Conserved Domains and Related Protein Families
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
85
KOG2035|consensus 351
100.0 KOG0991|consensus 333
99.61 KOG0990|consensus 360
99.42 KOG0989|consensus 346
99.37 PRK04132 846
replication factor C small subunit; Provisional
99.11 COG0470 325
HolB ATPase involved in DNA replication [DNA repli
99.01 PLN03025 319
replication factor C subunit; Provisional
99.0 PF13177 162
DNA_pol3_delta2: DNA polymerase III, delta subunit
98.06 PRK00440 319
rfc replication factor C small subunit; Reviewed
97.76 PRK04195 482
replication factor C large subunit; Provisional
97.75 PRK14964 491
DNA polymerase III subunits gamma and tau; Provisi
97.71 PRK14958 509
DNA polymerase III subunits gamma and tau; Provisi
97.68 PRK14956 484
DNA polymerase III subunits gamma and tau; Provisi
97.66 PRK08451 535
DNA polymerase III subunits gamma and tau; Validat
97.65 PRK08769 319
DNA polymerase III subunit delta'; Validated
97.6 PRK06871 325
DNA polymerase III subunit delta'; Validated
97.56 PRK12323 700
DNA polymerase III subunits gamma and tau; Provisi
97.52 PRK07003 830
DNA polymerase III subunits gamma and tau; Validat
97.5 PRK14951 618
DNA polymerase III subunits gamma and tau; Provisi
97.49 PRK14963 504
DNA polymerase III subunits gamma and tau; Provisi
97.43 PHA02544 316
44 clamp loader, small subunit; Provisional
97.41 PRK07994 647
DNA polymerase III subunits gamma and tau; Validat
97.39 PRK07764 824
DNA polymerase III subunits gamma and tau; Validat
97.37 PRK05707 328
DNA polymerase III subunit delta'; Validated
97.37 PRK14952 584
DNA polymerase III subunits gamma and tau; Provisi
97.35 PRK12402 337
replication factor C small subunit 2; Reviewed
97.33 PRK14949 944
DNA polymerase III subunits gamma and tau; Provisi
97.33 PRK14965 576
DNA polymerase III subunits gamma and tau; Provisi
97.21 PRK14971 614
DNA polymerase III subunits gamma and tau; Provisi
97.21 PRK14969 527
DNA polymerase III subunits gamma and tau; Provisi
97.17 PRK05563 559
DNA polymerase III subunits gamma and tau; Validat
97.16 PRK14948 620
DNA polymerase III subunits gamma and tau; Provisi
97.16 PRK09111 598
DNA polymerase III subunits gamma and tau; Validat
97.15 PRK07993 334
DNA polymerase III subunit delta'; Validated
97.14 PRK06645 507
DNA polymerase III subunits gamma and tau; Validat
97.13 PRK05917 290
DNA polymerase III subunit delta'; Validated
97.08 PRK14960 702
DNA polymerase III subunits gamma and tau; Provisi
97.07 PRK07276 290
DNA polymerase III subunit delta'; Validated
97.06 PRK14953 486
DNA polymerase III subunits gamma and tau; Provisi
97.03 PRK05564 313
DNA polymerase III subunit delta'; Validated
97.03 PRK09112 351
DNA polymerase III subunit delta'; Validated
97.02 PRK05896 605
DNA polymerase III subunits gamma and tau; Validat
96.95 PRK14962 472
DNA polymerase III subunits gamma and tau; Provisi
96.87 TIGR00678 188
holB DNA polymerase III, delta' subunit. At positi
96.85 PRK14950 585
DNA polymerase III subunits gamma and tau; Provisi
96.84 PRK07133 725
DNA polymerase III subunits gamma and tau; Validat
96.8 PRK14959 624
DNA polymerase III subunits gamma and tau; Provisi
96.77 PRK06090 319
DNA polymerase III subunit delta'; Validated
96.74 PRK07471 365
DNA polymerase III subunit delta'; Validated
96.71 PRK14961 363
DNA polymerase III subunits gamma and tau; Provisi
96.68 PRK08691 709
DNA polymerase III subunits gamma and tau; Validat
96.68 PRK08058 329
DNA polymerase III subunit delta'; Validated
96.62 TIGR02397 355
dnaX_nterm DNA polymerase III, subunit gamma and t
96.58 PRK14957 546
DNA polymerase III subunits gamma and tau; Provisi
96.51 PRK06964 342
DNA polymerase III subunit delta'; Validated
96.43 PRK14955 397
DNA polymerase III subunits gamma and tau; Provisi
96.36 PRK07399 314
DNA polymerase III subunit delta'; Validated
96.24 PRK06305 451
DNA polymerase III subunits gamma and tau; Validat
96.16 PRK07940 394
DNA polymerase III subunit delta'; Validated
96.07 COG2812 515
DnaX DNA polymerase III, gamma/tau subunits [DNA r
96.01 PRK06581 263
DNA polymerase III subunit delta'; Validated
95.98 PRK14970 367
DNA polymerase III subunits gamma and tau; Provisi
95.79 PRK14954 620
DNA polymerase III subunits gamma and tau; Provisi
95.76 PRK07132 299
DNA polymerase III subunit delta'; Validated
95.4 PRK08699 325
DNA polymerase III subunit delta'; Validated
95.38 PRK06647 563
DNA polymerase III subunits gamma and tau; Validat
95.35 PRK05818 261
DNA polymerase III subunit delta'; Validated
94.96 PRK13342 413
recombination factor protein RarA; Reviewed
94.96 PRK13341 725
recombination factor protein RarA/unknown domain f
94.51 KOG1969|consensus 877
94.25 PF06733 174
DEAD_2: DEAD_2; InterPro: IPR010614 This represent
89.93 TIGR02928 365
orc1/cdc6 family replication initiation protein. M
88.45 smart00488 289
DEXDc2 DEAD-like helicases superfamily.
86.16 smart00489 289
DEXDc3 DEAD-like helicases superfamily.
86.16 cd00046 144
DEXDc DEAD-like helicases superfamily. A diverse f
85.67 COG1474 366
CDC6 Cdc6-related protein, AAA superfamily ATPase
85.3 PRK11747 697
dinG ATP-dependent DNA helicase DinG; Provisional
81.18 smart00487 201
DEXDc DEAD-like helicases superfamily.
81.16 TIGR02902 531
spore_lonB ATP-dependent protease LonB. Members of
80.87 TIGR01407 850
dinG_rel DnaQ family exonuclease/DinG family helic
80.49 smart00382 148
AAA ATPases associated with a variety of cellular
80.34 PRK08485 206
DNA polymerase III subunit delta'; Validated
80.17 TIGR03117 636
cas_csf4 CRISPR-associated DEAD/DEAH-box helicase
80.16 PRK08074 928
bifunctional ATP-dependent DNA helicase/DNA polyme
80.16
>KOG2035|consensus
Back Hide alignment and domain information
Probab=100.00 E-value=7.8e-34 Score=221.07 Aligned_cols=81 Identities=46% Similarity=0.681 Sum_probs=78.5
Q ss_pred CccceeeCCCCCeEEEEEccccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 1 MESDIKNTPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 1 ~e~~~~~t~s~k~~eI~~~~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+|+++|.||++||+||++++||||+|+||||+|++||+|||++||++||++|++..++++||||||+|||.||.|||+|.
T Consensus 68 i~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aL 147 (351)
T KOG2035|consen 68 IETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHAL 147 (351)
T ss_pred eeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred c
Q psy2304 81 S 81 (85)
Q Consensus 81 ~ 81 (85)
.
T Consensus 148 R 148 (351)
T KOG2035|consen 148 R 148 (351)
T ss_pred H
Confidence 3
>KOG0991|consensus
Back Show alignment and domain information
Probab=99.61 E-value=1.6e-16 Score=123.04 Aligned_cols=70 Identities=21% Similarity=0.129 Sum_probs=60.0
Q ss_pred CCCCCeEEEEEc--------cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 8 TPSKKKIDIMTT--------ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 8 t~s~k~~eI~~~--------~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
.+.|||..|..+ +..-.||||+||++++ .|||..||.|||.+...+.+ .+|+|||||||+||..||+|
T Consensus 57 PG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI--DvVRn~IK~FAQ~kv~lp~g--rhKIiILDEADSMT~gAQQA 132 (333)
T KOG0991|consen 57 PGTGKTTSILCLARELLGDSYKEAVLELNASDERGI--DVVRNKIKMFAQKKVTLPPG--RHKIIILDEADSMTAGAQQA 132 (333)
T ss_pred CCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc--HHHHHHHHHHHHhhccCCCC--ceeEEEeeccchhhhHHHHH
Confidence 356888777666 5677899999999765 89999999999999876544 69999999999999999999
Q ss_pred cc
Q psy2304 80 SS 81 (85)
Q Consensus 80 ~~ 81 (85)
..
T Consensus 133 lR 134 (333)
T KOG0991|consen 133 LR 134 (333)
T ss_pred HH
Confidence 64
>KOG0990|consensus
Back Show alignment and domain information
Probab=99.42 E-value=3.2e-14 Score=112.43 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCCCCeEEEEEc---------cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCC-CCceeEEEEcCCCCCCHHHH
Q psy2304 8 TPSKKKIDIMTT---------ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNG-QRDFKGKFVARGPLVGNPWH 77 (85)
Q Consensus 8 t~s~k~~eI~~~---------~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~-~~~fKvvvLdEAD~LT~~AQ 77 (85)
.++||+..|..+ .+++.+|||+||.+ |+.+||+.||.||++++....+ ...||+|||||||+||.+||
T Consensus 71 PGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r--gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ 148 (360)
T KOG0990|consen 71 PGTGKTSTILANARDFYSPHPTTSMLLELNASDDR--GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ 148 (360)
T ss_pred CCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc--CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH
Confidence 355788777655 46889999999995 5599999999999998652221 23799999999999999999
Q ss_pred hccc
Q psy2304 78 RASS 81 (85)
Q Consensus 78 ~a~~ 81 (85)
.|..
T Consensus 149 nALR 152 (360)
T KOG0990|consen 149 NALR 152 (360)
T ss_pred HHHH
Confidence 9964
>KOG0989|consensus
Back Show alignment and domain information
Probab=99.37 E-value=4.2e-14 Score=111.32 Aligned_cols=72 Identities=22% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCCCCeEEEEEcccc---------ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCC----CCCCceeEEEEcCCCCCCH
Q psy2304 8 TPSKKKIDIMTTASN---------YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDP----NGQRDFKGKFVARGPLVGN 74 (85)
Q Consensus 8 t~s~k~~eI~~~~Sn---------~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~----~~~~~fKvvvLdEAD~LT~ 74 (85)
.++|||+.+.+.+.. ..+|+|+||++++ .|+|+.||.||+...... ...++||||||||||.||.
T Consensus 66 pGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi--svvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts 143 (346)
T KOG0989|consen 66 PGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI--SVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS 143 (346)
T ss_pred CCCcHhHHHHHHHHHhcCccccccchhhhcccccccc--cchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH
Confidence 467888887776433 3589999999655 899999999999876642 3567999999999999999
Q ss_pred HHHhccc
Q psy2304 75 PWHRASS 81 (85)
Q Consensus 75 ~AQ~a~~ 81 (85)
+||.|.+
T Consensus 144 daq~aLr 150 (346)
T KOG0989|consen 144 DAQAALR 150 (346)
T ss_pred HHHHHHH
Confidence 9999964
>PRK04132 replication factor C small subunit; Provisional
Back Show alignment and domain information
Probab=99.11 E-value=1.9e-11 Score=104.88 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=52.7
Q ss_pred CCeEEEEEccc--------cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 11 KKKIDIMTTAS--------NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 11 ~k~~eI~~~~S--------n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
|||.-+.+++. ..|+||||||.++. .+||++||++|++++++. .+||||||||||.||.+||.|.
T Consensus 578 GKTT~A~ala~~l~g~~~~~~~lElNASd~rgi--d~IR~iIk~~a~~~~~~~---~~~KVvIIDEaD~Lt~~AQnAL 650 (846)
T PRK04132 578 HNTTAALALARELFGENWRHNFLELNASDERGI--NVIREKVKEFARTKPIGG---ASFKIIFLDEADALTQDAQQAL 650 (846)
T ss_pred cHHHHHHHHHHhhhcccccCeEEEEeCCCcccH--HHHHHHHHHHHhcCCcCC---CCCEEEEEECcccCCHHHHHHH
Confidence 56655555543 34999999998554 799999999999988742 3699999999999999999985
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=99.01 E-value=3.1e-10 Score=82.95 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=49.1
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....++||||||.+..| ++.+.||++++..+..+. ..++|||||||||.||.+||.|.
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~-~~~~kviiidead~mt~~A~nal 129 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPL-EGGYKVVIIDEADKLTEDAANAL 129 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCC-CCCceEEEeCcHHHHhHHHHHHH
Confidence 34678999999997764 999999999998877542 23799999999999999999985
>PLN03025 replication factor C subunit; Provisional
Back Show alignment and domain information
Probab=99.00 E-value=1e-10 Score=88.31 Aligned_cols=69 Identities=20% Similarity=0.107 Sum_probs=52.8
Q ss_pred CCCCCeEEEEEc--------cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 8 TPSKKKIDIMTT--------ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 8 t~s~k~~eI~~~--------~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
.++|||.-+..+ .+..++|+|+||.++. .++|++||.+|+....... ..+|+|||||||.||.+||.|
T Consensus 43 ~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~--~~vr~~i~~~~~~~~~~~~--~~~kviiiDE~d~lt~~aq~a 118 (319)
T PLN03025 43 PGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI--DVVRNKIKMFAQKKVTLPP--GRHKIVILDEADSMTSGAQQA 118 (319)
T ss_pred CCCCHHHHHHHHHHHHhcccCccceeeecccccccH--HHHHHHHHHHHhccccCCC--CCeEEEEEechhhcCHHHHHH
Confidence 456777544433 2456999999998654 6999999999997643221 269999999999999999988
Q ss_pred c
Q psy2304 80 S 80 (85)
Q Consensus 80 ~ 80 (85)
.
T Consensus 119 L 119 (319)
T PLN03025 119 L 119 (319)
T ss_pred H
Confidence 5
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A
Back Show alignment and domain information
Probab=98.06 E-value=5.2e-06 Score=57.90 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=39.4
Q ss_pred cccceeEeCCCCC-CcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDA-GIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~-g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....+.+++|.+. ......-||++++.+..+ +.. .++||+||||||.||.+||.|.
T Consensus 66 ~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~-~~~----~~~KviiI~~ad~l~~~a~NaL 122 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS-PSE----GKYKVIIIDEADKLTEEAQNAL 122 (162)
T ss_dssp -CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS--TT----SSSEEEEEETGGGS-HHHHHHH
T ss_pred cCcceEEEecccccchhhHHHHHHHHHHHHHH-Hhc----CCceEEEeehHhhhhHHHHHHH
Confidence 4566788888775 244567778666666444 322 2699999999999999999985
>PRK00440 rfc replication factor C small subunit; Reviewed
Back Show alignment and domain information
Probab=97.76 E-value=6.2e-05 Score=55.18 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=43.4
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
..++|+|++|.+.. ..+++.|++++++.+... .+.|+|+|||+|.|+.++|.+
T Consensus 69 ~~~i~~~~~~~~~~--~~~~~~i~~~~~~~~~~~---~~~~vviiDe~~~l~~~~~~~ 121 (319)
T PRK00440 69 ENFLELNASDERGI--DVIRNKIKEFARTAPVGG---APFKIIFLDEADNLTSDAQQA 121 (319)
T ss_pred cceEEeccccccch--HHHHHHHHHHHhcCCCCC---CCceEEEEeCcccCCHHHHHH
Confidence 46899999987544 678999999999876532 258999999999999988865
>PRK04195 replication factor C large subunit; Provisional
Back Show alignment and domain information
Probab=97.75 E-value=9.1e-06 Score=65.02 Aligned_cols=62 Identities=16% Similarity=-0.015 Sum_probs=48.0
Q ss_pred CCCCCeEEEEEccc---cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCH
Q psy2304 8 TPSKKKIDIMTTAS---NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGN 74 (85)
Q Consensus 8 t~s~k~~eI~~~~S---n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~ 74 (85)
.++|||.-+..+.. -.++|+|+||.+.. .+++..+.+.+.+.++.. .+.|+|||||||.|+.
T Consensus 48 pG~GKTtla~ala~el~~~~ielnasd~r~~--~~i~~~i~~~~~~~sl~~---~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 48 PGVGKTSLAHALANDYGWEVIELNASDQRTA--DVIERVAGEAATSGSLFG---ARRKLILLDEVDGIHG 112 (482)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcccccccH--HHHHHHHHHhhccCcccC---CCCeEEEEecCccccc
Confidence 46677765555533 24899999998654 789999999998877752 2589999999999987
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.71 E-value=4.8e-05 Score=62.43 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=41.4
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+..++|+||++.. ...-||+++.. +++.|..+ .|||+||||+|.||.+||.|.
T Consensus 83 ~~~Dv~eidaas~~--~vddIR~Iie~-~~~~P~~~----~~KVvIIDEah~Ls~~A~NaL 136 (491)
T PRK14964 83 NHPDVIEIDAASNT--SVDDIKVILEN-SCYLPISS----KFKVYIIDEVHMLSNSAFNAL 136 (491)
T ss_pred CCCCEEEEecccCC--CHHHHHHHHHH-HHhccccC----CceEEEEeChHhCCHHHHHHH
Confidence 45667999998653 34678887765 45556532 699999999999999999875
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.68 E-value=5.2e-05 Score=62.01 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=38.2
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|++|++. +...-+|++++.+... +.. .+|||+||||||.||.+||.|.
T Consensus 90 ~~eidaas~--~~v~~iR~l~~~~~~~-p~~----~~~kV~iIDE~~~ls~~a~naL 139 (509)
T PRK14958 90 LFEVDAASR--TKVEDTRELLDNIPYA-PTK----GRFKVYLIDEVHMLSGHSFNAL 139 (509)
T ss_pred EEEEccccc--CCHHHHHHHHHHHhhc-ccc----CCcEEEEEEChHhcCHHHHHHH
Confidence 799998754 3346689988876554 321 2699999999999999999874
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.66 E-value=4.6e-05 Score=62.70 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=39.9
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+..++|+||.+.. +...||++++.+... +.. ..|||+||||||.|+.+||.|.
T Consensus 88 ~~~dviEIdaas~~--gVd~IReL~e~l~~~-p~~----g~~KV~IIDEah~Ls~~A~NAL 141 (484)
T PRK14956 88 ISSDVLEIDAASNR--GIENIRELRDNVKFA-PMG----GKYKVYIIDEVHMLTDQSFNAL 141 (484)
T ss_pred CCccceeechhhcc--cHHHHHHHHHHHHhh-hhc----CCCEEEEEechhhcCHHHHHHH
Confidence 34568999996542 236788888776543 221 2699999999999999999985
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=97.65 E-value=8.5e-05 Score=61.60 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=38.7
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-.+|+|+++.+ ++..||++++.....+.. .++||+||||||.|+.+||.|.
T Consensus 87 dv~eldaas~~--gId~IRelie~~~~~P~~-----~~~KVvIIDEad~Lt~~A~NAL 137 (535)
T PRK08451 87 DIIEMDAASNR--GIDDIRELIEQTKYKPSM-----ARFKIFIIDEVHMLTKEAFNAL 137 (535)
T ss_pred eEEEecccccc--CHHHHHHHHHHHhhCccc-----CCeEEEEEECcccCCHHHHHHH
Confidence 35788887653 457899999876543221 1699999999999999999885
>PRK08769 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=97.60 E-value=7.4e-05 Score=58.11 Aligned_cols=51 Identities=22% Similarity=0.122 Sum_probs=33.6
Q ss_pred eEeCCCCCCcc-----cchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 25 IEVNPNDAGIY-----DRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 25 lElnpSD~g~~-----Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+|..|++.|.. .+.-||++++.+..++.. + ++||+|||+||.|+..|++|.
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~---g--~~kV~iI~~ae~m~~~AaNaL 133 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQY---G--IAQVVIVDPADAINRAACNAL 133 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCccc---C--CcEEEEeccHhhhCHHHHHHH
Confidence 34478766532 233455555544444332 1 699999999999999999984
>PRK06871 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=97.56 E-value=0.00012 Score=57.08 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=40.1
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+.|.+...+...-||++++.+..++.-+ ++||+|||+||.||..||.|.
T Consensus 76 ~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g-----~~KV~iI~~a~~m~~~AaNaL 127 (325)
T PRK06871 76 FHILEPIDNKDIGVDQVREINEKVSQHAQQG-----GNKVVYIQGAERLTEAAANAL 127 (325)
T ss_pred EEEEccccCCCCCHHHHHHHHHHHhhccccC-----CceEEEEechhhhCHHHHHHH
Confidence 3456675443456688999988887775532 699999999999999999984
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.52 E-value=0.0001 Score=63.15 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=39.3
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|||+++. ++..-||++++.+...... ..|||+||||+|.||..+|+|.
T Consensus 94 DviEIdAas~--~gVDdIReLie~~~~~P~~-----gr~KViIIDEah~Ls~~AaNAL 144 (700)
T PRK12323 94 DYIEMDAASN--RGVDEMAQLLDKAVYAPTA-----GRFKVYMIDEVHMLTNHAFNAM 144 (700)
T ss_pred cceEeccccc--CCHHHHHHHHHHHHhchhc-----CCceEEEEEChHhcCHHHHHHH
Confidence 5689999864 3447789988876554321 2699999999999999999874
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=97.50 E-value=0.00013 Score=63.47 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=38.8
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++|||+++. +....||++|+... ..+.. ..|||+||||+|.||..+|+|.
T Consensus 89 DviEIDAas~--rgVDdIReLIe~a~-~~P~~----gr~KVIIIDEah~LT~~A~NAL 139 (830)
T PRK07003 89 DYVEMDAASN--RGVDEMAALLERAV-YAPVD----ARFKVYMIDEVHMLTNHAFNAM 139 (830)
T ss_pred eEEEeccccc--ccHHHHHHHHHHHH-hcccc----CCceEEEEeChhhCCHHHHHHH
Confidence 4789999864 33467899887553 33432 2699999999999999999875
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.49 E-value=0.00012 Score=61.49 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=38.0
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-.+|+|+++. ++..-||++++. ++..+.. ..|||+||||+|.||.++|.|.
T Consensus 94 D~~eldaas~--~~Vd~iReli~~-~~~~p~~----g~~KV~IIDEvh~Ls~~a~NaL 144 (618)
T PRK14951 94 DYTELDAASN--RGVDEVQQLLEQ-AVYKPVQ----GRFKVFMIDEVHMLTNTAFNAM 144 (618)
T ss_pred ceeecCcccc--cCHHHHHHHHHH-HHhCccc----CCceEEEEEChhhCCHHHHHHH
Confidence 3578888754 334678999865 4554532 2699999999999999999874
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.43 E-value=0.00023 Score=58.30 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=40.8
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+..++||||++. +....||++ +++++..+.. ..+|+|||||+|.|+.++|.|.
T Consensus 83 ~h~dv~el~~~~~--~~vd~iR~l-~~~~~~~p~~----~~~kVVIIDEad~ls~~a~naL 136 (504)
T PRK14963 83 AHPDVLEIDAASN--NSVEDVRDL-REKVLLAPLR----GGRKVYILDEAHMMSKSAFNAL 136 (504)
T ss_pred CCCceEEeccccc--CCHHHHHHH-HHHHhhcccc----CCCeEEEEECccccCHHHHHHH
Confidence 5667899999854 456789996 4555554542 2689999999999999998764
>PHA02544 44 clamp loader, small subunit; Provisional
Back Show alignment and domain information
Probab=97.41 E-value=0.00022 Score=52.91 Aligned_cols=66 Identities=15% Similarity=-0.065 Sum_probs=47.0
Q ss_pred CCCCCeEEEEEcc---ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCC-CHHHHhcc
Q psy2304 8 TPSKKKIDIMTTA---SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLV-GNPWHRAS 80 (85)
Q Consensus 8 t~s~k~~eI~~~~---Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~L-T~~AQ~a~ 80 (85)
.++|||.-+..+. ....+++||++ +. ...+++.++++++..+.. .++|+|||||+|.| ++++|.+.
T Consensus 52 ~G~GKT~la~~l~~~~~~~~~~i~~~~-~~--~~~i~~~l~~~~~~~~~~----~~~~vliiDe~d~l~~~~~~~~L 121 (316)
T PHA02544 52 PGTGKTTVAKALCNEVGAEVLFVNGSD-CR--IDFVRNRLTRFASTVSLT----GGGKVIIIDEFDRLGLADAQRHL 121 (316)
T ss_pred CCCCHHHHHHHHHHHhCccceEeccCc-cc--HHHHHHHHHHHHHhhccc----CCCeEEEEECcccccCHHHHHHH
Confidence 4567764333332 23468999999 43 577889999999877653 25899999999999 77777653
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=97.39 E-value=0.00017 Score=61.09 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=37.9
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|+++++.. ...-+|++++++... +.. .+|||+||||||.||.+||.|.
T Consensus 89 D~ieidaas~~--~VddiR~li~~~~~~-p~~----g~~KV~IIDEah~Ls~~a~NAL 139 (647)
T PRK07994 89 DLIEIDAASRT--KVEDTRELLDNVQYA-PAR----GRFKVYLIDEVHMLSRHSFNAL 139 (647)
T ss_pred CceeecccccC--CHHHHHHHHHHHHhh-hhc----CCCEEEEEechHhCCHHHHHHH
Confidence 35899987532 235689988776443 321 2699999999999999999985
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=97.37 E-value=0.00022 Score=61.64 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=37.5
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..++|+|+.+.+ ...-||++++.+ ...+.. ..|||+||||||.||.++|.|.
T Consensus 89 ~dv~eidaas~~--~Vd~iR~l~~~~-~~~p~~----~~~KV~IIDEad~lt~~a~NaL 140 (824)
T PRK07764 89 LDVTEIDAASHG--GVDDARELRERA-FFAPAE----SRYKIFIIDEAHMVTPQGFNAL 140 (824)
T ss_pred CcEEEecccccC--CHHHHHHHHHHH-Hhchhc----CCceEEEEechhhcCHHHHHHH
Confidence 446899886543 347788866543 444432 2699999999999999999874
>PRK05707 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=97.37 E-value=0.0003 Score=54.57 Aligned_cols=52 Identities=23% Similarity=0.193 Sum_probs=39.2
Q ss_pred eeEeCCCCCC-cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAG-IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g-~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+.|.+.+ .+...-||++++.++.++..+ ++||+||||||.|+.+|+.|.
T Consensus 74 ~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~-----~~kv~iI~~a~~m~~~aaNaL 126 (328)
T PRK05707 74 NFVLEPEEADKTIKVDQVRELVSFVVQTAQLG-----GRKVVLIEPAEAMNRNAANAL 126 (328)
T ss_pred EEEEeccCCCCCCCHHHHHHHHHHHhhccccC-----CCeEEEECChhhCCHHHHHHH
Confidence 3566775442 245578999888777765432 699999999999999999874
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.35 E-value=0.00035 Score=58.41 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=37.9
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+|++++..+ +...||+++... ...+.. .+|||+||||||.||.+||.|.
T Consensus 87 ~dvieidaas~~--gvd~iRel~~~~-~~~P~~----~~~KVvIIDEah~Lt~~A~NAL 138 (584)
T PRK14952 87 IDVVELDAASHG--GVDDTRELRDRA-FYAPAQ----SRYRIFIVDEAHMVTTAGFNAL 138 (584)
T ss_pred ceEEEecccccc--CHHHHHHHHHHH-Hhhhhc----CCceEEEEECCCcCCHHHHHHH
Confidence 456899886543 346778866544 544432 2699999999999999999984
>PRK12402 replication factor C small subunit 2; Reviewed
Back Show alignment and domain information
Probab=97.33 E-value=6.5e-05 Score=55.58 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=32.4
Q ss_pred chhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 37 RVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 37 r~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...++++++.+++..+... +.|+|||||+|.|+.++|.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~----~~~vlilDe~~~l~~~~~~~L 145 (337)
T PRK12402 106 IDNFKHVLKEYASYRPLSA----DYKTILLDNAEALREDAQQAL 145 (337)
T ss_pred HHHHHHHHHHHHhcCCCCC----CCcEEEEeCcccCCHHHHHHH
Confidence 4578888889988877632 579999999999999998754
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.33 E-value=0.00021 Score=62.83 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=38.1
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|+++++.. ...-||++++++... +.. .+|||+||||||.|+.+||.|.
T Consensus 90 viEidAas~~--kVDdIReLie~v~~~-P~~----gk~KViIIDEAh~LT~eAqNAL 139 (944)
T PRK14949 90 LIEVDAASRT--KVDDTRELLDNVQYR-PSR----GRFKVYLIDEVHMLSRSSFNAL 139 (944)
T ss_pred EEEecccccc--CHHHHHHHHHHHHhh-hhc----CCcEEEEEechHhcCHHHHHHH
Confidence 4899997642 236789999887543 321 2699999999999999999983
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.21 E-value=0.00048 Score=56.97 Aligned_cols=54 Identities=15% Similarity=0.012 Sum_probs=38.4
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+..++|+++... +...-||+++..+. ..+.. .+|||+||||+|.||.+||.|.
T Consensus 86 ~~~d~~eid~~s~--~~v~~ir~l~~~~~-~~p~~----~~~KVvIIdev~~Lt~~a~naL 139 (576)
T PRK14965 86 RSVDVFEIDGASN--TGVDDIRELRENVK-YLPSR----SRYKIFIIDEVHMLSTNAFNAL 139 (576)
T ss_pred CCCCeeeeeccCc--cCHHHHHHHHHHHH-hcccc----CCceEEEEEChhhCCHHHHHHH
Confidence 3566889986543 22345788776554 44432 2699999999999999999874
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.21 E-value=0.00059 Score=57.10 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=40.4
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+..++|+++++. +....||++++++ ++.+..+ ++|||||||||.|+.+||.|.
T Consensus 89 ~~n~~~ld~~~~--~~vd~Ir~li~~~-~~~P~~~----~~KVvIIdea~~Ls~~a~naL 141 (614)
T PRK14971 89 SYNIHELDAASN--NSVDDIRNLIEQV-RIPPQIG----KYKIYIIDEVHMLSQAAFNAF 141 (614)
T ss_pred CCceEEeccccc--CCHHHHHHHHHHH-hhCcccC----CcEEEEEECcccCCHHHHHHH
Confidence 456789998754 3457899999766 4444432 699999999999999999874
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.17 E-value=0.00068 Score=55.62 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=37.4
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|++++.. .....||+++.. ++..+.. + +|||+||||||.||.+||.|.
T Consensus 89 d~~ei~~~~~--~~vd~ir~l~~~-~~~~p~~--~--~~kVvIIDEad~ls~~a~naL 139 (527)
T PRK14969 89 DLIEVDAASN--TQVDAMRELLDN-AQYAPTR--G--RFKVYIIDEVHMLSKSAFNAM 139 (527)
T ss_pred ceeEeecccc--CCHHHHHHHHHH-HhhCccc--C--CceEEEEcCcccCCHHHHHHH
Confidence 4578887643 345778887755 4555542 2 699999999999999999874
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=97.16 E-value=0.00075 Score=55.71 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=39.4
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+...+|++|+.. ++..-||+++..+.. .|.. .++||+||||+|.||.+|+.|.
T Consensus 87 ~~dv~eidaas~--~~vd~ir~i~~~v~~-~p~~----~~~kViIIDE~~~Lt~~a~naL 139 (559)
T PRK05563 87 LMDVIEIDAASN--NGVDEIRDIRDKVKY-APSE----AKYKVYIIDEVHMLSTGAFNAL 139 (559)
T ss_pred CCCeEEeecccc--CCHHHHHHHHHHHhh-Cccc----CCeEEEEEECcccCCHHHHHHH
Confidence 456789998653 345678888876543 3432 1699999999999999999875
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.16 E-value=0.00063 Score=57.01 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=38.3
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..++|+++... .....||++|+. ++..+... ++|||||||||.|+.+||.|.
T Consensus 90 ~D~~ei~~~~~--~~vd~IReii~~-a~~~p~~~----~~KViIIDEad~Lt~~a~naL 141 (620)
T PRK14948 90 LDVIEIDAASN--TGVDNIRELIER-AQFAPVQA----RWKVYVIDECHMLSTAAFNAL 141 (620)
T ss_pred ccEEEEecccc--CCHHHHHHHHHH-HhhChhcC----CceEEEEECccccCHHHHHHH
Confidence 45678988642 234688999954 45555422 699999999999999999875
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=97.15 E-value=0.0005 Score=57.52 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=37.9
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|++|... ....-||++|. .+++.+... ++|||||||+|.|+..|+.|.
T Consensus 103 v~e~~a~s~--~gvd~IReIie-~~~~~P~~a----~~KVvIIDEad~Ls~~a~naL 152 (598)
T PRK09111 103 VLEMDAASH--TGVDDIREIIE-SVRYRPVSA----RYKVYIIDEVHMLSTAAFNAL 152 (598)
T ss_pred eEEeccccc--CCHHHHHHHHH-HHHhchhcC----CcEEEEEEChHhCCHHHHHHH
Confidence 468888654 33467898875 566666532 699999999999999998874
>PRK07993 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=97.14 E-value=0.00063 Score=52.91 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=39.3
Q ss_pred eEeCCCCC-CcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 25 IEVNPNDA-GIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 25 lElnpSD~-g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+.|... ..+...-||++++.+..++..+ ++||+|||+||.||..|++|.
T Consensus 77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g-----~~kV~iI~~ae~m~~~AaNaL 128 (334)
T PRK07993 77 YTLTPEKGKSSLGVDAVREVTEKLYEHARLG-----GAKVVWLPDAALLTDAAANAL 128 (334)
T ss_pred EEEecccccccCCHHHHHHHHHHHhhccccC-----CceEEEEcchHhhCHHHHHHH
Confidence 34556432 2356688999999988876532 699999999999999999884
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=97.13 E-value=0.00073 Score=55.62 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=40.6
Q ss_pred cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 20 ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 20 ~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.....+|++|... ....-||++|. .|++.|... .+||+||||+|.|+..||.|.
T Consensus 95 ~h~Dv~eidaas~--~~vd~Ir~iie-~a~~~P~~~----~~KVvIIDEa~~Ls~~a~naL 148 (507)
T PRK06645 95 NHPDIIEIDAASK--TSVDDIRRIIE-SAEYKPLQG----KHKIFIIDEVHMLSKGAFNAL 148 (507)
T ss_pred CCCcEEEeeccCC--CCHHHHHHHHH-HHHhccccC----CcEEEEEEChhhcCHHHHHHH
Confidence 3456789998653 34478898884 466666532 699999999999999999874
>PRK05917 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=97.08 E-value=0.00089 Score=51.86 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=37.6
Q ss_pred EeCCCCCC-cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 26 EVNPNDAG-IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 26 ElnpSD~g-~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+.|...+ .+...-||++++++..++.-+ ++||+||++||.||.+||.|.
T Consensus 65 ~i~p~~~~~~I~idqiR~l~~~~~~~p~e~-----~~kv~ii~~ad~mt~~AaNaL 115 (290)
T PRK05917 65 EFSPQGKGRLHSIETPRAIKKQIWIHPYES-----PYKIYIIHEADRMTLDAISAF 115 (290)
T ss_pred EEecCCCCCcCcHHHHHHHHHHHhhCccCC-----CceEEEEechhhcCHHHHHHH
Confidence 45665432 245678899998887764321 699999999999999999984
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.07 E-value=0.00062 Score=58.41 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=37.8
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-.+|+|+++.. ...-||+++..+.... .. + +|||+||||||.|+..||.|.
T Consensus 88 DviEIDAAs~~--~VddIReli~~~~y~P-~~--g--k~KV~IIDEVh~LS~~A~NAL 138 (702)
T PRK14960 88 DLIEIDAASRT--KVEDTRELLDNVPYAP-TQ--G--RFKVYLIDEVHMLSTHSFNAL 138 (702)
T ss_pred ceEEecccccC--CHHHHHHHHHHHhhhh-hc--C--CcEEEEEechHhcCHHHHHHH
Confidence 45899998653 3457888887765432 21 1 699999999999999999874
>PRK07276 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=97.06 E-value=0.00081 Score=51.93 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=38.8
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+.+.|.. ..+...-||++++.++.++.- + ++||+||++||.|+..|+.|.
T Consensus 74 ~~~i~p~~-~~I~idqIR~l~~~~~~~p~~---~--~~kV~II~~ad~m~~~AaNaL 124 (290)
T PRK07276 74 VTVIEPQG-QVIKTDTIRELVKNFSQSGYE---G--KQQVFIIKDADKMHVNAANSL 124 (290)
T ss_pred eeeecCCC-CcCCHHHHHHHHHHHhhCccc---C--CcEEEEeehhhhcCHHHHHHH
Confidence 34666743 234567899999999876432 2 699999999999999999874
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=97.03 E-value=0.0011 Score=54.05 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=37.5
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.-++|++++..++ ..-+|+ |++.++..|..+ .+||+||||||.||.+||.|.
T Consensus 88 ~d~~eidaas~~g--vd~ir~-I~~~~~~~P~~~----~~KVvIIDEad~Lt~~a~naL 139 (486)
T PRK14953 88 PDLIEIDAASNRG--IDDIRA-LRDAVSYTPIKG----KYKVYIIDEAHMLTKEAFNAL 139 (486)
T ss_pred CcEEEEeCccCCC--HHHHHH-HHHHHHhCcccC----CeeEEEEEChhhcCHHHHHHH
Confidence 4567888855432 345666 456667666542 699999999999999999874
>PRK05564 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=97.03 E-value=0.0011 Score=50.05 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=36.4
Q ss_pred eEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 25 IEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 25 lElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++.|.+.+.+...-||+++..+.. .|..+ ++||+||++||.|+.+||.|.
T Consensus 63 ~~~~~~~~~~i~v~~ir~~~~~~~~-~p~~~----~~kv~iI~~ad~m~~~a~naL 113 (313)
T PRK05564 63 IEFKPINKKSIGVDDIRNIIEEVNK-KPYEG----DKKVIIIYNSEKMTEQAQNAF 113 (313)
T ss_pred EEeccccCCCCCHHHHHHHHHHHhc-CcccC----CceEEEEechhhcCHHHHHHH
Confidence 4677754444444568887766544 34332 699999999999999999874
>PRK09112 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=97.02 E-value=0.0011 Score=51.93 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=27.9
Q ss_pred hhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 38 VVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 38 ~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..||++++.+..+... ..+|||||||||.|+.+||.|.
T Consensus 124 d~iR~l~~~l~~~~~~-----g~~rVviIDeAd~l~~~aanaL 161 (351)
T PRK09112 124 DEIRRVGHFLSQTSGD-----GNWRIVIIDPADDMNRNAANAI 161 (351)
T ss_pred HHHHHHHHHhhhcccc-----CCceEEEEEchhhcCHHHHHHH
Confidence 4566665555554322 2699999999999999999884
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=96.95 E-value=0.0011 Score=56.02 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=39.7
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+..++|+++++. ....-||++++.+... |..+ ++||+||||||.||.+||.|.
T Consensus 87 h~DiieIdaas~--igVd~IReIi~~~~~~-P~~~----~~KVIIIDEad~Lt~~A~NaL 139 (605)
T PRK05896 87 SVDIVELDAASN--NGVDEIRNIIDNINYL-PTTF----KYKVYIIDEAHMLSTSAWNAL 139 (605)
T ss_pred CCceEEeccccc--cCHHHHHHHHHHHHhc-hhhC----CcEEEEEechHhCCHHHHHHH
Confidence 467899998753 2346689988777654 4321 589999999999999999864
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=96.87 E-value=0.001 Score=54.10 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=38.0
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|+||++..+ ..-+|+ |++.++..+... .+|+|||||+|.|+.++|.+.
T Consensus 87 dv~el~aa~~~g--id~iR~-i~~~~~~~p~~~----~~kVvIIDE~h~Lt~~a~~~L 137 (472)
T PRK14962 87 DVIELDAASNRG--IDEIRK-IRDAVGYRPMEG----KYKVYIIDEVHMLTKEAFNAL 137 (472)
T ss_pred ccEEEeCcccCC--HHHHHH-HHHHHhhChhcC----CeEEEEEEChHHhHHHHHHHH
Confidence 468999975432 356775 667777766432 689999999999999998764
>TIGR00678 holB DNA polymerase III, delta' subunit
Back Show alignment and domain information
Probab=96.85 E-value=0.0016 Score=45.25 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=30.0
Q ss_pred ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 35 YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 35 ~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+..|+++++.+. +.+.. + ++|+|||||+|.|+.++|.+.
T Consensus 76 ~~~~~i~~i~~~~~-~~~~~--~--~~kviiide~~~l~~~~~~~L 116 (188)
T TIGR00678 76 IKVDQVRELVEFLS-RTPQE--S--GRRVVIIEDAERMNEAAANAL 116 (188)
T ss_pred CCHHHHHHHHHHHc-cCccc--C--CeEEEEEechhhhCHHHHHHH
Confidence 34567888775554 43432 2 699999999999999998763
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=96.84 E-value=0.0017 Score=53.57 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=37.3
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..++|+|+++. +...-+|+++.. ++..+... .+|||||||+|.|+.+++.+.
T Consensus 89 ~d~~~i~~~~~--~~vd~ir~ii~~-~~~~p~~~----~~kVvIIDEa~~L~~~a~naL 140 (585)
T PRK14950 89 VDVIEMDAASH--TSVDDAREIIER-VQFRPALA----RYKVYIIDEVHMLSTAAFNAL 140 (585)
T ss_pred CeEEEEecccc--CCHHHHHHHHHH-HhhCcccC----CeEEEEEeChHhCCHHHHHHH
Confidence 45688998653 334667887744 45545432 699999999999999998764
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=96.80 E-value=0.0018 Score=55.68 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=37.2
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++|+++. +......||+++..+... |.. .++||+||||||.||.+||.|.
T Consensus 88 Dvieidaa--sn~~vd~IReLie~~~~~-P~~----g~~KV~IIDEa~~LT~~A~NAL 138 (725)
T PRK07133 88 DIIEMDAA--SNNGVDEIRELIENVKNL-PTQ----SKYKIYIIDEVHMLSKSAFNAL 138 (725)
T ss_pred cEEEEecc--ccCCHHHHHHHHHHHHhc-hhc----CCCEEEEEEChhhCCHHHHHHH
Confidence 35778763 234456789988776544 432 2699999999999999999875
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=96.77 E-value=0.0018 Score=54.81 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=36.9
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+|+++++.. ....+|++++.+... +.. + .+|||||||||.|+.++|.+.
T Consensus 88 pDv~eId~a~~~--~Id~iR~L~~~~~~~-p~~--g--~~kVIIIDEad~Lt~~a~naL 139 (624)
T PRK14959 88 VDVVEIDGASNR--GIDDAKRLKEAIGYA-PME--G--RYKVFIIDEAHMLTREAFNAL 139 (624)
T ss_pred CceEEEeccccc--CHHHHHHHHHHHHhh-hhc--C--CceEEEEEChHhCCHHHHHHH
Confidence 346899886542 346788865555433 432 1 699999999999999999774
>PRK06090 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=96.74 E-value=0.0023 Score=49.88 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=35.8
Q ss_pred eeEeCCCCCC-cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAG-IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g-~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+.|...| .+...-||++++.+..+... .++||+||++||.|+..|+.|.
T Consensus 76 ~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~-----~~~kV~iI~~ae~m~~~AaNaL 128 (319)
T PRK06090 76 LHVIKPEKEGKSITVEQIRQCNRLAQESSQL-----NGYRLFVIEPADAMNESASNAL 128 (319)
T ss_pred EEEEecCcCCCcCCHHHHHHHHHHHhhCccc-----CCceEEEecchhhhCHHHHHHH
Confidence 3456675432 34456778776555554332 2699999999999999999884
>PRK07471 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=96.71 E-value=0.0021 Score=50.63 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=32.7
Q ss_pred ceeEeCCCCCCc-----ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGI-----YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~-----~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
++||-++++.|. +...=||++++.+..+.. ...+|||||||||.|+.+||+|.
T Consensus 104 ~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~-----~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 104 LTLERSWNEKGKRLRTVITVDEVRELISFFGLTAA-----EGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred EEEecccccccccccccccHHHHHHHHHHhCcCcc-----cCCCEEEEEechHhcCHHHHHHH
Confidence 345555555442 222345555544433321 22699999999999999999874
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=96.68 E-value=0.0028 Score=49.15 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=33.7
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|++|++.. ...-+++++..+. ..+.. ..+||+||||||.|+.+||.|.
T Consensus 89 d~~~~~~~~~~--~v~~ir~i~~~~~-~~p~~----~~~kviIIDEa~~l~~~a~naL 139 (363)
T PRK14961 89 DLIEIDAASRT--KVEEMREILDNIY-YSPSK----SRFKVYLIDEVHMLSRHSFNAL 139 (363)
T ss_pred ceEEecccccC--CHHHHHHHHHHHh-cCccc----CCceEEEEEChhhcCHHHHHHH
Confidence 35777776521 1244666665543 33322 2689999999999999999763
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=96.68 E-value=0.0024 Score=54.88 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=37.0
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|+++++.. ....||++++. ++..+.. + .+||+||||+|.|+..|+.|.
T Consensus 90 vlEidaAs~~--gVd~IRelle~-a~~~P~~--g--k~KVIIIDEad~Ls~~A~NAL 139 (709)
T PRK08691 90 LLEIDAASNT--GIDNIREVLEN-AQYAPTA--G--KYKVYIIDEVHMLSKSAFNAM 139 (709)
T ss_pred eEEEeccccC--CHHHHHHHHHH-HHhhhhh--C--CcEEEEEECccccCHHHHHHH
Confidence 4899987643 33578888865 4554432 1 699999999999999998763
>PRK08058 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=96.62 E-value=0.0026 Score=48.87 Aligned_cols=41 Identities=5% Similarity=-0.029 Sum_probs=31.9
Q ss_pred ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 35 YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 35 ~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....-||++++.+..++.. + ++||+||||||.|+.+||.|.
T Consensus 90 i~id~ir~l~~~~~~~~~~---~--~~kvviI~~a~~~~~~a~NaL 130 (329)
T PRK08058 90 IKKDQIRYLKEEFSKSGVE---S--NKKVYIIEHADKMTASAANSL 130 (329)
T ss_pred CCHHHHHHHHHHHhhCCcc---c--CceEEEeehHhhhCHHHHHHH
Confidence 3446788888877766432 2 689999999999999999874
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau
Back Show alignment and domain information
Probab=96.58 E-value=0.004 Score=46.61 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=37.2
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..++++||++. .....+++++... ++.+... ++|+|||||||.|+.+++.+.
T Consensus 86 ~~~~~~~~~~~--~~~~~~~~l~~~~-~~~p~~~----~~~vviidea~~l~~~~~~~L 137 (355)
T TIGR02397 86 LDVIEIDAASN--NGVDDIREILDNV-KYAPSSG----KYKVYIIDEVHMLSKSAFNAL 137 (355)
T ss_pred CCEEEeecccc--CCHHHHHHHHHHH-hcCcccC----CceEEEEeChhhcCHHHHHHH
Confidence 34689999753 2345677777664 4444432 689999999999999988764
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=96.51 E-value=0.0036 Score=52.11 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=36.5
Q ss_pred cceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+|+++.... +..-++++++.+.. .+.. + .+||+||||||.|+.+||.|.
T Consensus 88 ~dlieidaas~~--gvd~ir~ii~~~~~-~p~~--g--~~kViIIDEa~~ls~~a~naL 139 (546)
T PRK14957 88 IDLIEIDAASRT--GVEETKEILDNIQY-MPSQ--G--RYKVYLIDEVHMLSKQSFNAL 139 (546)
T ss_pred CceEEeeccccc--CHHHHHHHHHHHHh-hhhc--C--CcEEEEEechhhccHHHHHHH
Confidence 356788874432 23567888876643 3432 2 699999999999999999864
>PRK06964 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=96.43 E-value=0.0028 Score=49.84 Aligned_cols=40 Identities=8% Similarity=-0.123 Sum_probs=29.3
Q ss_pred cchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 36 DRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 36 Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...=||++++.+..+ +.. .++||+||++||.|+.+|+.|.
T Consensus 113 ~idqiR~l~~~~~~~-~~~----~~~kV~iI~~ae~m~~~AaNaL 152 (342)
T PRK06964 113 KIEQVRALLDFCGVG-THR----GGARVVVLYPAEALNVAAANAL 152 (342)
T ss_pred CHHHHHHHHHHhccC-Ccc----CCceEEEEechhhcCHHHHHHH
Confidence 345677777655444 322 1699999999999999999874
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=96.36 E-value=0.0062 Score=47.83 Aligned_cols=51 Identities=10% Similarity=-0.019 Sum_probs=34.9
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
..+|+++++.. ...-|++++..+... |..+ ++|+|||||||.|+..+|.+.
T Consensus 97 n~~~~~~~~~~--~id~Ir~l~~~~~~~-p~~~----~~kvvIIdea~~l~~~~~~~L 147 (397)
T PRK14955 97 NISEFDAASNN--SVDDIRLLRENVRYG-PQKG----RYRVYIIDEVHMLSIAAFNAF 147 (397)
T ss_pred CeEeecccccC--CHHHHHHHHHHHhhc-hhcC----CeEEEEEeChhhCCHHHHHHH
Confidence 45677775542 236677766555433 4322 699999999999999888753
>PRK07399 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=96.24 E-value=0.0036 Score=48.30 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=28.6
Q ss_pred hhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 39 VVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 39 VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-||++ .++++.+|..+ ++||||||+||.|+.+|+.|.
T Consensus 108 ~ir~i-~~~l~~~p~~~----~~kVvII~~ae~m~~~aaNaL 144 (314)
T PRK07399 108 QIREI-KRFLSRPPLEA----PRKVVVIEDAETMNEAAANAL 144 (314)
T ss_pred HHHHH-HHHHccCcccC----CceEEEEEchhhcCHHHHHHH
Confidence 56664 45566666542 699999999999999999874
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=96.16 E-value=0.0065 Score=48.98 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=35.1
Q ss_pred ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+..++|+++++.. ...-++++...+..... . .++|||||||||.|+.++|.+.
T Consensus 89 ~~d~~~i~g~~~~--gid~ir~i~~~l~~~~~-~----~~~kvvIIdead~lt~~~~n~L 141 (451)
T PRK06305 89 SLDVLEIDGASHR--GIEDIRQINETVLFTPS-K----SRYKIYIIDEVHMLTKEAFNSL 141 (451)
T ss_pred CCceEEeeccccC--CHHHHHHHHHHHHhhhh-c----CCCEEEEEecHHhhCHHHHHHH
Confidence 3457899875432 22556665554443321 1 2699999999999999998763
>PRK07940 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=96.07 E-value=0.0057 Score=48.79 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=28.6
Q ss_pred hhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 38 VVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 38 ~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.=||++++.+... +.. .++||+||||||.|+..||.|.
T Consensus 100 ~~iR~l~~~~~~~-p~~----~~~kViiIDead~m~~~aanaL 137 (394)
T PRK07940 100 DEVRELVTIAARR-PST----GRWRIVVIEDADRLTERAANAL 137 (394)
T ss_pred HHHHHHHHHHHhC-ccc----CCcEEEEEechhhcCHHHHHHH
Confidence 4478877666554 321 2699999999999999999764
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=96.01 E-value=0.0049 Score=51.28 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=35.1
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
-.|||.+-- +.+..=||+++.+. +..|.. ..|||.||||+|.||..|+.|.
T Consensus 89 DviEiDaAS--n~gVddiR~i~e~v-~y~P~~----~ryKVyiIDEvHMLS~~afNAL 139 (515)
T COG2812 89 DVIEIDAAS--NTGVDDIREIIEKV-NYAPSE----GRYKVYIIDEVHMLSKQAFNAL 139 (515)
T ss_pred cchhhhhhh--ccChHHHHHHHHHh-ccCCcc----ccceEEEEecHHhhhHHHHHHH
Confidence 345664422 12336678877765 444442 2699999999999999999985
>PRK06581 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=95.98 E-value=0.008 Score=46.59 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=33.5
Q ss_pred cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 34 IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 34 ~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+...-||++++.+..++..+ ++||+||++||.|+.+|+.|.
T Consensus 68 ~I~IdqIReL~~~l~~~p~~g-----~~KViII~~ae~mt~~AANAL 109 (263)
T PRK06581 68 NISIEQIRKLQDFLSKTSAIS-----GYKVAIIYSAELMNLNAANSC 109 (263)
T ss_pred cccHHHHHHHHHHHhhCcccC-----CcEEEEEechHHhCHHHHHHH
Confidence 456678899888777664432 699999999999999999874
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=95.79 E-value=0.015 Score=44.44 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=34.6
Q ss_pred eEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 25 IEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 25 lElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+|+++.+ ..+...++++++++... |.. + ++|+|||||+|.|+..+|.+.
T Consensus 80 ~~l~~~~--~~~~~~i~~l~~~~~~~-p~~--~--~~kiviIDE~~~l~~~~~~~l 128 (367)
T PRK14970 80 FELDAAS--NNSVDDIRNLIDQVRIP-PQT--G--KYKIYIIDEVHMLSSAAFNAF 128 (367)
T ss_pred EEecccc--CCCHHHHHHHHHHHhhc-ccc--C--CcEEEEEeChhhcCHHHHHHH
Confidence 5666543 24457788888876443 332 1 589999999999999888763
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Back Show alignment and domain information
Probab=95.76 E-value=0.015 Score=49.13 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=35.3
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+.|+++... ....-||+++.++... |..+ ++|||||||||.|+.+||.|.
T Consensus 97 n~~~~d~~s~--~~vd~Ir~l~e~~~~~-P~~~----~~KVvIIdEad~Lt~~a~naL 147 (620)
T PRK14954 97 NISEFDAASN--NSVDDIRQLRENVRYG-PQKG----RYRVYIIDEVHMLSTAAFNAF 147 (620)
T ss_pred CeEEeccccc--CCHHHHHHHHHHHHhh-hhcC----CCEEEEEeChhhcCHHHHHHH
Confidence 4467766332 2236788877777544 3322 699999999999999998763
>PRK07132 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=95.40 E-value=0.02 Score=44.23 Aligned_cols=39 Identities=10% Similarity=-0.123 Sum_probs=26.7
Q ss_pred HHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 42 ELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 42 ~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+.|.++.++-+..+..+.++|||||++||.|+..||.|.
T Consensus 72 d~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaL 110 (299)
T PRK07132 72 SEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNAL 110 (299)
T ss_pred HHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHH
Confidence 344444444444332223799999999999999999873
>PRK08699 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=95.38 E-value=0.033 Score=43.25 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=37.2
Q ss_pred cceeEeCCC----CCC----cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 22 NYHIEVNPN----DAG----IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 22 n~hlElnpS----D~g----~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....+++|. +.| .+...-||++++.+..+ +.. .++||+|++++|.|+..||.+.
T Consensus 72 pD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~-p~~----~~~kV~iiEp~~~Ld~~a~naL 133 (325)
T PRK08699 72 PDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLT-SVR----GGLRVILIHPAESMNLQAANSL 133 (325)
T ss_pred CCEEEEecccccccccccCCCcCHHHHHHHHHHHhhC-ccc----CCceEEEEechhhCCHHHHHHH
Confidence 445788883 122 13456789876555443 432 1699999999999999999874
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Back Show alignment and domain information
Probab=95.35 E-value=0.027 Score=46.91 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=32.6
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+|+++... ....-||+++. .++..|... ++||+||||+|.|+..||.|.
T Consensus 90 v~~idgas~--~~vddIr~l~e-~~~~~p~~~----~~KVvIIDEa~~Ls~~a~naL 139 (563)
T PRK06647 90 VIEIDGASN--TSVQDVRQIKE-EIMFPPASS----RYRVYIIDEVHMLSNSAFNAL 139 (563)
T ss_pred eEEecCccc--CCHHHHHHHHH-HHHhchhcC----CCEEEEEEChhhcCHHHHHHH
Confidence 466765321 12245565443 345555432 699999999999999999875
>PRK05818 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=94.96 E-value=0.019 Score=44.11 Aligned_cols=49 Identities=4% Similarity=-0.046 Sum_probs=35.3
Q ss_pred eCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 27 VNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 27 lnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+.|.. ..+.+.-||++++.+.....- ..++||+||++||.|+..|..|.
T Consensus 60 i~p~~-~~I~id~ir~l~~~l~~~s~e----~~~~KV~II~~ae~m~~~AaNaL 108 (261)
T PRK05818 60 IFDQK-NPIKKEDALSIINKLNRPSVE----SNGKKIYIIYGIEKLNKQSANSL 108 (261)
T ss_pred ecCCc-ccCCHHHHHHHHHHHccCchh----cCCCEEEEeccHhhhCHHHHHHH
Confidence 44542 234567889988888754311 12699999999999999999874
>PRK13342 recombination factor protein RarA; Reviewed
Back Show alignment and domain information
Probab=94.96 E-value=0.033 Score=43.83 Aligned_cols=65 Identities=12% Similarity=0.013 Sum_probs=44.1
Q ss_pred CCCCCeEEEEEcc---ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 8 TPSKKKIDIMTTA---SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 8 t~s~k~~eI~~~~---Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++|||.-...++ ....+++|+++.|. .-++++++........ ...+++||||+|.|+..+|.+.
T Consensus 45 pGtGKTtLA~~ia~~~~~~~~~l~a~~~~~---~~ir~ii~~~~~~~~~-----g~~~vL~IDEi~~l~~~~q~~L 112 (413)
T PRK13342 45 PGTGKTTLARIIAGATDAPFEALSAVTSGV---KDLREVIEEARQRRSA-----GRRTILFIDEIHRFNKAQQDAL 112 (413)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEecccccH---HHHHHHHHHHHHhhhc-----CCceEEEEechhhhCHHHHHHH
Confidence 4667764443332 24568899998764 4567777776543321 1579999999999999998763
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Back Show alignment and domain information
Probab=94.51 E-value=0.011 Score=50.59 Aligned_cols=66 Identities=9% Similarity=-0.062 Sum_probs=43.7
Q ss_pred CCCCCeEEEEEc---cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 8 TPSKKKIDIMTT---ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 8 t~s~k~~eI~~~---~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+++|||.-...+ ....++++|+++.|.. -+++.++++.+..... ...+++||||+|.|+..+|.|.
T Consensus 61 pGtGKTTLA~aIA~~~~~~f~~lna~~~~i~---dir~~i~~a~~~l~~~----~~~~IL~IDEIh~Ln~~qQdaL 129 (725)
T PRK13341 61 PGVGKTTLARIIANHTRAHFSSLNAVLAGVK---DLRAEVDRAKERLERH----GKRTILFIDEVHRFNKAQQDAL 129 (725)
T ss_pred CCCCHHHHHHHHHHHhcCcceeehhhhhhhH---HHHHHHHHHHHHhhhc----CCceEEEEeChhhCCHHHHHHH
Confidence 567777443333 2345689999987653 3567777654432221 1478999999999999999763
>KOG1969|consensus
Back Show alignment and domain information
Probab=94.25 E-value=0.066 Score=47.15 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=38.8
Q ss_pred cccc-eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCC
Q psy2304 20 ASNY-HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLV 72 (85)
Q Consensus 20 ~Sn~-hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~L 72 (85)
.+.| ++||||||++.- .+|.+.|-..-++..+..... .=+.+|+||.|-=
T Consensus 349 qaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~ads-rP~CLViDEIDGa 399 (877)
T KOG1969|consen 349 QAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADS-RPVCLVIDEIDGA 399 (877)
T ss_pred hcCceEEEecccccccH--HHHHHHHHHHHhhccccccCC-CcceEEEecccCC
Confidence 3444 699999998664 899999999999988754322 3578999999953
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin
Back Show alignment and domain information
Probab=89.93 E-value=0.12 Score=35.73 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCCCHHHHhcccccc
Q psy2304 60 DFKGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
...+||+||||+|-..+....|..|
T Consensus 145 ~~~ivI~DEAHNL~~~~~~~~s~~i 169 (174)
T PF06733_consen 145 KDNIVIFDEAHNLEDAARDSFSFSI 169 (174)
T ss_dssp CCEEEEETTGGGCGGGCHCCC-EEE
T ss_pred cCcEEEEecccchHHHHHHHhccee
Confidence 5689999999999988887776543
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
>TIGR02928 orc1/cdc6 family replication initiation protein
Back Show alignment and domain information
Probab=88.45 E-value=0.19 Score=37.86 Aligned_cols=67 Identities=13% Similarity=-0.023 Sum_probs=39.9
Q ss_pred CCCCCeEEEEEccc------------cceeEeCCCCCCcccchhhHHHHHHHhh-cCcCCC----------------CCC
Q psy2304 8 TPSKKKIDIMTTAS------------NYHIEVNPNDAGIYDRVVVMELIKNVAQ-TNQLDP----------------NGQ 58 (85)
Q Consensus 8 t~s~k~~eI~~~~S------------n~hlElnpSD~g~~Dr~VVq~~IK~~A~-t~~~~~----------------~~~ 58 (85)
+++|||.-+..+.. -.++++|+..... ...+.+.+.+.+.. ...... ...
T Consensus 49 ~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 127 (365)
T TIGR02928 49 TGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT-LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER 127 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC-HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 46788765554432 2578999986532 24677777777753 111100 011
Q ss_pred CceeEEEEcCCCCCCHH
Q psy2304 59 RDFKGKFVARGPLVGNP 75 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~ 75 (85)
.+..||||||+|.|...
T Consensus 128 ~~~~vlvIDE~d~L~~~ 144 (365)
T TIGR02928 128 GDSLIIVLDEIDYLVGD 144 (365)
T ss_pred CCeEEEEECchhhhccC
Confidence 24679999999999643
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
>smart00488 DEXDc2 DEAD-like helicases superfamily
Back Show alignment and domain information
Probab=86.16 E-value=0.43 Score=36.22 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCCHHHHhcccccc
Q psy2304 60 DFKGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
+..++|+||||+|-..|..+.|..+
T Consensus 236 ~~~~lIiDEAHnL~d~a~~~~s~~l 260 (289)
T smart00488 236 KDSIVIFDEAHNLDNVCISALSSEL 260 (289)
T ss_pred cccEEEEeCccChHHHHHHHhcCee
Confidence 4689999999999999988877654
>smart00489 DEXDc3 DEAD-like helicases superfamily
Back Show alignment and domain information
Probab=86.16 E-value=0.43 Score=36.22 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCCHHHHhcccccc
Q psy2304 60 DFKGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
+..++|+||||+|-..|..+.|..+
T Consensus 236 ~~~~lIiDEAHnL~d~a~~~~s~~l 260 (289)
T smart00489 236 KDSIVIFDEAHNLDNVCISALSSEL 260 (289)
T ss_pred cccEEEEeCccChHHHHHHHhcCee
Confidence 4689999999999999988877654
>cd00046 DEXDc DEAD-like helicases superfamily
Back Show alignment and domain information
Probab=85.67 E-value=0.25 Score=30.13 Aligned_cols=19 Identities=5% Similarity=-0.064 Sum_probs=15.5
Q ss_pred CceeEEEEcCCCCCCHHHH
Q psy2304 59 RDFKGKFVARGPLVGNPWH 77 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ 77 (85)
..++++|+||+|.+.+...
T Consensus 102 ~~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 102 KKLDLLILDEAHRLLNQGF 120 (144)
T ss_pred hcCCEEEEeCHHHHhhcch
Confidence 3689999999999876643
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=85.30 E-value=0.31 Score=38.63 Aligned_cols=70 Identities=7% Similarity=-0.028 Sum_probs=46.6
Q ss_pred eCCCCCeEEEEEc-------cccc-eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCC-------------CCCceeEEE
Q psy2304 7 NTPSKKKIDIMTT-------ASNY-HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPN-------------GQRDFKGKF 65 (85)
Q Consensus 7 ~t~s~k~~eI~~~-------~Sn~-hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~-------------~~~~fKvvv 65 (85)
.|++|||..+..+ +.+. ++.+||-..+.. ..|...+...+.+.+..+.. .....=+||
T Consensus 50 ~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~-~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~Ivv 128 (366)
T COG1474 50 PTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP-YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVI 128 (366)
T ss_pred CCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH-HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEE
Confidence 3788998766555 3445 899999887553 35777777777533322211 233567999
Q ss_pred EcCCCCCCHHHH
Q psy2304 66 VARGPLVGNPWH 77 (85)
Q Consensus 66 LdEAD~LT~~AQ 77 (85)
|||+|.|-...|
T Consensus 129 LDEid~L~~~~~ 140 (366)
T COG1474 129 LDEVDALVDKDG 140 (366)
T ss_pred Ecchhhhccccc
Confidence 999999987654
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Back Show alignment and domain information
Probab=81.18 E-value=0.88 Score=38.68 Aligned_cols=24 Identities=4% Similarity=-0.130 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCCHHHHhccccc
Q psy2304 60 DFKGKFVARGPLVGNPWHRASSLQ 83 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~~~~ 83 (85)
.+.++|+||||+|-..|..+.+.+
T Consensus 246 ~~~~lViDEAH~L~d~A~~~~~~~ 269 (697)
T PRK11747 246 ENLLYVLDEGHHLPDVARDHFAAS 269 (697)
T ss_pred CCCEEEEECccchHHHHHHHhhhh
Confidence 489999999999999888765544
>smart00487 DEXDc DEAD-like helicases superfamily
Back Show alignment and domain information
Probab=81.16 E-value=0.38 Score=31.18 Aligned_cols=15 Identities=0% Similarity=-0.077 Sum_probs=13.5
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
+++++||||||.+.+
T Consensus 129 ~~~~iIiDE~h~~~~ 143 (201)
T smart00487 129 NVDLVILDEAHRLLD 143 (201)
T ss_pred HCCEEEEECHHHHhc
Confidence 578999999999986
>TIGR02902 spore_lonB ATP-dependent protease LonB
Back Show alignment and domain information
Probab=80.87 E-value=1.9 Score=35.56 Aligned_cols=21 Identities=5% Similarity=-0.290 Sum_probs=18.4
Q ss_pred ceeEEEEcCCCCCCHHHHhcc
Q psy2304 60 DFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
...+++|||+|.|+.++|.+.
T Consensus 175 ~gG~L~IdEI~~L~~~~q~~L 195 (531)
T TIGR02902 175 HGGVLFIDEIGELHPVQMNKL 195 (531)
T ss_pred CCcEEEEechhhCCHHHHHHH
Confidence 357999999999999999864
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative
Back Show alignment and domain information
Probab=80.49 E-value=0.76 Score=39.67 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCCHHHHhccccc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRASSLQ 83 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~~~~ 83 (85)
+.++++|+||||+|-..|....+.+
T Consensus 439 p~~~~lIiDEAH~L~d~a~~~~~~~ 463 (850)
T TIGR01407 439 PSFRDLIIDEAHHLPDIAENQLQEE 463 (850)
T ss_pred CCCCEEEEECcchHHHHHHHHhcce
Confidence 4679999999999999888776544
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
>smart00382 AAA ATPases associated with a variety of cellular activities
Back Show alignment and domain information
Probab=80.34 E-value=3.3 Score=24.86 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=22.7
Q ss_pred hHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 40 VMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 40 Vq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
....+.++|+... ..++++||++.+....+..
T Consensus 66 ~~~~~~~~~~~~~--------~~viiiDei~~~~~~~~~~ 97 (148)
T smart00382 66 RLRLALALARKLK--------PDVLILDEITSLLDAEQEA 97 (148)
T ss_pred HHHHHHHHHHhcC--------CCEEEEECCcccCCHHHHH
Confidence 3345555555422 6899999999999887765
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
>PRK08485 DNA polymerase III subunit delta'; Validated
Back Show alignment and domain information
Probab=80.17 E-value=3 Score=31.41 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=27.0
Q ss_pred ccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 35 YDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 35 ~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
....-+|+++++..-..+ .-|+ |+++||.||..|+.|.
T Consensus 37 i~Vd~iReii~~~~~~~~-------~~k~-iI~~a~~l~~~A~NaL 74 (206)
T PRK08485 37 FKIEDAKEVIAEAYIAES-------EEKI-IVIAAPSYGIEAQNAL 74 (206)
T ss_pred CCHHHHHHHHHHHhhCCC-------CcEE-EEEchHhhCHHHHHHH
Confidence 344778998888655421 2344 5779999999999984
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4
Back Show alignment and domain information
Probab=80.16 E-value=0.88 Score=38.88 Aligned_cols=26 Identities=15% Similarity=0.000 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCCHHHHhcccccc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRASSLQI 84 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~~~~~ 84 (85)
|.+-.+|+||||+|...|..+.+.++
T Consensus 205 P~~~~lIiDEAH~L~d~A~~~~g~~l 230 (636)
T TIGR03117 205 PQPDILIVDEAHLFEQNISRVYSNAL 230 (636)
T ss_pred CCCCEEEEeCCcchHHHHHHHhccEE
Confidence 46899999999999999998876553
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Back Show alignment and domain information
Probab=80.16 E-value=0.89 Score=39.84 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCCHHHHhccccc
Q psy2304 59 RDFKGKFVARGPLVGNPWHRASSLQ 83 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~AQ~a~~~~ 83 (85)
|++.++|+||||+|...|..+.+.+
T Consensus 454 p~~~~lViDEAH~l~d~A~~~~~~~ 478 (928)
T PRK08074 454 PSYEHIIIDEAHHFEEAASRHLGEQ 478 (928)
T ss_pred CCCCeEEEECCchHHHHHHHHhcce
Confidence 4699999999999999997665543
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 85
d1sxje2 252
Replication factor C5 {Baker's yeast (Saccharomyce
98.49 d2gnoa2 198
gamma subunit of DNA polymerase III, N-domain {The
98.3 d1sxjb2 224
Replication factor C4 {Baker's yeast (Saccharomyce
98.09 d1njfa_ 239
delta prime subunit of DNA polymerase III, N-domai
98.07 d1a5ta2 207
delta prime subunit of DNA polymerase III, N-domai
97.83 d1sxjc2 227
Replication factor C3 {Baker's yeast (Saccharomyce
97.54 d1sxjd2 237
Replication factor C2 {Baker's yeast (Saccharomyce
97.41 d1iqpa2 231
Replication factor C {Archaeon Pyrococcus furiosus
96.73 d1sxja2 253
Replication factor C1 {Baker's yeast (Saccharomyce
95.09 d1yksa1 140
YFV helicase domain {Yellow fever virus [TaxId: 11
94.34 d1a1va1 136
HCV helicase domain {Human hepatitis C virus (HCV)
92.28 d1ixsb2 239
Holliday junction helicase RuvB {Thermus thermophi
87.25 d2bmfa2 305
Dengue virus helicase {Dengue virus type 2 [TaxId:
86.18 d1t6na_ 207
Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo
81.76 d2fz4a1 206
DNA repair protein RAD25 {Archaeoglobus fulgidus [
81.3
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
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class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=6.6e-08 Score=65.16 Aligned_cols=73 Identities=32% Similarity=0.486 Sum_probs=48.9
Q ss_pred eCCCCCeEEEEEccccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCC-----CCCceeEEEEcCCCCCCHHHHhc
Q psy2304 7 NTPSKKKIDIMTTASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPN-----GQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 7 ~t~s~k~~eI~~~~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~-----~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
...+++..++....+++|+++++++.|..++..+.+.++..+....+... ..+.+|++||||+|.|+.++|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~ 150 (252)
T d1sxje2 73 VTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAA 150 (252)
T ss_dssp ----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHH
T ss_pred cccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchh
Confidence 34556667777889999999999999999999999999999988877421 23469999999999999999976
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]
Probab=98.30 E-value=3.3e-07 Score=62.89 Aligned_cols=51 Identities=10% Similarity=-0.087 Sum_probs=38.9
Q ss_pred eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 24 HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 24 hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++++|.. ..++..-||++++ +++.++..+ .+||+||||||.|+.+||.|.
T Consensus 49 ~~~i~~~~-~~I~Id~IR~i~~-~~~~~~~~~----~~KviIId~ad~l~~~aqNaL 99 (198)
T d2gnoa2 49 VLEIDPEG-ENIGIDDIRTIKD-FLNYSPELY----TRKYVIVHDCERMTQQAANAF 99 (198)
T ss_dssp EEEECCSS-SCBCHHHHHHHHH-HHTSCCSSS----SSEEEEETTGGGBCHHHHHHT
T ss_pred EEEEeCCc-CCCCHHHHHHHHH-HHhhCcccC----CCEEEEEeCccccchhhhhHH
Confidence 68999953 3456688999555 555555422 699999999999999999985
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.09 E-value=2.3e-06 Score=57.48 Aligned_cols=69 Identities=19% Similarity=0.081 Sum_probs=52.5
Q ss_pred CCCCCeEEEEEc--------cccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 8 TPSKKKIDIMTT--------ASNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 8 t~s~k~~eI~~~--------~Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
.++|||.-+..+ ....++|+|++|.++. ..+++.++.++++..... ...+|+||+||+|.|+..+|.|
T Consensus 45 ~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~--~~i~~~~~~~~~~~~~~~--~~~~kviiiDe~d~~~~~~~~~ 120 (224)
T d1sxjb2 45 PGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI--DVVRNQIKHFAQKKLHLP--PGKHKIVILDEADSMTAGAQQA 120 (224)
T ss_dssp TTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH--HHHHTHHHHHHHBCCCCC--TTCCEEEEEESGGGSCHHHHHT
T ss_pred CCCCchhhHHHHHHHHhccccccccccccccccCCc--eehhhHHHHHHHhhccCC--CcceEEEEEecccccchhHHHH
Confidence 356776544333 1345899999998654 889999999998876532 2368999999999999999988
Q ss_pred c
Q psy2304 80 S 80 (85)
Q Consensus 80 ~ 80 (85)
.
T Consensus 121 l 121 (224)
T d1sxjb2 121 L 121 (224)
T ss_dssp T
T ss_pred H
Confidence 5
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=1.1e-06 Score=60.38 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=38.4
Q ss_pred ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 23 YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 23 ~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.++|+|+++... ...++++++.+..+.. . .++|++||||||.|+.+||.|.
T Consensus 85 ~~~~~~~~~~~~--i~~ir~~~~~~~~~~~-~----~~~kviiIde~d~l~~~~q~~L 135 (239)
T d1njfa_ 85 DLIEIDAASRTK--VEDTRDLLDNVQYAPA-R----GRFKVYLIDEVHMLSRHSFNAL 135 (239)
T ss_dssp TEEEEETTCSSS--HHHHHHHHHSCCCSCS-S----SSSEEEEEETGGGSCHHHHHHH
T ss_pred eEEEecchhcCC--HHHHHHHHHHHHhccc-c----CCCEEEEEECcccCCHHHHHHH
Confidence 368999988643 3568888877754432 1 2689999999999999999874
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=9.3e-06 Score=55.13 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=40.1
Q ss_pred ccceeEeCCCCCC-cccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 21 SNYHIEVNPNDAG-IYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 21 Sn~hlElnpSD~g-~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
.+...++++++.+ .....-||++++.+..+... + .+|++||||||.|+.+||.|.
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~ir~l~~~~~~~~~~---~--~~kviIide~d~l~~~a~n~L 128 (207)
T d1a5ta2 73 HPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARL---G--GAKVVWVTDAALLTDAAANAL 128 (207)
T ss_dssp CTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTT---S--SCEEEEESCGGGBCHHHHHHH
T ss_pred ccccchhhhhhcccccccchhhHHhhhhhhcccc---C--ccceEEechhhhhhhhhhHHH
Confidence 3445778887763 44456788888876554322 1 699999999999999999875
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.54 E-value=5.3e-05 Score=50.24 Aligned_cols=68 Identities=28% Similarity=0.254 Sum_probs=51.4
Q ss_pred CCCCCeEEEEEcc--------ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 8 TPSKKKIDIMTTA--------SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 8 t~s~k~~eI~~~~--------Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
+++|||.-+..+. ...++|+|+++.++. .+....++.++....+.. ..+|++||||+|.|+..+|.+
T Consensus 44 ~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~kiiiiDe~d~~~~~~~~~ 118 (227)
T d1sxjc2 44 PGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI--DVVRNQIKDFASTRQIFS---KGFKLIILDEADAMTNAAQNA 118 (227)
T ss_dssp SSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH--HHHHTHHHHHHHBCCSSS---CSCEEEEETTGGGSCHHHHHH
T ss_pred CCCChhHHHHHHHHHhhcCCCcceeEEecccccCCe--eeeecchhhccccccccC---CCeEEEEEeccccchhhHHHH
Confidence 4567764444442 344799999998654 788888888888876632 368999999999999999987
Q ss_pred c
Q psy2304 80 S 80 (85)
Q Consensus 80 ~ 80 (85)
.
T Consensus 119 L 119 (227)
T d1sxjc2 119 L 119 (227)
T ss_dssp H
T ss_pred H
Confidence 5
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.41 E-value=0.00012 Score=48.27 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=52.3
Q ss_pred CCCCCeEEEEEcc---------ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCC-------CCCceeEEEEcCCCC
Q psy2304 8 TPSKKKIDIMTTA---------SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPN-------GQRDFKGKFVARGPL 71 (85)
Q Consensus 8 t~s~k~~eI~~~~---------Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~-------~~~~fKvvvLdEAD~ 71 (85)
+++|||.-+..+. .....|+|+++.++. ..+.+.+++++........ ...++|++||||+|.
T Consensus 42 ~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~ 119 (237)
T d1sxjd2 42 PGTGKTSTILALTKELYGPDLMKSRILELNASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADS 119 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGG
T ss_pred CCCChHHHHHHHHHHHcCCcccccchhheeccccccc--hHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccc
Confidence 4567765444442 456799999998654 7888899998877654321 344799999999999
Q ss_pred CCHHHHhcc
Q psy2304 72 VGNPWHRAS 80 (85)
Q Consensus 72 LT~~AQ~a~ 80 (85)
|+.++|.+.
T Consensus 120 l~~~~~~~l 128 (237)
T d1sxjd2 120 MTADAQSAL 128 (237)
T ss_dssp SCHHHHHHH
T ss_pred cCHHHHHHH
Confidence 999998763
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.73 E-value=0.00026 Score=46.98 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=51.1
Q ss_pred CCCCCeEEEEEcc--------ccceeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhc
Q psy2304 8 TPSKKKIDIMTTA--------SNYHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRA 79 (85)
Q Consensus 8 t~s~k~~eI~~~~--------Sn~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a 79 (85)
.++|||.-+.++. +..++|+|++|.++ ...+++.++++....... ....+++++||+|.+..++|.+
T Consensus 54 ~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~--~~~~~~~~~~~~~~~~~~---~~~~~iilide~d~~~~~~~~~ 128 (231)
T d1iqpa2 54 PGVGKTTAALALARELFGENWRHNFLELNASDERG--INVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQA 128 (231)
T ss_dssp TTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH--HHTTHHHHHHHHHSCCGG---GCSCEEEEEETGGGSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccc--hhHHHHHHHHHHhhhhcc---CCCceEEeehhhhhcchhHHHH
Confidence 4678875554552 45789999998743 367788888887776543 2368999999999999999986
Q ss_pred c
Q psy2304 80 S 80 (85)
Q Consensus 80 ~ 80 (85)
.
T Consensus 129 l 129 (231)
T d1iqpa2 129 L 129 (231)
T ss_dssp H
T ss_pred H
Confidence 4
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.00094 Score=44.26 Aligned_cols=71 Identities=11% Similarity=-0.043 Sum_probs=48.8
Q ss_pred CCCCCeEEEEEcccc---ceeEeCCCCCCcccchhhHHHHHHHhhcCcCCC---------CCCCceeEEEEcCCCCCCHH
Q psy2304 8 TPSKKKIDIMTTASN---YHIEVNPNDAGIYDRVVVMELIKNVAQTNQLDP---------NGQRDFKGKFVARGPLVGNP 75 (85)
Q Consensus 8 t~s~k~~eI~~~~Sn---~hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~---------~~~~~fKvvvLdEAD~LT~~ 75 (85)
.++|||.-+.+++.. .++++|+++... ...++..++++..+..... ......+++++||+|.|+..
T Consensus 61 pG~GKTt~a~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~ 138 (253)
T d1sxja2 61 PGIGKTTAAHLVAQELGYDILEQNASDVRS--KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG 138 (253)
T ss_dssp TTSSHHHHHHHHHHHTTCEEEEECTTSCCC--HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT
T ss_pred CCCCHHHHHHHHHHHHHhhhhccccccchh--hHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccc
Confidence 456777665555432 367999999754 3677777777776654321 12336889999999999999
Q ss_pred HHhcc
Q psy2304 76 WHRAS 80 (85)
Q Consensus 76 AQ~a~ 80 (85)
+|.+.
T Consensus 139 ~~~~~ 143 (253)
T d1sxja2 139 DRGGV 143 (253)
T ss_dssp STTHH
T ss_pred hhhhh
Confidence 88753
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]
Probab=94.34 E-value=0.011 Score=34.75 Aligned_cols=18 Identities=0% Similarity=0.034 Sum_probs=15.4
Q ss_pred CceeEEEEcCCCCCCHHH
Q psy2304 59 RDFKGKFVARGPLVGNPW 76 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~A 76 (85)
.+|++||+||||.+++..
T Consensus 97 ~~~~lvIiDEaH~~~~~~ 114 (140)
T d1yksa1 97 VNWEVIIMDEAHFLDPAS 114 (140)
T ss_dssp CCCSEEEETTTTCCSHHH
T ss_pred cceeEEEEccccccChhh
Confidence 379999999999997664
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=92.28 E-value=0.035 Score=33.56 Aligned_cols=18 Identities=0% Similarity=-0.200 Sum_probs=15.5
Q ss_pred ceeEEEEcCCCCCCHHHH
Q psy2304 60 DFKGKFVARGPLVGNPWH 77 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~AQ 77 (85)
.|.+||+||||.+..+..
T Consensus 94 ~~~~vIiDE~H~~~~~~~ 111 (136)
T d1a1va1 94 AYDIIICDECHSTDATSI 111 (136)
T ss_dssp CCSEEEEETTTCCSHHHH
T ss_pred cCCEEEEecccccCHHHH
Confidence 589999999999987654
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]
Probab=87.25 E-value=0.024 Score=37.17 Aligned_cols=61 Identities=8% Similarity=-0.103 Sum_probs=37.4
Q ss_pred CCCCCeEEEEEccccc---eeEeCCCCCCcccchhhHHHHHHHhhcCcCCCCCCCceeEEEEcCCCCCCHHHHhcc
Q psy2304 8 TPSKKKIDIMTTASNY---HIEVNPNDAGIYDRVVVMELIKNVAQTNQLDPNGQRDFKGKFVARGPLVGNPWHRAS 80 (85)
Q Consensus 8 t~s~k~~eI~~~~Sn~---hlElnpSD~g~~Dr~VVq~~IK~~A~t~~~~~~~~~~fKvvvLdEAD~LT~~AQ~a~ 80 (85)
+++|||.-..+++..+ ..++|.++.+.. ......++. .+. ..++++|||+|.+++.+|.+.
T Consensus 44 pG~GKTtla~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~-----~~~i~~iDe~~~~~~~~~~~l 107 (239)
T d1ixsb2 44 PGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILAN-----SLE-----EGDILFIDEIHRLSRQAEEHL 107 (239)
T ss_dssp TTSCHHHHHHHHHHHHTCCEEEEETTTCCSH--HHHHHHHHT-----TCC-----TTCEEEEETGGGCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCeEeccCCccccc--hhhHHHHHh-----hcc-----CCCeeeeecccccchhHHHhh
Confidence 5678876665664433 467888876431 222222221 111 346899999999999998763
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
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class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]
Probab=86.18 E-value=0.19 Score=33.20 Aligned_cols=18 Identities=0% Similarity=0.021 Sum_probs=15.6
Q ss_pred CceeEEEEcCCCCCCHHH
Q psy2304 59 RDFKGKFVARGPLVGNPW 76 (85)
Q Consensus 59 ~~fKvvvLdEAD~LT~~A 76 (85)
+.+++||+||||.+...+
T Consensus 99 ~~~~~vViDE~H~~~~~~ 116 (305)
T d2bmfa2 99 PNYNLIIMDEAHFTDPAS 116 (305)
T ss_dssp CCCSEEEEESTTCCSHHH
T ss_pred cceeEEEeeeeeecchhh
Confidence 369999999999998765
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.76 E-value=0.18 Score=33.04 Aligned_cols=15 Identities=7% Similarity=-0.084 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCCCCH
Q psy2304 60 DFKGKFVARGPLVGN 74 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~ 74 (85)
..|.+||||||.|-.
T Consensus 145 ~l~~lVlDEaD~ll~ 159 (207)
T d1t6na_ 145 HIKHFILDECDKMLE 159 (207)
T ss_dssp TCCEEEEESHHHHHS
T ss_pred ccceeehhhhhhhhh
Confidence 689999999997754
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.30 E-value=0.28 Score=31.81 Aligned_cols=16 Identities=6% Similarity=-0.141 Sum_probs=13.6
Q ss_pred ceeEEEEcCCCCCCHH
Q psy2304 60 DFKGKFVARGPLVGNP 75 (85)
Q Consensus 60 ~fKvvvLdEAD~LT~~ 75 (85)
.|.+||+||||.+.++
T Consensus 169 ~~~lvIiDEaH~~~a~ 184 (206)
T d2fz4a1 169 RFMLLIFDEVHHLPAE 184 (206)
T ss_dssp TCSEEEEECSSCCCTT
T ss_pred cCCEEEEECCeeCCcH
Confidence 5899999999998643
