Psyllid ID: psy2359

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIVASK
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHcHHcccHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHcccHHHHHHHHHccccEccc
Coil and Loop (DISEMBL)
mhrplesdcelqllhfydsdpyhsnrtfwRSCSIMLGSVlsnafkdnvevqlhsfpspnvksgsfvydvqlsgvdnwkptSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNkykleqipsIVQQSIVASK
Flexible Loop (DISEMBL)
MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHsfpspnvksgSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKykleqipsivqqsivask
Low Complexity Region (SEG)
MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIVASK
Disordered region (IsUnstruct)
********CELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIV********
Disordered Region (DISOPRED)
MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI*********
Disordered Region (DISEMBL)
MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIVASK
Disordered Region (DISPRO)
****LESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIVASK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q9VUJ0	333	39S ribosomal protein L39	yes	N/A	0.956	0.393	0.560	5e-40
Q9JKF7	336	39S ribosomal protein L39	yes	N/A	0.963	0.392	0.406	5e-25
Q9NYK5	338	39S ribosomal protein L39	yes	N/A	0.963	0.390	0.406	8e-25
Q54J66	710	Probable threonine--tRNA	yes	N/A	0.883	0.170	0.345	3e-12
A5IJ45	640	Threonine--tRNA ligase OS	yes	N/A	0.846	0.181	0.330	5e-09
B1L7W6	640	Threonine--tRNA ligase OS	yes	N/A	0.846	0.181	0.323	1e-08
Q9WZJ9	640	Threonine--tRNA ligase OS	yes	N/A	0.846	0.181	0.323	2e-08
B9KAN7	640	Threonine--tRNA ligase OS	yes	N/A	0.846	0.181	0.315	8e-08
A6QNM8	724	Probable threonine--tRNA	no	N/A	0.788	0.149	0.338	5e-07
Q0V9S0	814	Probable threonine--tRNA	no	N/A	0.788	0.132	0.305	6e-07

>sp|Q9VUJ0|RM39_DROME 39S ribosomal protein L39, mitochondrial OS=Drosophila melanogaster GN=mRpL39 PE=1 SV=2

 Score =  162 bits (410), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           MHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ AFK    +QLHSFP PN+
Sbjct: 108 MHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRAFKPEANLQLHSFPGPNI 167

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           KSGSFV+D+ L    NW+P   E+R LSAEMVKLA + +  ERL + QDLA+ +F+ +KY
Sbjct: 168 KSGSFVHDIVLQ-TQNWEPGKEEMRALSAEMVKLAAQDLRIERLDVQQDLAQEMFKDSKY 226

Query: 121 KLEQIPSIVQQS 132
           K EQ+PSI QQ+
Sbjct: 227 KSEQLPSISQQT 238

Drosophila melanogaster (taxid: 7227)

>sp|Q9JKF7|RM39_MOUSE 39S ribosomal protein L39, mitochondrial OS=Mus musculus GN=Mrpl39 PE=2 SV=4

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 1/133 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           M++PL   CE++ L F D DP   N+ +WRSC++MLG V+  AFKD+  V L   P   V
Sbjct: 112 MYKPLTKSCEIKFLTFKDPDPKEVNKAYWRSCAMMLGCVIERAFKDDYVVSLVRAPEVPV 171

Query: 61  KSGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
            +G+F YDV L   +D W PT   LR  + +   L Y  +PFE L +   +A  +F+HNK
Sbjct: 172 IAGAFCYDVTLDKRLDEWMPTKENLRSFTKDAHALIYRDLPFETLDVDARVALEIFQHNK 231

Query: 120 YKLEQIPSIVQQS 132
           YK++ I     Q+
Sbjct: 232 YKVDFIEEKASQN 244

Mus musculus (taxid: 10090)

>sp|Q9NYK5|RM39_HUMAN 39S ribosomal protein L39, mitochondrial OS=Homo sapiens GN=MRPL39 PE=1 SV=3

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 1/133 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           M++PL   CE++ L F D DP   N+ +WRSC++M+G V+  AFKD   V L   P   V
Sbjct: 115 MYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPV 174

Query: 61  KSGSFVYDVQL-SGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
            SG+F YDV L S +D W PT   LR  + +   L Y+ +PFE L +   +A  +F+H+K
Sbjct: 175 ISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSK 234

Query: 120 YKLEQIPSIVQQS 132
           YK++ I     Q+
Sbjct: 235 YKVDFIEEKASQN 247

Homo sapiens (taxid: 9606)

>sp|Q54J66|SYTC1_DICDI Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium discoideum GN=thrS1 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 15/136 (11%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           + RPLE+DC LQL  F   D     +TFW S + +LG  +   +   + +       P  
Sbjct: 123 ISRPLEADCNLQLCKF---DSEEGKKTFWHSSAHILGQAMERIYGGQLCI------GPAT 173

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMV-KLAYEAVPFERLSISQDLAEALFEHNK 119
             G F YD+ +      K  SAE   L  E+  K+  E  PFERL++ +D+A  +F+ NK
Sbjct: 174 SEG-FYYDMAMGD----KIVSAEDYKLINEVAQKIVQEKQPFERLAVPRDIALTMFKFNK 228

Query: 120 YKLEQIPSIVQQSIVA 135
           YK E I  I Q+  V+
Sbjct: 229 YKTEIISKIPQEDTVS 244

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|A5IJ45|SYT_THEP1 Threonine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=thrS PE=3 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 14/130 (10%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSP 58
           + RP+E+DCEL+L+   D +       F+R     I+  +V+    K+NV++ +     P
Sbjct: 45  LKRPIENDCELRLVTLEDPEA----PEFYRHTMAHILAQAVMRIYGKENVKLGI----GP 96

Query: 59  NVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
            +++G F YD     + N K T  +L  +  EM K+  E +P ER  IS++ A  LF + 
Sbjct: 97  TIENG-FYYDFD---IKNGKLTEEDLPKIEQEMKKIIKENLPIERKEISKEEARKLFNNQ 152

Query: 119 KYKLEQIPSI 128
            YKLE I  I
Sbjct: 153 PYKLELIEEI 162

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|B1L7W6|SYT_THESQ Threonine--tRNA ligase OS=Thermotoga sp. (strain RQ2) GN=thrS PE=3 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 14/130 (10%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSP 58
           + RP+E+DCEL+L+   D +       F+R     I+  +V+    K+NV++ +     P
Sbjct: 45  LKRPIENDCELRLVTLEDPEA----PEFYRHTMAHILAQAVMRIYGKENVKLGI----GP 96

Query: 59  NVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
            +++G F YD     + N + T  +L  +  EM K+  E +P ER  IS++ A  LF + 
Sbjct: 97  TIENG-FYYDFD---IKNGRLTEEDLPKIEQEMKKIIKENLPIERKEISKEEARKLFNNQ 152

Query: 119 KYKLEQIPSI 128
            YKLE I  I
Sbjct: 153 PYKLELIEEI 162

Thermotoga sp. (strain RQ2) (taxid: 126740)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9WZJ9|SYT_THEMA Threonine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=thrS PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 14/130 (10%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSP 58
           + RP+E+DCEL+L+   D +       F+R     I+  +V+    K+NV++ +     P
Sbjct: 45  LKRPIENDCELRLVTLEDPEA----PEFYRHTMAHILAQAVMRLYGKENVKLGI----GP 96

Query: 59  NVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
            +++G F YD     + N + T  +L  +  EM K+  E +P ER  IS++ A  LF   
Sbjct: 97  TIENG-FYYDFD---IKNGRLTEEDLPKIEQEMKKIIKENLPIERKEISKEEARELFRDQ 152

Query: 119 KYKLEQIPSI 128
            YKLE I  I
Sbjct: 153 PYKLELIEEI 162

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|B9KAN7|SYT_THENN Threonine--tRNA ligase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=thrS PE=3 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 14/130 (10%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSP 58
           + RPLE DC ++ +   D +       F+R     I+  +V+    K+NV++ +     P
Sbjct: 45  LKRPLERDCRIRFVTLEDPEA----PEFYRHTMAHILAQAVMRLYGKENVKLGI----GP 96

Query: 59  NVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
            +++G F YD     + N K T  +L  +  EM K+  E +P ER  IS+D A+ +F+  
Sbjct: 97  TIENG-FYYDFD---IRNGKLTEEDLPRIEQEMKKIIKENLPIEREEISKDEAKEIFKDQ 152

Query: 119 KYKLEQIPSI 128
            YKLE I  I
Sbjct: 153 PYKLELIEEI 162

Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) (taxid: 309803)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|A6QNM8|SYTC2_BOVIN Probable threonine--tRNA ligase 2, cytoplasmic OS=Bos taurus GN=TARSL2 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           + RPLE D  ++LL F D +   +   +W S + +LG  L   +       L     P  
Sbjct: 206 LDRPLEGDATVELLTFEDEE---ARAVYWHSSAHVLGEALELHYGG-----LLCCSPPG- 256

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
             GSF YDV L   ++   +SAEL VL +    +  E  PFERL +S  +   LF++NK+
Sbjct: 257 -DGSFHYDVYL---EDRAVSSAELPVLESMCQAIIKEQQPFERLEVSTKVLLDLFKYNKF 312

Query: 121 K 121
           K
Sbjct: 313 K 313

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q0V9S0|SYTC2_XENTR Probable threonine--tRNA ligase 2, cytoplasmic OS=Xenopus tropicalis GN=tarsl2 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           + RPLE D  ++LL F   D   +   +W S + +LG  + N +   +         P +
Sbjct: 220 LDRPLEQDSNVELLKF---DSEEAQAVYWHSSAHILGETMENFYGGCLCY------GPPI 270

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           ++G F YD+ L G      +S E   L      +  E  PFERL +S+DL   +F++NK+
Sbjct: 271 ENG-FYYDMYLDGRG---VSSNEFPSLENMCKAIIKEKQPFERLEVSKDLLLEMFKYNKF 326

Query: 121 K 121
           K
Sbjct: 327 K 327

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
193652458	341	PREDICTED: 39S ribosomal protein L39, mi	0.970	0.390	0.619	1e-43
289741267	329	mitochondrial ribosomal protein L39 [Glo	0.956	0.398	0.583	2e-40
194751137	333	GF10636 [Drosophila ananassae] gi|190625	0.956	0.393	0.568	4e-39
195129623	332	GI13938 [Drosophila mojavensis] gi|19392	0.948	0.391	0.580	1e-38
195327660	333	GM24519 [Drosophila sechellia] gi|195590	0.956	0.393	0.560	2e-38
195378436	332	GJ13727 [Drosophila virilis] gi|19415514	0.956	0.394	0.553	2e-38
195018487	332	GH14833 [Drosophila grimshawi] gi|193898	0.956	0.394	0.553	3e-38
194871047	333	GG13700 [Drosophila erecta] gi|190654558	0.956	0.393	0.553	3e-38
24664387	333	mitochondrial ribosomal protein L39 [Dro	0.956	0.393	0.560	4e-38
17946007	310	RE50565p [Drosophila melanogaster]	0.956	0.422	0.560	6e-38

>gi|193652458|ref|XP_001949601.1| PREDICTED: 39S ribosomal protein L39, mitochondrial-like [Acyrthosiphon pisum]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 106/134 (79%), Gaps = 1/134 (0%)

Query: 1   MHRPLESDCELQLLHF-YDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPN 59
           MHRPLESDCEL  +H  Y  DPYH NR +WRSCS++LG+V+S AFK +++  LHSFPSPN
Sbjct: 109 MHRPLESDCELTFMHAQYLPDPYHFNRAYWRSCSLILGAVISKAFKTDIQPTLHSFPSPN 168

Query: 60  VKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
           VKSGSFVYDV+LS +  W PT  ELR+LSA MVK A ++  FERL++S++LA  +F+ NK
Sbjct: 169 VKSGSFVYDVELSNLPEWAPTENELRILSANMVKFAQKSYKFERLAVSEELALDIFQENK 228

Query: 120 YKLEQIPSIVQQSI 133
           +K EQ+P+I QQSI
Sbjct: 229 FKKEQVPNIAQQSI 242

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741267|gb|ADD19381.1| mitochondrial ribosomal protein L39 [Glossina morsitans morsitans]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 103/132 (78%), Gaps = 1/132 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           MHRPL++ C LQLLHF  SDP+  N+TFWRSCS MLG+ L NAFK+   +QLHSFP PN+
Sbjct: 105 MHRPLQASCTLQLLHFTVSDPHVVNKTFWRSCSFMLGAALQNAFKEEAHLQLHSFPGPNI 164

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           K+GSF++D+ L G  +W+PT +ELR LSAEM+KLA + + FERL ++Q+LA  +F+  +Y
Sbjct: 165 KTGSFIHDIVL-GSRDWQPTKSELRALSAEMLKLAAQDLKFERLEVNQELALEMFKDCRY 223

Query: 121 KLEQIPSIVQQS 132
           K EQ+PSI QQ+
Sbjct: 224 KKEQLPSISQQN 235

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751137|ref|XP_001957883.1| GF10636 [Drosophila ananassae] gi|190625165|gb|EDV40689.1| GF10636 [Drosophila ananassae]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           MHRPL+  C LQLLHF  S+P+  N+ FWR+CS MLG+ L+ AFK    +QLHSFP PN+
Sbjct: 108 MHRPLQESCTLQLLHFQVSEPHVVNKAFWRTCSFMLGAALNRAFKPEANLQLHSFPGPNI 167

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           KSGSFV+D+ L    NW+PT  E+R +SAEMVKLA E    ERL ++QD+A+ +F+ +KY
Sbjct: 168 KSGSFVHDIVLQ-TRNWQPTKEEMRTVSAEMVKLALEDHEIERLDVTQDIAQEIFKDSKY 226

Query: 121 KLEQIPSIVQQS 132
           K EQ+PSI QQ+
Sbjct: 227 KSEQLPSIAQQT 238

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129623|ref|XP_002009255.1| GI13938 [Drosophila mojavensis] gi|193920864|gb|EDW19731.1| GI13938 [Drosophila mojavensis]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 95/131 (72%), Gaps = 1/131 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           MHRPL+  C LQLL+F  SDP+  N+ FWR+CS MLG+ L   FK    +QLHSFP PN+
Sbjct: 107 MHRPLQESCTLQLLNFNVSDPHLVNKAFWRTCSFMLGAALQRVFKQEANLQLHSFPGPNI 166

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           KSGSFV+D+ L GV NW+PT AE+R +SAEMVKLA + +  ERL +  DLA  +F+  +Y
Sbjct: 167 KSGSFVHDIVL-GVQNWEPTKAEMRAISAEMVKLAAQDLCIERLEVDLDLATEMFKDLRY 225

Query: 121 KLEQIPSIVQQ 131
           K EQIPSI QQ
Sbjct: 226 KSEQIPSIAQQ 236

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195327660|ref|XP_002030536.1| GM24519 [Drosophila sechellia] gi|195590346|ref|XP_002084907.1| GD12590 [Drosophila simulans] gi|194119479|gb|EDW41522.1| GM24519 [Drosophila sechellia] gi|194196916|gb|EDX10492.1| GD12590 [Drosophila simulans]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           MHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ AFK    +QLHSFP PN+
Sbjct: 108 MHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRAFKPEANLQLHSFPGPNI 167

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           KSGSFV+D+ L    NW+P   E+R LSAEMVKLA + +  ERL + QDLA+ +F+ +KY
Sbjct: 168 KSGSFVHDIVLQ-TQNWEPAKEEMRALSAEMVKLAAQDLRIERLDVQQDLAQEMFKDSKY 226

Query: 121 KLEQIPSIVQQS 132
           K EQ+PSI QQ+
Sbjct: 227 KSEQLPSIAQQT 238

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195378436|ref|XP_002047990.1| GJ13727 [Drosophila virilis] gi|194155148|gb|EDW70332.1| GJ13727 [Drosophila virilis]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           MHRPL+  C LQLL+F  S+P+  N+ FWR+CS MLG+ L  AF+    +QLHSFP PN+
Sbjct: 107 MHRPLQESCTLQLLNFNISEPHVVNKAFWRTCSFMLGAALQRAFRQEANLQLHSFPGPNI 166

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           KSGSFV+D+ L GV NW PT AE+R +SAEMVKLA + +  ERL +  +LA+ +F+ ++Y
Sbjct: 167 KSGSFVHDIVL-GVQNWVPTKAEMRAISAEMVKLAAQDLRIERLEVDHELAKEMFKDSRY 225

Query: 121 KLEQIPSIVQQS 132
           K EQ+PSI QQ+
Sbjct: 226 KSEQLPSIAQQN 237

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195018487|ref|XP_001984790.1| GH14833 [Drosophila grimshawi] gi|193898272|gb|EDV97138.1| GH14833 [Drosophila grimshawi]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 100/132 (75%), Gaps = 1/132 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           +HRPL+  C LQLL+F  S+P+  N+ FWR+CS MLG+ L   FK+  ++QLHSFPSPN+
Sbjct: 107 VHRPLQESCTLQLLNFNVSEPHVVNKAFWRTCSFMLGAALQRVFKEEAKLQLHSFPSPNI 166

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           KSGSFV+D+ L G  NW+PT AE+R +SAEMVKLA + +  ERL + Q+LA+ +F+ + Y
Sbjct: 167 KSGSFVHDIVL-GAQNWQPTKAEMRAISAEMVKLAAQDLRIERLEVDQELAKEMFKESHY 225

Query: 121 KLEQIPSIVQQS 132
           K EQ+PSI QQ+
Sbjct: 226 KSEQLPSIAQQN 237

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194871047|ref|XP_001972775.1| GG13700 [Drosophila erecta] gi|190654558|gb|EDV51801.1| GG13700 [Drosophila erecta]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           MHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ AFK    +QLHSFP PN+
Sbjct: 108 MHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRAFKPEANLQLHSFPGPNI 167

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           KSGSFV+D+ L    NW+P   E+R +SAEMVKLA + +  ERL + QDLA+ +F+ +KY
Sbjct: 168 KSGSFVHDIVLQ-TQNWEPAKEEMRAISAEMVKLAAQDLRIERLDVQQDLAQEMFKDSKY 226

Query: 121 KLEQIPSIVQQS 132
           K EQ+PSI QQ+
Sbjct: 227 KSEQLPSIAQQT 238

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24664387|ref|NP_524075.2| mitochondrial ribosomal protein L39 [Drosophila melanogaster] gi|27923994|sp|Q9VUJ0.2|RM39_DROME RecName: Full=39S ribosomal protein L39, mitochondrial; Short=MRP-L39; AltName: Full=MRP-L5 gi|23093441|gb|AAF49686.2| mitochondrial ribosomal protein L39 [Drosophila melanogaster] gi|346716412|gb|AEO46465.1| RE54042p1 [Drosophila melanogaster]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           MHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ AFK    +QLHSFP PN+
Sbjct: 108 MHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRAFKPEANLQLHSFPGPNI 167

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           KSGSFV+D+ L    NW+P   E+R LSAEMVKLA + +  ERL + QDLA+ +F+ +KY
Sbjct: 168 KSGSFVHDIVLQ-TQNWEPGKEEMRALSAEMVKLAAQDLRIERLDVQQDLAQEMFKDSKY 226

Query: 121 KLEQIPSIVQQS 132
           K EQ+PSI QQ+
Sbjct: 227 KSEQLPSISQQT 238

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17946007|gb|AAL49047.1| RE50565p [Drosophila melanogaster]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           MHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ AFK    +QLHSFP PN+
Sbjct: 108 MHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRAFKPEANLQLHSFPGPNI 167

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
           KSGSFV+D+ L    NW+P   E+R LSAEMVKLA + +  ERL + QDLA+ +F+ +KY
Sbjct: 168 KSGSFVHDIVLQ-TQNWEPGKEEMRALSAEMVKLAAQDLRIERLDVQQDLAQEMFKDSKY 226

Query: 121 KLEQIPSIVQQS 132
           K EQ+PSI QQ+
Sbjct: 227 KSEQLPSISQQT 238

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0036462	333	mRpL39 "mitochondrial ribosoma	0.956	0.393	0.560	1.9e-37
UNIPROTKB|F1P8E4	335	MRPL39 "Uncharacterized protei	0.963	0.394	0.406	4.2e-24
MGI|MGI:1351620	336	Mrpl39 "mitochondrial ribosoma	0.963	0.392	0.406	5.3e-24
UNIPROTKB|Q9NYK5	338	MRPL39 "39S ribosomal protein	0.963	0.390	0.406	6.8e-24
UNIPROTKB|F1NDS2	348	MRPL39 "Uncharacterized protei	0.970	0.382	0.401	8.7e-24
UNIPROTKB|F1SHP6	337	LOC100521866 "Uncharacterized	0.963	0.391	0.398	1.4e-23
UNIPROTKB|I3LHX5	245	LOC100621532 "Uncharacterized	0.963	0.538	0.398	1.4e-23
UNIPROTKB|Q05B74	335	MRPL39 "Mitochondrial ribosoma	0.963	0.394	0.383	6.1e-23
ZFIN|ZDB-GENE-030131-6520	342	mrpl39 "mitochondrial ribosoma	0.963	0.385	0.398	7.8e-23
UNIPROTKB|C9JG87	297	MRPL39 "39S ribosomal protein	0.897	0.414	0.371	5.1e-19

FB|FBgn0036462 mRpL39 "mitochondrial ribosomal protein L39" [Drosophila melanogaster (taxid:7227)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 74/132 (56%), Positives = 98/132 (74%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
             MHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ AFK    +QLHSFP PN+
Sbjct:   108 MHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRAFKPEANLQLHSFPGPNI 167

Query:    61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
             KSGSFV+D+ L    NW+P   E+R LSAEMVKLA + +  ERL + QDLA+ +F+ +KY
Sbjct:   168 KSGSFVHDIVLQ-TQNWEPGKEEMRALSAEMVKLAAQDLRIERLDVQQDLAQEMFKDSKY 226

Query:   121 KLEQIPSIVQQS 132
             K EQ+PSI QQ+
Sbjct:   227 KSEQLPSISQQT 238

GO:0006435 "threonyl-tRNA aminoacylation" evidence=ISS

GO:0004829 "threonine-tRNA ligase activity" evidence=ISS;NAS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS;NAS

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1P8E4 MRPL39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 54/133 (40%), Positives = 77/133 (57%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
             M++PL   CE++ L F D DP   N+ +WRSC++M+G V+  AFKD   V L   P   V
Sbjct:   112 MYKPLTKSCEIEFLTFKDRDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVSLIRAPEVPV 171

Query:    61 KSGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
               G+F YDV L   +D W PT   LR L+ +   L Y+ +PFE L +   +A  +F+HNK
Sbjct:   172 ICGAFCYDVVLDKRLDEWMPTKENLRSLTKDARALIYKDLPFETLEVEAKVALEIFQHNK 231

Query:   120 YKLEQIPSIVQQS 132
             YK++ I     Q+
Sbjct:   232 YKMDFIEEKASQN 244

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1351620 Mrpl39 "mitochondrial ribosomal protein L39" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 54/133 (40%), Positives = 77/133 (57%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
             M++PL   CE++ L F D DP   N+ +WRSC++MLG V+  AFKD+  V L   P   V
Sbjct:   112 MYKPLTKSCEIKFLTFKDPDPKEVNKAYWRSCAMMLGCVIERAFKDDYVVSLVRAPEVPV 171

Query:    61 KSGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
              +G+F YDV L   +D W PT   LR  + +   L Y  +PFE L +   +A  +F+HNK
Sbjct:   172 IAGAFCYDVTLDKRLDEWMPTKENLRSFTKDAHALIYRDLPFETLDVDARVALEIFQHNK 231

Query:   120 YKLEQIPSIVQQS 132
             YK++ I     Q+
Sbjct:   232 YKVDFIEEKASQN 244

GO:0000002 "mitochondrial genome maintenance" evidence=TAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=ISA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q9NYK5 MRPL39 "39S ribosomal protein L39, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 54/133 (40%), Positives = 78/133 (58%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
             M++PL   CE++ L F D DP   N+ +WRSC++M+G V+  AFKD   V L   P   V
Sbjct:   115 MYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPV 174

Query:    61 KSGSFVYDVQL-SGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
              SG+F YDV L S +D W PT   LR  + +   L Y+ +PFE L +   +A  +F+H+K
Sbjct:   175 ISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSK 234

Query:   120 YKLEQIPSIVQQS 132
             YK++ I     Q+
Sbjct:   235 YKVDFIEEKASQN 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NDS2 MRPL39 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 55/137 (40%), Positives = 80/137 (58%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPS-PN 59
             M+RPL   CE+Q L F D DP   N+ +WRSC++++ +VL  AFKD   V L   P  P 
Sbjct:   109 MYRPLTKSCEIQFLTFKDEDPEEVNKAYWRSCAMIMANVLKRAFKDEYSVTLVKSPEVPE 168

Query:    60 VK--SGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFE 116
             +   SG+F YDV L   +++WKP     R L+ +  KL  + +PFE L +   +A  +F+
Sbjct:   169 IAVISGAFCYDVILDNRLNDWKPAKDNFRSLTRDANKLIDKDLPFETLHVEAKVAREMFQ 228

Query:   117 HNKYKLEQIPSIVQQSI 133
             HNKYK+E I     Q++
Sbjct:   229 HNKYKMELIEQKASQNM 245

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SHP6 LOC100521866 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/133 (39%), Positives = 76/133 (57%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
             M++PL   CE++ L F D DP   N+ +WRSC++M+G V+  AFKD   V L   P   V
Sbjct:   115 MYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVSLVRAPEVPV 174

Query:    61 KSGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
              +G+F YDV L   +D W PT   L   + +   L Y+ +PFE L +   +A  +F+HNK
Sbjct:   175 IAGAFCYDVVLDKRLDEWMPTKENLHSFTKDARALIYKDLPFETLEVEAKVALEIFQHNK 234

Query:   120 YKLEQIPSIVQQS 132
             YKL+ I     Q+
Sbjct:   235 YKLDFIEEKASQN 247

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LHX5 LOC100621532 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/133 (39%), Positives = 76/133 (57%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
             M++PL   CE++ L F D DP   N+ +WRSC++M+G V+  AFKD   V L   P   V
Sbjct:    23 MYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVSLVRAPEVPV 82

Query:    61 KSGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
              +G+F YDV L   +D W PT   L   + +   L Y+ +PFE L +   +A  +F+HNK
Sbjct:    83 IAGAFCYDVVLDKRLDEWMPTKENLHSFTKDARALIYKDLPFETLEVEAKVALEIFQHNK 142

Query:   120 YKLEQIPSIVQQS 132
             YKL+ I     Q+
Sbjct:   143 YKLDFIEEKASQN 155

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q05B74 MRPL39 "Mitochondrial ribosomal protein L39" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 51/133 (38%), Positives = 77/133 (57%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
             M++PL   CE++ L F D DP   N+ +WRSC++++G V+  AFK+   V L   P   V
Sbjct:   112 MYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMIMGCVIERAFKEEYVVHLVRAPEVPV 171

Query:    61 KSGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
              +G+F YDV L   +D W PT   LR  + +   L Y+ +PFE L +   +A  +F+HNK
Sbjct:   172 IAGAFCYDVVLDKRLDEWMPTKENLRSFTKDARALIYKDLPFETLEVEAKVALEIFQHNK 231

Query:   120 YKLEQIPSIVQQS 132
             YK++ I     Q+
Sbjct:   232 YKVDFIEEKASQN 244

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6520 mrpl39 "mitochondrial ribosomal protein L39" [Danio rerio (taxid:7955)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 53/133 (39%), Positives = 79/133 (59%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
             MH+PL   CEL LL F D+DP   N+ +WRSC+ +LG VL +AFKD   V+L   P   V
Sbjct:   105 MHKPLTRSCELTLLTFRDADPQTLNQAYWRSCAALLGLVLESAFKDQFSVELLKTPEVPV 164

Query:    61 KSGSFVYDVQLSGV-DNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
              +G+F  D+ L  + D+WKPT   LR L+ + +++    +P+E L +S  LA  +F  ++
Sbjct:   165 TAGAFCCDLLLDPLLDSWKPTEENLRSLTRDALQMISRDLPWEPLEVSASLALEIFSQSR 224

Query:   120 YKLEQIPSIVQQS 132
              K E++     QS
Sbjct:   225 CKQEEVEEAAAQS 237

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|C9JG87 MRPL39 "39S ribosomal protein L39, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 49/132 (37%), Positives = 73/132 (55%)

Query:     1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
             M++PL   CE++ L F D DP   N+ +WRSC++M+G V+  AFKD   V L    +P V
Sbjct:   115 MYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNL--VRAPEV 172

Query:    61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
                  V D +L   D W PT   LR  + +   L Y+ +PFE L +   +A  +F+H+KY
Sbjct:   173 P----VLDSKL---DEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKY 225

Query:   121 KLEQIPSIVQQS 132
             K++ I     Q+
Sbjct:   226 KVDFIEEKASQN 237

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VUJ0	RM39_DROME	No assigned EC number	0.5606	0.9562	0.3933	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
PLN02908	686	PLN02908, PLN02908, threonyl-tRNA synthetase	2e-12
PRK12305	575	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	1e-07
PRK00413	638	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	1e-05
PRK12444	639	PRK12444, PRK12444, threonyl-tRNA synthetase; Revi	8e-04
COG0441	589	COG0441, ThrS, Threonyl-tRNA synthetase [Translati	0.002
TIGR00418	563	TIGR00418, thrS, threonyl-tRNA synthetase	0.004

>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           M RPLE DC+L+L  F D +      TFW S + +LG  L   +      +L   P    
Sbjct: 98  MTRPLEGDCKLKLFKFDDDE---GRDTFWHSSAHILGEALELEYG----CKLCIGPCTTR 150

Query: 61  KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
             G F YD       +      + + + A   K   E  PFER+ ++++ A  +F  NK+
Sbjct: 151 GEG-FYYDAFYG---DRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKF 206

Query: 121 KLEQI 125
           K+E I
Sbjct: 207 KVEII 211

Length = 686

>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 58  PNVKSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFE 116
           P ++ G F YD      D  +P T  +L+ +  +M K+    +PFER  +S++ A   F 
Sbjct: 34  PPIEDG-FYYDF-----DVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREEFA 87

Query: 117 HNKYKLEQIPSIVQQSI 133
           +  YKLE I  I ++ I
Sbjct: 88  NEPYKLELIDDIPEEGI 104

Length = 575

>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 31/138 (22%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           +  P+E D  L+++   D +          S +     +L+ A K     +L+    P+ 
Sbjct: 47  LSTPIEEDASLEIITAKDEE---GLEIIRHSAA----HLLAQAVK-----RLY----PDA 90

Query: 61  KSG-------SFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAE 112
           K          F YD      D  +P T  +L  +  EM ++  E  P ER  +S++ A 
Sbjct: 91  KLTIGPVIENGFYYDF-----DRERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAI 145

Query: 113 ALFEH--NKYKLEQIPSI 128
            LF+     YK+E I  I
Sbjct: 146 ELFKDRGEPYKVELIEEI 163

Length = 638

>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 65  FVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFE--HNKYKL 122
           F YD+ L           +LR +  EM K+  E +  ER+ +S++ A  LF+  +++ KL
Sbjct: 106 FYYDMDLPS----SVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKL 161

Query: 123 EQIPSI 128
           E + +I
Sbjct: 162 ELLEAI 167

Length = 639

>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 16/104 (15%)

Query: 28  FWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKP-TSAELRV 86
              SC+ +L   +   + D           P ++ G F YD  +      +P T  +L  
Sbjct: 29  IRHSCAHVLAQAVKRLYPDVTIG-------PVIEEG-FYYDFDVK-----EPITPEDLLK 75

Query: 87  LSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQ 130
           +  EM ++A E +P ER  +S++ A A F    YK E I     
Sbjct: 76  IEKEMKEIAKENLPIEREVVSREEARAPFG--PYKAELIDCKGH 117

Length = 589

>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 39  VLSNAFKDN-VEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYE 97
           +L+ A K    +V+L   P   V+ G F YD +L        T  +L  +  +M ++A +
Sbjct: 7   LLAEALKQLYPDVKLAIGPV--VEDG-FYYDFELDR----SFTQEDLEKIEKDMKEIAKK 59

Query: 98  AVPFERLSISQDLAEALFEHNK-YKLEQIPSI 128
             P  +LS+S + A   F+  + YKLE +  I
Sbjct: 60  NYPVAKLSVSLEEALEAFKVLEPYKLELLDEI 91

This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether. [Protein synthesis, tRNA aminoacylation]. Length = 563

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
PLN02908	686	threonyl-tRNA synthetase	99.94
PRK12444	639	threonyl-tRNA synthetase; Reviewed	99.93
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	99.92
PLN02837	614	threonine-tRNA ligase	99.82
PRK12305	575	thrS threonyl-tRNA synthetase; Reviewed	99.82
COG0441	589	ThrS Threonyl-tRNA synthetase [Translation, riboso	99.75
TIGR00418	563	thrS threonyl-tRNA synthetase. This model represen	99.66
PRK01584	594	alanyl-tRNA synthetase; Provisional	99.36
KOG1637|consensus	560		99.25
TIGR00344	851	alaS alanine--tRNA ligase. The model describes ala	99.16
PRK00252	865	alaS alanyl-tRNA synthetase; Reviewed	99.12
PLN02900	936	alanyl-tRNA synthetase	99.08
TIGR03683	902	A-tRNA_syn_arch alanyl-tRNA synthetase. This famil	98.96
PRK13902	900	alaS alanyl-tRNA synthetase; Provisional	98.96
COG0013	879	AlaS Alanyl-tRNA synthetase [Translation, ribosoma	98.69
PLN02961	223	alanine-tRNA ligase	98.65
COG2872	241	Predicted metal-dependent hydrolases related to al	98.52
KOG0188|consensus	895		98.24
KOG2105|consensus	415		96.19
PF10752	84	DUF2533: Protein of unknown function (DUF2533) ; I	90.62
COG1854	161	LuxS LuxS protein involved in autoinducer AI2 synt	80.91

>PLN02908 threonyl-tRNA synthetase

Probab=99.94  E-value=7.7e-27  Score=201.71  Aligned_cols=118  Identities=31%  Similarity=0.580  Sum_probs=107.8

Q ss_pred             CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCccc-CCcEEEEEecCCCCCCCC
Q psy2359           1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVK-SGSFVYDVQLSGVDNWKP   79 (137)
Q Consensus         1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~-~~gfy~d~~~~~~~~~~i   79 (137)
                      |++|++.||+|+||++++++|   +++||||++|||++|++++|+  +++    +++|+++ ++|||||+.+++   .++
T Consensus        98 L~~~l~~d~~le~l~~~~~eg---~~~y~hS~ahlL~~A~~~~~~--~~l----~ig~~i~~~~Gfy~d~~~~~---~~~  165 (686)
T PLN02908         98 MTRPLEGDCKLKLFKFDDDEG---RDTFWHSSAHILGEALELEYG--CKL----CIGPCTTRGEGFYYDAFYGD---RTL  165 (686)
T ss_pred             cCccccCCCeeEEeccccHHH---HHHHHHHHHHHHHHHHHHHhC--CeE----EecCccccCCcEEEEeecCC---CCC
Confidence            689999999999999999999   999999999999999999994  455    6899994 168999998652   479


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhcChhhhhccccccc
Q psy2359          80 TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQ  130 (137)
Q Consensus        80 t~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~~~~k~~ll~~~~~  130 (137)
                      |++|+++|+++|++||++++||++..|++++|+++|+.++||++||+.++.
T Consensus       166 t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~  216 (686)
T PLN02908        166 NEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPE  216 (686)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCC
Confidence            999999999999999999999999999999999999999999999988763

>PRK12444 threonyl-tRNA synthetase; Reviewed

Probab=99.93  E-value=7.5e-26  Score=194.23  Aligned_cols=117  Identities=26%  Similarity=0.446  Sum_probs=108.3

Q ss_pred             CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359           1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT   80 (137)
Q Consensus         1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it   80 (137)
                      |++|+..||+|+||++++++|   .++||||++|||++|++++||+ ..+    .+++++ ++||||||..+    .++|
T Consensus        51 L~~~i~~d~~i~fv~~~~~~g---~~iy~hS~~hlL~~A~~~~~~~-~~~----~i~~~~-~~g~y~d~~~~----~~it  117 (639)
T PRK12444         51 LRRNLEEDAEVEIITIDSNEG---VEIARHSAAHILAQAVKRLYGD-VNL----GVGPVI-ENGFYYDMDLP----SSVN  117 (639)
T ss_pred             cCcccCCCCeEEEecCCChHH---HHHHHHHHHHHHHHHHHHHcCC-cEE----EeCCcC-CCeEEEEEeCC----CCCC
Confidence            689999999999999999999   9999999999999999999998 555    578998 56899999876    5799


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhccccccc
Q psy2359          81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPSIVQ  130 (137)
Q Consensus        81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll~~~~~  130 (137)
                      ++++.+|+++|+++|++|+||++..++++||+++|++  +.+|.+|++..+.
T Consensus       118 ~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~  169 (639)
T PRK12444        118 VEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPS  169 (639)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCC
Confidence            9999999999999999999999999999999999997  8899999987654

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.92  E-value=1.8e-24  Score=185.45  Aligned_cols=118  Identities=25%  Similarity=0.420  Sum_probs=108.5

Q ss_pred             CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359           1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT   80 (137)
Q Consensus         1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it   80 (137)
                      |++++..||+|+|+++++++|   +++||||++|||++|++++||+ .++    .+++++ ++||||||..+    .++|
T Consensus        47 L~~~l~~d~~Vefi~~~~~~g---~~~y~hS~~hll~~A~~~~~~~-~~~----~~~~~~-~~g~y~d~~~~----~~lt  113 (638)
T PRK00413         47 LSTPIEEDASLEIITAKDEEG---LEIIRHSAAHLLAQAVKRLYPD-AKL----TIGPVI-ENGFYYDFDRE----RPFT  113 (638)
T ss_pred             CCccccCCCceeeeeccchhh---HHHHhhhHHHHHHHHHHHHcCC-ceE----EECCcc-CCeEEEEEeCC----CCCC
Confidence            689999999999999999999   9999999999999999999997 666    578888 46899999876    5799


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhcccccccc
Q psy2359          81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPSIVQQ  131 (137)
Q Consensus        81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll~~~~~~  131 (137)
                      ++++.+|+++|+++|++|+||++..+++++|.++|++  +.+|++|+++++.+
T Consensus       114 ~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~  166 (638)
T PRK00413        114 PEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPED  166 (638)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCC
Confidence            9999999999999999999999999999999999998  88999999887543

>PLN02837 threonine-tRNA ligase

Probab=99.82  E-value=1e-19  Score=155.88  Aligned_cols=108  Identities=21%  Similarity=0.340  Sum_probs=97.4

Q ss_pred             CceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHH
Q psy2359           8 DCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVL   87 (137)
Q Consensus         8 d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~I   87 (137)
                      ..++++++.++++|   +.++|||++|||++|++++||+ .++    .++++++ +||||||..+     ++|++|+.+|
T Consensus        29 ~~~~~~~~~~~~~~---~~~~~HSa~HLL~~Av~~l~~~-~~~----~ig~~~~-~g~y~D~~~~-----~lt~edl~~I   94 (614)
T PLN02837         29 PERVVLPTNESSEK---LLKIRHTCAHVMAMAVQKLFPD-AKV----TIGPWIE-NGFYYDFDME-----PLTDKDLKRI   94 (614)
T ss_pred             CceEEEEeccChhh---HHHHHHHHHHHHHHHHHHHcCC-cEE----EECCccC-CCEEEEecCC-----CCCHHHHHHH
Confidence            46899999999999   9999999999999999999998 666    5788884 6799999753     7999999999


Q ss_pred             HHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhcccccc
Q psy2359          88 SAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPSIV  129 (137)
Q Consensus        88 e~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll~~~~  129 (137)
                      |++|+++|++|+||++..++++||.++|.+  +.||.+|++..+
T Consensus        95 Ek~m~~iI~~n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~  138 (614)
T PLN02837         95 KKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEILEGIK  138 (614)
T ss_pred             HHHHHHHHHcCCCEEEEEecHHHHHHHHHHcCCchhHHHhccCC
Confidence            999999999999999999999999999986  788999887643

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.82  E-value=9e-20  Score=154.97  Aligned_cols=101  Identities=26%  Similarity=0.402  Sum_probs=90.9

Q ss_pred             CCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2359          17 YDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAY   96 (137)
Q Consensus        17 ~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~   96 (137)
                      ++++|   .++||||++|||++|++++||+ .++    .+++++ .+||||||..+    .++|++++.+|+++|+++|+
T Consensus         1 ~~~~g---~~~~~hS~~hlL~~A~~~~~~~-~~~----~~~~~~-~~g~~~d~~~~----~~it~e~l~~Ie~~m~~lI~   67 (575)
T PRK12305          1 DSPDG---LEVIRHSAAHVLAQAVQELFPD-AKL----GIGPPI-EDGFYYDFDVP----EPFTPEDLKKIEKKMKKIIK   67 (575)
T ss_pred             CCHHH---HHHHHHHHHHHHHHHHHHHcCC-ceE----EeCCCc-CCeEEEEeeCC----CCCCHHHHHHHHHHHHHHHh
Confidence            35677   9999999999999999999997 555    578888 46799999876    47999999999999999999


Q ss_pred             cCCCeEEEEeCHHHHHHHhhcChhhhhccccccc
Q psy2359          97 EAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQ  130 (137)
Q Consensus        97 ~~~pi~~~~v~~eeA~~~f~~~~~k~~ll~~~~~  130 (137)
                      +|+||++..+++++|.++|+.+.||.+|++..+.
T Consensus        68 ~~~pi~~~~v~~eeA~~~f~~~~~k~~l~~~~~~  101 (575)
T PRK12305         68 RGLPFEREEVSREEAREEFANEPYKLELIDDIPE  101 (575)
T ss_pred             cCCCEEEEEecHHHHHHhCCcChhHHHhhhhcCC
Confidence            9999999999999999999999999999987654

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=7.4e-18  Score=143.07  Aligned_cols=99  Identities=26%  Similarity=0.365  Sum_probs=89.0

Q ss_pred             EeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q psy2359          13 LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMV   92 (137)
Q Consensus        13 ~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~   92 (137)
                      +++.++ +|   ..+.|||++|||+.|++++||+ .      .+|+.++ +||||||+.+    .++|++|+.+||++|+
T Consensus        18 ~~~~~~-~~---~~~~rhs~ah~l~~av~~l~p~-~------~~gp~ie-~gfyyd~~~~----~~~~~~dl~~ie~~m~   81 (589)
T COG0441          18 ITAEDE-EG---LEIIRHSCAHVLAQAVKRLYPD-V------TIGPVIE-EGFYYDFDVK----EPITPEDLLKIEKEMK   81 (589)
T ss_pred             cCccCc-cc---hhhhhhHHHHHHHHHHHHhCCC-c------cccCccc-ceeEEeeccC----CCCCHHHHHHHHHHHH
Confidence            344444 78   9999999999999999999998 3      5688885 5799999987    4699999999999999


Q ss_pred             HHHHcCCCeEEEEeCHHHHHHHhhcChhhhhcccccc
Q psy2359          93 KLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIV  129 (137)
Q Consensus        93 ~iI~~~~pi~~~~v~~eeA~~~f~~~~~k~~ll~~~~  129 (137)
                      +++++++||++..+++++|++.|+  .||+++|+..+
T Consensus        82 ~i~~~~~~~~~~~~~~e~a~~~f~--~yK~~~i~~~~  116 (589)
T COG0441          82 EIAKENLPIEREVVSREEARAPFG--PYKAELIDCKG  116 (589)
T ss_pred             HHHHhcCceEEEEecHHHHHHHhh--hhHHHHHhcCC
Confidence            999999999999999999999999  89999999876

>TIGR00418 thrS threonyl-tRNA synthetase

Probab=99.66  E-value=3.1e-16  Score=133.06  Aligned_cols=90  Identities=29%  Similarity=0.441  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCH
Q psy2359          29 WRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQ  108 (137)
Q Consensus        29 ~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~  108 (137)
                      |||++|||.+|++++||+ ..+    .+++++ ++||||||..+    .++|++++.+|+++|+++|++|+||++..+++
T Consensus         1 ~HS~~hLl~~Al~~~~~~-~~~----~~~~~i-~~g~~~df~~~----~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~   70 (563)
T TIGR00418         1 RHSIAHLLAEALKQLYPD-VKL----AIGPVV-EDGFYYDFELD----RSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSL   70 (563)
T ss_pred             CChHHHHHHHHHHHHcCC-cEE----EEcCCc-CCCceecccCC----CCCCHHHHHHHHHHHHHHHhcCCCEEEEEECH
Confidence            799999999999999998 555    578899 45799999865    57999999999999999999999999999999


Q ss_pred             HHHHHHhh-cChhhhhccccc
Q psy2359         109 DLAEALFE-HNKYKLEQIPSI  128 (137)
Q Consensus       109 eeA~~~f~-~~~~k~~ll~~~  128 (137)
                      ++|.++|. .++||.+|++++
T Consensus        71 eeA~~~f~~~~~~k~~Ll~~~   91 (563)
T TIGR00418        71 EEALEAFKVLEPYKLELLDEI   91 (563)
T ss_pred             HHHHHHHhccChhHHHHHhcC
Confidence            99999998 588999999876

This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..

>PRK01584 alanyl-tRNA synthetase; Provisional

Probab=99.36  E-value=4.4e-12  Score=108.17  Aligned_cols=81  Identities=14%  Similarity=0.108  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      .-+.+||++|||.+|++++||. ...    ..|..+..++||+||..+    .++|++++++||++|+++|++|+||+..
T Consensus       452 ~~~r~HTAtHLL~~ALr~vlG~-~v~----q~Gs~v~~d~~r~DF~~~----~~it~edL~~IE~~vNeiI~~n~pV~~~  522 (594)
T PRK01584        452 ETTKLHTATHLLHKALRLVLGD-HVR----QKGSNITAERLRFDFSHP----EKMTDDEIKKVEDIVNLQIKNDLSVKKE  522 (594)
T ss_pred             cHHHHHHHHHHHHHHHHHHcCc-cce----eecCCcCCCcEEEEEeCC----CCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            5678999999999999999987 322    245555567899999876    5899999999999999999999999999


Q ss_pred             EeCHHHHHHH
Q psy2359         105 SISQDLAEAL  114 (137)
Q Consensus       105 ~v~~eeA~~~  114 (137)
                      .+++++|.++
T Consensus       523 ~~s~eEA~~~  532 (594)
T PRK01584        523 VMSLEEAREK  532 (594)
T ss_pred             EcCHHHHHhc
Confidence            9999999984

>KOG1637|consensus

Probab=99.25  E-value=6.5e-13  Score=109.24  Aligned_cols=72  Identities=33%  Similarity=0.711  Sum_probs=65.2

Q ss_pred             CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359           1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT   80 (137)
Q Consensus         1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it   80 (137)
                      |++|++.|| +++++|++++|   ..+||||++|+|+.|+.+.|++  .+    +.|++++ +|||||+ ++     .++
T Consensus        46 l~rp~e~~~-lell~f~~~~~---k~vfwhssahvlg~a~e~~~g~--~l----c~Gpp~~-~gf~yd~-~~-----~i~  108 (560)
T KOG1637|consen   46 LDRPLEGDC-LELLKFDDDEG---KDVFWHSSAHVLGEALEQEYGA--HL----CIGPPIE-EGFYYDM-LD-----EIS  108 (560)
T ss_pred             cCCcchhhH-HHHccCCCccc---ceeeeehhhhHhhHHHHHhcCe--eE----eeCCCCc-Cceehhh-hc-----ccc
Confidence            689999999 99999999999   8899999999999999999986  33    8999995 5799999 55     499


Q ss_pred             HHHHHHHHH
Q psy2359          81 SAELRVLSA   89 (137)
Q Consensus        81 ~edl~~Ie~   89 (137)
                      .+|+..||.
T Consensus       109 ~~d~~~~e~  117 (560)
T KOG1637|consen  109 SNDFPSIEA  117 (560)
T ss_pred             ccccccccc
Confidence            999999988

>TIGR00344 alaS alanine--tRNA ligase

Probab=99.16  E-value=2.7e-10  Score=101.07  Aligned_cols=83  Identities=16%  Similarity=0.109  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      ..+-+||++|||.+|++++|+..+.     ..|..+..+++|+||..+    .++|++++++||++||++|++|+||+..
T Consensus       555 ~~m~~HTAtHLL~aAL~~vlg~~v~-----q~Gs~v~~d~~r~Df~~~----~~lt~eel~~IE~~vNelI~~n~pV~~~  625 (851)
T TIGR00344       555 RIMRNHSATHLLHAALQKVLGNHVW-----QAGSLVSVKKLRFDFSHY----RALTREELEKIEDLVNEQILANIPIKVI  625 (851)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceE-----eccCcccCCcEEEEecCC----CCCCHHHHHHHHHHHHHHHHhCCceEEE
Confidence            4578999999999999999975221     134445456899999865    4899999999999999999999999999


Q ss_pred             EeCHHHHHHHhh
Q psy2359         105 SISQDLAEALFE  116 (137)
Q Consensus       105 ~v~~eeA~~~f~  116 (137)
                      .+++++|.+++.
T Consensus       626 ~~~~eeA~~~~~  637 (851)
T TIGR00344       626 FMDLDEAKAKGA  637 (851)
T ss_pred             EeCHHHHHhcch
Confidence            999999998764

The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).

>PRK00252 alaS alanyl-tRNA synthetase; Reviewed

Probab=99.12  E-value=4.7e-10  Score=99.78  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      ..+-+||++|||.+|++++|+..+.     ..|..+..+++++||..+    .++|++++.+||++|+++|.+|+||+..
T Consensus       548 ~~m~~HTa~HLL~~al~~~lg~~v~-----q~Gs~~~~~~~r~Df~~~----~~lt~eel~~IE~~vN~lI~~n~pV~~~  618 (865)
T PRK00252        548 AIARNHSATHLLHAALREVLGEHVT-----QAGSLVAPDRLRFDFSHF----EALTPEELRKIEDLVNEKIRENLPVETE  618 (865)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhheE-----eccCcccCCeEEEEeecC----CCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            5688999999999999999985221     134444466899999875    5899999999999999999999999999


Q ss_pred             EeCHHHHHHH
Q psy2359         105 SISQDLAEAL  114 (137)
Q Consensus       105 ~v~~eeA~~~  114 (137)
                      .+++++|.+.
T Consensus       619 ~~~~~eA~~~  628 (865)
T PRK00252        619 EMSIEEAKKM  628 (865)
T ss_pred             EeCHHHHHhC
Confidence            9999999873

>PLN02900 alanyl-tRNA synthetase

Probab=99.08  E-value=1e-09  Score=98.14  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      ..+-+||++|||.+|++++|+..+.     ..|..+..+++++||..+    .++|++++.+||++||++|.+|+||+..
T Consensus       593 ~~m~~HTAtHLL~aALr~vlG~~v~-----q~Gs~v~~d~~r~Df~~~----~~lt~eel~~IE~~vNe~I~~n~pV~~~  663 (936)
T PLN02900        593 RIAPNHTATHLLNSALKEVLGDHVD-----QKGSLVAFEKLRFDFSHG----KPMTPEELREVESLVNEWIGDALPVEAK  663 (936)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcEE-----eccccccCCeEEEEeeCC----CCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            5678999999999999999986221     134445566899999876    5899999999999999999999999999


Q ss_pred             EeCHHHHHHH
Q psy2359         105 SISQDLAEAL  114 (137)
Q Consensus       105 ~v~~eeA~~~  114 (137)
                      .+++++|.++
T Consensus       664 ~~~~eEA~~~  673 (936)
T PLN02900        664 EMPLADAKRI  673 (936)
T ss_pred             EcCHHHHhhc
Confidence            9999999983

>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase

Probab=98.96  E-value=6.5e-09  Score=92.80  Aligned_cols=83  Identities=10%  Similarity=0.082  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      ..+-+||++|||.+|++++++..  ++   ..|..+..+.+++||...    ..+|++++.+||+.+|++|.+|+||+..
T Consensus       592 ~~m~~HTAtHLL~~alr~vlG~~--v~---q~Gs~v~~d~~r~Df~~~----~~lt~eel~~IE~~vN~~I~~n~pV~~~  662 (902)
T TIGR03683       592 RLMRHHTATHVLLAAARRVLGRH--VW---QAGAQKDTDKARLDITHY----KRISEEEIKEIERLANRIVMENRPVSVK  662 (902)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCc--ee---ecCccccCCcEEEEEeCC----CCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            56789999999999999999852  21   134445456799999754    4799999999999999999999999999


Q ss_pred             EeCHHHHHHHhh
Q psy2359         105 SISQDLAEALFE  116 (137)
Q Consensus       105 ~v~~eeA~~~f~  116 (137)
                      .+++++|.+.+.
T Consensus       663 ~~~~~eA~~~~~  674 (902)
T TIGR03683       663 WMDRNEAEQKYG  674 (902)
T ss_pred             EeCHHHHHhcCc
Confidence            999999987643

This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.

>PRK13902 alaS alanyl-tRNA synthetase; Provisional

Probab=98.96  E-value=6.5e-09  Score=92.78  Aligned_cols=82  Identities=11%  Similarity=0.076  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      ..+-+||++|||.+|++++|+. . ++   ..|..+..+.+++||...    ..+|++++.+||+.+|++|.+|+||+..
T Consensus       588 ~~mr~HTAtHLL~~al~~vlG~-~-v~---q~Gs~v~~d~~r~Df~~~----~~lt~eel~~IE~~vN~~I~~n~pV~~~  658 (900)
T PRK13902        588 RLMRHHTATHIILAAARKVLGD-H-VW---QAGAQKTVDKARLDITHY----KRITREEVKEIERLANEIVMENRPVKVE  658 (900)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-c-ee---ecCccccCCCEEEEEeCC----CCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            4566799999999999999985 2 21   134444456799999764    4899999999999999999999999999


Q ss_pred             EeCHHHHHHHh
Q psy2359         105 SISQDLAEALF  115 (137)
Q Consensus       105 ~v~~eeA~~~f  115 (137)
                      .+++++|.+.+
T Consensus       659 ~~~~~eA~~~~  669 (900)
T PRK13902        659 WMDRNEAEQKY  669 (900)
T ss_pred             ecCHHHHHhcc
Confidence            99999998865

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=1.1e-07  Score=84.28  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEE
Q psy2359          26 RTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLS  105 (137)
Q Consensus        26 ~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~  105 (137)
                      -+-.||++|||-+|++++.+. . |+  + -|.-+..+..++||.-.    ..+|.++|++||..+|++|.+|+|++...
T Consensus       563 ~~~nHTATHLLh~ALr~VLG~-h-V~--Q-aGSlv~~~~lRfDfsH~----~~it~Eel~~IE~~vNe~I~~n~~V~~~~  633 (879)
T COG0013         563 LMRNHTATHLLHAALRKVLGD-H-VW--Q-AGSLVDPEKLRFDFSHY----KALTAEELKEIERLVNEIIRENLPVKTEE  633 (879)
T ss_pred             HHhhChHHHHHHHHHHHHhCc-c-ce--e-cCcccCCCeeEEeecCC----CCCCHHHHHHHHHHHHHHHHcCCceeEEE
Confidence            355799999999999999987 2 21  1 24444456678888654    68999999999999999999999999999


Q ss_pred             eCHHHHHHH
Q psy2359         106 ISQDLAEAL  114 (137)
Q Consensus       106 v~~eeA~~~  114 (137)
                      +++++|.++
T Consensus       634 m~~~eAk~~  642 (879)
T COG0013         634 MDLDEAKAK  642 (879)
T ss_pred             ccHHHHHHh
Confidence            999998775

>PLN02961 alanine-tRNA ligase

Probab=98.65  E-value=1.7e-07  Score=71.59  Aligned_cols=78  Identities=17%  Similarity=0.075  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHHHHHHH-cCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHH----HHHHHHHHHHHHHcCC
Q psy2359          25 NRTFWRSCSIMLGSVLSNA-FKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAE----LRVLSAEMVKLAYEAV   99 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~-~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~ed----l~~Ie~~m~~iI~~~~   99 (137)
                      ..+-.||+.|||.+|++++ ++. ...    ..+... .++-|+++.      ..++.++    +.+||+++|++|++++
T Consensus        81 ~~m~~HTa~HLL~~al~~~~~~~-~~~----~~g~~~-~~~~~v~~~------~~i~~~~~~~~~~~iE~~~N~~I~~~~  148 (223)
T PLN02961         81 LHSRLHSAGHLLDVCMARVGLGP-LEP----GKGYHF-PDGPFVEYK------GKIPQGELDSKQDELEAEANELIAEGG  148 (223)
T ss_pred             hhhccCcHHHHHHHHHHHcCCCc-ccc----cccccc-CCccceeec------ccCCHHHHHhHHHHHHHHHHHHHHcCC
Confidence            5577899999999999997 653 111    123333 345677764      2455444    5799999999999999


Q ss_pred             CeEEEEeCHHHHHHH
Q psy2359         100 PFERLSISQDLAEAL  114 (137)
Q Consensus       100 pi~~~~v~~eeA~~~  114 (137)
                      ||+...+++++|.++
T Consensus       149 ~V~~~~~~~~ea~~~  163 (223)
T PLN02961        149 KVSAAVLPYDEAAEL  163 (223)
T ss_pred             ceeEEEeCHHHHHHh
Confidence            999999999999886

>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]

Probab=98.52  E-value=2.5e-07  Score=71.46  Aligned_cols=80  Identities=18%  Similarity=0.104  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      ..+-+||+.|||++++++.|+..       +.|..+....-++||+.+      .+++++..+++..+++|++|+|+...
T Consensus        94 ~~mr~HTa~Hlls~~~~~~~~~~-------~~g~~i~~d~~~iD~~~e------~~~~~~~~v~~~~ne~v~~~~~v~~~  160 (241)
T COG2872          94 RHMRMHTALHLLSAVLYKVYGAL-------TTGFEIGEDYARIDFDGE------DTEDEIEEVEALANELVKENLPVIIY  160 (241)
T ss_pred             HHHhhhHHHHHHHHHhhccccce-------eecceecccccccccccc------cchhhHHHHHHHHHHHHHcCCeeeee
Confidence            45678999999999999999741       345555455566777644      28999999999999999999999999


Q ss_pred             EeCHHHHHHHhhc
Q psy2359         105 SISQDLAEALFEH  117 (137)
Q Consensus       105 ~v~~eeA~~~f~~  117 (137)
                      .++++||.+++.-
T Consensus       161 ~i~~EE~~~~p~~  173 (241)
T COG2872         161 FIPREEAEKLPGL  173 (241)
T ss_pred             ecCHHHHhhCcCh
Confidence            9999999998765

>KOG0188|consensus

Probab=98.24  E-value=4.1e-06  Score=72.84  Aligned_cols=78  Identities=12%  Similarity=0.149  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEe
Q psy2359          27 TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSI  106 (137)
Q Consensus        27 ~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~v  106 (137)
                      +-.||++|||..|+++++++ ..-     .|..+..+.+.+||...    ..+|.++++++|..|++.|.++.|++...+
T Consensus       568 m~nHTaTHlLN~aLr~~l~~-t~Q-----kGSlV~pdklRfDf~~k----~~lt~eql~~vE~~~ne~I~~~~~V~~~e~  637 (895)
T KOG0188|consen  568 MRNHTATHLLNFALRQVLKG-TDQ-----KGSLVAPDKLRFDFSTK----GALTKEQLKKVEDKINEFIQKNAPVYAKEL  637 (895)
T ss_pred             hhcchHHHHHHHHHHHhccc-ccc-----cccccChhHeeeecccC----CCCCHHHHHHHHHHHHHHHhcCCceEEEec
Confidence            55799999999999999965 322     35555566788888765    469999999999999999999999999999


Q ss_pred             CHHHHHHH
Q psy2359         107 SQDLAEAL  114 (137)
Q Consensus       107 ~~eeA~~~  114 (137)
                      +..+|.++
T Consensus       638 ~l~~ak~i  645 (895)
T KOG0188|consen  638 PLAEAKKI  645 (895)
T ss_pred             CHHHHhcC
Confidence            99999774

>KOG2105|consensus

Probab=96.19  E-value=0.019  Score=45.92  Aligned_cols=92  Identities=14%  Similarity=0.165  Sum_probs=65.9

Q ss_pred             CCccCCCceEEE-eecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359           2 HRPLESDCELQL-LHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT   80 (137)
Q Consensus         2 ~~~l~~d~~ie~-l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it   80 (137)
                      |.||+....|+. |++.-.    --.+-+||..||+.+.+..+|.-.       +.+-++  |||.--+.++   ..++|
T Consensus        87 ~~~iePGt~V~V~VD~qkR----~D~MQQHsGQHLitAvad~~fKlk-------TtSWel--G~~~sa~e~~---~~~mT  150 (415)
T KOG2105|consen   87 NDYIEPGTTVEVAVDEQKR----MDYMQQHSGQHLITAVADHLFKLK-------TTSWEL--GRFRSAIELD---TPSMT  150 (415)
T ss_pred             CCCCCCCCeEEEEecHHHH----hHHHHHhcchhHHHHHHHhhhccc-------eeeeec--cceeeccccC---CCCcc
Confidence            456766666553 222211    145779999999999999999742       223343  5788777654   24789


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEeCHH
Q psy2359          81 SAELRVLSAEMVKLAYEAVPFERLSISQD  109 (137)
Q Consensus        81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~e  109 (137)
                      .+++..|++..|+.|..-+|+.....+.+
T Consensus       151 aeqvaaieqsvNe~I~d~~~~~v~E~sl~  179 (415)
T KOG2105|consen  151 AEQVAAIEQSVNEKIRDRLPVNVRELSLD  179 (415)
T ss_pred             HHHHHHHHHHHHHHHHhccchheeecccC
Confidence            99999999999999999999887776654

>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp

Probab=90.62  E-value=0.75  Score=29.80  Aligned_cols=37  Identities=14%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHH
Q psy2359          77 WKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEA  113 (137)
Q Consensus        77 ~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~  113 (137)
                      .++|-+.+..|.++||++.+.++-=.|..|+.+-..+
T Consensus        43 ~pFs~d~IN~vT~~mN~LAk~givP~Rk~VT~eMV~E   79 (84)
T PF10752_consen   43 EPFSTDKINEVTKEMNELAKQGIVPTRKYVTVEMVKE   79 (84)
T ss_pred             CCCcHHHHHHHHHHHHHHHHcCCCCcchhccHHHHHH
Confidence            5899999999999999999999988899999865544

>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]

Probab=80.91  E-value=14  Score=26.87  Aligned_cols=61  Identities=23%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCH-HHHHHHHHHHHHHHH
Q psy2359          27 TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTS-AELRVLSAEMVKLAY   96 (137)
Q Consensus        27 ~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~-edl~~Ie~~m~~iI~   96 (137)
                      .=-||+-||++.-+++-..+..++.=.+.+|=   ..|||.-+. +     ..++ +-+..++.-|+++..
T Consensus        51 ~~iHTlEHL~A~~iRnh~~g~~~iID~SPMGC---rTGFYm~l~-G-----~~~~~~i~~~~~~~m~dvl~  112 (161)
T COG1854          51 AGIHTLEHLLAGFIRNHLNGNVEIIDISPMGC---RTGFYMILI-G-----TPTSQDIADVLEATMKDVLK  112 (161)
T ss_pred             cchhhHHHHHHHHHHhcccCceeEEEecCccc---ccceEEEEE-C-----CCCHHHHHHHHHHHHHHHHc
Confidence            34699999999999987654222210012222   237998764 3     3455 445667888888887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	6e-10
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	3e-07
1tke_A	224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	5e-06

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645

 Score = 54.9 bits (133), Expect = 6e-10
 Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 15/129 (11%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
           + +PLE+D  ++++     +   +      S + ++   +   + +   V+    P   +
Sbjct: 49  LTKPLETDGSIEIVTPGSEE---ALEVLRHSTAHLMAHAIKRLYGN---VKFGVGPV--I 100

Query: 61  KSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
           + G F YD      D  +  +S +   +   M ++  E +  ER  +S+D A+ LF +++
Sbjct: 101 EGG-FYYDF-----DIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDE 154

Query: 120 YKLEQIPSI 128
           YKLE I +I
Sbjct: 155 YKLELIDAI 163

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 29/134 (21%)

Query: 1   MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPS--- 57
               +E+D +L ++   D +          SC+     +L +A K     QL  +P    
Sbjct: 47  ACDLIENDAQLSIITAKDEEGLE---IIRHSCA----HLLGHAIK-----QL--WPHTKM 92

Query: 58  ---PNVKSGSFVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSISQDLAEA 113
              P + +G F YDV     D  +  + E +  L   M +LA +     +  +S   A  
Sbjct: 93  AIGPVIDNG-FYYDV-----DLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARE 146

Query: 114 LFE--HNKYKLEQI 125
            F      YK+  +
Sbjct: 147 TFANRGESYKVSIL 160

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224

 Score = 43.2 bits (103), Expect = 5e-06
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 33/140 (23%)

Query: 3   RPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPS----- 57
             +E+D +L ++   D +          SC+     +L +A K     QL  +P      
Sbjct: 49  DLIENDAQLSIITAKDEEGLE---IIRHSCA----HLLGHAIK-----QL--WPHTKMAI 94

Query: 58  -PNVKSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALF 115
            P + +G F YDV     D  +  T  ++  L   M +LA +     +  +S   A   F
Sbjct: 95  GPVIDNG-FYYDV-----DLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETF 148

Query: 116 EHN--KYKLEQIPSIVQQSI 133
            +    YK+     I+ ++I
Sbjct: 149 ANRGESYKVS----ILDENI 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
1tke_A	224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	99.96
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.93
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.93
1v4p_A	157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	99.83
3kew_A	241	DHHA1 domain protein; structural genomics, PSI-2,	99.49
2ztg_A	739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	99.44
2zze_A	752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	99.39
2e1b_A	216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	99.31
1wwt_A	88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	97.91
2kmm_A	73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	83.91

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*

Probab=99.96  E-value=2.6e-29  Score=190.06  Aligned_cols=117  Identities=21%  Similarity=0.362  Sum_probs=107.8

Q ss_pred             CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359           1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT   80 (137)
Q Consensus         1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it   80 (137)
                      |++|+..||.|+||++++++|   +++||||++|||++|++++||+ .++    .+|+++ ++||||||..+    .++|
T Consensus        47 L~~~l~~~~~ve~it~~~~~g---~~~~~HS~~HlL~~A~~~~~~~-~~~----~~g~~~-~~g~y~d~~~~----~~~t  113 (224)
T 1tke_A           47 ACDLIENDAQLSIITAKDEEG---LEIIRHSCAHLLGHAIKQLWPH-TKM----AIGPVI-DNGFYYDVDLD----RTLT  113 (224)
T ss_dssp             TTCCBCSCEEEEEECTTSHHH---HHHHHHHHHHHHHHHHHHHSTT-CEE----CCCCEE-TTEEEEEEECS----SCCC
T ss_pred             cceEcCCCCeEEEEecCchhH---HHHHHHHHHHHHHHHHHHHCCC-cEE----EECCcc-CCeEEEEEeCC----CCCC
Confidence            678999999999999999999   9999999999999999999997 666    678888 56899999876    5899


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhcccc-ccc
Q psy2359          81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPS-IVQ  130 (137)
Q Consensus        81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll~~-~~~  130 (137)
                      ++|+++||++|+++|++|+||++..++++||.++|+.  ++||++|++. +|.
T Consensus       114 ~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~  166 (224)
T 1tke_A          114 QEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAH  166 (224)
T ss_dssp             HHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCC
Confidence            9999999999999999999999999999999999987  8999999986 643

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1

Probab=99.93  E-value=4.5e-26  Score=194.53  Aligned_cols=118  Identities=21%  Similarity=0.364  Sum_probs=108.9

Q ss_pred             CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359           1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT   80 (137)
Q Consensus         1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it   80 (137)
                      |++|++.||+|+|||+++++|   ++++|||++|||++|++++||+ +++    .+|++++ +||||||..+    .++|
T Consensus        47 l~~~l~~d~~~~~~~~~~~~~---~~~~~HSa~HlL~~Al~~~~~~-~~~----~~G~~i~-~gfy~Df~~~----~~~t  113 (642)
T 1qf6_A           47 ACDLIENDAQLSIITAKDEEG---LEIIRHSCAHLLGHAIKQLWPH-TKM----AIGPVID-NGFYYDVDLD----RTLT  113 (642)
T ss_dssp             TTSCBCSCEECCEECTTSHHH---HHHHHHHHHHHHHHHHHHHCTT-CEE----CCCCEET-TEEEEEEECS----SCCC
T ss_pred             cccccCCCceEEEeecCcHHH---HHHHHHHHHHHHHHHHHHhCCC-cEE----EECCccC-CeeEEEEeCC----CCCC
Confidence            689999999999999999999   9999999999999999999998 666    6899995 6799999876    5899


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhcc-cccccc
Q psy2359          81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQI-PSIVQQ  131 (137)
Q Consensus        81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll-~~~~~~  131 (137)
                      ++|+++||++|+++|++|+||++..+++++|.++|+.  ++||++|+ +.++.+
T Consensus       114 ~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~  167 (642)
T 1qf6_A          114 QEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHD  167 (642)
T ss_dssp             HHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCC
Confidence            9999999999999999999999999999999999988  89999999 766543

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*

Probab=99.93  E-value=3.1e-26  Score=195.45  Aligned_cols=118  Identities=23%  Similarity=0.438  Sum_probs=109.7

Q ss_pred             CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359           1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT   80 (137)
Q Consensus         1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it   80 (137)
                      |++|+..||+|+||++++++|   +++||||++|||++|++++||+ .++    .+|+++ .+||||||..+    .++|
T Consensus        49 l~~~l~~d~~v~~~~~~~~~g---~~~~~HSa~HlL~~A~~~~~~~-~~~----~~g~~~-~~g~~~Df~~~----~~~t  115 (645)
T 1nyr_A           49 LTKPLETDGSIEIVTPGSEEA---LEVLRHSTAHLMAHAIKRLYGN-VKF----GVGPVI-EGGFYYDFDID----QNIS  115 (645)
T ss_dssp             TTSCCCSCBCCCEECTTSHHH---HHHHHHHHHHHHHHHHHHHSSS-CEE----CCCCEE-TTEEEEEEECS----SCCC
T ss_pred             CCcccCCCCeEEEeeccchhH---HHHHHHHHHHHHHHHHHHHcCC-cEE----EECCcc-CCceEEEecCC----CCCC
Confidence            689999999999999999999   9999999999999999999998 666    578999 56899999876    5899


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhcChhhhhcccccccc
Q psy2359          81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQ  131 (137)
Q Consensus        81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~~~~k~~ll~~~~~~  131 (137)
                      ++|+++||++|+++|++|+||++..++++||.++|++++||.+||+.++.+
T Consensus       116 ~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~  166 (645)
T 1nyr_A          116 SDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPED  166 (645)
T ss_dssp             STTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCC
Confidence            999999999999999999999999999999999999899999999987654

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A

Probab=99.83  E-value=1.9e-20  Score=134.18  Aligned_cols=89  Identities=18%  Similarity=0.205  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      +++||||++|||++|++++||..+++    .+++++.++|+||+|+.+    ..+|++++++||++|+++|++|+||++.
T Consensus         4 ~~~~~HSa~HlL~~Al~~~~~~~~~~----~~~~~i~~~~~~~~~d~~----~~~t~e~l~~IE~~~n~~I~~~~pi~~~   75 (157)
T 1v4p_A            4 IEVRTHSALHVVKGAVVKVLGSEAKW----TYSTYVKGNKGVLIVKFD----RKPSDEEIREIERLANEKVKENAPIKIY   75 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGCC----EEEEEEETTEEEEEEECS----SCCCHHHHHHHHHHHHHHHHHTCBCEEE
T ss_pred             hHHHhHHHHHHHHHHHHHHhCCCcEE----ecCceecCCCcEEEEEeC----CCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            89999999999999999999832433    456778655899999876    5899999999999999999999999999


Q ss_pred             EeCHHHHHHHhhcChhh
Q psy2359         105 SISQDLAEALFEHNKYK  121 (137)
Q Consensus       105 ~v~~eeA~~~f~~~~~k  121 (137)
                      .+++++|.++|+.+.++
T Consensus        76 ~~~~~eA~~~f~~~~~~   92 (157)
T 1v4p_A           76 ELPREEAEKMFGEDMYD   92 (157)
T ss_dssp             EEEHHHHHHHHGGGGSC
T ss_pred             EeCHHHHHHhhCccccc
Confidence            99999999999875444

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}

Probab=99.49  E-value=2.8e-14  Score=108.91  Aligned_cols=78  Identities=10%  Similarity=0.050  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      ..+.+||++|||++|++++||. ..      .|+.+..++||+||. .     ++|++++++||++||++|++|+||++.
T Consensus        93 ~~~~~HTa~HLL~~al~~~~g~-~~------~G~~v~~~~~r~Df~-~-----~lt~e~l~~IE~~vn~~I~~~~pV~~~  159 (241)
T 3kew_A           93 DGMQQHLGQHLLSGCFYDLFGA-NT------CGFHLGKEISTVDIV-G-----FLDEKTIREAEKEANRLIFENLEVKSY  159 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC-CE------EEEEECSSCEEEEEE-S-----CCCHHHHHHHHHHHHHHHHHTCBEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHCCC-Ce------EeccccCCeEEEEEC-C-----CCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            5688999999999999999997 32      466665568999998 5     799999999999999999999999999


Q ss_pred             EeCHHHHHHHh
Q psy2359         105 SISQDLAEALF  115 (137)
Q Consensus       105 ~v~~eeA~~~f  115 (137)
                      +++++||.+++
T Consensus       160 ~~~~~eA~~~~  170 (241)
T 3kew_A          160 APSKKELKKVK  170 (241)
T ss_dssp             CCCTTTTTTCC
T ss_pred             EcCHHHHHhcC
Confidence            99999998875

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}

Probab=99.44  E-value=5e-13  Score=115.25  Aligned_cols=83  Identities=14%  Similarity=0.095  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      ..+++||++|||++|++++||..  +.   ..+..+..+|+||||..+    ..+|++++++||++|+++|++|+||++.
T Consensus       595 ~~m~~HTAtHLL~~ALr~vlG~~--v~---q~GS~v~~d~~r~DF~~~----~~lT~edL~~IE~~vNeiI~~nlpV~~~  665 (739)
T 2ztg_A          595 RHMRHHSATHVLLYSLQKVLGNH--VW---QAGARKEFSKARLDVTHF----RRPSEEEIKEIEMLANREILANKPIKWE  665 (739)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT--CC---EEECCSCCSSCEEEEECS----SCCCHHHHHHHHHHHHHHHHTTCBEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCc--EE---ecCcEEcCCcEEEEEeCC----CCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            56999999999999999999862  21   123333456899999865    5899999999999999999999999999


Q ss_pred             EeCHHHHHHHhh
Q psy2359         105 SISQDLAEALFE  116 (137)
Q Consensus       105 ~v~~eeA~~~f~  116 (137)
                      .+++++|.++|+
T Consensus       666 ~~s~eEA~~~~~  677 (739)
T 2ztg_A          666 WMDRIEAERKFG  677 (739)
T ss_dssp             EEEHHHHHHHHC
T ss_pred             EeCHHHHHHhCC
Confidence            999999999873

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*

Probab=99.39  E-value=1.4e-12  Score=112.66  Aligned_cols=83  Identities=10%  Similarity=0.044  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      ..+.+||++|||++|++++||. ...    ..|+.+..++||+||...    ..+|++++++||++||++|++|+||++.
T Consensus       608 ~~mr~HTAtHLL~~ALr~vlG~-~v~----q~Gs~v~~d~~rfDFs~~----~~lt~edL~~IE~~vNeiI~~nlpV~~~  678 (752)
T 2zze_A          608 QHMRHHTGTHVLMGALVRVLGR-HVW----QAGSQLTTDWARLDISHY----XRISEEELXEIEMLANRIVMEDRXVTWE  678 (752)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCT-TCE----EEEEEECSSCEEEEEECS----SCCCHHHHHHHHHHHHHHHHHTCBEEEE
T ss_pred             HHHHHhHHHHHHHHHHHHHcCC-cee----eecCcccCCceEEEEeCC----CCCCHHHHHHHHHHHHHHHHhCCcccee
Confidence            5688999999999999999986 322    246666567899999875    5899999999999999999999999999


Q ss_pred             EeCHHHHHHHhh
Q psy2359         105 SISQDLAEALFE  116 (137)
Q Consensus       105 ~v~~eeA~~~f~  116 (137)
                      .+++++|.+++.
T Consensus       679 ~~s~eEA~~~~~  690 (752)
T 2zze_A          679 WLPRTTAEQXYG  690 (752)
T ss_dssp             EEEHHHHHHHHC
T ss_pred             ecCHHHHhhcch
Confidence            999999999875

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2

Probab=99.31  E-value=3.7e-12  Score=95.64  Aligned_cols=75  Identities=9%  Similarity=-0.009  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHcCCC-ceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeE
Q psy2359          24 SNRTFWRSCSIMLGSVLSNAFKDN-VEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFE  102 (137)
Q Consensus        24 ~~~~y~~S~~~lL~~A~~~~~~~~-~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~  102 (137)
                      ...+.+||++|||++|++++||.. +.+     .|+.+..++||+||..+    .+++++ +++||++||++|++|+||+
T Consensus        93 ~~~~~~HTA~HlL~~Al~~~~g~~~~~~-----~g~~v~~~~~r~Df~~~----~~lt~e-l~~IE~~vn~~I~~~~pv~  162 (216)
T 2e1b_A           93 YKLMRIHTGLHLLEHVLNEVLGEGNWQL-----VGSGMSVEKGRYDIAYP----ENLNKY-KEQIISLFNKYVDEGGEVK  162 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTSCEE-----EECCBCSSEEEEEEECS----SCGGGG-HHHHHHHHHHHHHHCCBEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHcCCcccee-----eeeeEcCCcEEEEEeCC----CCCCHH-HHHHHHHHHHHHhcCCCEE
Confidence            366889999999999999999861 133     35556567899999876    468886 9999999999999999999


Q ss_pred             EEEeCH
Q psy2359         103 RLSISQ  108 (137)
Q Consensus       103 ~~~v~~  108 (137)
                      +..+++
T Consensus       163 ~~~~~~  168 (216)
T 2e1b_A          163 IWWEGD  168 (216)
T ss_dssp             EEESSS
T ss_pred             EEEcCC
Confidence            998885

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}

Probab=97.91  E-value=4.4e-07  Score=58.41  Aligned_cols=30  Identities=40%  Similarity=0.772  Sum_probs=27.7

Q ss_pred             CCCccCCCceEEEeecCCCCChhhhHHHHHHHH
Q psy2359           1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCS   33 (137)
Q Consensus         1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~   33 (137)
                      |++||+.||.|+||++++++|   +++||||++
T Consensus        58 L~~~l~~d~~ve~vt~~~~eg---~~i~rHS~~   87 (88)
T 1wwt_A           58 LDRPLEEDCTLELLKFEDEEA---QAVYSGPSS   87 (88)
T ss_dssp             SSSCCCSSEEEEECSSCCSCC---SCSCCCCSC
T ss_pred             CCcCcCCCCEEEEEeCCCHHH---hhheeccCC
Confidence            678999999999999999999   899999974

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}

Probab=83.91  E-value=0.83  Score=27.09  Aligned_cols=20  Identities=15%  Similarity=0.169  Sum_probs=17.2

Q ss_pred             CCCccCCCceEEEeecCCCC
Q psy2359           1 MHRPLESDCELQLLHFYDSD   20 (137)
Q Consensus         1 L~~~l~~d~~ie~l~~~~~~   20 (137)
                      |+++|..+|.|+|+++.+..
T Consensus        48 l~~~L~~~~~Veivt~~~~~   67 (73)
T 2kmm_A           48 LSYVLNSGDQVEVLSSKSLE   67 (73)
T ss_dssp             TTCBCCSSSBEEEEECCCCC
T ss_pred             CCcCcCCCCEEEEEECCCCc
Confidence            56899999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1nyra3	179	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.93
d1tkea2	162	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.92
d1v4pa_	151	Hypothetical protein PH0574 {Archaeon Pyrococcus h	99.55
d2e1ba2	129	AlaX-M trans-editing enzyme, C-terminal domain {Py	98.85

>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.93  E-value=1.9e-26  Score=167.67  Aligned_cols=105  Identities=22%  Similarity=0.385  Sum_probs=95.2

Q ss_pred             ecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q psy2359          15 HFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKL   94 (137)
Q Consensus        15 ~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~i   94 (137)
                      |++|++|   +++|||||+|||++|++++||+ ..+    ..|+.+ ++||||||..+    .++|++||.+||+.|++|
T Consensus         1 T~~~~~~---l~i~~HSathlL~~Al~~~~~~-~~~----~~G~~~-~~gf~~Df~~~----~~lt~edl~~IE~~m~~i   67 (179)
T d1nyra3           1 TPGSEEA---LEVLRHSTAHLMAHAIKRLYGN-VKF----GVGPVI-EGGFYYDFDID----QNISSDDFEQIEKTMKQI   67 (179)
T ss_dssp             CTTSHHH---HHHHHHHHHHHHHHHHHHHSSS-CEE----CCCCEE-TTEEEEEEECS----SCCCSTTHHHHHHHHHHH
T ss_pred             CCcCHHH---HHHHhHhHHHHHHHHHHHHCCC-cEE----EEeeee-ccceEEEEeec----ccCCHHHHHHHHHHHHHH
Confidence            5778888   9999999999999999999998 666    468888 56899999876    689999999999999999


Q ss_pred             HHcCCCeEEEEeCHHHHHHHhhcChhhhhccccccccc
Q psy2359          95 AYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQS  132 (137)
Q Consensus        95 I~~~~pi~~~~v~~eeA~~~f~~~~~k~~ll~~~~~~~  132 (137)
                      |++|+||++..+++++|+++|+.+.||.+++...+.++
T Consensus        68 I~~~~~i~~~~~~~~eA~~~f~~~~~k~~~i~~~~~~~  105 (179)
T d1nyra3          68 VNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDE  105 (179)
T ss_dssp             HHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSC
T ss_pred             HHhhcceEEEEcCHHHHHHHhccCccceehhhhcCCCC
Confidence            99999999999999999999999999999998876543

>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.8e-25  Score=159.76  Aligned_cols=98  Identities=21%  Similarity=0.354  Sum_probs=88.6

Q ss_pred             CCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy2359          18 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYE   97 (137)
Q Consensus        18 ~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~   97 (137)
                      +++|   +++||||++|||++|++++||+ +++    .+||++ ++||||||..+    .+++++|+.+|+++|+++|.+
T Consensus         2 d~eg---l~v~rhS~ahlLa~Av~~l~p~-~kl----~~g~~~-~~GfyyD~~~~----~~~~~edl~~ie~~m~~ii~~   68 (162)
T d1tkea2           2 DEEG---LEIIRHSCAHLLGHAIKQLWPH-TKM----AIGPVI-DNGFYYDVDLD----RTLTQEDVEALEKRMHELAEK   68 (162)
T ss_dssp             SHHH---HHHHHHHHHHHHHHHHHHHSTT-CEE----CCCCEE-TTEEEEEEECS----SCCCHHHHHHHHHHHHHHHTT
T ss_pred             CHHH---HHHHHHHHHHHHHHHHHHHCCC-cEE----Eecccc-CCeEEEEeecc----CCCCHHHHHHHHHHHHHHHHh
Confidence            4567   9999999999999999999999 777    789999 56899999976    689999999999999999999


Q ss_pred             CCCeEEEEeCHHHHHHHhhc--Chhhhhccccc
Q psy2359          98 AVPFERLSISQDLAEALFEH--NKYKLEQIPSI  128 (137)
Q Consensus        98 ~~pi~~~~v~~eeA~~~f~~--~~~k~~ll~~~  128 (137)
                      ++||++..+++++|+++|..  +++|.+++...
T Consensus        69 ~~~~~~~~~s~~~a~~~~~~~~~~~k~~~~~~~  101 (162)
T d1tkea2          69 NYDVIKKKVSWHEARETFANRGESYKVSILDEN  101 (162)
T ss_dssp             CCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCceEEEechHHHHHHHHHhhcchhhheeecc
Confidence            99999999999999999998  77787777653

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: Hypothetical protein PH0574
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=1.1e-14  Score=102.00  Aligned_cols=88  Identities=18%  Similarity=0.205  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359          25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL  104 (137)
Q Consensus        25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~  104 (137)
                      +.+-.||++|||++|++++|+.....    ..+..+..+..++|+.++    ..++++++.+||+.||++|++|.||+..
T Consensus         4 ~~mR~HTa~HlL~~a~~~~~g~~~~~----~~~~~~~~~~~~~d~~~~----~~~t~e~l~~iE~~~n~~I~~~~~v~~~   75 (151)
T d1v4pa_           4 IEVRTHSALHVVKGAVVKVLGSEAKW----TYSTYVKGNKGVLIVKFD----RKPSDEEIREIERLANEKVKENAPIKIY   75 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGCC----EEEEEEETTEEEEEEECS----SCCCHHHHHHHHHHHHHHHHHTCBCEEE
T ss_pred             ccHHHhHHHHHHHHHHHHHhCcCcee----eeeceecCCccEEEEecc----ccchhHHHHHHHHHHHHhhhcccccceE
Confidence            56778999999999999999642221    234455455567888876    5899999999999999999999999999


Q ss_pred             EeCHHHHHHHhhcChh
Q psy2359         105 SISQDLAEALFEHNKY  120 (137)
Q Consensus       105 ~v~~eeA~~~f~~~~~  120 (137)
                      .++++||.++|....+
T Consensus        76 ~~~~~ea~~~~~~~~~   91 (151)
T d1v4pa_          76 ELPREEAEKMFGEDMY   91 (151)
T ss_dssp             EEEHHHHHHHHGGGGS
T ss_pred             Eeeccccccccccccc
Confidence            9999999999976333

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: AlaX-M trans-editing enzyme, C-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=6.3e-09  Score=70.40  Aligned_cols=73  Identities=11%  Similarity=-0.016  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEE
Q psy2359          26 RTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLS  105 (137)
Q Consensus        26 ~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~  105 (137)
                      .+-.||++|||++|++++|+. ...+   ..|..+..+.+++||..+    ..++++ .++|++.++++|.+++||....
T Consensus         8 ~mr~HTa~Hll~~al~~~~g~-~~~~---~~G~~i~~~~~r~Df~~~----~~l~~~-~~~ie~~~n~~I~~~~~v~~~~   78 (129)
T d2e1ba2           8 LMRIHTGLHLLEHVLNEVLGE-GNWQ---LVGSGMSVEKGRYDIAYP----ENLNKY-KEQIISLFNKYVDEGGEVKIWW   78 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-TSCE---EEECCBCSSEEEEEEECS----SCGGGG-HHHHHHHHHHHHHHCCBEEEEE
T ss_pred             HHHHhHHHHHHHHHHHHhcCC-Cccc---ccccccccceEEEEEecc----cccchH-HHHHHHHHHHHHHhccchhhhh
Confidence            345699999999999999975 2221   245666566789999876    456644 5899999999999999998765


Q ss_pred             eC
Q psy2359         106 IS  107 (137)
Q Consensus       106 v~  107 (137)
                      .+
T Consensus        79 ~~   80 (129)
T d2e1ba2          79 EG   80 (129)
T ss_dssp             SS
T ss_pred             cc
Confidence            43