Psyllid ID: psy2365

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
MSADILHAGSHYGGSNESFYHYNTPNNNVMSYNSGYHPPPLYTAGPPEDKHGATLSNITTGATDCIYWSEDMQSPDSRYVTRSMSTSSDGFDEDEDQSERFCPSNDYTKYYYQDGVGPGAYPNVKHIVEPSYVNLDTATKTLRTVSKAGSIKSSLGNHKNRRIPDLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDIISIDDFKADLSNHSSHRKNKSQYDSPSEISSNQSSQYVMDPSCQQYTSPAF
cccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccc
cccHEEEcccccccccccEEEEccccccEEEEccccccccccccccccccccEEEEEccccccccEEcccccccccccccccccccccccccccccccHHccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccccccccccccccccccccc
msadilhagshyggsnesfyhyntpnnnvmsynsgyhppplytagppedkhgatlsnittgatdciywsedmqspdsryvtrsmstssdgfdededqserfcpsndytkyyyqdgvgpgaypnvkhivepsyvnldtATKTLRTVSKAGSIKsslgnhknrripdlpiirVVKRRNTANKKERRRTQSINNAFSDLrecipnvpsdtklskiktLRLATSYISYLMKILetddiisiddfkadlsnhsshrknksqydspseissnqssqyvmdpscqqytspaf
MSADILHAGSHYGGSNESFYHYNTPNNNVMSYNSGYHPPPLYTAGPPEDKHGATLSNITTGATDCIYWSEDMQSPDSRYVTRSMSTssdgfdededqserFCPSNDYTKYYYQDGVGPGAYPNVKHIVEPSYVNLDTATKTLRTVSKagsiksslgnhknrripdlpiirvvkrrntankkerrrtqsinnafsdlrecipnvpsdtklskiktlRLATSYISYLMKILETDDIISIDDFKADLSNHSshrknksqydspseissnqssqyvmdPSCQQYTSPAF
MSADILHAGSHYGGSNESFYHYNTPNNNVMSYNSGYHPPPLYTAGPPEDKHGATLSNITTGATDCIYWSEDMQSPDSRYVTRSMSTSSDGFDEDEDQSERFCPSNDYTKYYYQDGVGPGAYPNVKHIVEPSYVNLDTATKTLRTVSKAGSIKSSLGNHKNRRIPDLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDIISIDDFKADLSNHSSHRKNKSQYDspseissnqssQYVMDPSCQQYTSPAF
******************FYHYNT******************************LSNITTGATDCIYWS********************************CPSNDYTKYYYQDGVGPGAYPNVKHIVEPSYVNLDTATKTLRTV*******************DLPIIRVV**********************DLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDIISIDDFK********************************************
****I**AGSHYGGSNESFYHYNTPNNNVMSYNS**************************************************************************************************************************************************KERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKI*********************************************************
MSADILHAGSHYGGSNESFYHYNTPNNNVMSYNSGYHPPPLYTAGPPEDKHGATLSNITTGATDCIYWSEDMQS*************************RFCPSNDYTKYYYQDGVGPGAYPNVKHIVEPSYVNLDTATKTLRTVSKAGSIKSSLGNHKNRRIPDLPIIRVVKRRN********RTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDIISIDDFKADLS**************************VMDPSCQQYTSPAF
*S*DILHAGSHYGGSNESFYHYNTPNNNVMSYNSGYHPPPLYTAGPPEDKHGATLSNITTGATDCIYWSE******************************FCPSNDYTKYYYQDGVGPGAYPNV******************************************PIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETD****************************************M*PSCQQYT****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSADILHAGSHYGGSNESFYHYNTPNNNVMSYNSGYHPPPLYTAGPPEDKHGATLSNITTGATDCIYWSEDMQSPDSRYVTRSMSTSSDGFDEDEDQSERFCPSNDYTKYYYQDGVGPGAYPNVKHIVEPSYVNLDTATKTLRTVSKAGSIKSSLGNHKNRRIPDLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDIISIDDFKADLSNHSSHRKNKSQYDSPSEISSNQSSQYVMDPSCQQYTSPAF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
P57102208 Heart- and neural crest d yes N/A 0.263 0.360 0.723 2e-24
P61295217 Heart- and neural crest d yes N/A 0.256 0.336 0.729 4e-24
Q61039217 Heart- and neural crest d yes N/A 0.256 0.336 0.729 4e-24
P61296217 Heart- and neural crest d yes N/A 0.256 0.336 0.729 4e-24
Q90690216 Heart- and neural crest d yes N/A 0.256 0.337 0.729 5e-24
P97832216 Heart- and neural crest d no N/A 0.326 0.430 0.563 8e-24
Q64279216 Heart- and neural crest d no N/A 0.336 0.444 0.556 1e-23
P57101210 Heart- and neural crest d N/A N/A 0.263 0.357 0.710 3e-23
Q28555204 Heart- and neural crest d N/A N/A 0.312 0.436 0.566 1e-22
Q0VCE2218 Heart- and neural crest d no N/A 0.312 0.408 0.566 2e-22
>sp|P57102|HAND2_DANRE Heart- and neural crest derivatives-expressed protein 2 OS=Danio rerio GN=hand2 PE=2 SV=1 Back     alignment and function desciption
 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 65/76 (85%), Gaps = 1/76 (1%)

Query: 170 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 229
           R VKRR TAN+KERRRTQSIN+AF++LRECIPNVP+DTKLSKIKTLRLATSYI+YLM IL
Sbjct: 87  RTVKRRPTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDIL 146

Query: 230 ETDDI-ISIDDFKADL 244
           + D+     + FKA+ 
Sbjct: 147 DKDEQNGETEAFKAEF 162
Essential for myocardial and pectoral fin differentiation, patterning and morphogenesis.
Danio rerio (taxid: 7955)
>sp|P61295|HAND2_RAT Heart- and neural crest derivatives-expressed protein 2 OS=Rattus norvegicus GN=Hand2 PE=2 SV=1 Back     alignment and function description
>sp|Q61039|HAND2_MOUSE Heart- and neural crest derivatives-expressed protein 2 OS=Mus musculus GN=Hand2 PE=1 SV=3 Back     alignment and function description
>sp|P61296|HAND2_HUMAN Heart- and neural crest derivatives-expressed protein 2 OS=Homo sapiens GN=HAND2 PE=1 SV=1 Back     alignment and function description
>sp|Q90690|HAND2_CHICK Heart- and neural crest derivatives-expressed protein 2 OS=Gallus gallus GN=HAND2 PE=2 SV=1 Back     alignment and function description
>sp|P97832|HAND1_RAT Heart- and neural crest derivatives-expressed protein 1 OS=Rattus norvegicus GN=Hand1 PE=2 SV=2 Back     alignment and function description
>sp|Q64279|HAND1_MOUSE Heart- and neural crest derivatives-expressed protein 1 OS=Mus musculus GN=Hand1 PE=1 SV=1 Back     alignment and function description
>sp|P57101|HAND2_XENLA Heart- and neural crest derivatives-expressed protein 2 OS=Xenopus laevis GN=hand2 PE=2 SV=1 Back     alignment and function description
>sp|Q28555|HAND1_SHEEP Heart- and neural crest derivatives-expressed protein 1 OS=Ovis aries GN=HAND1 PE=2 SV=1 Back     alignment and function description
>sp|Q0VCE2|HAND1_BOVIN Heart- and neural crest derivatives-expressed protein 1 OS=Bos taurus GN=HAND1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
380019878284 PREDICTED: uncharacterized protein LOC10 0.421 0.422 0.534 5e-28
328782232285 PREDICTED: hypothetical protein LOC10057 0.421 0.421 0.527 1e-27
307215253303 Heart- and neural crest derivatives-expr 0.368 0.346 0.579 2e-27
350397475285 PREDICTED: hypothetical protein LOC10074 0.385 0.385 0.580 5e-27
242005999156 dhand, putative [Pediculus humanus corpo 0.291 0.532 0.738 6e-27
322802822296 hypothetical protein SINV_10287 [Solenop 0.361 0.347 0.603 8e-27
340715290285 PREDICTED: hypothetical protein LOC10064 0.385 0.385 0.571 9e-27
307179435267 Heart- and neural crest derivatives-expr 0.4 0.426 0.564 2e-26
332023986290 Heart- and neural crest derivatives-expr 0.284 0.279 0.746 2e-26
193632021 445 PREDICTED: hypothetical protein LOC10016 0.263 0.168 0.815 3e-26
>gi|380019878|ref|XP_003693828.1| PREDICTED: uncharacterized protein LOC100865984 [Apis florea] Back     alignment and taxonomy information
 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 9/129 (6%)

Query: 144 TVSKAGSIKSSLGNHKNRRIPDLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNV 203
           TVS    I  SL  H  + + D  ++   KRRNTANKKERRRTQSINNAF+DLR+CIPNV
Sbjct: 127 TVSSMNQIDGSLQQHLRQGVRDGGVVVRPKRRNTANKKERRRTQSINNAFADLRDCIPNV 186

Query: 204 PSDTKLSKIKTLRLATSYISYLMKILETDDIISIDDFKADLSNHSSHRKNKSQYDSPSEI 263
           P+DTKLSKIKTLRLA SYI YLM +LE+D+      F+A++   S+ R+NK+       +
Sbjct: 187 PADTKLSKIKTLRLAASYIGYLMAVLESDEGEEPQTFRAEIL--SNGRRNKT-------V 237

Query: 264 SSNQSSQYV 272
            +NQ+  Y+
Sbjct: 238 QANQNESYL 246

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328782232|ref|XP_003250109.1| PREDICTED: hypothetical protein LOC100576222 [Apis mellifera] Back     alignment and taxonomy information
>gi|307215253|gb|EFN90007.1| Heart- and neural crest derivatives-expressed protein 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350397475|ref|XP_003484889.1| PREDICTED: hypothetical protein LOC100740604 [Bombus impatiens] Back     alignment and taxonomy information
>gi|242005999|ref|XP_002423846.1| dhand, putative [Pediculus humanus corporis] gi|212507068|gb|EEB11108.1| dhand, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322802822|gb|EFZ23021.1| hypothetical protein SINV_10287 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340715290|ref|XP_003396149.1| PREDICTED: hypothetical protein LOC100643078 [Bombus terrestris] Back     alignment and taxonomy information
>gi|307179435|gb|EFN67759.1| Heart- and neural crest derivatives-expressed protein 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332023986|gb|EGI64204.1| Heart- and neural crest derivatives-expressed protein 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|193632021|ref|XP_001945320.1| PREDICTED: hypothetical protein LOC100168554 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
ZFIN|ZDB-GENE-000511-1208 hand2 "heart and neural crest 0.312 0.427 0.630 8.7e-24
UNIPROTKB|Q90690216 HAND2 "Heart- and neural crest 0.326 0.430 0.621 1.4e-23
UNIPROTKB|F1MLT3191 LOC781874 "Uncharacterized pro 0.326 0.486 0.621 1.4e-23
UNIPROTKB|F1PX30222 HAND2 "Uncharacterized protein 0.326 0.418 0.621 1.4e-23
UNIPROTKB|P61296217 HAND2 "Heart- and neural crest 0.326 0.428 0.621 1.4e-23
UNIPROTKB|F1RJ02176 HAND2 "Uncharacterized protein 0.326 0.528 0.621 1.4e-23
MGI|MGI:103580217 Hand2 "heart and neural crest 0.326 0.428 0.621 1.4e-23
RGD|621207217 Hand2 "heart and neural crest 0.326 0.428 0.621 1.4e-23
UNIPROTKB|P61295217 Hand2 "Heart- and neural crest 0.326 0.428 0.621 1.4e-23
UNIPROTKB|E1C225216 E1C225 "Uncharacterized protei 0.326 0.430 0.610 6.1e-23
ZFIN|ZDB-GENE-000511-1 hand2 "heart and neural crest derivatives expressed transcript 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 58/92 (63%), Positives = 71/92 (77%)

Query:   170 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 229
             R VKRR TAN+KERRRTQSIN+AF++LRECIPNVP+DTKLSKIKTLRLATSYI+YLM IL
Sbjct:    87 RTVKRRPTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDIL 146

Query:   230 ETDDIIS-IDDFKADL--SNHSSHRKNKSQYD 258
             + D+     + FKA+   ++    R+ K   D
Sbjct:   147 DKDEQNGGTEAFKAEFKKTDAKEERRKKEMND 178
GO:0046983 "protein dimerization activity" evidence=IEA
GO:0003144 "embryonic heart tube formation" evidence=IMP
GO:0003142 "cardiogenic plate morphogenesis" evidence=IMP
GO:0035118 "embryonic pectoral fin morphogenesis" evidence=IMP
GO:0035051 "cardiocyte differentiation" evidence=IMP
GO:0030859 "polarized epithelial cell differentiation" evidence=IMP
GO:0003007 "heart morphogenesis" evidence=IMP
GO:0060047 "heart contraction" evidence=IMP
GO:0003342 "proepicardium development" evidence=IMP
GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IMP
GO:0030878 "thyroid gland development" evidence=IMP
GO:0071908 "determination of intestine left/right asymmetry" evidence=IMP
GO:0003677 "DNA binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0007275 "multicellular organismal development" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0010002 "cardioblast differentiation" evidence=IMP
UNIPROTKB|Q90690 HAND2 "Heart- and neural crest derivatives-expressed protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLT3 LOC781874 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PX30 HAND2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P61296 HAND2 "Heart- and neural crest derivatives-expressed protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJ02 HAND2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:103580 Hand2 "heart and neural crest derivatives expressed transcript 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621207 Hand2 "heart and neural crest derivatives expressed 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P61295 Hand2 "Heart- and neural crest derivatives-expressed protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C225 E1C225 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q90691HAND1_CHICKNo assigned EC number0.54540.33680.4752yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 5e-19
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 8e-18
smart0035353 smart00353, HLH, helix loop helix domain 7e-17
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information 
 Score = 78.3 bits (194), Expect = 5e-19
 Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYL 225
           RR   N++ERRR   IN+AF +LRE +P  P + KLSK + LRLA  YI +L
Sbjct: 1   RRKAHNERERRRRDRINDAFEELRELLPT-PPNKKLSKAEILRLAIEYIKHL 51

Length = 52
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
KOG3960|consensus284 99.96
KOG4029|consensus228 99.71
KOG3898|consensus254 99.62
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.47
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.4
KOG4395|consensus285 99.33
smart0035353 HLH helix loop helix domain. 99.3
KOG4447|consensus173 99.26
KOG3910|consensus632 99.09
KOG0561|consensus 373 98.97
smart0052091 BASIC Basic domain in HLH proteins of MYOD family. 98.56
KOG1319|consensus229 98.35
KOG1318|consensus411 98.19
KOG2483|consensus232 97.89
PF0158686 Basic: Myogenic Basic domain; InterPro: IPR002546 97.87
KOG4447|consensus173 97.16
KOG4304|consensus 250 97.13
KOG3561|consensus 803 96.9
KOG2588|consensus 953 96.24
PLN0321793 transcription factor ATBS1; Provisional 89.98
KOG3558|consensus 768 87.89
>KOG3960|consensus Back     alignment and domain information 
Probab=99.96  E-value=1.2e-29  Score=233.42  Aligned_cols=147  Identities=29%  Similarity=0.403  Sum_probs=118.7

Q ss_pred             cccccCCCCcccccCCCCCCCCCcceeecccCCCCCCCCcccccccccccCCCcccc----ccCCC---------CCCCC
Q psy2365          55 LSNITTGATDCIYWSEDMQSPDSRYVTRSMSTSSDGFDEDEDQSERFCPSNDYTKYY----YQDGV---------GPGAY  121 (285)
Q Consensus        55 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~----~~~~~---------gpg~~  121 (285)
                      ||.|+.  ++.||+.+||+.++.+||-..          ...  ++   .+..++++    ++.++         .|+.-
T Consensus        20 l~~F~~--~p~~~Dg~n~~~~~~~~~e~~----------p~y--~~---t~~t~s~~~~~~kpe~~~~~ps~v~p~~~~~   82 (284)
T KOG3960|consen   20 LCSFAQ--TPDFYDGENFDSPDLRFFEAY----------PLY--PR---TAGTGSLCSQDFKPEAHSHFPSAVHPAPGSD   82 (284)
T ss_pred             cccccc--CccccCCCCCCchhhcccccC----------CCC--cc---ccccccccccccCccccccCccccccCCCCc
Confidence            999999  499999999999999999321          111  12   22222333    22222         23444


Q ss_pred             CCcccccccccccCCcccchhccccccCCCCCCCCCCCCCCCCCChhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy2365         122 PNVKHIVEPSYVNLDTATKTLRTVSKAGSIKSSLGNHKNRRIPDLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIP  201 (285)
Q Consensus       122 e~vk~~~e~s~~gld~~~~~l~~~sk~~s~ks~~g~~~~rr~~~~~~~~~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP  201 (285)
                      | .+|++.++++..+.++.|+.|+||+|++|+.                .++||++|++|||+|+++||+||+.||++.-
T Consensus        83 E-de~v~ap~~~shh~~g~cl~wackackrks~----------------svDRRKAATMRERRRLkKVNEAFE~LKRrT~  145 (284)
T KOG3960|consen   83 E-DEHVRAPSVDSHHQAGQCLLWACKACKRKST----------------SVDRRKAATMRERRRLKKVNEAFETLKRRTS  145 (284)
T ss_pred             c-cccccCCCCCcccCCcchHHHhhhhcccccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            4 5899999988889999999999999997754                5799999999999999999999999999998


Q ss_pred             CCCCCCCcchHHhhHHHHHHHHHHHHHHhhCCCCC
Q psy2365         202 NVPSDTKLSKIKTLRLATSYISYLMKILETDDIIS  236 (285)
Q Consensus       202 ~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~  236 (285)
                      .+| +|||+||||||.||+||+.||.||++.....
T Consensus       146 ~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~  179 (284)
T KOG3960|consen  146 SNP-NQRLPKVEILRSAIRYIERLQALLQEQDQAE  179 (284)
T ss_pred             CCc-cccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            776 6999999999999999999999999887743

>KOG4029|consensus Back     alignment and domain information
>KOG3898|consensus Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>KOG4395|consensus Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG4447|consensus Back     alignment and domain information
>KOG3910|consensus Back     alignment and domain information
>KOG0561|consensus Back     alignment and domain information
>smart00520 BASIC Basic domain in HLH proteins of MYOD family Back     alignment and domain information
>KOG1319|consensus Back     alignment and domain information
>KOG1318|consensus Back     alignment and domain information
>KOG2483|consensus Back     alignment and domain information
>PF01586 Basic: Myogenic Basic domain; InterPro: IPR002546 This basic domain is found in the MyoD family of muscle specific proteins that control muscle development Back     alignment and domain information
>KOG4447|consensus Back     alignment and domain information
>KOG4304|consensus Back     alignment and domain information
>KOG3561|consensus Back     alignment and domain information
>KOG2588|consensus Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG3558|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
2ql2_B60 Crystal Structure Of The Basic-Helix-Loop-Helix Dom 2e-07
>pdb|2QL2|B Chain B, Crystal Structure Of The Basic-Helix-Loop-Helix Domains Of The Heterodimer E47NEUROD1 BOUND TO DNA Length = 60 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231
           RR  AN +ER R   +N A  +LR+ +P      KLSKI+TLRLA +YI  L +IL +
Sbjct: 2   RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 2e-28
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 5e-23
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 2e-15
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 2e-12
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 4e-10
1hlo_A80 Protein (transcription factor MAX); transcriptiona 6e-10
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 1e-09
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 6e-09
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 1e-08
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 2e-04
1a0a_A63 BHLH, protein (phosphate system positive regulator 8e-04
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60 Back     alignment and structure
 Score =  102 bits (256), Expect = 2e-28
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query: 174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 231
           RR  AN +ER R   +N A  +LR+ +P      KLSKI+TLRLA +YI  L +IL +
Sbjct: 2   RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.88
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.87
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 99.81
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 99.8
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.69
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.57
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.56
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.51
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.47
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.32
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.31
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.19
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.16
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.11
4ati_A118 MITF, microphthalmia-associated transcription fact 99.08
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.58
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.23
4ath_A83 MITF, microphthalmia-associated transcription fact 97.23
3muj_A138 Transcription factor COE3; immunoglobulin like fol 92.0
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
Probab=99.88  E-value=3e-23  Score=152.95  Aligned_cols=58  Identities=47%  Similarity=0.679  Sum_probs=56.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365         174 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET  231 (285)
Q Consensus       174 RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~  231 (285)
                      ||.+||+|||+||++||.||+.||.+||..+.++|||||+||++||+||.+|+++|++
T Consensus         2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~   59 (60)
T 2ql2_B            2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS   59 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999999999999999999999999999999999999999975
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 285
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 9e-15
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 2e-14
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 7e-14
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 3e-13
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 6e-13
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 1e-12
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 1e-09
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 0.003
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.7 bits (160), Expect = 9e-15
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 170 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 229
               RR  A  +ERRR   +N AF  L+    + P + +L K++ LR A  YI  L  +L
Sbjct: 8   TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALL 66

Query: 230 E 230
            
Sbjct: 67  R 67
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.65
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.49
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.45
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.38
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.31
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 98.54
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.1e-16  Score=118.13  Aligned_cols=60  Identities=35%  Similarity=0.568  Sum_probs=55.3

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcchHHhhHHHHHHHHHHHHHHhh
Q psy2365         171 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET  231 (285)
Q Consensus       171 ~~~RR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~  231 (285)
                      ...+|.+||.+||+|+..||++|+.|+..||..+ .+|++|++||+.||+||.+|+++|++
T Consensus         9 ~~~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~-~~k~sK~~iL~~Ai~YI~~Lq~~l~e   68 (68)
T d1mdya_           9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            4578999999999999999999999999999865 46999999999999999999998863
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure