSTFCQRKDWK   32 (38)
T ss_dssp             CSSSSSSCSEECTTTCSSEESSHHHHHHHTT
T ss_pred             ccccCccccccCCCCCCEeeCCHHHHHHHHH
Confidence            8999999999999997 59999999998864

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.92  E-value=0.11  Score=35.24  Aligned_cols=31  Identities=23%  Similarity=0.717  Sum_probs=23.5

Q ss_pred             CCCCCCCcccceecC-CCC--ceecCCCCCccccc
Q psy2284         128 KPSKFPNRHFCAVCG-FPS--NYTCVPCGARYCCV  159 (175)
Q Consensus       128 ~ps~~P~r~~C~VCG-~~~--~YtC~~Cg~ryCS~  159 (175)
                      +....+...-|.+|+ ..+  .|+| +||..||+.
T Consensus        18 ~~~~k~k~~RC~~C~KKl~l~~~~C-rCg~~FC~~   51 (74)
T d1wfla_          18 PELPKPKKNRCFMCRKKVGLTGFDC-RCGNLFCGL   51 (74)
T ss_dssp             CCCCCSCTTBCSSSCCBCGGGCEEC-TTSCEECSS
T ss_pred             ccCCCCCCCcChhhCCcccceeeEc-cCCCEehhh
Confidence            333456677999999 333  6999 799999986

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.94  E-value=0.29  Score=32.28  Aligned_cols=30  Identities=30%  Similarity=0.802  Sum_probs=22.4

Q ss_pred             CCCCCCcccceecC-C--CCceecCCCCCccccc
Q psy2284         129 PSKFPNRHFCAVCG-F--PSNYTCVPCGARYCCV  159 (175)
Q Consensus       129 ps~~P~r~~C~VCG-~--~~~YtC~~Cg~ryCS~  159 (175)
                      |+......-|.+|+ .  .-.|+| +||..||+.
T Consensus         9 ~~~~~k~~RC~~C~KKl~l~~~~C-rCg~~FC~~   41 (64)
T d1wfha_           9 PSPPQRPNRCTVCRKRVGLTGFMC-RCGTTFCGS   41 (64)
T ss_dssp             CCCCSSCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred             CCCCCCCCcChhhCCCccceeeec-cCCCEehhh
Confidence            34445566899999 3  336999 699999986

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.42  E-value=0.16  Score=32.23  Aligned_cols=12  Identities=42%  Similarity=1.140  Sum_probs=8.6

Q ss_pred             CCceecCCCCCc
Q psy2284         144 PSNYTCVPCGAR  155 (175)
Q Consensus       144 ~~~YtC~~Cg~r  155 (175)
                      +..++||.||..
T Consensus        33 P~dw~CP~C~a~   44 (53)
T d1brfa_          33 PDDWVCPICGAP   44 (53)
T ss_dssp             CTTCBCTTTCCB
T ss_pred             CCCCCCcCCCCc
Confidence            467788888763

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.30  E-value=0.15  Score=32.33  Aligned_cols=12  Identities=33%  Similarity=1.082  Sum_probs=8.7

Q ss_pred             CCceecCCCCCc
Q psy2284         144 PSNYTCVPCGAR  155 (175)
Q Consensus       144 ~~~YtC~~Cg~r  155 (175)
                      +..++||.||..
T Consensus        34 P~dw~CP~C~a~   45 (53)
T d1iroa_          34 PDDWVCPLCGVG   45 (53)
T ss_dssp             CTTCBCTTTCCB
T ss_pred             CCCCCCcCCCCc
Confidence            466788888764

>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Guillardia theta [TaxId: 55529]

Probab=84.21  E-value=0.19  Score=33.57  Aligned_cols=22  Identities=23%  Similarity=0.890  Sum_probs=17.2

Q ss_pred             CcccceecCC----------------------CCceecCCCCCc
Q psy2284         134 NRHFCAVCGF----------------------PSNYTCVPCGAR  155 (175)
Q Consensus       134 ~r~~C~VCG~----------------------~~~YtC~~Cg~r  155 (175)
                      .+..|.+|||                      +..+.||.||..
T Consensus         6 ~ky~C~~CgyiYDp~~GD~~~gI~pGT~F~dLP~dW~CP~Cga~   49 (70)
T d1dx8a_           6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP   49 (70)
T ss_dssp             SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred             CeEEcCCCCeEECcccCCcccCCCCCCChHHCCCCCCCcCCCCc
Confidence            4678888885                      677889999874

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=0.22  Score=32.39  Aligned_cols=40  Identities=30%  Similarity=0.816  Sum_probs=28.7

Q ss_pred             CCcccceecCCC-------CceecCCCCCcccccccccc----ccccccccc
Q psy2284         133 PNRHFCAVCGFP-------SNYTCVPCGARYCCVRCLGT----HQDTRCLKW  173 (175)
Q Consensus       133 P~r~~C~VCG~~-------~~YtC~~Cg~ryCS~~C~~~----H~etRC~K~  173 (175)
                      |.-+.|.-||+.       ...+|+.||..||.. |...    |..-.|..|
T Consensus        16 ~~~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~-C~~~w~~~H~~~tC~~~   66 (73)
T d2ct7a1          16 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVR-CKRQWEEQHRGRSCEDF   66 (73)
T ss_dssp             CCEECCSSSCCCEECCCSCSCEECTTTCCEECSS-SCSBCCTTTTTSCHHHH
T ss_pred             CCCCCCCCCCCEeEECCCCCEEEcCCCCCeECcc-cCcchhcCCCCCCHHHH
Confidence            445667677742       256899999999987 8875    887777543

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.84  E-value=0.54  Score=32.42  Aligned_cols=23  Identities=30%  Similarity=1.122  Sum_probs=18.4

Q ss_pred             ccceecC-CCC---ceecCCCCCccccc
Q psy2284         136 HFCAVCG-FPS---NYTCVPCGARYCCV  159 (175)
Q Consensus       136 ~~C~VCG-~~~---~YtC~~Cg~ryCS~  159 (175)
                      ..|.+|+ ..+   .|+| +||..||+.
T Consensus        26 ~RC~~C~KKl~l~~~~~C-rCg~~FC~~   52 (85)
T d1wffa_          26 KHCFLCGKKTGLATSFEC-RCGNNFCAS   52 (85)
T ss_dssp             CBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred             CcChhcCCeecCCcCeec-CCCCEehhh
Confidence            4699999 332   5999 699999986