Psyllid ID: psy2388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK
Secondary Structure (PSIPRED)
ccccEEEEcccccccccccccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHcccEEcccccccccccccEEEccccccccccccHHHHHHHHHHHHccccEEEccccccccEEEEEccccHHHHHHHHHccccEEEEccccccHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccEEccccccEcccHHHHHHHHHHcccEEEEEcccccccccHccHHHHHHHccccEccccccccccEEEcccccccccccccccHHHHHHHHHHHHccccEEEcccccccEEEEEEcccHHHHHHHHHHccccEEEEEEEccccccccc
Coil and Loop (DISEMBL)
MNADAILVHhgyfwkgensnivgIKKKRLEQLIINKINLYayhlpldmhpklgnnAQLAKILNFSCtrrfsknnigwigkiinlkrynfkkiITIKDLFHHITrkigkkpivigdlNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK
Flexible Loop (DISEMBL)
MNADAIlvhhgyfwkgensnIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRfsknnigwigkiinlkrynfKKIITIKDLFhhitrkigkkpivigdLNKKIYEIGWCTGAAQNLLTDAINEGVTAYisgeisestkknlk
Low Complexity Region (SEG)
MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSknnigwigkiinLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK
Disordered region (IsUnstruct)
****AILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS************
Disordered Region (DISOPRED)
MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK
Disordered Region (DISEMBL)
MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI*********
Disordered Region (DISPRO)
MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEIS********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q8XVA0	248	UPF0135 protein RSc2931 O	yes	N/A	0.918	0.588	0.454	5e-39
Q9HVX2	252	UPF0135 protein PA4445 OS	yes	N/A	0.924	0.583	0.437	6e-34
Q9JXG9	249	UPF0135 protein NMB2054 O	yes	N/A	0.899	0.574	0.443	4e-33
Q9JWG6	249	UPF0135 protein NMA0382 O	yes	N/A	0.899	0.574	0.443	5e-33
P0AFP6	247	UPF0135 protein YbgI OS=E	N/A	N/A	0.899	0.578	0.416	9e-31
P0AFP7	247	UPF0135 protein YbgI OS=E	yes	N/A	0.899	0.578	0.416	9e-31
P0AFP8	247	UPF0135 protein YbgI OS=E	N/A	N/A	0.899	0.578	0.416	9e-31
Q9CP72	251	UPF0135 protein PM0183 OS	yes	N/A	0.924	0.585	0.448	9e-31
P67270	247	UPF0135 protein YbgI OS=S	yes	N/A	0.899	0.578	0.416	1e-30
P67271	247	UPF0135 protein YbgI OS=S	N/A	N/A	0.899	0.578	0.416	1e-30

>sp|Q8XVA0|Y2931_RALSO UPF0135 protein RSc2931 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc2931 PE=3 SV=1

 Score =  159 bits (403), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 98/154 (63%), Gaps = 8/154 (5%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADAILVHHGYFWKGE++ ++G K  RL+QL+ + +NL+AYHLPLD HP LGNNAQL  
Sbjct: 55  VRADAILVHHGYFWKGEDARVIGQKHARLKQLLAHDVNLFAYHLPLDAHPTLGNNAQLGA 114

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKI 120
           +L    T RF  + +GWIG +         +  T+      +  ++ + P+VIG  ++ +
Sbjct: 115 LLGIQPTGRFGDDELGWIGTL--------PEATTLGAFAEVVAARLDRMPLVIGGADRPV 166

Query: 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           + IGWCTG AQ     A++ GV  Y+SGE SE T
Sbjct: 167 HTIGWCTGGAQGWFDAAVSAGVDVYLSGEASEQT 200

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q9HVX2|Y4445_PSEAE UPF0135 protein PA4445 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA4445 PE=3 SV=1

 Score =  142 bits (359), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 6/153 (3%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
           +AD +LVHHGYFWKGEN  +VG+K++RL+ L+ N I+L AYHLPLD+HP++GNN QLA+ 
Sbjct: 58  DADVVLVHHGYFWKGENPCVVGMKQRRLKTLLNNDISLLAYHLPLDLHPEVGNNVQLARQ 117

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIY 121
           L F         N   I  + +L      + +   D   H+   +G++P+++ D  + I 
Sbjct: 118 LGFEVEGPLEPGNPRSIVLLGSL-----AEPMQPADFARHVRDALGREPLLV-DAGQPIR 171

Query: 122 EIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            I WCTG AQ  +  AI  GV AY++GE+SE T
Sbjct: 172 RIAWCTGGAQGYIDQAIAAGVDAYLTGEVSEQT 204

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

>sp|Q9JXG9|Y2054_NEIMB UPF0135 protein NMB2054 OS=Neisseria meningitidis serogroup B (strain MC58) GN=NMB2054 PE=3 SV=1

 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 8/151 (5%)

Query: 3   ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 62
           AD +LVHHG FWK E   + G KK+R+  L+ + IN+  YHLPLD HP LGNNAQLA  L
Sbjct: 58  ADLLLVHHGMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLDAHPTLGNNAQLADRL 117

Query: 63  NFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYE 122
            F+  +RF + N+        L   + K+  T+  L  HI   + +KP+VIG+  ++I  
Sbjct: 118 GFATEKRFGEQNL--------LNSGSLKQAKTLGALAAHIETVLQRKPVVIGNPEREIRR 169

Query: 123 IGWCTGAAQNLLTDAINEGVTAYISGEISES 153
           + WC+G AQ     AI+EGV  Y++GEISE+
Sbjct: 170 VAWCSGGAQGFFQTAIDEGVDLYLTGEISEA 200

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

>sp|Q9JWG6|Y382_NEIMA UPF0135 protein NMA0382 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=NMA0382 PE=3 SV=1

 Score =  139 bits (351), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 92/151 (60%), Gaps = 8/151 (5%)

Query: 3   ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 62
           AD +LVHHG FWK E   + G KK+R+  L+ + IN+  YHLPLD HP LGNNAQLA  L
Sbjct: 58  ADLLLVHHGMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLDAHPTLGNNAQLADRL 117

Query: 63  NFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYE 122
            F+  +RF + N+        L   + K+  T+  L  HI   + +KP+VIG   ++I  
Sbjct: 118 GFATEKRFGEQNL--------LNSGSLKQAKTLGALAAHIETVLQRKPVVIGKPEREIRR 169

Query: 123 IGWCTGAAQNLLTDAINEGVTAYISGEISES 153
           + WC+G AQ     AI+EGV  Y++GEISE+
Sbjct: 170 VAWCSGGAQGFFQTAIDEGVDLYLTGEISEA 200

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

>sp|P0AFP6|YBGI_ECOLI UPF0135 protein YbgI OS=Escherichia coli (strain K12) GN=ybgI PE=1 SV=1

 Score =  132 bits (332), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 13/156 (8%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADA++VHHGYFWKGE+  I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA 
Sbjct: 55  LGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRY-NFKKIITIKDLFHHITRKIGKKPIVIGDLNKK 119
           +L  +            +G+I  L  +      +   +L   I  ++G+KP+  GD   +
Sbjct: 115 LLGITV-----------MGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPE 163

Query: 120 IYE-IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           + + + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 164 VVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AFP7|YBGI_ECOL6 UPF0135 protein YbgI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybgI PE=3 SV=1

 Score =  132 bits (332), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 13/156 (8%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADA++VHHGYFWKGE+  I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA 
Sbjct: 55  LGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRY-NFKKIITIKDLFHHITRKIGKKPIVIGDLNKK 119
           +L  +            +G+I  L  +      +   +L   I  ++G+KP+  GD   +
Sbjct: 115 LLGITV-----------MGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPE 163

Query: 120 IYE-IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           + + + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 164 VVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P0AFP8|YBGI_ECO57 UPF0135 protein YbgI OS=Escherichia coli O157:H7 GN=ybgI PE=3 SV=1

 Score =  132 bits (332), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 13/156 (8%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADA++VHHGYFWKGE+  I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA 
Sbjct: 55  LGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRY-NFKKIITIKDLFHHITRKIGKKPIVIGDLNKK 119
           +L  +            +G+I  L  +      +   +L   I  ++G+KP+  GD   +
Sbjct: 115 LLGITV-----------MGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPE 163

Query: 120 IYE-IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           + + + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 164 VVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q9CP72|Y183_PASMU UPF0135 protein PM0183 OS=Pasteurella multocida (strain Pm70) GN=PM0183 PE=3 SV=1

 Score =  132 bits (332), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 9/156 (5%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
            NADAILVHHGYFWK EN  I G+K KR++ L++N INLY YHLPLD+HP+LGNNA+LA 
Sbjct: 55  QNADAILVHHGYFWKSENPCIRGMKGKRIKTLLVNDINLYGYHLPLDVHPELGNNARLAA 114

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLF-HHITRKIGKKPIVIGD-LNK 118
           +L     +   +         +++  Y   K     D F   I + + +KP+V  D    
Sbjct: 115 LLEIEDLQPLEQGT-------VSIPVYGTLKTPLTSDAFAARIEQVLKRKPLVCSDNAPH 167

Query: 119 KIYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            I  +G CTG  Q+ +  A N+GV A+ISGE+SE T
Sbjct: 168 LIRTVGICTGGGQSYIDLAANQGVDAFISGEVSEQT 203

Pasteurella multocida (strain Pm70) (taxid: 272843)

>sp|P67270|YBGI_SALTY UPF0135 protein YbgI OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ybgI PE=3 SV=1

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 13/156 (8%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADA++VHHGYFWKGE+  I G+K++RL+ L+ N INLY +HLPLD HP+LGNNAQLA 
Sbjct: 55  LQADAVIVHHGYFWKGESPVIRGMKRRRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRY-NFKKIITIKDLFHHITRKIGKKPIVIGDLNKK 119
           +L  +             G+I  L  +      +   +L   I  ++G+KP+  GD   +
Sbjct: 115 LLGITVK-----------GEIEPLVPWGELSMPVPGLELASWIEARLGRKPLWCGDTGPE 163

Query: 120 -IYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            +  + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 164 NVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P67271|YBGI_SALTI UPF0135 protein YbgI OS=Salmonella typhi GN=ybgI PE=3 SV=1

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 13/156 (8%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADA++VHHGYFWKGE+  I G+K++RL+ L+ N INLY +HLPLD HP+LGNNAQLA 
Sbjct: 55  LQADAVIVHHGYFWKGESPVIRGMKRRRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRY-NFKKIITIKDLFHHITRKIGKKPIVIGDLNKK 119
           +L  +             G+I  L  +      +   +L   I  ++G+KP+  GD   +
Sbjct: 115 LLGITVK-----------GEIEPLVPWGELSMPVPGLELASWIEARLGRKPLWCGDTGPE 163

Query: 120 -IYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            +  + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 164 NVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

Salmonella typhi (taxid: 90370)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
409407891	263	hypothetical protein GWL_34960 [Herbaspi	0.924	0.558	0.535	1e-44
415911020	213	NIF3 domain containing protein [Herbaspi	0.924	0.690	0.522	6e-43
399019274	256	dinuclear metal center protein, YbgI/SA1	0.937	0.582	0.5	1e-42
300313337	254	hypothetical protein Hsero_4051 [Herbasp	0.924	0.578	0.516	1e-42
340785724	279	hypothetical protein CFU_0530 [Collimona	0.924	0.526	0.503	5e-41
237749401	259	conserved hypothetical protein [Oxalobac	0.930	0.571	0.5	5e-41
134096210	260	hypothetical protein HEAR3055 [Herminiim	0.924	0.565	0.503	7e-41
237747245	255	conserved hypothetical protein [Oxalobac	0.930	0.580	0.551	1e-40
152981340	255	hypothetical protein mma_3274 [Janthinob	0.924	0.576	0.490	2e-40
398835261	254	dinuclear metal center protein, YbgI/SA1	0.911	0.570	0.529	6e-39

>gi|409407891|ref|ZP_11256342.1| hypothetical protein GWL_34960 [Herbaspirillum sp. GW103] gi|386433642|gb|EIJ46468.1| hypothetical protein GWL_34960 [Herbaspirillum sp. GW103]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 112/153 (73%), Gaps = 6/153 (3%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
            ADAILVHHGYFW+GE+  ++G K++RL+ L+ + INL+ YHLPLD HP+LGNNAQLAK 
Sbjct: 69  QADAILVHHGYFWRGEDMRVIGQKQRRLKLLLAHDINLFGYHLPLDCHPELGNNAQLAKR 128

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIY 121
           L+F  T RF +N+IGWIG+ +         + T  DL   I +++G+ P++IGD ++ I 
Sbjct: 129 LDFDATGRFGENDIGWIGRCLA------PSVKTAADLAQLIEKRLGRTPLLIGDPHQSIA 182

Query: 122 EIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           ++ WCTGAAQ +L +AI+ G TAYISGEISE T
Sbjct: 183 QVAWCTGAAQGMLGEAIDAGATAYISGEISEPT 215

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|415911020|ref|ZP_11553341.1| NIF3 domain containing protein [Herbaspirillum frisingense GSF30] gi|407762334|gb|EKF71205.1| NIF3 domain containing protein [Herbaspirillum frisingense GSF30]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 80/153 (52%), Positives = 110/153 (71%), Gaps = 6/153 (3%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
            ADAILVHHGYFW+GE+  ++G K++RL+ L+ + INL+ YHLPLD HP+LGNNAQLAK 
Sbjct: 19  QADAILVHHGYFWRGEDMRVIGQKQRRLKLLLAHDINLFGYHLPLDSHPELGNNAQLAKR 78

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIY 121
           L+F  T RF +N+IGWIG      R +   + T  DL   I +++G+ P++IGD  + + 
Sbjct: 79  LDFEATGRFGENDIGWIG------RCHASSVKTAADLVMLIEKRLGRMPLLIGDPQQPVG 132

Query: 122 EIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           ++ WCTGAAQ +L +AI+ G + YISGEISE T
Sbjct: 133 KVAWCTGAAQGMLGEAIDAGASVYISGEISEPT 165

Source: Herbaspirillum frisingense GSF30

Species: Herbaspirillum frisingense

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399019274|ref|ZP_10721423.1| dinuclear metal center protein, YbgI/SA1388 family [Herbaspirillum sp. CF444] gi|398098421|gb|EJL88708.1| dinuclear metal center protein, YbgI/SA1388 family [Herbaspirillum sp. CF444]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 109/154 (70%), Gaps = 5/154 (3%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADAILVHHGYFW+GE++ ++G ++KRL+ L+ + INL+AYHLPLD HP+LGNNAQLA+
Sbjct: 60  LKADAILVHHGYFWRGEDARVIGTRQKRLKALLTHDINLFAYHLPLDGHPELGNNAQLAR 119

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKI 120
            L+     RF  + +GW+G +          + T+ DL   I R++G++P++IGD ++ I
Sbjct: 120 QLSLVGEERFCDDKLGWLGSV-----QAEANVATVGDLARLIERRLGRQPLLIGDPDQAI 174

Query: 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            ++GWCTG AQ  L DAI  G + YISGEISE T
Sbjct: 175 GKVGWCTGGAQGFLGDAIAAGASVYISGEISEQT 208

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300313337|ref|YP_003777429.1| hypothetical protein Hsero_4051 [Herbaspirillum seropedicae SmR1] gi|300076122|gb|ADJ65521.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 108/153 (70%), Gaps = 6/153 (3%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
            ADAILVHHGYFW+GE+  ++G K++RL+ L+ N INL+ YHLPLD HP+LGNNAQLA+ 
Sbjct: 60  QADAILVHHGYFWRGEDMRVIGQKQRRLKLLLSNDINLFGYHLPLDSHPELGNNAQLARR 119

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIY 121
           L+F  T RF  N+IGW+G      R +   + T  DL   I +++G+ P++IGD  + + 
Sbjct: 120 LDFDATGRFGDNDIGWLG------RCHAPSVKTAADLAMLIEKRLGRMPLLIGDPQQAVG 173

Query: 122 EIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           ++ WCTGAAQ +L +AI  G + YISGEISE T
Sbjct: 174 QVAWCTGAAQGMLGEAIEAGASVYISGEISEPT 206

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340785724|ref|YP_004751189.1| hypothetical protein CFU_0530 [Collimonas fungivorans Ter331] gi|340550991|gb|AEK60366.1| hypothetical protein CFU_0530 [Collimonas fungivorans Ter331]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 108/153 (70%), Gaps = 6/153 (3%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
            ADAILVHHGYFW+GE++ +VG K KRL+ L+ + INL+AYHLPLD HP+ GNN QLA+ 
Sbjct: 85  GADAILVHHGYFWRGEDARVVGPKHKRLKLLLAHDINLFAYHLPLDAHPEFGNNVQLAQQ 144

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIY 121
           L  +   RF  +++GW+G  ++       ++ T+ DL + I R++ + P++IGD ++ + 
Sbjct: 145 LGLAPHGRFGDDSLGWLGSAVD------PQVSTVGDLANVIERRLQRAPVLIGDPSQPLG 198

Query: 122 EIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           +I WCTGAAQ+LL DAI  G   YISGEISE T
Sbjct: 199 QIAWCTGAAQSLLGDAIAAGAGVYISGEISEPT 231

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|237749401|ref|ZP_04579881.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380763|gb|EEO30854.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 111/154 (72%), Gaps = 6/154 (3%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           ++AD +LVHHGYFW+ EN  IVG K+KR+  L+ N INL AYHLPLD HP+LGNN QLAK
Sbjct: 64  LHADTLLVHHGYFWRNENECIVGPKQKRIRLLLQNNINLIAYHLPLDCHPELGNNVQLAK 123

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKI 120
           +L+F  T RF +N++GW+G+++N        I T+ +L   I +++ +KP+++G+  +K+
Sbjct: 124 VLDFRPTGRFGENDLGWLGQMMN------PGITTVGELADMIEKRLNRKPLLVGNPQQKL 177

Query: 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             IGWCTGAAQ+LL DA     + ++SGE+SE T
Sbjct: 178 ETIGWCTGAAQDLLPDAAMNNASVFLSGEVSERT 211

Source: Oxalobacter formigenes OXCC13

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134096210|ref|YP_001101285.1| hypothetical protein HEAR3055 [Herminiimonas arsenicoxydans] gi|133740113|emb|CAL63164.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 107/153 (69%), Gaps = 6/153 (3%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
            ADAILVHHGYFW+GE++ ++G K  RL+ L+ + +NL+AYHLPLDMH + GNNAQLA+ 
Sbjct: 66  GADAILVHHGYFWRGEDARVIGQKHGRLKLLLAHDVNLFAYHLPLDMHAEFGNNAQLAQR 125

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIY 121
           L      RF ++++GW+G + +        I T+ DL   I R++G+ P++IGD  +K+ 
Sbjct: 126 LGLLAEARFGEDDLGWLGTVAD------ASIATVGDLALLIERQLGRVPLLIGDPAQKLG 179

Query: 122 EIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           + GWCTGAAQ+LL DAI  G   Y+SGEISE T
Sbjct: 180 KAGWCTGAAQSLLGDAIAAGANVYLSGEISEPT 212

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|237747245|ref|ZP_04577725.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229378596|gb|EEO28687.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 112/154 (72%), Gaps = 6/154 (3%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           +NAD +LVHHGYFW+ EN  I G K+KR+++L+ + INL AYHLPLD HP+LGNN QLAK
Sbjct: 60  LNADTLLVHHGYFWRNENECITGPKQKRIKKLLTHDINLLAYHLPLDCHPELGNNVQLAK 119

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKI 120
           +LNF  T RF +N +GW+GK  +       +I+T+ +L   I  K+G+KP+VIG+  KK+
Sbjct: 120 LLNFGTTGRFGENELGWLGKAAD------PEIVTVANLAKLIETKLGRKPLVIGNPAKKL 173

Query: 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             IGWC+GAAQ+LL  A   G TAY+SGEISE T
Sbjct: 174 GNIGWCSGAAQDLLPAAAQAGATAYLSGEISERT 207

Source: Oxalobacter formigenes HOxBLS

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152981340|ref|YP_001354964.1| hypothetical protein mma_3274 [Janthinobacterium sp. Marseille] gi|151281417|gb|ABR89827.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 104/153 (67%), Gaps = 6/153 (3%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
            ADAILVHHGYFW+GE+  ++G K +RL+ L+ + +NL+AYHLPLDMH + GNNAQLA  
Sbjct: 61  GADAILVHHGYFWRGEDMRVIGQKHQRLKTLLTHDVNLFAYHLPLDMHAEFGNNAQLAAR 120

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIY 121
           L      RF+++++GW+G+  N        + T+ +L   I + + +KP++IGD  +K+ 
Sbjct: 121 LGLQGESRFAEDDLGWLGRSTN------PAVTTVGELAQEIEKSLQRKPLLIGDPAQKLG 174

Query: 122 EIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            IGWCTGAAQ  L DAI  G   Y+SGEISE T
Sbjct: 175 AIGWCTGAAQGFLGDAIAAGAQVYLSGEISEPT 207

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398835261|ref|ZP_10592626.1| dinuclear metal center protein, YbgI/SA1388 family [Herbaspirillum sp. YR522] gi|398216836|gb|EJN03377.1| dinuclear metal center protein, YbgI/SA1388 family [Herbaspirillum sp. YR522]

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 104/151 (68%), Gaps = 6/151 (3%)

Query: 4   DAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILN 63
           DA+LVHHGYFW+GE+  +VGI+++RL  L+ N INL+AYHLPLD HP+LGNNAQLA+ L+
Sbjct: 62  DAVLVHHGYFWRGEDPRVVGIRQRRLRLLLANDINLFAYHLPLDAHPQLGNNAQLARQLD 121

Query: 64  FSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEI 123
                RF  N++GW G      R     I T  DL   I +++G+ P++IGD  + + +I
Sbjct: 122 LLPEGRFGDNDLGWWG------RSGMAAIKTAADLAALIEKRLGRAPLLIGDPQQPLGQI 175

Query: 124 GWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            WCTGAAQ +L DAI  G  AYISGEISE T
Sbjct: 176 AWCTGAAQGMLDDAIAAGANAYISGEISEPT 206

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
UNIPROTKB|P0AFP6	247	ybgI "conserved metal-binding	0.408	0.263	0.615	2e-30
UNIPROTKB|Q48ED2	252	PSPPH_4134 "Uncharacterized pr	0.918	0.579	0.414	3.1e-28
UNIPROTKB|Q483N5	252	CPS_2001 "Putative uncharacter	0.383	0.242	0.688	6.6e-28
TIGR_CMR|CPS_2001	252	CPS_2001 "conserved hypothetic	0.383	0.242	0.688	6.6e-28
UNIPROTKB|Q87WV9	252	PSPTO_4434 "Uncharacterized pr	0.918	0.579	0.407	8.2e-28
UNIPROTKB|Q9KQA7	252	VC_2093 "UPF0135 protein VC_20	0.930	0.587	0.435	8.2e-28
TIGR_CMR|VC_2093	252	VC_2093 "conserved hypothetica	0.930	0.587	0.435	8.2e-28
UNIPROTKB|Q4KI68	252	PFL_0934 "Uncharacterized prot	0.918	0.579	0.401	1.7e-27
UNIPROTKB|Q8EDX0	250	ybgI "Protein YbgI" [Shewanell	0.930	0.592	0.383	5.9e-25
TIGR_CMR|SO_2621	250	SO_2621 "conserved hypothetica	0.930	0.592	0.383	5.9e-25

UNIPROTKB|P0AFP6 ybgI "conserved metal-binding protein" [Escherichia coli K-12 (taxid:83333)]

 Score = 230 (86.0 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 40/65 (61%), Positives = 52/65 (80%)

Query:     1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
             + ADA++VHHGYFWKGE+  I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA 
Sbjct:    55 LGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114

Query:    61 ILNFS 65
             +L  +
Sbjct:   115 LLGIT 119

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q48ED2 PSPPH_4134 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 63/152 (41%), Positives = 94/152 (61%)

Query:     3 ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 62
             AD ILVHHGYFWKGEN  +VG+K++RL+ L+ + I+L AYHLPLD+HP++GNN QLA+ L
Sbjct:    59 ADLILVHHGYFWKGENPCVVGMKQRRLKTLLKHDISLLAYHLPLDVHPEVGNNVQLARQL 118

Query:    63 NFSCTRRFSXXXXXXXXXXXXLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYE 122
             + +                  L      + +T +D    +   +G++P++I + ++ I  
Sbjct:   119 DITVEGPLDPENSRVVGLIGSLS-----EPMTPRDFARRVQDALGREPLLI-EGSQMIRR 172

Query:   123 IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             +GWCTG  QN +  A+ EGV  ++SGE SE T
Sbjct:   173 VGWCTGGGQNYIDQAVLEGVDLFLSGEASEQT 204

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q483N5 CPS_2001 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 233 (87.1 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 42/61 (68%), Positives = 51/61 (83%)

Query:     3 ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 62
             ADAILVHHGYFWK E+  I G+K  R++ L++N INL+AYHLPLD+HP LGNNAQLAK+ 
Sbjct:    57 ADAILVHHGYFWKNESYVIRGMKHDRIKALLLNDINLFAYHLPLDIHPTLGNNAQLAKLF 116

Query:    63 N 63
             N
Sbjct:   117 N 117

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_2001 CPS_2001 "conserved hypothetical protein TIGR00486" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 233 (87.1 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 42/61 (68%), Positives = 51/61 (83%)

Query:     3 ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 62
             ADAILVHHGYFWK E+  I G+K  R++ L++N INL+AYHLPLD+HP LGNNAQLAK+ 
Sbjct:    57 ADAILVHHGYFWKNESYVIRGMKHDRIKALLLNDINLFAYHLPLDIHPTLGNNAQLAKLF 116

Query:    63 N 63
             N
Sbjct:   117 N 117

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q87WV9 PSPTO_4434 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 62/152 (40%), Positives = 93/152 (61%)

Query:     3 ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 62
             AD ILVHHGYFWKGEN  +VG+K++RL+ L+ + I+L AYHLPLD+HP++GNN QLA+ L
Sbjct:    59 ADLILVHHGYFWKGENPCVVGMKQRRLKTLLKHDISLLAYHLPLDVHPEVGNNVQLARQL 118

Query:    63 NFSCTRRFSXXXXXXXXXXXXLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYE 122
             + +                  L      + +T +D    +   +G++P++I + ++ I  
Sbjct:   119 DITVEGPLDPENARVVGLIGSLS-----EPMTARDFARRVQDALGREPLLI-EGSQMIRR 172

Query:   123 IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             +GWCTG  Q  +  A+ EGV  ++SGE SE T
Sbjct:   173 VGWCTGGGQGYIDQAVLEGVDLFLSGEASEQT 204

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KQA7 VC_2093 "UPF0135 protein VC_2093" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 68/156 (43%), Positives = 93/156 (59%)

Query:     1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
             + ADA+LVHHGYFWK E   I G+K +R+  LI N +NLYAYHLPLD+HP+LGNNAQLA+
Sbjct:    55 LKADALLVHHGYFWKNEPEAIRGMKGRRIRTLIQNDLNLYAYHLPLDIHPQLGNNAQLAQ 114

Query:    61 ILNFSCTRRFSXXXXXXXXXXXXLKRYNFKKIITIKDLFHHITRKIGKKPIVIG-DLNKK 119
              L                         +F + +T ++L H I + + + P+ I  D   K
Sbjct:   115 RLGICVDGGLEGHPQSVAMFG------HFLQPLTGEELAHRIGQVLNRTPLHIAPDQADK 168

Query:   120 IYE-IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             + E +GWCTG  Q+ +  A + G+ A+ISGEISE T
Sbjct:   169 LIETVGWCTGGGQDYIELAASRGLDAFISGEISERT 204

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_2093 VC_2093 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 68/156 (43%), Positives = 93/156 (59%)

Query:     1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
             + ADA+LVHHGYFWK E   I G+K +R+  LI N +NLYAYHLPLD+HP+LGNNAQLA+
Sbjct:    55 LKADALLVHHGYFWKNEPEAIRGMKGRRIRTLIQNDLNLYAYHLPLDIHPQLGNNAQLAQ 114

Query:    61 ILNFSCTRRFSXXXXXXXXXXXXLKRYNFKKIITIKDLFHHITRKIGKKPIVIG-DLNKK 119
              L                         +F + +T ++L H I + + + P+ I  D   K
Sbjct:   115 RLGICVDGGLEGHPQSVAMFG------HFLQPLTGEELAHRIGQVLNRTPLHIAPDQADK 168

Query:   120 IYE-IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             + E +GWCTG  Q+ +  A + G+ A+ISGEISE T
Sbjct:   169 LIETVGWCTGGGQDYIELAASRGLDAFISGEISERT 204

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q4KI68 PFL_0934 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 61/152 (40%), Positives = 91/152 (59%)

Query:     3 ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 62
             AD +LVHHGYFWKGEN  I G+K++RL+ L+ + I+L AYHLPLD+HP++GNN QLA+ L
Sbjct:    59 ADLVLVHHGYFWKGENPCITGMKQRRLKTLLKHDISLLAYHLPLDLHPEVGNNVQLARQL 118

Query:    63 NFSCTRRFSXXXXXXXXXXXXLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYE 122
             + +                  L      + +T +D    +   +G++P++I + ++ I  
Sbjct:   119 DITVEGPLDPENPKVVGLVGSLS-----EPMTARDFARRVQEAMGREPLLI-EGSEMIRR 172

Query:   123 IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             +GWCTG  Q  +  A+  GV  Y+SGE SE T
Sbjct:   173 VGWCTGGGQGYIDQAVQAGVDLYLSGEASEQT 204

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EDX0 ybgI "Protein YbgI" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 59/154 (38%), Positives = 87/154 (56%)

Query:     1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
             + ADAILVHHG+FWK E   I G+K++R++ L+ + INL+ YHLPLD HP LGNNA L +
Sbjct:    55 LKADAILVHHGFFWKSEPEVITGMKQRRIKALLAHDINLFGYHLPLDAHPMLGNNATLGR 114

Query:    61 ILNFSCTRRFSXXXXXXXXXXXXLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKI 120
              L                     + R      ++  +    +   +G+ P+ IG+ + +I
Sbjct:   115 KLGIL------DAEAVEDVAQGLVWRGKLDLPMSASEFAAMLAEVLGRDPLHIGESSDEI 168

Query:   121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
               + WCTG AQ+ +  A + GV A+ISGE+SE T
Sbjct:   169 QYLAWCTGGAQDYIDVAASLGVDAFISGEVSERT 202

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2621 SO_2621 "conserved hypothetical protein TIGR00486" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 59/154 (38%), Positives = 87/154 (56%)

Query:     1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
             + ADAILVHHG+FWK E   I G+K++R++ L+ + INL+ YHLPLD HP LGNNA L +
Sbjct:    55 LKADAILVHHGFFWKSEPEVITGMKQRRIKALLAHDINLFGYHLPLDAHPMLGNNATLGR 114

Query:    61 ILNFSCTRRFSXXXXXXXXXXXXLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKI 120
              L                     + R      ++  +    +   +G+ P+ IG+ + +I
Sbjct:   115 KLGIL------DAEAVEDVAQGLVWRGKLDLPMSASEFAAMLAEVLGRDPLHIGESSDEI 168

Query:   121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
               + WCTG AQ+ +  A + GV A+ISGE+SE T
Sbjct:   169 QYLAWCTGGAQDYIDVAASLGVDAFISGEVSERT 202

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	159
PRK10799	247	PRK10799, PRK10799, metal-binding protein; Provisi	4e-43
COG0327	250	COG0327, COG0327, Uncharacterized conserved protei	5e-35
pfam01784	237	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)	4e-33
TIGR00486	249	TIGR00486, YbgI_SA1388, dinuclear metal center pro	3e-32

>gnl|CDD|182741 PRK10799, PRK10799, metal-binding protein; Provisional

 Score =  142 bits (360), Expect = 4e-43
 Identities = 66/154 (42%), Positives = 93/154 (60%), Gaps = 13/154 (8%)

Query: 3   ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 62
           ADA++VHHGYFWKGE+  I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA +L
Sbjct: 57  ADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALL 116

Query: 63  NFSCTRRFSKNNIGWIGKIINLKRYN-FKKIITIKDLFHHITRKIGKKPIVIGDLN-KKI 120
                       I  +G+I  L  +      +   +L   I  ++G+KP+  GD   + +
Sbjct: 117 -----------GITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVV 165

Query: 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 166 QRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

Length = 247

>gnl|CDD|223404 COG0327, COG0327, Uncharacterized conserved protein [Function unknown]

 Score =  122 bits (307), Expect = 5e-35
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)

Query: 1   MNADAILVHHG-YFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLA 59
           + AD ++VHH   FW  ++  I G K KR++ LI N INLYA H  LD HP+ GN+A  A
Sbjct: 56  LGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPEGGNDALAA 115

Query: 60  KILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGDLNK 118
            +L       F    +G +G          K+  T+++L   I  K+G+ P+ V+ D ++
Sbjct: 116 ALLGAEELPPF-GEGLGRVG--------ELKEPTTLEELAERIKAKLGRPPLRVVKDGSE 166

Query: 119 KIYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           +I  +  C+G+ Q  L++A  EGV AYI+G++S  T
Sbjct: 167 EIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHT 202

Length = 250

>gnl|CDD|216697 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)

 Score =  116 bits (294), Expect = 4e-33
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 1   MNADAILVHHGYFWKGENSNI-VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLA 59
             AD I+ HH   +K          K +R+ +LI N I+LY+ H  LD  P  G N  LA
Sbjct: 52  NGADLIITHHPLIFKPLKRITGDDPKGRRILKLIKNNISLYSAHTNLDAAPG-GVNDWLA 110

Query: 60  KILNFSCTRRFSKN-----NIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VI 113
           ++L          +      +G IG++         + I++++L   +  ++G + + V+
Sbjct: 111 ELLGLESIEPLEPSVSEGEGLGRIGEL--------PEPISLEELAKRVKERLGLEGVRVV 162

Query: 114 GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           GDL+K I ++  C G+  +L+ +A  +G    I+GE+    
Sbjct: 163 GDLDKPIKKVAICGGSGGSLIEEAKAKGADLLITGELKHHD 203

This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown. Length = 237

>gnl|CDD|213534 TIGR00486, YbgI_SA1388, dinuclear metal center protein, YbgI/SA1388 family

 Score =  114 bits (288), Expect = 3e-32
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
            AD I+ HH   WK     I GIK  RL+ L+ N I+LY+ H  LD H   GNN  LA+ 
Sbjct: 57  GADLIITHHPLIWKPLKRLIRGIKPGRLKILLQNDISLYSAHTNLDAHD-GGNNDALARA 115

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNK-KI 120
           L     + F    +G +G+        FK  I   +    I + +  KP+++       +
Sbjct: 116 LGLENPKEFEDYGLGRVGE--------FKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYV 167

Query: 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISESTK 155
            ++   +G+  + +  A+ EGV AYI+G++S  T 
Sbjct: 168 KKVAVVSGSGLSFIMKALREGVDAYITGDLSHHTA 202

The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members [Unknown function, General]. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
TIGR00486	249	YbgI_SA1388 dinuclear metal center protein, YbgI/S	100.0
PF01784	241	NIF3: NIF3 (NGG1p interacting factor 3); InterPro:	100.0
PRK10799	247	metal-binding protein; Provisional	100.0
COG0327	250	Uncharacterized conserved protein [Function unknow	100.0
KOG4131|consensus	272		99.97
TIGR00486	249	YbgI_SA1388 dinuclear metal center protein, YbgI/S	96.49
PF01784	241	NIF3: NIF3 (NGG1p interacting factor 3); InterPro:	95.66
PRK10799	247	metal-binding protein; Provisional	94.69
COG0327	250	Uncharacterized conserved protein [Function unknow	90.33
PRK00124	151	hypothetical protein; Validated	82.5
COG1671	150	Uncharacterized protein conserved in bacteria [Fun	81.96

>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family

Probab=100.00  E-value=9.1e-47  Score=305.04  Aligned_cols=150  Identities=32%  Similarity=0.555  Sum_probs=137.2

Q ss_pred             CCccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEE
Q psy2388           1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGK   80 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~   80 (159)
                      ++|||||||||+||+|.++...+...+++++|+||||+|||+|||||++++ |+|++||+.|||++.+++.+.++|++|+
T Consensus        56 ~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~g~G~vg~  134 (249)
T TIGR00486        56 LGADLIITHHPLIWKPLKRLIRGIKPGRLKILLQNDISLYSAHTNLDAHDG-GNNDALARALGLENPKEFEDYGLGRVGE  134 (249)
T ss_pred             CCCCEEEEcCccccCCcccccCCCHHHHHHHHHHCCCeEEEeecchhcCCC-CHHHHHHHHcCCCccccccCCCceeEEE
Confidence            489999999999999987665554444499999999999999999999998 9999999999999988887678999999


Q ss_pred             EccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhccC
Q psy2388          81 IINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK  159 (159)
Q Consensus        81 ~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a~  159 (159)
                              +++|+|+++|++++++.|+++.+|+ ++.+++|+|||+|+|||++++++|.++|||+|||||++||++++|+
T Consensus       135 --------l~~~~~~~~~~~~vk~~l~~~~vr~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k~h~~~~A~  206 (249)
T TIGR00486       135 --------FKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGDLSHHTAHLAR  206 (249)
T ss_pred             --------CCCCCCHHHHHHHHHHHhCCCCEEEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecCCchHHHHHHH
Confidence                    9889999999999999999999998 6667899999999999999999999999999999999999998873

The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.

>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues

Probab=100.00  E-value=1.5e-46  Score=302.27  Aligned_cols=149  Identities=30%  Similarity=0.512  Sum_probs=132.4

Q ss_pred             CCccEEEEcCCCCccCCCCCc-cChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc------C
Q psy2388           1 MNADAILVHHGYFWKGENSNI-VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK------N   73 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~~-~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~------~   73 (159)
                      +||||||||||+||++.++.. .+++++++++|++|+|+||++|||||++++ |+|++||+.|||++.+++.+      .
T Consensus        52 ~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~~~~~~~  130 (241)
T PF01784_consen   52 KGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSAHTNLDAAPG-GVNDYLAKKLGLENIKPLDPSKSGEGY  130 (241)
T ss_dssp             TT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEESHHHHHSTT-SHHHHHHHHHTEEEEEEEEEEEEEEEE
T ss_pred             cCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEecccccccCc-CHHHHHHHHhCCCCccccccccccccc
Confidence            589999999999999986654 457899999999999999999999999999 99999999999999988864      3


Q ss_pred             CeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCc
Q psy2388          74 NIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISE  152 (159)
Q Consensus        74 ~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~  152 (159)
                      ++|++|+        +++|+|++||+++++++|+++.+|+ ++++++|+|||||+|||++++++|.+.|||+|||||++|
T Consensus       131 g~g~i~~--------l~~~~s~~el~~~vk~~l~~~~vr~~g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~  202 (241)
T PF01784_consen  131 GLGRIGE--------LPEPMSLEELAERVKEKLGLPGVRVVGDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKY  202 (241)
T ss_dssp             ECEEEEE--------EEEEEEHHHHHHHHHHHTTSS-EEEESCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--H
T ss_pred             eeeeEee--------cCCCCCHHHHHHHHHHHcCCCcEEecCCCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcH
Confidence            6788888        9989999999999999999999999 588999999999999999999999999999999999999


Q ss_pred             hhhhcc
Q psy2388         153 STKKNL  158 (159)
Q Consensus       153 ~~~~~a  158 (159)
                      |++++|
T Consensus       203 h~~~~a  208 (241)
T PF01784_consen  203 HDAQDA  208 (241)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.

>PRK10799 metal-binding protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=291.20  Aligned_cols=149  Identities=42%  Similarity=0.789  Sum_probs=134.1

Q ss_pred             CCccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEE
Q psy2388           1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGK   80 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~   80 (159)
                      ++|||||||||+||++.++...+++++++++|++++|+|||+|||||+++++|+|++||+.|||+.....  .++|.+|+
T Consensus        55 ~~~dlIitHHP~~~~~~~~~~~~~~~~~~~~li~~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~--~~~~~~g~  132 (247)
T PRK10799         55 LQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEI--EPLVPWGE  132 (247)
T ss_pred             CCCCEEEECCchhccCCCccccchHHHHHHHHHHCCCeEEEEecchhhCCCCCHHHHHHHHcCCCcccCc--CCceeeEE
Confidence            4899999999999999766667788999999999999999999999999966999999999999875443  35777888


Q ss_pred             EccccccccCCccCHHHHHHHHHhHhCCCcEEEcCC-CCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhccC
Q psy2388          81 IINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDL-NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK  159 (159)
Q Consensus        81 ~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~~~-~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a~  159 (159)
                              +++|+|+++|++++|+.|+++.+.+++. +++|+|||+|+|||++++++|.+.|||+|||||+|||++++|+
T Consensus       133 --------l~~~~s~~~l~~~vk~~l~~~~~~~~~~~~~~i~rVAi~~GsG~~~i~~a~~~gaD~~ITGd~k~h~~~~A~  204 (247)
T PRK10799        133 --------LTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAR  204 (247)
T ss_pred             --------CCCCcCHHHHHHHHHHHhCCCeEEECCCCCCcccEEEEECCchHHHHHHHHHcCCCEEEECCcchHHHHHHH
Confidence                    9889999999999999999997666655 5789999999999999999999999999999999999999873

>COG0327 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.1e-40  Score=266.47  Aligned_cols=150  Identities=36%  Similarity=0.573  Sum_probs=133.2

Q ss_pred             CCccEEEEcCCCCccCCCC-CccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEE
Q psy2388           1 MNADAILVHHGYFWKGENS-NIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIG   79 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~-~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig   79 (159)
                      .+||+||+|||++|.+.+. ..++++++++++|++++|++|++|||||++++ |.|+++++.|++....+..+.++|++|
T Consensus        56 ~~ad~ii~HHplif~~~~~~~~~~~~~~~i~~li~~~I~ly~~HtnlD~~~~-g~N~a~~~~l~~~~~~~~~~~~~g~~g  134 (250)
T COG0327          56 LGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPE-GGNDALAAALLGAEELPPFGEGLGRVG  134 (250)
T ss_pred             CCCCEEEEcCchhcCCCccccccchHHHHHHHHHhCCCeEEEcccccccccc-cccHHHHHHhcCcccccccccccceEE
Confidence            4799999999966666544 35778999999999999999999999999999 888888888777766655446789999


Q ss_pred             EEccccccccCCccCHHHHHHHHHhHhCCCcEEEc-CCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388          80 KIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG-DLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNL  158 (159)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~-~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a  158 (159)
                      +        +++++|+++|++++++.|+.+.++++ +.++.|+|||||+|||.+++.+|.++|+|+|||||++||+++.|
T Consensus       135 ~--------~~~~~~l~~l~~~i~~~l~~~~~~~~~~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~~~~~~~~a  206 (250)
T COG0327         135 E--------LKEPTTLEELAERIKAKLGRPPLRVVKDGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHTAHDA  206 (250)
T ss_pred             E--------eCCCCCHHHHHHHHHHHcCCCCEEEccCccccCceEEEEeCCChHHHHHHHHcCCCEEEECCCcHHHHHHH
Confidence            9        99999999999999999999999985 46889999999999999999999999999999999999999987


Q ss_pred             C
Q psy2388         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       207 ~  207 (250)
T COG0327         207 R  207 (250)
T ss_pred             H
Confidence            4

>KOG4131|consensus

Probab=99.97  E-value=1.9e-31  Score=211.04  Aligned_cols=144  Identities=22%  Similarity=0.322  Sum_probs=123.8

Q ss_pred             CCccEEEEcCCCCccCCCCCc-cChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc-------
Q psy2388           1 MNADAILVHHGYFWKGENSNI-VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK-------   72 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~~-~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~-------   72 (159)
                      ++|+.|+++||++|++.+++. ..++.+++.++++|||++||+||.+|+++. |+|+||++.++.+..+++.+       
T Consensus        65 k~~e~IvAYHP~IFr~~krIt~~~~~e~~vi~~~~ngiavySPHtA~Daa~~-gVNdwls~gIN~~~~~p~~~t~~gp~~  143 (272)
T KOG4131|consen   65 KNAESIVAYHPPIFRPLKRITKSYPQERKVIKAIANGIAVYSPHTAVDAAGG-GVNDWLSKGINANLSRPNDPTKNGPME  143 (272)
T ss_pred             hCCceeEeecCccccchhhhcccchHHHHHHHHHhcCceeecchhhhccccc-chhHHHHHhhhhhhcCCccccccCCCc
Confidence            479999999999999987765 447889999999999999999999999998 99999999999655555443       


Q ss_pred             --CCeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEEc--C---CCCceeEEEEEecCchHHHHHHHhcCCcEE
Q psy2388          73 --NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG--D---LNKKIYEIGWCTGAAQNLLTDAINEGVTAY  145 (159)
Q Consensus        73 --~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~--~---~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~  145 (159)
                        .|+||+.+        +..++++.++++++|+  +++.+|+.  .   .+..|++||+|+|||+++++.   .++|+|
T Consensus       144 ~~~G~gr~~e--------~~~~~~~~~~l~~ik~--~l~~v~val~~g~~~~~~i~~V~vcAgsg~svlk~---~~adly  210 (272)
T KOG4131|consen  144 ETIGYGREEE--------TKINLNVVEILKRIKR--GLSSVRVALAVGHTLESQIKKVAVCAGSGSSVLKG---VDADLY  210 (272)
T ss_pred             ccccccceee--------ccCcccHHHHHHHHHh--cCCeEEEeeccCCccccceeEEEEeeccCcceecc---ccccEE
Confidence              36777777        7878999999999998  78888872  2   356899999999999999876   479999


Q ss_pred             EEccCCchhhhcc
Q psy2388         146 ISGEISESTKKNL  158 (159)
Q Consensus       146 ITGe~k~~~~~~a  158 (159)
                      ||||++||+.++|
T Consensus       211 ~TGEmSHH~vL~~  223 (272)
T KOG4131|consen  211 ITGEMSHHDVLDA  223 (272)
T ss_pred             EeccccHHHHHHH
Confidence            9999999999876

>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family

Probab=96.49  E-value=0.0092  Score=48.33  Aligned_cols=55  Identities=18%  Similarity=0.360  Sum_probs=45.7

Q ss_pred             cCHHHHHHHHHhHhCCC--------cEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          93 ITIKDLFHHITRKIGKK--------PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        93 ~~~~~l~~~lk~~l~~~--------~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      |++.|+.+.+.+.+...        .+.+++.+++|+||++|-=.-.+.+++|.++|||++||
T Consensus         1 M~~~~i~~~le~~~p~~~a~~wDn~Gl~vg~~~~~v~~I~~alD~t~~vi~~Ai~~~~dlIit   63 (249)
T TIGR00486         1 MNLDELIQLINRFLPKELAEDGDNNGLQVGSGNEEVKKVVVAVDASESVADEAVRLGADLIIT   63 (249)
T ss_pred             CcHHHHHHHHHHhCCHHHhcCCCCCeeEecCCCcccCEEEEEecCCHHHHHHHHHCCCCEEEE
Confidence            45677888887776532        46667778899999999999999999999999999997

The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.

>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues

Probab=95.66  E-value=0.035  Score=44.65  Aligned_cols=38  Identities=18%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             cEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388         110 PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus       110 ~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      .+.+|+++++|+||++|-=...+.+++|.+.|||++||
T Consensus        22 Gl~vg~~~~~v~~V~~~ld~t~~vi~~A~~~~~dlIIt   59 (241)
T PF01784_consen   22 GLQVGDPEQEVKKVLVALDATPEVIEEAIEKGADLIIT   59 (241)
T ss_dssp             EEEES-SSSBESEEEEESS-SHHHHHHHHHTT-SEEEE
T ss_pred             ceEECcCccccCEEEEEEeCCHHHHHHHHHcCCCEEEE
Confidence            46778888999999999999999999999999999998

NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.

>PRK10799 metal-binding protein; Provisional

Probab=94.69  E-value=0.12  Score=41.70  Aligned_cols=53  Identities=21%  Similarity=0.223  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          94 TIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        94 ~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      ...|+.+.+.+.+..        ..+.++. .++|++|++|-=...+.+++|.++|||++||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~wd~~Gl~v~~-~~~v~~I~~alD~t~~vi~~A~~~~~dlIit   62 (247)
T PRK10799          2 KNTELEQLINEKLNSAAISDYAPNGLQVEG-RETVQKIVTGVTASQALLDEAVRLQADAVIV   62 (247)
T ss_pred             cHHHHHHHHHhhcCHhhhccCCCceeEeCC-cccccEEEEEeCCCHHHHHHHHHCCCCEEEE
Confidence            345666666666653        2344443 4689999999999999999999999999997

>COG0327 Uncharacterized conserved protein [Function unknown]

Probab=90.33  E-value=1.1  Score=36.35  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388         109 KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus       109 ~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      ..+.+++++++|+||+++-=.-.+.+++|.+.+||++|+
T Consensus        25 ~GLqv~~~~~~v~kV~~avd~t~~vi~~Ai~~~ad~ii~   63 (250)
T COG0327          25 NGLQVGGPLEEVKKVAVALDATLAVLDEAIELGADLLIV   63 (250)
T ss_pred             ceEEeCCCCcccceEEEEeeCCHHHHHHHHHCCCCEEEE
Confidence            356666668899999999999999999999999999987

>PRK00124 hypothetical protein; Validated

Probab=82.50  E-value=5.6  Score=30.11  Aligned_cols=59  Identities=14%  Similarity=0.207  Sum_probs=42.5

Q ss_pred             ccCHHHHHHHHHhHhCCCcEEEc--CC------CCceeEEEEEecCch--HHHHHHHhcCCcEEEEccCC
Q psy2388          92 IITIKDLFHHITRKIGKKPIVIG--DL------NKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEIS  151 (159)
Q Consensus        92 ~~~~~~l~~~lk~~l~~~~i~~~--~~------~~~i~rVai~~Gsg~--~~i~~a~~~~~D~~ITGe~k  151 (159)
                      .++..+.+.++.+.++++.+.+.  +.      ..-++.|-|-+|.-.  ..|-+..+.| |+.||.|+.
T Consensus         9 ACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~g-DiVIT~Di~   77 (151)
T PRK00124          9 ACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKG-DIVITQDYG   77 (151)
T ss_pred             CCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCC-CEEEeCCHH
Confidence            56799999999999999987764  32      123677777666654  4455555666 999999974

>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.96  E-value=6.6  Score=29.69  Aligned_cols=59  Identities=14%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             ccCHHHHHHHHHhHhCCCcEEEcCC------CCceeEEEEEecCch--HHHHHHHhcCCcEEEEccCC
Q psy2388          92 IITIKDLFHHITRKIGKKPIVIGDL------NKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEIS  151 (159)
Q Consensus        92 ~~~~~~l~~~lk~~l~~~~i~~~~~------~~~i~rVai~~Gsg~--~~i~~a~~~~~D~~ITGe~k  151 (159)
                      .+++.+++.++.+.+|++++.+.+.      ...|+.|-+-+|--.  +.|-+-.+.| |+.||-|+.
T Consensus        10 ACPVk~~i~r~A~r~~~~v~~Van~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g-DlVVT~Di~   76 (150)
T COG1671          10 ACPVKDEIYRVAERMGLKVTFVANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG-DLVVTADIP   76 (150)
T ss_pred             CCchHHHHHHHHHHhCCeEEEEeCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC-CEEEECchH
Confidence            5779999999999999998887321      245777777777654  4454544555 999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1nmp_A	247	Structural Genomics, Ybgi Protein, Unknown Function		3e-31
1nmo_A	247	Structural Genomics, Protein Ybgi, Unknown Function		6e-31
2yyb_A	242	Crystal Structure Of Ttha1606 From Thermus Thermoph		3e-11

>pdb|1NMP|A Chain A, Structural Genomics, Ybgi Protein, Unknown Function Length = 247

Iteration: 1
 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 90/155 (58%), Gaps = 11/155 (7%)
Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADA++VHHGYFWKGE+  I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA 
Sbjct: 55  LGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114
Query: 61  ILNFSCTRRFSXXXXXXXXXXXXLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKI 120
           +L  +                  +        +   +L   I  ++G+KP+  GD   ++
Sbjct: 115 LLGITVMGEIE----------PLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEV 164
Query: 121 YE-IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            + + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 165 VQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

>pdb|1NMO|A Chain A, Structural Genomics, Protein Ybgi, Unknown Function Length = 247

Iteration: 1
 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 89/155 (57%), Gaps = 11/155 (7%)
Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADA++VHHGYFWKGE+  I G K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA 
Sbjct: 55  LGADAVIVHHGYFWKGESPVIRGXKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114
Query: 61  ILNFSCTRRFSXXXXXXXXXXXXLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKI 120
           +L  +                  +        +   +L   I  ++G+KP+  GD   ++
Sbjct: 115 LLGITVXGEIE----------PLVPWGELTXPVPGLELASWIEARLGRKPLWCGDTGPEV 164
Query: 121 YE-IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            + + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 165 VQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

>pdb|2YYB|A Chain A, Crystal Structure Of Ttha1606 From Thermus Thermophilus Hb8 Length = 242

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
             D ++VHHG FW G+   IVG  K+RLE L    INLYA HLPLD H ++GNN  LA+ 
Sbjct: 57  EVDFLIVHHGLFW-GKPFPIVGHHKRRLETLFQGGINLYAAHLPLDAHEEVGNNFVLARE 115
Query: 62  LNF 64
           L  
Sbjct: 116 LGL 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1nmo_A	247	Hypothetical protein YBGI; toroidal structure, str	7e-49
2yyb_A	242	Hypothetical protein TTHA1606; structural genomics	1e-45
2fyw_A	267	Conserved hypothetical protein; structural genomic	3e-23
2nyd_A	370	UPF0135 protein SA1388; hypothetical protein SA138	5e-09
2nyd_A	370	UPF0135 protein SA1388; hypothetical protein SA138	3e-05
2gx8_A	397	NIF3-related protein; structural genomics, unknown	9e-08
2gx8_A	397	NIF3-related protein; structural genomics, unknown	3e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Length = 247

 Score =  156 bits (397), Expect = 7e-49
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 11/154 (7%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
            ADA++VHHGYFWKGE+  I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA +
Sbjct: 56  GADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAAL 115

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGDLNKKI 120
           L  +         +   G+            +   +L   I  ++G+KP+       + +
Sbjct: 116 LGITVMGEI--EPLVPWGE--------LTMPVPGLELASWIEARLGRKPLWCGDTGPEVV 165

Query: 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 166 QRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus} Length = 242

 Score =  148 bits (376), Expect = 1e-45
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 15/153 (9%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
             D ++VHHG FW      IVG  K+RLE L    INLYA HLPLD H ++GNN  LA+ 
Sbjct: 57  EVDFLIVHHGLFWGKPFP-IVGHHKRRLETLFQGGINLYAAHLPLDAHEEVGNNFVLARE 115

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIY 121
           L       +    +G  G+        F +   +  +   + +  G +P+V       + 
Sbjct: 116 LGLVDLTPWD---VGVKGR--------FPQPTPLLQVADRLGQLTGMQPLVHQGGLDHVE 164

Query: 122 EIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
            +   +G+   LL          +++GE   S 
Sbjct: 165 TVILVSGSGTGLLPKV---DADLFVTGEPKHSV 194

>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1 Length = 267

 Score = 91.2 bits (227), Expect = 3e-23
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 6/154 (3%)

Query: 1   MNADAILVHHGYFWKGENS-NIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLA 59
              D I+V H   ++          + +    LI + I +Y  H  +D+    G N    
Sbjct: 58  KGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVEN-GLNDWFC 116

Query: 60  KILNFSCTRRFSKNNIGW-IGKIINLKRYNFKKIIT-IKDLFHHITRKIGKKPIVIGDLN 117
           ++L    T    +      IG+I N++   F ++   +K +F   + ++        DL 
Sbjct: 117 QMLGIEETTYLQETGPERGIGRIGNIQPQTFWELAQQVKQVFDLDSLRMVHY--QEDDLQ 174

Query: 118 KKIYEIGWCTGAAQNLLTDAINEGVTAYISGEIS 151
           K I  +  C G+ Q+   DA+ +G   YI+G+I 
Sbjct: 175 KPISRVAICGGSGQSFYKDALAKGADVYITGDIY 208

>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A* Length = 370

 Score = 52.7 bits (126), Expect = 5e-09
 Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 6/156 (3%)

Query: 1   MNADAILVHHGYFWKGENSNIV----GIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNA 56
                   +   F++ E                +   I  ++       +D + +     
Sbjct: 157 NGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQIDKIEDVDEVKIEFMIDAY-QKSRAE 215

Query: 57  QLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGD 115
           QL K  +   T  F    I                 +T++D    I  K+    +  +G+
Sbjct: 216 QLIKQYHPYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFVGE 275

Query: 116 LNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEIS 151
            N+KI  I    G+       A+ +G   +++G+I 
Sbjct: 276 SNQKIKRIAIIGGSGIGYEYQAVQQGADVFVTGDIK 311

>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A* Length = 370

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
              + I+ HH   +KG  S         + +LI + INL A H  LD++P  G N  LAK
Sbjct: 60  KGYNTIISHHPLIFKGVTSLKANGYGLIIRKLIQHDINLIAMHTNLDVNPY-GVNMMLAK 118

Query: 61  ILNFSCTRRFSKNNIGW 77
           ++        +     +
Sbjct: 119 VMGLKNISIINNQQDVY 135

>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1 Length = 397

 Score = 49.3 bits (117), Expect = 9e-08
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 13  FWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK 72
           F   E +N    +  +LE++   +I             K    A   + + +      +K
Sbjct: 204 FVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNK 263

Query: 73  NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGDLNKKIYEIGWCTGAAQ 131
                +GKI  L+       +T+     H+ + +  K   V+G L+ K+ ++    G   
Sbjct: 264 GETLGLGKIGYLQEE-----MTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGN 318

Query: 132 NLLTDAINEGVTAYISGEIS 151
             +  A  +G   Y++G++ 
Sbjct: 319 KYINQAKFKGADVYVTGDMY 338

>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1 Length = 397

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 1   MNADAILVHHGYFWKGENS-NIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLA 59
           + A+ I+ HH   +    + +      K +E+ I N I +YA H  +D+    G N  LA
Sbjct: 84  LGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKG-GVNDLLA 142

Query: 60  KILNFSCTRRFSKNNIGWIGKIINLKRYNF 89
           + L    T   +      + K++       
Sbjct: 143 EALGLQNTEVLAPTYAEEMKKVVVFVPVTH 172

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 13/42 (30%)

Query: 17 ENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQL 58
          E   +     K+L+      + LYA     D  P L   A +
Sbjct: 18 EKQAL-----KKLQ----ASLKLYA---D-DSAPALAIKATM 46

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 28/142 (19%)

Query: 13  FWKGENSNIVGIKKKRLEQ--LIINKINLYAYHLP---LDMHPKLGNNAQL-AKILN-FS 65
            W     + V +   +L +  L+  +       +P   L++  KL N   L   I++ ++
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 66  CTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHI-----TRKIGKKPIVIGDLN--- 117
             + F  +++        L +Y +  I       HH+       ++    +V  D     
Sbjct: 455 IPKTFDSDDLI----PPYLDQYFYSHIG------HHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 118 KKIYEIG--W-CTGAAQNLLTD 136
           +KI      W  +G+  N L  
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQ 526

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2fyw_A	267	Conserved hypothetical protein; structural genomic	100.0
1nmo_A	247	Hypothetical protein YBGI; toroidal structure, str	100.0
2nyd_A	370	UPF0135 protein SA1388; hypothetical protein SA138	100.0
2gx8_A	397	NIF3-related protein; structural genomics, unknown	100.0
2yyb_A	242	Hypothetical protein TTHA1606; structural genomics	100.0
3rxy_A	278	NIF3 protein; structural genomics, PSI-biology, mi	99.56
2fyw_A	267	Conserved hypothetical protein; structural genomic	96.22
1nmo_A	247	Hypothetical protein YBGI; toroidal structure, str	95.4
2nyd_A	370	UPF0135 protein SA1388; hypothetical protein SA138	95.19
2gx8_A	397	NIF3-related protein; structural genomics, unknown	94.9
2yyb_A	242	Hypothetical protein TTHA1606; structural genomics	93.57
3rxy_A	278	NIF3 protein; structural genomics, PSI-biology, mi	91.68

>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1

Probab=100.00  E-value=1.7e-47  Score=310.80  Aligned_cols=149  Identities=23%  Similarity=0.403  Sum_probs=136.7

Q ss_pred             CCccEEEEcCCCCccCCCCC-ccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc----CCe
Q psy2388           1 MNADAILVHHGYFWKGENSN-IVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK----NNI   75 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~-~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~----~~~   75 (159)
                      ++|||||||||+||++.++. ..+++++++.+|++|||+|||+|||||++++ |+|++||+.|||++.+++.+    .++
T Consensus        58 ~gadlIitHHP~~f~~~~~~~~~~~~~~~i~~li~~~I~lya~Ht~lD~~~~-G~n~~La~~Lgl~~~~~l~~~~~~~g~  136 (267)
T 2fyw_A           58 KGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVEN-GLNDWFCQMLGIEETTYLQETGPERGI  136 (267)
T ss_dssp             TTCSEEEESSCSCCSCCCCCCTTSHHHHHHHHHHHTTCEEEECSHHHHHSTT-SHHHHHHHHHTCEEEEEEEEEETTEEE
T ss_pred             CCCCEEEECCccccCCccccccCchHHHHHHHHHHCCCeEEEeeccccccCC-CHHHHHHHHcCCCcccccccCCCCCCe
Confidence            48999999999999998776 4678999999999999999999999999998 99999999999999998764    468


Q ss_pred             eeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEE-----cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccC
Q psy2388          76 GWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-----GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI  150 (159)
Q Consensus        76 g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-----~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~  150 (159)
                      |++|+        + +|+|++||++++|+.|+++.+|+     ++.+++|+|||||+|||++++++|.++|||+|||||+
T Consensus       137 G~ig~--------l-~~~t~~el~~~vk~~l~~~~vr~~~~~~g~~~~~I~rVAv~~GsG~~~~~~a~~~gaD~~ITGd~  207 (267)
T 2fyw_A          137 GRIGN--------I-QPQTFWELAQQVKQVFDLDSLRMVHYQEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDI  207 (267)
T ss_dssp             EEEEE--------E-EEEEHHHHHHHHHHHTTCSCCEEECSCTTGGGSEEEEEEEESSSCGGGHHHHHHTTCSEEEESCC
T ss_pred             EEEEE--------e-ccCCHHHHHHHHHHHcCCCeEEEEeccCCCCCCceeEEEEEcCCCHHHHHHHHHcCCCEEEEccC
Confidence            88888        8 79999999999999999887887     4556789999999999999999999999999999999


Q ss_pred             CchhhhccC
Q psy2388         151 SESTKKNLK  159 (159)
Q Consensus       151 k~~~~~~a~  159 (159)
                      +||++++|+
T Consensus       208 ~~h~~~~A~  216 (267)
T 2fyw_A          208 YYHTAQDML  216 (267)
T ss_dssp             CHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            999998873

>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A

Probab=100.00  E-value=5.4e-47  Score=304.86  Aligned_cols=148  Identities=41%  Similarity=0.753  Sum_probs=134.4

Q ss_pred             CCccEEEEcCCCCc-cCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEE
Q psy2388           1 MNADAILVHHGYFW-KGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIG   79 (159)
Q Consensus         1 ~~adlIItHHp~~f-~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig   79 (159)
                      ++|||||||||+|| ++.+ .+++.+++++.+|++|||+|||+|||||+++++|+|++||+.|||++..++.  ++|++|
T Consensus        55 ~~adlIitHHP~~f~~~~~-~i~~~~~~~i~~li~~~I~ly~~HtnlD~~~~~G~n~~La~~Lgl~~~~~~~--g~G~ig  131 (247)
T 1nmo_A           55 LGADAVIVHHGYFWKGESP-VIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIE--PLVPWG  131 (247)
T ss_dssp             TTCSEEEEEECSCCTTSCC-CCCTHHHHHHHHHHHTTCEEEECCHHHHHCTTTSHHHHHHHHHTEEEEEEEE--TTEEEE
T ss_pred             CCCCEEEECCchhccCCCc-cccchHHHHHHHHHHCCCEEEEeeechhhCCCCCHHHHHHHHcCCCCccccC--CeEEEE
Confidence            48999999999999 5543 4667789999999999999999999999999889999999999999988764  689999


Q ss_pred             EEccccccccCCccCHHHHHHHHHhHhCCCcEEEcCC-CCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388          80 KIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDL-NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNL  158 (159)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~~~-~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a  158 (159)
                      +        +++|+|+++|++++|+.|+.+.+++++. +++|+|||||+|||++++++|.++|||+|||||++||++++|
T Consensus       132 ~--------l~~~~t~~~l~~~vk~~l~~~~~~~g~~~~~~i~~VAv~~GsG~~~~~~a~~~gaD~~iTGd~~~h~~~~a  203 (247)
T 1nmo_A          132 E--------LTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSA  203 (247)
T ss_dssp             E--------EEEEECHHHHHHHHHHHHTSCCEEECTTSCSSEEEEEECSSSCGGGHHHHHHHCCSEEEESCCCHHHHHHH
T ss_pred             E--------eCCCCcHHHHHHHHHHHcCCCeEEECCCCcCccCEEEEECCCcHHHHHHHHHcCCCEEEEcCccHHHHHHH
Confidence            9        9889999999999999999876666765 578999999999999999999999999999999999999887


Q ss_pred             C
Q psy2388         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       204 ~  204 (247)
T 1nmo_A          204 R  204 (247)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*

Probab=100.00  E-value=1.2e-46  Score=317.81  Aligned_cols=148  Identities=25%  Similarity=0.417  Sum_probs=136.0

Q ss_pred             CCccEEEEcCCCCccCCCCC-ccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc-------
Q psy2388           1 MNADAILVHHGYFWKGENSN-IVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK-------   72 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~-~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~-------   72 (159)
                      ++|||||||||+||++.++. .+++ ++++.+|++|||+|||+|||||++++ |+|+|||+.|||++.+++.+       
T Consensus        60 ~~adlIItHHPlif~~~k~i~~~~~-~r~i~~li~~~Ialya~HTnlD~~~~-GvNd~LA~~Lgl~~~~~l~~~~~~~~k  137 (370)
T 2nyd_A           60 KGYNTIISHHPLIFKGVTSLKANGY-GLIIRKLIQHDINLIAMHTNLDVNPY-GVNMMLAKVMGLKNISIINNQQDVYYK  137 (370)
T ss_dssp             HTCCEEEESSCSSCSCCSCCCSSTH-HHHHHHHHHTTCEEEECCHHHHTSTT-SHHHHHHHHTTCEEEEECSEEEEEEEE
T ss_pred             CCCCEEEECCCcccCCccccCcCCH-HHHHHHHHHCCCeEEEeechhhccCC-cHHHHHHHHcCCCcccccCccccccce
Confidence            37999999999999998776 4668 99999999999999999999999998 99999999999998876642       


Q ss_pred             --------------------------------------------------------------------------------
Q psy2388          73 --------------------------------------------------------------------------------   72 (159)
Q Consensus        73 --------------------------------------------------------------------------------   72 (159)
                                                                                                      
T Consensus       138 l~v~vP~~~~~~v~~al~~aGag~ig~Y~~csf~~~G~G~F~p~~~a~P~ig~~g~~~~v~e~rie~i~~~~~~~~v~~a  217 (370)
T 2nyd_A          138 VQTYIPKDNVGPFKDKLSENGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQIDKIEDVDEVKIEFMIDAYQKSRAEQL  217 (370)
T ss_dssp             EC---------------------------------------------------------------CEEECSTHHHHHHHH
T ss_pred             eEEecchhhHHHHHHHHHhcccccccccccceecccccceeccccccCCccccccccccccceEEEEEechhhHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------CCeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecC
Q psy2388          73 ----------------------NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGA  129 (159)
Q Consensus        73 ----------------------~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gs  129 (159)
                                            .|+|++|+        |++|+|+++|++++|+.|+++.+|+ ++.+++|+|||||+||
T Consensus       218 l~~~hpyee~ayd~~~l~~~~~~GlGriG~--------L~~p~tl~~~~~~vk~~l~~~~vr~~g~~~~~I~~VAvc~Gs  289 (370)
T 2nyd_A          218 IKQYHPYETPVFDFIEIKQTSLYGLGVMAE--------VDNQMTLEDFAADIKSKLNIPSVRFVGESNQKIKRIAIIGGS  289 (370)
T ss_dssp             HCC-----CCCCCEEEEEEEEEEESCEEEE--------EEEEEEHHHHHHHHHHHTTCSCCEEESCTTCEEEEEEECCSC
T ss_pred             HHhhCCccccccccccccccCCCCeEEEEE--------cCCCCCHHHHHHHHHHHcCCCceEEecCCCCcccEEEEEcCC
Confidence                                  25778888        9999999999999999999998888 7777889999999999


Q ss_pred             chHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388         130 AQNLLTDAINEGVTAYISGEISESTKKNL  158 (159)
Q Consensus       130 g~~~i~~a~~~~~D~~ITGe~k~~~~~~a  158 (159)
                      |++++++|.+.|||+|||||++||++++|
T Consensus       290 G~~~i~~a~~~gaDvyITGD~~~H~~~~A  318 (370)
T 2nyd_A          290 GIGYEYQAVQQGADVFVTGDIKHHDALDA  318 (370)
T ss_dssp             CTTSHHHHHHTTCSEEEESCCCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCEEEeCCccHHHHHHH
Confidence            99999999999999999999999999887

>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1

Probab=100.00  E-value=1.9e-46  Score=318.83  Aligned_cols=149  Identities=22%  Similarity=0.375  Sum_probs=135.8

Q ss_pred             CCccEEEEcCCCCccCCCCC-ccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc-------
Q psy2388           1 MNADAILVHHGYFWKGENSN-IVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK-------   72 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~-~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~-------   72 (159)
                      ++|||||||||+||+|.++. .++++++++.+|++|||+|||+|||||++++ |+|+|||+.|||++.+++.+       
T Consensus        84 ~gadlIItHHPlif~~lk~i~~~~~~~r~i~~li~~~Iavya~HTnlD~~~~-GvNd~LA~~LGl~~~~~L~~~~~~~~~  162 (397)
T 2gx8_A           84 LGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKG-GVNDLLAEALGLQNTEVLAPTYAEEMK  162 (397)
T ss_dssp             HTCCEEEESSCSCCSCCSCCCTTSHHHHHHHHHHHTTCEEEECCHHHHHSTT-SHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred             CCCCEEEECCccccCCccccCcCcHHHHHHHHHHHCCCeEEEeechhhcCCC-CHHHHHHHHcCCCcccccCcccccccc
Confidence            37999999999999998776 4678999999999999999999999999998 99999999999997765431       


Q ss_pred             --------------------------------------------------------------------------------
Q psy2388          73 --------------------------------------------------------------------------------   72 (159)
Q Consensus        73 --------------------------------------------------------------------------------   72 (159)
                                                                                                      
T Consensus       163 Kl~v~vp~~~~~~v~~al~~aGag~ig~y~~csf~~~G~G~F~p~~~a~P~iG~~g~~~~v~e~rie~i~p~~~~~~v~~  242 (397)
T 2gx8_A          163 KVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIK  242 (397)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTTTCBTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHH
T ss_pred             eeeEeccchhhHHHHHHhhhccccccccccccccccccceeeccccCCCCccCCcCcccccceeEEEEEecHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ------------------------CCeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEe
Q psy2388          73 ------------------------NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCT  127 (159)
Q Consensus        73 ------------------------~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~  127 (159)
                                              .|+||+|+        |++|+|+++|++++|+.|+++.+|+ ++.+++|+|||||+
T Consensus       243 al~~~HPyee~ayd~~~l~~~~~~~GlGriG~--------L~~p~tl~~f~~~vk~~L~~~~vr~~g~~~~~I~rVAvc~  314 (397)
T 2gx8_A          243 AMVTAHPYEEVAYDVYPLDNKGETLGLGKIGY--------LQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLG  314 (397)
T ss_dssp             HHHHHSSSSSCCEEEEEEEEEEEEEEEEEEEE--------EEEEEEHHHHHHHHHHHTTCSCCEEESCTTSEEEEEEEEE
T ss_pred             HHHHhCCcccccccccccccccccCCeEEEEE--------cCCCCCHHHHHHHHHHHcCCCceEEECCCCCceeEEEEEc
Confidence                                    25677777        9999999999999999999998888 67778899999999


Q ss_pred             cCchHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388         128 GAAQNLLTDAINEGVTAYISGEISESTKKNL  158 (159)
Q Consensus       128 Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a  158 (159)
                      |||++++++|.+.|||+|||||++||++++|
T Consensus       315 GSG~~~i~~A~~~gaDvyITGD~~~H~a~dA  345 (397)
T 2gx8_A          315 GDGNKYINQAKFKGADVYVTGDMYYHVAHDA  345 (397)
T ss_dssp             EECGGGHHHHHHTTCSEEEEECCCHHHHHHH
T ss_pred             CCcHHHHHHHHHCCCCEEEecCCcHHHHHHH
Confidence            9999999999999999999999999999887

>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}

Probab=100.00  E-value=9.2e-47  Score=302.78  Aligned_cols=143  Identities=30%  Similarity=0.496  Sum_probs=131.7

Q ss_pred             CCccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEE
Q psy2388           1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGK   80 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~   80 (159)
                      ++|||||||||+|| +.++..++++++++.+|++|||+|||+|||||+++++|+|++||+.|||++.+++.   +|++|+
T Consensus        56 ~~adlIitHHp~~f-~~~~~~~~~~~~~i~~li~~~I~ly~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~l~---~G~ig~  131 (242)
T 2yyb_A           56 EEVDFLIVHHGLFW-GKPFPIVGHHKRRLETLFQGGINLYAAHLPLDAHEEVGNNFVLARELGLVDLTPWD---VGVKGR  131 (242)
T ss_dssp             TTCSEEEEEECSCS-SCCCCSCHHHHHHHHHHHHTTCEEEECSHHHHHCTTTCHHHHHHHTTTCCSCCCCS---TTCCCC
T ss_pred             CCCCEEEECCCcCc-CcccccccHHHHHHHHHHHCCCeEEEeccHHhcCCCcCHHHHHHHHcCCCCCccce---eEEEEE
Confidence            58999999999999 87777667899999999999999999999999999889999999999999998864   888888


Q ss_pred             EccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhccC
Q psy2388          81 IINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK  159 (159)
Q Consensus        81 ~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a~  159 (159)
                              +++|+|+++|++++|++|+ +.+|+ ++.+++|+|||||+|||++++++|   |||+|||||++||++++|+
T Consensus       132 --------l~~~~t~~~l~~~vk~~l~-~~vr~~g~~~~~i~~VAv~~GsG~~~~~~a---gaD~~iTGd~~~h~~~~A~  199 (242)
T 2yyb_A          132 --------FPQPTPLLQVADRLGQLTG-MQPLVHQGGLDHVETVILVSGSGTGLLPKV---DADLFVTGEPKHSVFHETF  199 (242)
T ss_dssp             --------CCCCSCBSTHHHHHHHTTS-SCCEEEESSCSBCCCEEEECSSCGGGGGGC---CSSEEEESCCCGGGHHHHH
T ss_pred             --------eCCCcCHHHHHHHHHHHcc-cCeEEecCCCCceeEEEEEcCCCHHHHHHc---CCCEEEEecCCHHHHHHHH
Confidence                    9889999999999999999 77887 777778999999999999998776   9999999999999998873

>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}

Probab=99.56  E-value=4.1e-16  Score=125.52  Aligned_cols=99  Identities=13%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             CccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEEEccccccccCCccCHHHHHHHHHhHh------CCC
Q psy2388          36 KINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKI------GKK  109 (159)
Q Consensus        36 ~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l------~~~  109 (159)
                      +|...++|||.|..    +...|-+.+.-         ++   +.        ....-|+.++++.+++.=      .-+
T Consensus       129 ~~p~m~~H~paD~~----~~~~l~~~~~~---------~~---~~--------~~p~~t~~dvi~~L~~ipEy~~a~~~p  184 (278)
T 3rxy_A          129 EMPFLNIHLPLDEV----GRRIMVKTIQE---------AV---EP--------LGDEARVQDAIDALMTLPEFAGAATRI  184 (278)
T ss_dssp             TCCEEECCHHHHHH----HHHHHHHHHHH---------HH---GG--------GGGGCBHHHHHHHHTTSHHHHSCSSCC
T ss_pred             CCcceecCcchHHH----HHHHHHHHHhh---------hh---hc--------cCccchHHHHHHHHHhCchhhhcCCCC
Confidence            68888888888854    44555554420         00   00        111145666665554432      235


Q ss_pred             cEEEcCCCCceeEEEEEec----CchHHHHHHHhcCCcEEEEccCCchhh-hcc
Q psy2388         110 PIVIGDLNKKIYEIGWCTG----AAQNLLTDAINEGVTAYISGEISESTK-KNL  158 (159)
Q Consensus       110 ~i~~~~~~~~i~rVai~~G----sg~~~i~~a~~~~~D~~ITGe~k~~~~-~~a  158 (159)
                      .+++++++++++||||++|    +|.+.++++.++|+|+|||||++|+.+ ..|
T Consensus       185 ~I~~g~~~~~vgkIaV~~GgGtsG~~~~i~~a~~~GvDt~ITGe~~~~~~~~~A  238 (278)
T 3rxy_A          185 MVPVGAVDQPLGKIAVVHGAGTNGGYAVARAYFDHGVRTVLYIHIAPEEAERLR  238 (278)
T ss_dssp             EEEESCTTSBCCSEEECCSSSSCCHHHHHHHHHHTTCCEEEESCCCHHHHHHHH
T ss_pred             EEEeCCCCCcCCEEEEEcCCCCCCcHHHHHHHHHcCCCEEEEecCchHHHHHHH
Confidence            6778888999999999999    445789999999999999999999998 544

>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1

Probab=96.22  E-value=0.012  Score=46.98  Aligned_cols=55  Identities=18%  Similarity=0.277  Sum_probs=46.9

Q ss_pred             cCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          93 ITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        93 ~~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      |+..|+.+.+.+.+..        ..+.+|+.+++|+||++|-=...+.+++|.++|||++||
T Consensus         3 M~~~ei~~~le~~~p~~~a~~~D~~GL~vG~~~~~V~~I~~alD~t~~vi~eAi~~gadlIit   65 (267)
T 2fyw_A            3 MLASEVIQAYEAFCPQEFSMEGDSRGLQIGTLDKGIQRVMVALDIREETVAEAIEKGVDLIIV   65 (267)
T ss_dssp             CBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCSEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred             ccHHHHHHHHHHhCCHhHcCCCCCCeeEeCCCcCccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence            5678899998887643        256667778899999999999999999999999999997

>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A

Probab=95.40  E-value=0.054  Score=42.63  Aligned_cols=54  Identities=22%  Similarity=0.278  Sum_probs=44.1

Q ss_pred             cCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          93 ITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        93 ~~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      |+..|+.+.+.+.+..        ..+.+ +++++|+||++|-=.....+++|.++|||++||
T Consensus         1 M~~~ei~~~le~~~p~~~~~~~d~~GL~v-~~~~~V~~I~~~lD~t~~vi~eAi~~~adlIit   62 (247)
T 1nmo_A            1 MKNTELEQLINEKLNSAAISDYAPNGLQV-EGKETVQKIVTGVTASQALLDEAVRLGADAVIV   62 (247)
T ss_dssp             CBHHHHHHHHHHHTTCTTSCCSSCCEEEE-CCCSBCCEEEEEEECCHHHHHHHHHTTCSEEEE
T ss_pred             CcHHHHHHHHHHhCChhhhCCcCCCeeEE-CCCCccCEEEEEEcCCHHHHHHHHhCCCCEEEE
Confidence            3567888888888742        23445 567899999999999999999999999999997

>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*

Probab=95.19  E-value=0.037  Score=46.30  Aligned_cols=56  Identities=20%  Similarity=0.312  Sum_probs=48.2

Q ss_pred             ccCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          92 IITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        92 ~~~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      +|++.|+++.+.+.+..        ..+.+|+.+++|+||++|-=.-...+++|.++|||++||
T Consensus         4 ~m~~~eii~~le~~~P~~~ae~wDn~GL~vG~~~~~V~~Vl~alD~t~~Vv~eAi~~~adlIIt   67 (370)
T 2nyd_A            4 PMKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDVEVTGVLTALDCTLEVVNEAIEKGYNTIIS   67 (370)
T ss_dssp             CCBHHHHHHHHHHHSCGGGSCTTCCCEEEESCTTSBCCCEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred             CcCHHHHHHHHHHhCCHhHcCCCCcCeEEeCCCcCccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence            57788999999887643        256677778899999999999999999999999999997

>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1

Probab=94.90  E-value=0.055  Score=45.71  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=47.8

Q ss_pred             ccCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          92 IITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        92 ~~~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      .+++.|+++.+.+.+..        ..+.+|+.+++|+||++|-=.-...+++|.++|||++||
T Consensus        28 ~m~~~eii~~le~~aP~~lae~wDnvGL~vG~~~~~V~~Vl~alD~t~~Vv~eAi~~gadlIIt   91 (397)
T 2gx8_A           28 IPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIA   91 (397)
T ss_dssp             CCBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCCEEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred             cccHHHHHHHHHHhCCHhHcCCCCCCeeEeCCCccccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence            36688999999987643        256677778899999999999999999999999999997

>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}

Probab=93.57  E-value=0.091  Score=41.23  Aligned_cols=52  Identities=15%  Similarity=0.310  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHhHhCC---------CcEEE-cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          94 TIKDLFHHITRKIGK---------KPIVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        94 ~~~~l~~~lk~~l~~---------~~i~~-~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      +..|+.+.+.+.+..         ..+.+ |+  ++|+||++|-=...+.+++|.++|||++||
T Consensus         2 ~~~ei~~~le~~~p~~~~~~~~d~~GL~veG~--~~V~~I~~alD~t~~vi~eAi~~~adlIit   63 (242)
T 2yyb_A            2 DRDELVRYLDAYLRIQDFPQDPSLNGLQVEGK--RTVRKVGAAVDAGEAIFRKALEEEVDFLIV   63 (242)
T ss_dssp             BHHHHHHHHHHHTTGGGCTTCSSCCEEEECCC--SBCCCEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred             cHHHHHHHHHHhCCHhhhccCCCCCeEEEcCC--cccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence            466777777776543         23555 43  889999999999999999999999999997

>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}

Probab=91.68  E-value=0.68  Score=37.16  Aligned_cols=54  Identities=9%  Similarity=0.038  Sum_probs=45.0

Q ss_pred             ccCHHHHHHHHHhHhCCC------cEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          92 IITIKDLFHHITRKIGKK------PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        92 ~~~~~~l~~~lk~~l~~~------~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      -++.+++.+.+.+.-++.      .+.+  .+++|+||.++-=...+.+.+|.+.|||++||
T Consensus         6 ~m~~~~I~~~~~e~aplae~~dd~Gllv--~~~eV~kIlvaLD~t~~vv~eA~~~g~dlIIt   65 (278)
T 3rxy_A            6 GLSTAELVDIALEMAEMRTLPADSAVYV--ESTDLKRVMMGIDIGPAELLLARQLGCDGVIA   65 (278)
T ss_dssp             CBCHHHHHHHHHHHTTCSSCCTTCEEEE--CCSCBSEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred             cCcHHHHHHHHHHhcCcccCCCCceeee--ccccccEEEEEECCCHHHHHHHHHcCCCEEEE
Confidence            467888888888877642      3334  68899999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1nmpa_	247	c.135.1.1 (A:) Hypothetical protein YbgI {Escheric	3e-27
d2fywa1	265	c.135.1.1 (A:1-265) Hypothetical protein SP1609 {S	2e-21
d2gx8a1	370	c.135.1.1 (A:4-373) Nif3-related protein BC4286 {B	4e-15
d2gx8a1	370	c.135.1.1 (A:4-373) Nif3-related protein BC4286 {B	2e-09

>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein YbgI
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (249), Expect = 3e-27
 Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 11/155 (7%)

Query: 1   MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
           + ADA++VHHGYFWKGE+  I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA 
Sbjct: 55  LGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114

Query: 61  ILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG-DLNKK 119
           +L  +                           +   +L   I  ++G+KP+  G    + 
Sbjct: 115 LLGITVMGEIEPLVPWG----------ELTMPVPGLELASWIEARLGRKPLWCGDTGPEV 164

Query: 120 IYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           +  + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 165 VQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199

>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]} Length = 265

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein SP1609
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 85.5 bits (211), Expect = 2e-21
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLE-QLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
             D I+V H   ++     +    + ++   LI + I +Y  H  +D+    G N    +
Sbjct: 57  GVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVEN-GLNDWFCQ 115

Query: 61  ILNFSCTRRFSKNN----IGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI--- 113
           +L    T    +      IG IG I            T  +L   + +      + +   
Sbjct: 116 MLGIEETTYLQETGPERGIGRIGNIQP---------QTFWELAQQVKQVFDLDSLRMVHY 166

Query: 114 --GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
              DL K I  +  C G+ Q+   DA+ +G   YI+G+I   T
Sbjct: 167 QEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDIYYHT 209

>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} Length = 370

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Nif3-related protein BC4286
species: Bacillus cereus [TaxId: 1396]

 Score = 69.3 bits (169), Expect = 4e-15
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 1   MNADAILVHHGYFWKGENS-NIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLA 59
           + A+ I+ HH   +    + +      K +E+ I N I +YA H  +D+    G N  LA
Sbjct: 57  LGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKG-GVNDLLA 115

Query: 60  KILNFSCTRRFS 71
           + L    T   +
Sbjct: 116 EALGLQNTEVLA 127

>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} Length = 370

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Nif3-related protein BC4286
species: Bacillus cereus [TaxId: 1396]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 16  GENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNI 75
           GE   +  +++ R+E +I   +        +  HP       +  + N     +     +
Sbjct: 188 GETGQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDN-----KGETLGL 242

Query: 76  GWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGDLNKKIYEIGWCTGAAQNLL 134
           G IG          ++ +T+     H+ + +  K   V+G L+ K+ ++    G     +
Sbjct: 243 GKIGY--------LQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYI 294

Query: 135 TDAINEGVTAYISGEISEST 154
             A  +G   Y++G++    
Sbjct: 295 NQAKFKGADVYVTGDMYYHV 314

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d2gx8a1	370	Nif3-related protein BC4286 {Bacillus cereus [TaxI	100.0
d2fywa1	265	Hypothetical protein SP1609 {Streptococcus pneumon	100.0
d1nmpa_	247	Hypothetical protein YbgI {Escherichia coli [TaxId	100.0
d2fywa1	265	Hypothetical protein SP1609 {Streptococcus pneumon	96.52
d1nmpa_	247	Hypothetical protein YbgI {Escherichia coli [TaxId	96.4
d2gx8a1	370	Nif3-related protein BC4286 {Bacillus cereus [TaxI	95.22

>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Nif3-related protein BC4286
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=3.8e-46  Score=312.91  Aligned_cols=149  Identities=22%  Similarity=0.371  Sum_probs=135.4

Q ss_pred             CCccEEEEcCCCCccCCCCCc-cChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc-------
Q psy2388           1 MNADAILVHHGYFWKGENSNI-VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK-------   72 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~~-~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~-------   72 (159)
                      ++|||||||||+||++.++.. ++++++++.+|++|||+|||+|||||++++ |+|+|||+.|||++.+++.+       
T Consensus        57 ~~adlIItHHPl~f~~~k~l~~~~~~~~~~~~li~~~I~vys~HTnlD~~~~-G~nd~La~~Lgl~~~~~l~~~~~~~~~  135 (370)
T d2gx8a1          57 LGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKG-GVNDLLAEALGLQNTEVLAPTYAEEMK  135 (370)
T ss_dssp             HTCCEEEESSCSCCSCCSCCCTTSHHHHHHHHHHHTTCEEEECCHHHHHSTT-SHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCcCCcccccCCCchhHHHHHHHHCCCeEEEeccchhccCC-cHHHHHHHHhCCCcccccccccccccc
Confidence            379999999999999987665 457899999999999999999999999998 99999999999987665421       


Q ss_pred             --------------------------------------------------------------------------------
Q psy2388          73 --------------------------------------------------------------------------------   72 (159)
Q Consensus        73 --------------------------------------------------------------------------------   72 (159)
                                                                                                      
T Consensus       136 ~~~~~~p~~~~~~~~~~~~~agag~ig~y~~~~~~~~g~G~~~~~~~~~P~ig~~~~~~~~~e~~~e~~~~~~~~~~v~~  215 (370)
T d2gx8a1         136 KVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIK  215 (370)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTTTCBTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHH
T ss_pred             ceEEEeChhhhhhhhhcchhcCCCcccccccccccccCcccccCCCCCCCccCcCCceeecchhheeeechHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ------------------------CCeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEe
Q psy2388          73 ------------------------NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCT  127 (159)
Q Consensus        73 ------------------------~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~  127 (159)
                                              .|+|++|+        +++|+|+++|++++|+.|+++.+|+ ++.+++|+|||||+
T Consensus       216 al~~ahpy~~~~~~~~~~~~~~~~~G~Grig~--------l~~p~~l~~~~~~vk~~l~~~~vr~~g~~~~~I~~VAvc~  287 (370)
T d2gx8a1         216 AMVTAHPYEEVAYDVYPLDNKGETLGLGKIGY--------LQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLG  287 (370)
T ss_dssp             HHHHHSSSSSCCEEEEEEEEEEEEEEEEEEEE--------EEEEEEHHHHHHHHHHHTTCSCCEEESCTTSEEEEEEEEE
T ss_pred             HHHHhCCcchhhhhhccccccccccCcceEEE--------eCCcccHHHHHHHHHHHcCCCeEEEeCCCCCceeEEEEEc
Confidence                                    15777777        9999999999999999999999998 67788999999999


Q ss_pred             cCchHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388         128 GAAQNLLTDAINEGVTAYISGEISESTKKNL  158 (159)
Q Consensus       128 Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a  158 (159)
                      |||++++++|.+.|||+|||||+|||++++|
T Consensus       288 GSG~s~i~~a~~~gaDv~ITGe~k~h~~~dA  318 (370)
T d2gx8a1         288 GDGNKYINQAKFKGADVYVTGDMYYHVAHDA  318 (370)
T ss_dssp             EECGGGHHHHHHTTCSEEEEECCCHHHHHHH
T ss_pred             cccHHHHHHHHHCCCCEEEEcCCcHHHHHHH
Confidence            9999999999999999999999999999986

>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein SP1609
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=1.5e-44  Score=291.22  Aligned_cols=148  Identities=24%  Similarity=0.413  Sum_probs=131.8

Q ss_pred             CCccEEEEcCCCCccCCCCCcc-ChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc----CCe
Q psy2388           1 MNADAILVHHGYFWKGENSNIV-GIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK----NNI   75 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~~~-~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~----~~~   75 (159)
                      ++|||||||||+||++.++... .++++++++|++|||+||++|||||+++. |+|++||++|||+...++.+    .++
T Consensus        56 ~~adlIItHHp~~f~~~~~~~~~~~~~~~~~~lik~~I~vy~~Ht~lD~~~~-G~n~~la~~Lgl~~~~~~~~~~~~~g~  134 (265)
T d2fywa1          56 KGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVEN-GLNDWFCQMLGIEETTYLQETGPERGI  134 (265)
T ss_dssp             TTCSEEEESSCSCCSCCCCCCTTSHHHHHHHHHHHTTCEEEECSHHHHHSTT-SHHHHHHHHHTCEEEEEEEEEETTEEE
T ss_pred             cCCCEEEecCCcceeccccccCCChHHHHHHHHHhCCCeEEEeccchhhccC-cHHHHHHHHhCCcccccccccccccce
Confidence            5899999999999999876554 47889999999999999999999999987 99999999999998776653    257


Q ss_pred             eeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEEc-----CCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccC
Q psy2388          76 GWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG-----DLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI  150 (159)
Q Consensus        76 g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~-----~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~  150 (159)
                      |++|.        ++ ++|+.+|+++++++|+++.+|+.     +.+++|+|||+|+|||++++++|.++|||+|||||+
T Consensus       135 g~ig~--------~~-~~t~~el~~~ik~~l~~~~vr~~~~~~~~~~~~i~~Vai~~GsG~~~i~~a~~~g~D~~ITGe~  205 (265)
T d2fywa1         135 GRIGN--------IQ-PQTFWELAQQVKQVFDLDSLRMVHYQEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDI  205 (265)
T ss_dssp             EEEEE--------EE-EEEHHHHHHHHHHHTTCSCCEEECSCTTGGGSEEEEEEEESSSCGGGHHHHHHTTCSEEEESCC
T ss_pred             eEEec--------cc-cccHHHHHHHHHHhcCCCceEEEeccCCCcCCcccEEEEECCCchhhhhhHhhcCCCEEEECCc
Confidence            77787        75 78999999999999999988873     236789999999999999999999999999999999


Q ss_pred             Cchhhhcc
Q psy2388         151 SESTKKNL  158 (159)
Q Consensus       151 k~~~~~~a  158 (159)
                      +||++++|
T Consensus       206 k~h~~~~a  213 (265)
T d2fywa1         206 YYHTAQDM  213 (265)
T ss_dssp             CHHHHHHH
T ss_pred             CcHHHHHH
Confidence            99999887

>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein YbgI
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.5e-44  Score=284.34  Aligned_cols=148  Identities=41%  Similarity=0.755  Sum_probs=134.3

Q ss_pred             CCccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEE
Q psy2388           1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGK   80 (159)
Q Consensus         1 ~~adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~   80 (159)
                      +||||||||||+||++.++...+++++++++|++|+|+||++|||||+++++|+|++||+.||+++.+++.+  .+..++
T Consensus        55 ~g~dlIItHHP~~f~~~~~~~~~~~~~~i~~lik~~I~vy~~Htn~D~~~~~G~~~~La~~lg~~~~~~~~~--~~~~~~  132 (247)
T d1nmpa_          55 LGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEP--LVPWGE  132 (247)
T ss_dssp             TTCSEEEEEECSCCTTCCCCCCHHHHHHHHHHHHTTCEEEECCHHHHHCTTTSHHHHHHHHTTEEEEEEEET--TEEEEE
T ss_pred             CCCCEEEECCccccCCCCccccCcchHHHHHHHHCCcceEEccCCcccccccchHHHHHHHhhhcccccccc--cccccc
Confidence            489999999999999987666677888899999999999999999999887799999999999999888763  344666


Q ss_pred             EccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388          81 IINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNL  158 (159)
Q Consensus        81 ~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a  158 (159)
                              ++.|+|++||+++++++|+.+.+++ ++.+++|+|||+|+|||++++++|.++|||+|||||++||++++|
T Consensus       133 --------l~~~~~~~el~~~vk~~l~~~~~~~~~~~~~~v~~Vai~~GsG~s~~~~a~~~gaD~~ITGd~k~h~~~~A  203 (247)
T d1nmpa_         133 --------LTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSA  203 (247)
T ss_dssp             --------EEEEECHHHHHHHHHHHHTSCCEEECTTCCSSEEEEEECSSSCGGGHHHHHHHCCSEEEESCCCHHHHHHH
T ss_pred             --------ccCccCHHHHHHHHHHHhCCCceEecCCCCceeeEEEEEeCCChHHHHHHHhcCCCEEEecCCChHHHHHH
Confidence                    7889999999999999999999888 556789999999999999999999999999999999999999886

>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein SP1609
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.52  E-value=0.0028  Score=48.71  Aligned_cols=55  Identities=18%  Similarity=0.277  Sum_probs=46.1

Q ss_pred             cCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          93 ITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        93 ~~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      |.+.|+++.+++....        ..+.+|+.+++|+||++|-=...+.+++|.++|||++||
T Consensus         1 M~~~dii~~le~~~P~~la~~wDn~Gl~vg~~~~~V~kI~v~lD~t~~vi~~Ai~~~adlIIt   63 (265)
T d2fywa1           1 MLASEVIQAYEAFCPQEFSMEGDSRGLQIGTLDKGIQRVMVALDIREETVAEAIEKGVDLIIV   63 (265)
T ss_dssp             CBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCSEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred             CcHHHHHHHHHHhCCHhhcCCcCcceeEecCCCCccCEEEEEEcCCHHHHHHHHHcCCCEEEe
Confidence            4577888888776532        256777778899999999999999999999999999998

>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Hypothetical protein YbgI
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0049  Score=46.64  Aligned_cols=54  Identities=22%  Similarity=0.276  Sum_probs=46.3

Q ss_pred             cCHHHHHHHHHhHhCCC--------cEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          93 ITIKDLFHHITRKIGKK--------PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        93 ~~~~~l~~~lk~~l~~~--------~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      |.+.||.+.|.+.+...        .+.+++ +++|+||++|-=.-.+.+++|.+.|||++||
T Consensus         1 M~~~el~~~l~~~~~~~~~~d~d~~GL~vg~-~~~V~kI~v~lD~t~~vi~~A~~~g~dlIIt   62 (247)
T d1nmpa_           1 MKNTELEQLINEKLNSAAISDYAPNGLQVEG-KETVQKIVTGVTASQALLDEAVRLGADAVIV   62 (247)
T ss_dssp             CBHHHHHHHHHHHTTCTTCCCSSCCEEEECC-CSBCCEEEEEEECCHHHHHHHHHTTCSEEEE
T ss_pred             CcHHHHHHHHHhhcCHhhccCCCCCceEeCC-ccccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence            46789999999998753        466665 4789999999999999999999999999998

>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Nif3-related protein BC4286
species: Bacillus cereus [TaxId: 1396]

Probab=95.22  E-value=0.017  Score=46.30  Aligned_cols=54  Identities=19%  Similarity=0.267  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388          94 TIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS  147 (159)
Q Consensus        94 ~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT  147 (159)
                      +..|+++.+.+.+..        ..+.+|+.+++|++|++|--.-.+.+++|.+.|||++||
T Consensus         3 ~~~eii~~le~~~P~~lAe~wDnvGL~vg~~~~~V~~I~valD~t~~vi~eAi~~~adlIIt   64 (370)
T d2gx8a1           3 NGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIA   64 (370)
T ss_dssp             BHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCCEEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred             CHHHHHHHHHHhCCHhHcccCCCCeEEeCCCCCccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence            578888888887643        256778888899999999999999999999999999998