Psyllid ID: psy2398
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 433 | 2.2.26 [Sep-21-2011] | |||||||
| P49109 | 533 | Dimethylaniline monooxyge | no | N/A | 0.916 | 0.744 | 0.286 | 2e-38 | |
| P50285 | 532 | Dimethylaniline monooxyge | no | N/A | 0.771 | 0.627 | 0.320 | 2e-38 | |
| Q04799 | 533 | Dimethylaniline monooxyge | no | N/A | 0.914 | 0.742 | 0.292 | 2e-37 | |
| P16549 | 532 | Dimethylaniline monooxyge | yes | N/A | 0.900 | 0.733 | 0.300 | 3e-37 | |
| P97872 | 533 | Dimethylaniline monooxyge | no | N/A | 0.926 | 0.752 | 0.286 | 3e-37 | |
| P36365 | 532 | Dimethylaniline monooxyge | no | N/A | 0.771 | 0.627 | 0.317 | 5e-37 | |
| P17635 | 535 | Dimethylaniline monooxyge | no | N/A | 0.826 | 0.669 | 0.289 | 1e-36 | |
| Q8HZ69 | 535 | Dimethylaniline monooxyge | N/A | N/A | 0.826 | 0.669 | 0.301 | 3e-36 | |
| Q8HZ70 | 535 | Dimethylaniline monooxyge | yes | N/A | 0.826 | 0.669 | 0.301 | 3e-36 | |
| Q99518 | 471 | Dimethylaniline monooxyge | yes | N/A | 0.826 | 0.760 | 0.301 | 3e-36 |
| >sp|P49109|FMO5_CAVPO Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Cavia porcellus GN=FMO5 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/440 (28%), Positives = 210/440 (47%), Gaps = 43/440 (9%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW----NSQASCGRVYPSLHLISP 64
++ +IGGG G+ + E + +E +D+GG+W N + +Y S+ + +
Sbjct: 5 RIAVIGGGVSGLSSIKCCLEEGLEPVCFERSADIGGLWRFQENPEEGRASIYKSVIINTS 64
Query: 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---- 120
K DYP+PD+YP + ++S +L+Y R YAK+F + + F T V N+++ D
Sbjct: 65 KEMMCFSDYPIPDHYPNFMHNSHVLEYFRMYAKEFGLLKYIQFKTTVCNVKKRPDFSTSG 124
Query: 121 -WEVELSNGKKKK---YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIR 172
WEV + K K +D + VC G A P ++ G F G+ HS DYK+P+
Sbjct: 125 QWEVVTEHEGKTKVDVFDAVMVCTGHHTNAHLPLESFPGIEKFKGQYFHSRDYKNPEAFT 184
Query: 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY--------HYYPKFIDGKPTPQWML 224
KRV+++G GNSG D+AV+ SH +++V+ STRRG H YP + + L
Sbjct: 185 GKRVVIIGIGNSGGDLAVEISHTAKQVFLSTRRGSWILNRVGKHGYPTDVLLSSRFTYFL 244
Query: 225 Q--LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGD 282
LG S+ AY+++ FD +GL KP H + HP +N + I G
Sbjct: 245 SKILGQSLSN-----AYVEKQMN-ERFDHEMFGL-KPKHRAMSQHPTVNDDLPNRIIAGM 297
Query: 283 ILPKDDIKNLNGNIVHFVDDTHI-EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHI 341
+ K ++K F D + ++D +I+ATGY+ FPF++ K + L+ +
Sbjct: 298 VKVKGNVKEFTETAAIFEDGSREDDIDAVIFATGYSFDFPFLEDSVKVVKNKV-SLYKKV 356
Query: 342 APRNLD--NIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF--IRKSKGYLKFLNAKKNDN 397
P NL+ + G + + LQG R +Q F ++ + +
Sbjct: 357 FPPNLERPTLAIIGLIQPLGAIMPISELQG---RWAVQVFKGLKTLPSQSEMMAEITKAQ 413
Query: 398 PDLGQDYFIDSHRHLWEVDF 417
++ + Y +DS RH + D+
Sbjct: 414 EEIAKRY-VDSQRHTIQGDY 432
|
In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Cavia porcellus (taxid: 10141) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 8 |
| >sp|P50285|FMO1_MOUSE Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Mus musculus GN=Fmo1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 184/362 (50%), Gaps = 28/362 (7%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW--NSQASCGR--VYPSLHLISP 64
++ I+G G G+ + E + +E SDLGG+W GR +Y S+ S
Sbjct: 4 RVAIVGAGVSGLASIKCCLEEGLEPTCFERSSDLGGLWRFTEHVEEGRASLYKSVVSNSS 63
Query: 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---- 120
+ + PD+P P++YP + +S+ L+YL+ Y+ +F++ FNT+V ++ + D
Sbjct: 64 REMSCYPDFPFPEDYPNFVPNSLFLEYLKLYSTQFNLQRCIYFNTKVCSITKRPDFAVSG 123
Query: 121 -WEV-ELSNGKKKK--YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIR 172
WEV ++NGK+ +D + VC G P ++ G F GE HS YK PD +
Sbjct: 124 QWEVVTVTNGKQNSAIFDAVMVCTGFLTNPHLPLDSFPGILTFKGEYFHSRQYKHPDIFK 183
Query: 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFID-GKPTPQWMLQLGNKFS 231
+KRVLVVG GNSG DIAV+ASH ++KV+ ST G + D G P W + +F
Sbjct: 184 DKRVLVVGMGNSGTDIAVEASHLAKKVFLSTTGGAWVISRVFDSGYP---WDMIFMTRFQ 240
Query: 232 SKEETMAYIKQVFKLAG------FDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP 285
+ + V L F+ V+YG+ P+ P++N ++ I G +
Sbjct: 241 NMLRNLLPTPIVSWLISKKMNSWFNHVNYGV-APEDRTQLREPVLNDELPGRIITGKVFI 299
Query: 286 KDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPR 344
K IK + N V F + E +D I++ATGY FPF+D+ ++ + G L+ +I P
Sbjct: 300 KPSIKEVKENSVVFNNTPKEEPIDIIVFATGYTFAFPFLDESVVKVEDGQASLYKYIFPA 359
Query: 345 NL 346
+L
Sbjct: 360 HL 361
|
This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Form I catalyzes the N-oxygenation of secondary and tertiary amines. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|Q04799|FMO5_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Oryctolagus cuniculus GN=FMO5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 214/441 (48%), Gaps = 45/441 (10%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASC--GR--VYPSLHLISP 64
++ +IG G G+ + E + +E D+GG+W Q S GR +Y S+ + +
Sbjct: 5 RVAVIGAGASGLACIKCCLEEGLEPVCFERTDDIGGLWRFQESPDEGRASIYKSVIINTS 64
Query: 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---- 120
K DYP+PD++P + ++S +L+Y R YAK+F + + F T V ++++ D
Sbjct: 65 KEMMCFSDYPIPDHFPNFMHNSQVLEYFRMYAKEFGLLKYIQFKTTVCSVKKRPDFSTSG 124
Query: 121 -WEV-ELSNGKKKK--YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIR 172
WEV GKK+ +D + VC G A P ++ G F G+ LHS DYK+P++
Sbjct: 125 QWEVLTECEGKKESAVFDGVLVCTGHHTSAHLPLESFPGIEKFKGQYLHSRDYKNPEKFT 184
Query: 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFID-GKPTPQWMLQLGNKFS 231
KRV+V+G GNSG D+AV+ SH +++V+ STRRG + D G P + L ++FS
Sbjct: 185 GKRVIVIGIGNSGGDLAVEISHTAKQVFLSTRRGAWIMNRVGDHGYPID---ILLSSRFS 241
Query: 232 S--KEETMAYIKQVF---KL-AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP 285
K+ T I F K+ FD +GL KP H + HP +N + I G +
Sbjct: 242 QFLKKITGETIANSFLERKMNQRFDHAMFGL-KPKHRALSQHPTVNDDLPNRIISGSVKI 300
Query: 286 KDDIKNLNGNIVHFVDDTHI-EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPR 344
K ++K F D + ++D +I+ATGY+ FPF++ K + L+ + P
Sbjct: 301 KGNVKEFTETAAIFEDGSREDDIDAVIFATGYSFSFPFLEDSVKVVKNKV-SLYKKVFPP 359
Query: 345 NLD--NIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQ 402
NL+ + G + + LQ ++ + LK L ++ ++ Q
Sbjct: 360 NLEKPTLAIIGLIQPLGAIMPISELQARWATLVFKG--------LKTLPSQSEMMTEISQ 411
Query: 403 ------DYFIDSHRHLWEVDF 417
+++S RH + D+
Sbjct: 412 VQEKMAKRYVESQRHTIQGDY 432
|
In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P16549|FMO1_PIG Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Sus scrofa GN=FMO1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 202/416 (48%), Gaps = 26/416 (6%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW--NSQASCGR--VYPSLHLISP 64
++ I+G G G+ + E + +E DLGG+W GR +Y S+ S
Sbjct: 4 RVAIVGAGVSGLASIKCCLEEGLEPTCFERSDDLGGLWRFTEHVEEGRASLYKSVVSNSC 63
Query: 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---- 120
K + PD+P P++YP Y +S L+YLR YA +F++ F T+V ++ ++ED
Sbjct: 64 KEMSCYPDFPFPEDYPNYVPNSHFLEYLRMYANQFNLLKCIQFKTKVCSVTKHEDFNTTG 123
Query: 121 -WEV-ELSNGKKKK--YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIR 172
W+V L GK++ +D + VC G P ++ G F G+ HS YK PD +
Sbjct: 124 QWDVVTLCEGKQESAVFDAVMVCTGFLTNPYLPLDSFPGINTFKGQYFHSRQYKHPDIFK 183
Query: 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFID-GKPTPQ-WMLQLGNKF 230
+K VLVVG GNSG DIAV+ASH ++KV+ ST G + D G P +M + N F
Sbjct: 184 DKSVLVVGMGNSGTDIAVEASHLAKKVFLSTTGGAWVISRVFDSGYPWDMVFMTRFQNMF 243
Query: 231 SSKEETMAYIKQVFKL--AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDD 288
+ T + K + F+ +YGL P+ + P++N ++ I G +L K
Sbjct: 244 RNSLPTPIVNWLIAKKMNSWFNHANYGL-IPEDRIQLREPVLNDELPGRIITGKVLIKPS 302
Query: 289 IKNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLD 347
IK + N V F E +D I++ATGY FPF+D+ ++ + G L+ +I P +L
Sbjct: 303 IKEVKENSVVFNSSPEEEPIDIIVFATGYTFAFPFLDESVVKVEDGQASLYKYIFPAHLQ 362
Query: 348 --NIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF--IRKSKGYLKFLNAKKNDNPD 399
+ G + L Q ++ ++ + S ++ +N +K + P
Sbjct: 363 KPTLAVIGLIKPLGSLLPTGDTQARWAVRVLKGVNKLPPSSVMIQEVNTRKENKPS 418
|
This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P97872|FMO5_MOUSE Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Mus musculus GN=Fmo5 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/436 (28%), Positives = 210/436 (48%), Gaps = 35/436 (8%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASC--GR--VYPSLHLISP 64
++ +IG G G+ + E + +E D+GG+W Q + GR +Y S+ + +
Sbjct: 5 RIAVIGAGASGLTCIKCCLEEGLEPVCFERSGDIGGLWRFQEAPEEGRASIYQSVVINTS 64
Query: 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---- 120
K DYP+PD+YP Y ++S +L+Y R YAK+FD+ + F T V ++++ D
Sbjct: 65 KEMMCFSDYPIPDHYPNYMHNSQVLEYFRMYAKEFDLLKYIQFKTTVCSVKKQPDFSTSG 124
Query: 121 -WEVELSNGKKKK---YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIR 172
W+V K++ +D + VC G A P ++ G F G+ HS DYK+P +
Sbjct: 125 QWQVVTECEGKQQVDVFDGVLVCTGHHTDAHLPLESFPGIEKFKGKYFHSRDYKNPVEFT 184
Query: 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY--------HYYPKFIDGKPTPQWML 224
KRV+V+G GNSG D+AV+ SH +++V+ STRRG H YP ID + + M
Sbjct: 185 GKRVIVIGIGNSGGDLAVEISHTAKQVFLSTRRGAWILNRVGKHGYP--IDLLLSSRIMY 242
Query: 225 QLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL 284
L + KQ+ + FD +GL KP H + HP +N + I G +
Sbjct: 243 YLSRICGPSLKNNYMEKQMNQ--RFDHEMFGL-KPKHRALSQHPTVNDDLPNRIIAGLVK 299
Query: 285 PKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAP 343
K ++K F D + + +D +I+ATGY+ FPF++ K + L+ + P
Sbjct: 300 VKGNVKEFTETAAVFEDGSREDGIDVVIFATGYSFAFPFLEDSVKVVKNKV-SLYKKVFP 358
Query: 344 RNLD--NIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLG 401
NL+ + G + + LQG++ + ++K + + ++
Sbjct: 359 PNLEKPTLAIIGLIQPLGAIMPISELQGRWATQVFKG-LKKLPSQSEMMAEINKAREEMA 417
Query: 402 QDYFIDSHRHLWEVDF 417
+ Y +DS RH + D+
Sbjct: 418 KRY-VDSQRHTIQGDY 432
|
In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P36365|FMO1_RAT Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Rattus norvegicus GN=Fmo1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 183/362 (50%), Gaps = 28/362 (7%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW--NSQASCGR--VYPSLHLISP 64
++ I+G G G+ + E + +E DLGG+W GR +Y S+ S
Sbjct: 4 RVAIVGAGVSGLASIKCCLEEGLEPTCFERSCDLGGLWRFTEHVEEGRASLYNSVVSNSS 63
Query: 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---- 120
K + D+P P++YP + +S+ L+YL+ YA +F++ FNT+V ++ + D
Sbjct: 64 KEMSCYSDFPFPEDYPNFVPNSLFLEYLQLYATQFNLLRCIYFNTKVCSITKRPDFAVSG 123
Query: 121 -WEV-ELSNGKKKK--YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIR 172
WEV + GK+ +D + VC G P ++ G F G+ HS YK PD +
Sbjct: 124 QWEVVTVCQGKQSSDTFDAVMVCTGFLTNPHLPLDSFPGIQTFKGQYFHSRQYKHPDVFK 183
Query: 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFID-GKPTPQWMLQLGNKFS 231
+KRVLVVG GNSG DIAV+ASH ++KV+ ST G + D G P W + +F
Sbjct: 184 DKRVLVVGMGNSGTDIAVEASHLAKKVFLSTTGGAWVISRVFDSGYP---WDMIFMTRFQ 240
Query: 232 SKEETMAYIKQVFKL------AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP 285
+ + V L + F+ V+YG+ P+ P++N ++ I G +L
Sbjct: 241 NMLRNLLPTPVVSWLISKKMNSWFNHVNYGV-APEDRTQLREPVLNDELPGRIITGKVLI 299
Query: 286 KDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPR 344
K IK + N V F + E +D I++ATGY+ FPF+D+ ++ + G L+ +I P
Sbjct: 300 KPSIKEVKENSVVFNNTPKEEPIDVIVFATGYSFAFPFLDESIVKVEDGQASLYKYIFPA 359
Query: 345 NL 346
+L
Sbjct: 360 HL 361
|
This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Form I catalyzes the N-oxygenation of secondary and tertiary amines. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P17635|FMO2_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Oryctolagus cuniculus GN=FMO2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 194/390 (49%), Gaps = 32/390 (8%)
Query: 9 KLCIIGGGPLG-IGLGRELSEGNINYDLYEMESDLGGVW----NSQASCGRVYPSLHLIS 63
K+ +IG G G I L + EG + +E D+GG+W N + +Y S+ +
Sbjct: 4 KVAVIGAGVSGLISLKCCVDEG-LEPTCFERTEDIGGLWRFKENVEDGRASIYQSVITNT 62
Query: 64 PKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--- 120
K + D+PMP+++P + ++S +L+Y R +AKKFD+ + F T VI++++ D
Sbjct: 63 SKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVISVKKRPDFASS 122
Query: 121 --WEVELSNGKKKK---YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQI 171
WEV + K++ +D + VC+G + P ++ G F G+ HS YK P +
Sbjct: 123 GQWEVVTQSNSKQQSAVFDAVMVCSGHHILPNIPLKSFPGIEKFKGQYFHSRQYKHPAGL 182
Query: 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI-DGKPTPQWMLQLGNKF 230
KR+LV+G GNS DIAV+ S + +VY STR+G + DG P W + +F
Sbjct: 183 EGKRILVIGIGNSASDIAVELSKKAAQVYISTRKGSWVMSRISEDGYP---WDMVFHTRF 239
Query: 231 SSK------EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL 284
SS + ++ + F+ +YGL P++ P++N + I +G I
Sbjct: 240 SSMLRNVLPRMIVKWMMEQQMNRWFNHENYGL-APENKYLMKEPVLNDDLPSRILYGTIK 298
Query: 285 PKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAP 343
K +K L + F D T E +D I++ATGY FPF+++ ++ + + L+ ++ P
Sbjct: 299 VKRRVKELTESAAIFEDGTVEEDIDVIVFATGYTFAFPFLEESLVKIEDNMVSLYKYMFP 358
Query: 344 RNLDNIFF--FGFVNAAAGLGDGLRLQGQF 371
L+ F G + + + LQ ++
Sbjct: 359 PQLEKSTFACLGLIQPLGSIFPTVELQARW 388
|
This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|Q8HZ69|FMO2_GORGO Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Gorilla gorilla gorilla GN=FMO2 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 193/392 (49%), Gaps = 34/392 (8%)
Query: 9 KLCIIGGGPLG-IGLGRELSEGNINYDLYEMESDLGGVW----NSQASCGRVYPSLHLIS 63
K+ +IG G G I L + EG + +E D+GGVW N + +Y S+ +
Sbjct: 4 KVAVIGAGVSGLISLKCCVDEG-LEPTCFERTEDIGGVWRFKENVEDGRASIYQSVVTNT 62
Query: 64 PKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--- 120
K + D+PMP+++P + ++S +L+Y R +AKKFD+ + F T V+++ + D
Sbjct: 63 SKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVLSVRKCPDFSSS 122
Query: 121 --WEV-ELSNGKKKK--YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQI 171
W+V SNGK++ +D + VC+G + P ++ G F G+ HS YK PD
Sbjct: 123 GQWKVVTQSNGKEQNAVFDAVMVCSGHHILPHIPLKSFPGIERFKGQYFHSRQYKHPDGF 182
Query: 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI-DGKPTPQWMLQLGNKF 230
KR+LV+G GNSG DIAV+ S ++ +V+ STR G + DG P W +F
Sbjct: 183 EGKRILVIGMGNSGSDIAVELSKNAAQVFISTRHGTWVMSRISEDGYP---WDAVFHTRF 239
Query: 231 SS-------KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDI 283
S + I+Q F+ +YGL +P + P++N + + G I
Sbjct: 240 RSMLRNVLPRTAVKWMIEQQMN-RWFNHENYGL-EPQNKYIMKEPVLNDDVPSRLLCGAI 297
Query: 284 LPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA 342
K +K L F D T E +D II+ATGY+ FPF++ ++ + + L+ +I
Sbjct: 298 KVKSTVKELTETSAIFEDGTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMVSLYKYIF 357
Query: 343 PRNLD--NIFFFGFVNAAAGLGDGLRLQGQFI 372
P +LD + G + + LQ +++
Sbjct: 358 PAHLDKSTLACIGLIQPLGSIFPTAELQARWV 389
|
This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Gorilla gorilla gorilla (taxid: 9595) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|Q8HZ70|FMO2_PANTR Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Pan troglodytes GN=FMO2 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 193/392 (49%), Gaps = 34/392 (8%)
Query: 9 KLCIIGGGPLG-IGLGRELSEGNINYDLYEMESDLGGVW----NSQASCGRVYPSLHLIS 63
K+ +IG G G I L + EG + +E D+GGVW N + +Y S+ +
Sbjct: 4 KVAVIGAGVSGLISLKCCVDEG-LEPTCFERTEDIGGVWRFKENVEDGRASIYQSVITNT 62
Query: 64 PKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--- 120
K + D+PMP+++P + ++S +L+Y R +AKKFD+ + F T V+++ + D
Sbjct: 63 SKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVLSVRKCPDFSSS 122
Query: 121 --WEV-ELSNGKKKK--YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQI 171
W+V SNGK++ +D + VC+G + P ++ G F G+ HS YK PD
Sbjct: 123 GQWKVVTQSNGKEQSAVFDAVMVCSGHHILPHIPLKSFPGIERFKGQYFHSRQYKHPDGF 182
Query: 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI-DGKPTPQWMLQLGNKF 230
KR+LV+G GNSG DIAV+ S ++ +V+ STR G + DG P W +F
Sbjct: 183 EGKRILVIGMGNSGSDIAVELSKNAAQVFISTRHGTWVMSRISEDGYP---WDSVFHTRF 239
Query: 231 SS-------KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDI 283
S + I+Q F+ +YGL +P + P++N + + G I
Sbjct: 240 RSMLRNVLPRTAVKWMIEQQMN-RWFNHENYGL-EPQNKYIMKEPVLNDDVPSRLLCGAI 297
Query: 284 LPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA 342
K +K L F D T E +D II+ATGY+ FPF++ ++ + + L+ +I
Sbjct: 298 KVKSTVKELTETSAIFEDGTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMVSLYKYIF 357
Query: 343 PRNLD--NIFFFGFVNAAAGLGDGLRLQGQFI 372
P +LD + G + + LQ +++
Sbjct: 358 PAHLDKSTLACIGLIQPLGSIFPTAELQARWV 389
|
This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Pan troglodytes (taxid: 9598) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|Q99518|FMO2_HUMAN Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Homo sapiens GN=FMO2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 193/392 (49%), Gaps = 34/392 (8%)
Query: 9 KLCIIGGGPLG-IGLGRELSEGNINYDLYEMESDLGGVW----NSQASCGRVYPSLHLIS 63
K+ +IG G G I L + EG + +E D+GGVW N + +Y S+ +
Sbjct: 4 KVAVIGAGVSGLISLKCCVDEG-LEPTCFERTEDIGGVWRFKENVEDGRASIYQSVVTNT 62
Query: 64 PKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--- 120
K + D+PMP+++P + ++S +L+Y R +AKKFD+ + F T V+++ + D
Sbjct: 63 SKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVLSVRKCPDFSSS 122
Query: 121 --WEV-ELSNGKKKK--YDFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQI 171
W+V SNGK++ +D + VC+G + P ++ G F G+ HS YK PD
Sbjct: 123 GQWKVVTQSNGKEQSAVFDAVMVCSGHHILPHIPLKSFPGMERFKGQYFHSRQYKHPDGF 182
Query: 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI-DGKPTPQWMLQLGNKF 230
KR+LV+G GNSG DIAV+ S ++ +V+ STR G + DG P W +F
Sbjct: 183 EGKRILVIGMGNSGSDIAVELSKNAAQVFISTRHGTWVMSRISEDGYP---WDSVFHTRF 239
Query: 231 SS-------KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDI 283
S + I+Q F+ +YGL +P + P++N + + G I
Sbjct: 240 RSMLRNVLPRTAVKWMIEQQMN-RWFNHENYGL-EPQNKYIMKEPVLNDDVPSRLLCGAI 297
Query: 284 LPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA 342
K +K L F D T E +D II+ATGY+ FPF++ ++ + + L+ +I
Sbjct: 298 KVKSTVKELTETSAIFEDGTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMVSLYKYIF 357
Query: 343 PRNLD--NIFFFGFVNAAAGLGDGLRLQGQFI 372
P +LD + G + + LQ +++
Sbjct: 358 PAHLDKSTLACIGLIQPLGSIFPTAELQARWV 389
|
Catalyzes the N-oxidation of certain primary alkylamines to their oximes via an N-hydroxylamine intermediate. Inactive toward certain tertiary amines, such as imipramine or chloropromazine. Can catalyze the S-oxidation of methimazole. The truncated form is catalytically inactive. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 433 | ||||||
| 44662943 | 433 | putative FAD-dependent monooxygenase [sy | 0.990 | 0.990 | 0.777 | 0.0 | |
| 417353262 | 441 | Flavin-dependent monooxygenase [Serratia | 0.981 | 0.963 | 0.599 | 1e-159 | |
| 270261889 | 434 | hypothetical protein SOD_b00960 [Serrati | 0.981 | 0.979 | 0.592 | 1e-156 | |
| 242238865 | 434 | flavin-containing monooxygenase [Dickeya | 0.981 | 0.979 | 0.599 | 1e-156 | |
| 417353286 | 434 | Flavin-dependent monooxygenase [Serratia | 0.981 | 0.979 | 0.590 | 1e-156 | |
| 407782426 | 444 | flavin-containing monooxygenase [Oceanib | 0.995 | 0.970 | 0.593 | 1e-152 | |
| 144897325 | 433 | flavin-containing monooxygenase [Magneto | 0.942 | 0.942 | 0.6 | 1e-151 | |
| 334130842 | 445 | Putative flavin-containing monooxygenase | 0.928 | 0.903 | 0.439 | 1e-106 | |
| 117168596 | 439 | AmbI [Sorangium cellulosum] | 0.937 | 0.924 | 0.444 | 1e-102 | |
| 240141783 | 430 | putative flavin-containing monooxygenase | 0.965 | 0.972 | 0.439 | 1e-102 |
| >gi|44662943|gb|AAS47561.1| putative FAD-dependent monooxygenase [symbiont bacterium of Paederus fuscipes] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/431 (77%), Positives = 381/431 (88%), Gaps = 2/431 (0%)
Query: 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP 64
N+ +LCIIGGGPLGIGLGRELSEG I+YDLYE ESDLGGVWN + CGRVYPSLHLISP
Sbjct: 2 NQKFRLCIIGGGPLGIGLGRELSEGAIDYDLYEAESDLGGVWNREGKCGRVYPSLHLISP 61
Query: 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVE 124
KFNTQVPDYPMPD+YPVYPNH MML Y+RSYA+ F VY H+IFNT V LE + WEVE
Sbjct: 62 KFNTQVPDYPMPDHYPVYPNHKMMLAYMRSYARDFGVYEHAIFNTSVTRLEPDGEGWEVE 121
Query: 125 LSNGKKKKYDFIAVCNGAQRVARYPN--YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAG 182
LS+G++K+Y+ +AVCNGAQRVAR+P+ + G F G++LHSMDYKSPD +R+KRVLVVGAG
Sbjct: 122 LSSGERKRYEVVAVCNGAQRVARFPDPPHPGTFQGKVLHSMDYKSPDLVRDKRVLVVGAG 181
Query: 183 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242
NSGCDIAVDASHH+E+VYHSTRRGYHY+PKFIDGKPTPQWMLQLGNKF +KE+T+AY++Q
Sbjct: 182 NSGCDIAVDASHHAEQVYHSTRRGYHYFPKFIDGKPTPQWMLQLGNKFETKEQTLAYMQQ 241
Query: 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDD 302
VFK+AGFDG+DYGLKKPDHPLD AHPIMNSQILYHIGHGDILPKD+I+ GN V F+D
Sbjct: 242 VFKVAGFDGMDYGLKKPDHPLDGAHPIMNSQILYHIGHGDILPKDNIEYFEGNTVFFIDG 301
Query: 303 THIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLG 362
T +VD IIYATGY+R FPFID LEWK G+PDLFIHI PRNLDNIFFFGFVNAAAGLG
Sbjct: 302 TKADVDLIIYATGYDRDFPFIDHALLEWKDGLPDLFIHIVPRNLDNIFFFGFVNAAAGLG 361
Query: 363 DGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIK 422
DGLRLQGQF+RSY++A +KSKGY KF+ K+NDNPDLGQDYF+DSHRH WEVDFWKFIK
Sbjct: 362 DGLRLQGQFVRSYVRALQQKSKGYFKFIQTKQNDNPDLGQDYFLDSHRHRWEVDFWKFIK 421
Query: 423 CARMYRDMLDE 433
CAR YR+MLDE
Sbjct: 422 CARRYREMLDE 432
|
Source: symbiont bacterium of Paederus fuscipes Species: symbiont bacterium of Paederus fuscipes Genus: Family: Order: Class: Phylum: Superkingdom: Bacteria |
| >gi|417353262|gb|AFX60310.1| Flavin-dependent monooxygenase [Serratia marcescens] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 256/427 (59%), Positives = 330/427 (77%), Gaps = 2/427 (0%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT 68
++CIIGGGP G+ LG+EL++G I+YDLYE ESD GGVWN+ + CGR YPSLHLISPK NT
Sbjct: 14 RVCIIGGGPYGVSLGKELNQGGIDYDLYEAESDFGGVWNADSRCGRTYPSLHLISPKVNT 73
Query: 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG 128
Q PD+PMP++YP YPNH++M Y+R YA+ F VY + FN V+ +E ++ W+VELS G
Sbjct: 74 QYPDFPMPEDYPHYPNHTLMQQYIRHYARTFGVYEKAHFNVAVVRIEPQDNGWQVELSTG 133
Query: 129 KKKKYDFIAVCNGAQRVARYPN--YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGC 186
++K Y F+ V NG QR ARYP Y G+F+G+I+HS+DY++P++I+ KRVL++GAGNSGC
Sbjct: 134 ERKFYSFVLVSNGMQREARYPEPAYRGHFTGDIMHSIDYRTPERIKGKRVLIIGAGNSGC 193
Query: 187 DIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL 246
DIAVDA HH + VYHSTRRGY+Y PKFI+G PTP+WM LGNKF ++EET+AYI+QVFKL
Sbjct: 194 DIAVDAVHHCQAVYHSTRRGYYYQPKFINGLPTPRWMEGLGNKFDTREETLAYIQQVFKL 253
Query: 247 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE 306
AG+DG D+GLKKPD+PLDA+HPIMNSQ+LY IGHGDI PK D++ N V F D +H+E
Sbjct: 254 AGYDGTDFGLKKPDYPLDASHPIMNSQLLYFIGHGDIQPKGDVREFRDNTVIFDDGSHVE 313
Query: 307 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLR 366
VDT+IYATGYNR FPF+D + LE K GIPD F+HI P+N +N+ F G++N+A GLG R
Sbjct: 314 VDTLIYATGYNRRFPFLDSKYLELKNGIPDCFLHIVPKNFNNLLFVGYINSATGLGVSAR 373
Query: 367 LQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARM 426
G F+ Y++A+ +S G F KK NPDLGQ Y+I S RH WEVD WKF+K
Sbjct: 374 SHGLFVVDYLKAYFTQSAGLHDFTRMKKEQNPDLGQHYYIGSFRHQWEVDLWKFLKLLAQ 433
Query: 427 YRDMLDE 433
YR++L+
Sbjct: 434 YREVLNR 440
|
Source: Serratia marcescens Species: Serratia marcescens Genus: Serratia Family: Enterobacteriaceae Order: Enterobacteriales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|270261889|ref|ZP_06190161.1| hypothetical protein SOD_b00960 [Serratia odorifera 4Rx13] gi|270043765|gb|EFA16857.1| hypothetical protein SOD_b00960 [Serratia odorifera 4Rx13] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 253/427 (59%), Positives = 329/427 (77%), Gaps = 2/427 (0%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT 68
++CIIGGGP G+ LG+EL++G I+YDLYE ESD GGVWN+ + CGR YPSLHLISPK NT
Sbjct: 7 RVCIIGGGPYGVSLGKELNQGGIDYDLYEAESDFGGVWNADSRCGRTYPSLHLISPKVNT 66
Query: 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG 128
Q PD+PMP++YP YPNH +M Y+ YA+ F VY + FN V +E ++ W+VELS G
Sbjct: 67 QYPDFPMPEDYPHYPNHKLMHQYVCHYARTFGVYEKAHFNVAVTRIEPQDNGWQVELSTG 126
Query: 129 KKKKYDFIAVCNGAQRVARYPN--YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGC 186
++K Y F+ V NG QR ARYP Y G+F+G+I+HS+DY++P++I+ KRVL++GAGNSGC
Sbjct: 127 ERKFYSFVLVSNGMQREARYPEPAYRGHFTGDIMHSIDYRTPERIKGKRVLIIGAGNSGC 186
Query: 187 DIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL 246
DIAVDA HH + VYHSTRRGY+Y PKFI+G PTP+WM LGNKF+++EET+AYI+QVFKL
Sbjct: 187 DIAVDAVHHCQAVYHSTRRGYYYQPKFINGMPTPRWMEGLGNKFNTREETLAYIQQVFKL 246
Query: 247 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE 306
AG+DG D+GLKKPD+PLDA+HPIMNSQ+LY IGHGDI PK D+ N V F D +H+E
Sbjct: 247 AGYDGTDFGLKKPDYPLDASHPIMNSQLLYFIGHGDIQPKVDVSEFRDNTVIFEDGSHVE 306
Query: 307 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLR 366
VDT+IYATGY+R FPF+D + L+ K GIPD F+HI P+N +N+ F G++N+A GLG R
Sbjct: 307 VDTLIYATGYHRRFPFLDSKYLDMKNGIPDCFLHIVPKNFNNLLFVGYINSATGLGVSAR 366
Query: 367 LQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARM 426
G F+ Y++A+ +S+G F KK NPDLGQ+Y+I S RH WEVD WKF+K
Sbjct: 367 SHGLFVVDYLKAYFAQSQGLHDFTRIKKEQNPDLGQNYYIGSFRHQWEVDLWKFLKLLAQ 426
Query: 427 YRDMLDE 433
YR++L+
Sbjct: 427 YREVLNR 433
|
Source: Serratia odorifera 4Rx13 Species: Serratia plymuthica Genus: Serratia Family: Enterobacteriaceae Order: Enterobacteriales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|242238865|ref|YP_002987046.1| flavin-containing monooxygenase [Dickeya dadantii Ech703] gi|242130922|gb|ACS85224.1| Flavin-containing monooxygenase [Dickeya dadantii Ech703] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 256/427 (59%), Positives = 324/427 (75%), Gaps = 2/427 (0%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT 68
++CIIGGGP G+ LG+EL++ I+YDLYE ESD GGVWN+ + CGR YPSLHLISPK NT
Sbjct: 7 RVCIIGGGPYGVSLGKELNQAGIDYDLYEAESDFGGVWNADSRCGRTYPSLHLISPKVNT 66
Query: 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG 128
Q PD+PMP++YP YP+H +M Y+ YAK F VY + FN V +E D W+VELS G
Sbjct: 67 QYPDFPMPEDYPHYPSHKLMHRYVCDYAKTFGVYEKAHFNVAVTRIEPQADGWQVELSTG 126
Query: 129 KKKKYDFIAVCNGAQRVARYPN--YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGC 186
++K Y F+ V NG QR ARYP Y G+F+GE++HS+DY++P++I+ KRVL++GAGNSGC
Sbjct: 127 ERKFYAFVLVSNGMQREARYPEPAYPGHFTGEVMHSIDYRTPERIKGKRVLIIGAGNSGC 186
Query: 187 DIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL 246
DIAVDA HH VYHSTRRGY+Y PKFI+G PTP+WM LGNKF+++EET+AYI+QVFKL
Sbjct: 187 DIAVDAVHHCSAVYHSTRRGYYYQPKFINGMPTPRWMEGLGNKFNTREETIAYIQQVFKL 246
Query: 247 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE 306
AG+DG DYGLKKPD+PLDA+HPIMNSQ+LY IGHGDI K D+ N V F D +HI+
Sbjct: 247 AGYDGTDYGLKKPDYPLDASHPIMNSQLLYFIGHGDIQAKGDVSAFQDNTVFFEDGSHID 306
Query: 307 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLR 366
VDTIIYATGYNR F F+D + LE K GIPD F+HI P+N DN+ F G++N+A GLG R
Sbjct: 307 VDTIIYATGYNRRFSFLDNKYLEMKQGIPDCFLHIVPKNFDNLLFVGYINSATGLGVSAR 366
Query: 367 LQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARM 426
G F+ Y++A+ ++KG F KK +PDLGQ+Y+I S RH WEVD WKF+K
Sbjct: 367 SHGLFVVDYLKAYFLQAKGLHDFSQMKKEQDPDLGQNYYIGSFRHQWEVDLWKFLKLLAQ 426
Query: 427 YRDMLDE 433
YRD+L+
Sbjct: 427 YRDVLNR 433
|
Source: Dickeya dadantii Ech703 Species: Dickeya dadantii Genus: Dickeya Family: Enterobacteriaceae Order: Enterobacteriales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|417353286|gb|AFX60333.1| Flavin-dependent monooxygenase [Serratia plymuthica] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 252/427 (59%), Positives = 328/427 (76%), Gaps = 2/427 (0%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT 68
++CIIGGGP G+ LG+EL++G I+YDLYE ESD GGVWN+ + CGR YPSLHLISPK NT
Sbjct: 7 RVCIIGGGPYGVSLGKELNQGGIDYDLYEAESDFGGVWNADSRCGRTYPSLHLISPKVNT 66
Query: 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG 128
Q PD+PMP++YP YPNH +M Y+ YA+ F VY + FN V +E + W+VELS G
Sbjct: 67 QYPDFPMPEDYPHYPNHKLMHQYVCHYARTFGVYEKAHFNVAVTRIEPQDKGWQVELSTG 126
Query: 129 KKKKYDFIAVCNGAQRVARYPN--YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGC 186
++K Y F+ V NG QR ARYP Y G+F+G+I+HS+DY++P++I+ KRVL++GAGNSGC
Sbjct: 127 ERKFYSFVLVSNGMQREARYPESAYRGHFAGDIMHSIDYRTPERIKGKRVLIIGAGNSGC 186
Query: 187 DIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL 246
DIAVDA HH + VYHSTRRGY+Y PKFI+G PTP+WM LGNKF+++EET+AYI+QVFKL
Sbjct: 187 DIAVDAVHHCQAVYHSTRRGYYYQPKFINGMPTPRWMEGLGNKFNTREETLAYIQQVFKL 246
Query: 247 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE 306
AG+DG D+GLKKPD+PLDA+HPIMNSQ+LY IGHGDI PK D+ G+ V F D + +E
Sbjct: 247 AGYDGTDFGLKKPDYPLDASHPIMNSQLLYFIGHGDIQPKGDVSEFRGHTVIFEDGSQVE 306
Query: 307 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLR 366
VDT+IYATGY+R FPF+D + L+ K GIPD F+HI P+N +N+ F G++N+A GLG R
Sbjct: 307 VDTLIYATGYHRRFPFLDSKYLDMKNGIPDCFLHIVPKNFNNLLFVGYINSATGLGVSAR 366
Query: 367 LQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARM 426
G F+ Y++A+ +S+G F KK NPDLGQ+Y+I S RH WEVD WKF+K
Sbjct: 367 SHGLFVVDYLKAYFAQSQGLHDFTQMKKEQNPDLGQNYYIGSFRHQWEVDLWKFLKLLAQ 426
Query: 427 YRDMLDE 433
YR++L+
Sbjct: 427 YREVLNR 433
|
Source: Serratia plymuthica Species: Serratia plymuthica Genus: Serratia Family: Enterobacteriaceae Order: Enterobacteriales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|407782426|ref|ZP_11129638.1| flavin-containing monooxygenase [Oceanibaculum indicum P24] gi|407205791|gb|EKE75757.1| flavin-containing monooxygenase [Oceanibaculum indicum P24] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/433 (59%), Positives = 313/433 (72%), Gaps = 2/433 (0%)
Query: 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLH 60
M +N K+ IIGGGP GIG+ REL G + DLYE ESD GGVWN+ A+CGR Y SLH
Sbjct: 1 MTAVTRNAKVAIIGGGPTGIGVARELVAGGVEVDLYEAESDFGGVWNADAACGRAYESLH 60
Query: 61 LISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI 120
LISPKFNTQ PD+PMP++YP YPNH +ML Y+R +A+ +Y + F V LE D
Sbjct: 61 LISPKFNTQAPDFPMPEDYPPYPNHRLMLRYIRDFARASGLYERTRFEAPVQRLEPVGDQ 120
Query: 121 WEVELSNGKKKKYDFIAVCNGAQRVARYPN--YSGYFSGEILHSMDYKSPDQIRNKRVLV 178
W + + G Y + VCNG QRV P+ Y G F+GE+LHSMDYKS Q+ KRVLV
Sbjct: 121 WRLVTAAGHDALYPLVIVCNGLQRVPHLPDPAYPGSFAGEVLHSMDYKSGRQVAGKRVLV 180
Query: 179 VGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 238
+G GNSGCDIAVDA HH+ V+HSTRRGY+Y PKFIDGKPTPQWM++LGNKF KE+T+A
Sbjct: 181 IGGGNSGCDIAVDAVHHAASVHHSTRRGYYYQPKFIDGKPTPQWMMELGNKFPRKEDTLA 240
Query: 239 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVH 298
YI +VF+LAG+DG YGL PD+PLDAAHP+MNSQILYHIGHGD++PK D+ G V
Sbjct: 241 YIAEVFRLAGYDGAAYGLPAPDYPLDAAHPVMNSQILYHIGHGDVVPKGDVAAFEGRTVR 300
Query: 299 FVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA 358
F D + E D I+YATGY R FPF+DK LEWK GIPDLF+H PRN DN+ F GF+NAA
Sbjct: 301 FTDGSTAEFDVILYATGYKRDFPFLDKALLEWKSGIPDLFLHSTPRNHDNLLFMGFINAA 360
Query: 359 AGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFW 418
GLGDGL+ QG + +Y +A +++G FL AK+ DNPD+GQ YF+ S+RHLWE D W
Sbjct: 361 GGLGDGLKTQGLYALTYARALFGRTRGLEAFLKAKQTDNPDIGQGYFVPSYRHLWEADLW 420
Query: 419 KFIKCARMYRDML 431
K + R YRDML
Sbjct: 421 KLLAQMRRYRDML 433
|
Source: Oceanibaculum indicum P24 Species: Oceanibaculum indicum Genus: Oceanibaculum Family: Rhodospirillaceae Order: Rhodospirillales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|144897325|emb|CAM74189.1| flavin-containing monooxygenase [Magnetospirillum gryphiswaldense MSR-1] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 246/410 (60%), Positives = 304/410 (74%), Gaps = 2/410 (0%)
Query: 24 RELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83
REL +G I++DLYE E+D GGVWNS A+CGR Y SLHLISPKFNTQVPD+PMPD YPVYP
Sbjct: 21 RELIDGGIDFDLYEAEADFGGVWNSGAACGRTYDSLHLISPKFNTQVPDFPMPDEYPVYP 80
Query: 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143
NH ML Y+R+YA F + H+ FN + L + + W ++ G + YD + VC G
Sbjct: 81 NHKQMLAYIRAYADHFGLRRHARFNAPITRLTRQDQGWRLQSGAGHDQHYDLVVVCTGLH 140
Query: 144 RVARYPNY--SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH 201
R +P +G FSGE+LH+ DYKS DQ+R KRVLVVG GNSGCD A DA H + V+H
Sbjct: 141 REPLFPEPMPAGSFSGEVLHARDYKSLDQLRGKRVLVVGGGNSGCDFAADAVHGAAHVFH 200
Query: 202 STRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDH 261
STRRGY+Y PKFI GKPTPQWM++LG KF +++ETMAYI+QVFKLAG DG DYGL +PD+
Sbjct: 201 STRRGYYYQPKFIAGKPTPQWMMELGAKFKTRQETMAYIQQVFKLAGCDGTDYGLPQPDY 260
Query: 262 PLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFP 321
PLD AHP+MNS +LYHIGHGDI PK D++ NG V F D + E+D I+YATGY R FP
Sbjct: 261 PLDGAHPVMNSLLLYHIGHGDITPKPDLEGFNGKTVTFKDGSTAEIDLILYATGYRRDFP 320
Query: 322 FIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR 381
F+D+E LEWK GIPDLF+H PRN D++ F GF+N+AAGLGDGL+ QG F+ +Y +A
Sbjct: 321 FLDRELLEWKSGIPDLFLHSTPRNHDDLLFMGFINSAAGLGDGLKTQGLFVLNYARALAG 380
Query: 382 KSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDML 431
++ G KFL AK+ D PDLGQ+YF+ S+RHLWE D WK + R YRDML
Sbjct: 381 RTPGLQKFLAAKRADQPDLGQEYFVKSYRHLWEADLWKLLAHMRHYRDML 430
|
Source: Magnetospirillum gryphiswaldense MSR-1 Species: Magnetospirillum gryphiswaldense Genus: Magnetospirillum Family: Rhodospirillaceae Order: Rhodospirillales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|334130842|ref|ZP_08504612.1| Putative flavin-containing monooxygenase [Methyloversatilis universalis FAM5] gi|333443918|gb|EGK71875.1| Putative flavin-containing monooxygenase [Methyloversatilis universalis FAM5] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 259/403 (64%), Gaps = 1/403 (0%)
Query: 22 LGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV 81
L + LSE ++Y++ E S LGG W ++Y S+HLIS + NTQ D PMPD+YP
Sbjct: 20 LAKALSEAGLDYEVLEASSGLGGNWQPSGPASKMYASVHLISSRRNTQFSDLPMPDSYPH 79
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG 141
YP HS M YL S A+++ V H+ F+T V+ W EL++G ++Y + V NG
Sbjct: 80 YPRHSQMYAYLMSVAERYAVAAHTRFDTRVLRARPDGGGWRCELADGGVRRYAHLIVANG 139
Query: 142 AQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH 201
R+ P + G+F GE +HS DY+S DQ R KRVLVVG GNSGCDIAVDA+ +++ +H
Sbjct: 140 LLRIPLVPKFEGHFDGESVHSGDYRSADQFRGKRVLVVGGGNSGCDIAVDAALNADAAFH 199
Query: 202 STRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDH 261
STRRGYHY PKF+DG+PT +W++ + KF+ + ++ VFKLAG+DG D+GL PDH
Sbjct: 200 STRRGYHYMPKFVDGRPTQEWLMDIAPKFTDAQAYWDHVSAVFKLAGYDGTDFGLPAPDH 259
Query: 262 PLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFP 321
+DAAHPIMNSQ+LYHIGHGD+ P+ DI+ ++G V F D + ++D I++ATG+
Sbjct: 260 RIDAAHPIMNSQVLYHIGHGDLAPRPDIRRIDGRTVEFTDGSREQIDLILWATGFRTDLS 319
Query: 322 FIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR 381
F D + ++ + LF+ + P+ DN+ F G++N +GLG+ L + +F+ + + A I
Sbjct: 320 FFDPADFDARVDLDRLFLRMVPQRHDNLLFVGYLNTPSGLGNVLNITARFVAACLSARIA 379
Query: 382 KSKGYLKFLNAKKN-DNPDLGQDYFIDSHRHLWEVDFWKFIKC 423
S + + K+ + DLGQ F+D+ RH +EVD WK+I+
Sbjct: 380 GSDNFRRLQQLKQQPERLDLGQGRFMDTDRHRYEVDLWKYIRA 422
|
Source: Methyloversatilis universalis FAM5 Species: Methyloversatilis universalis Genus: Methyloversatilis Family: Rhodocyclaceae Order: Rhodocyclales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|117168596|gb|ABK32261.1| AmbI [Sorangium cellulosum] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/407 (44%), Positives = 255/407 (62%), Gaps = 1/407 (0%)
Query: 26 LSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85
++ + + + E + D GG W G VY S HLIS K NTQ D+PMP++YP YP+H
Sbjct: 23 FAQEGLKFTIVEADEDFGGTWALSQRSGLVYKSTHLISSKKNTQFLDFPMPEDYPHYPSH 82
Query: 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145
+ ML YLRS A + +Y+ ++F T V ++E V LSNG+ + + + V NG R
Sbjct: 83 AQMLSYLRSLATHYGLYDRALFGTRVEHVEPNGAGCRVRLSNGETRTFSAVVVANGRMRT 142
Query: 146 ARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
P Y G FSGE +HS YKS + R KRVLV+G GNSGCDIAVDA+ +E+ +HSTRR
Sbjct: 143 PLIPRYPGVFSGETMHSAAYKSHEVFRGKRVLVIGGGNSGCDIAVDAALAAEQTFHSTRR 202
Query: 206 GYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDA 265
GYHY PKFI GKPT +W++ +G+KF S+++ +++++ FK AG+D VDYGL +PDH +
Sbjct: 203 GYHYMPKFIHGKPTQEWLMDMGSKFRSQDDYWSFVQREFKAAGYDPVDYGLPRPDHAIHE 262
Query: 266 AHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDK 325
AHPI+NS +LY+IGHGDI PK D++ G V FVD T EVD I+YATGY FPF+
Sbjct: 263 AHPILNSLVLYYIGHGDIHPKPDVRRFEGRTVEFVDGTRAEVDLILYATGYEMDFPFL-A 321
Query: 326 EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKG 385
E L G +LF+ + R D++ F G+ NAA+GLG+ L G + Y+ A + +
Sbjct: 322 EDLRPSDGALELFLSMFHRKADSLVFVGYFNAASGLGNLLNCGGALVTDYLVAREKNTDA 381
Query: 386 YLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLD 432
+ + PD+G+ F++S RH E D WK +K +R +L+
Sbjct: 382 FRVLRRLIQGPEPDIGRGRFLNSPRHRVETDLWKAMKVMNFFRSVLN 428
|
Source: Sorangium cellulosum Species: Sorangium cellulosum Genus: Sorangium Family: Polyangiaceae Order: Myxococcales Class: Deltaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|240141783|ref|YP_002966291.1| putative flavin-containing monooxygenase [Methylobacterium extorquens AM1] gi|418058849|ref|ZP_12696813.1| Flavin-containing monooxygenase [Methylobacterium extorquens DSM 13060] gi|240011725|gb|ACS42950.1| Putative flavin-containing monooxygenase [Methylobacterium extorquens AM1] gi|373567590|gb|EHP93555.1| Flavin-containing monooxygenase [Methylobacterium extorquens DSM 13060] | Back alignment and taxonomy information |
|---|
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/419 (43%), Positives = 253/419 (60%), Gaps = 1/419 (0%)
Query: 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK 65
+ ++ IIG G GIG+ + L I +++ E S +GG W ++Y S HLIS K
Sbjct: 2 RQERIGIIGAGASGIGIAKALRREGIEFEMLESTSRVGGNWQPDGPASKMYRSAHLISSK 61
Query: 66 FNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 125
NTQ DYPMPD+YP YP+HS+M DYL+S DV F T V + W +
Sbjct: 62 RNTQFSDYPMPDDYPHYPHHSLMHDYLQSVVASTDVQRSIRFGTTVTSARHDGSGWRLRF 121
Query: 126 SNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSG 185
G Y + VC+G R P Y G F GE +H+++Y+S + KRVLVVG GNSG
Sbjct: 122 KEGGDAFYGTLIVCSGLLRRPIIPFYPGRFDGETIHAVEYRSSSMLEGKRVLVVGGGNSG 181
Query: 186 CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK 245
CDIAVDA H + KV+HSTRRGYHY PKFI G+PT +W++ + +FS + ++ Q F+
Sbjct: 182 CDIAVDAVHGAAKVFHSTRRGYHYMPKFIAGRPTQEWLMDIAPEFSDPDAYWEHVSQTFR 241
Query: 246 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHI 305
LAGFDG D+GL PDH + +AHPI+NSQIL+HIGHGDI P DI ++G + F D T
Sbjct: 242 LAGFDGRDFGLPPPDHGIQSAHPILNSQILFHIGHGDISPVGDIVKMSGRQIEFSDGTRE 301
Query: 306 EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGL 365
EVD II+ATGY+ PF +K + + F+ +A R D++ + G++N +GLG+
Sbjct: 302 EVDLIIWATGYDPDLPFFNKSDFDAVEDLNSAFLKVASRRYDDLLYVGYLNTPSGLGNVG 361
Query: 366 RLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP-DLGQDYFIDSHRHLWEVDFWKFIKC 423
+ G F +Y+Q + G+ KF K+ + P DLGQ+ F+ + RH EVD WKFIK
Sbjct: 362 NVLGSFTAAYLQGRAGATAGWQKFQLLKRENAPVDLGQERFMRTKRHSHEVDLWKFIKT 420
|
Source: Methylobacterium extorquens AM1 Species: Methylobacterium extorquens Genus: Methylobacterium Family: Methylobacteriaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 433 | ||||||
| UNIPROTKB|Q48I18 | 456 | PSPPH_2775 "Monooxygenase, fla | 0.884 | 0.839 | 0.336 | 1.3e-61 | |
| UNIPROTKB|Q5LVA4 | 438 | SPO0798 "Monooxygenase domain | 0.833 | 0.824 | 0.355 | 4.5e-59 | |
| TIGR_CMR|SPO_0798 | 438 | SPO_0798 "monooxygenase domain | 0.833 | 0.824 | 0.355 | 4.5e-59 | |
| UNIPROTKB|Q0BXY3 | 443 | HNE_2983 "Monooxygenase, flavi | 0.884 | 0.864 | 0.332 | 2.5e-56 | |
| UNIPROTKB|A6QLN7 | 533 | FMO5 "Dimethylaniline monooxyg | 0.870 | 0.707 | 0.295 | 9.6e-41 | |
| RGD|1595097 | 538 | LOC685351 "similar to flavin c | 0.785 | 0.631 | 0.310 | 6.8e-40 | |
| UNIPROTKB|E2QUP4 | 533 | FMO5 "Dimethylaniline monooxyg | 0.891 | 0.724 | 0.300 | 1.4e-39 | |
| RGD|1559819 | 536 | Fmo13 "flavin-containing monoo | 0.685 | 0.554 | 0.337 | 2.3e-39 | |
| MGI|MGI:1310002 | 532 | Fmo1 "flavin containing monoox | 0.736 | 0.599 | 0.330 | 9.9e-39 | |
| MGI|MGI:1310004 | 533 | Fmo5 "flavin containing monoox | 0.884 | 0.718 | 0.295 | 9.9e-39 |
| UNIPROTKB|Q48I18 PSPPH_2775 "Monooxygenase, flavin-binding family" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 132/392 (33%), Positives = 212/392 (54%)
Query: 24 RELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83
R L ++Y+ +E ++GGVW+ +Y S H IS + + DYPMP ++P YP
Sbjct: 15 RALKRQGLDYEQFERHGEVGGVWDINNPGTPMYQSAHFISSRDQSGFIDYPMPAHFPDYP 74
Query: 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGA 142
++ + +Y+RS+A FD+Y+ FNT V ++E+ +D W V L++G++++Y + G
Sbjct: 75 SNRQIFEYVRSFAVAFDLYDRIRFNTAVKDVEKEQDGRWLVTLASGERRRYRAVVCATGC 134
Query: 143 QRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHS 202
P G F G + HS+ YK+PD+ + KRV+V+GA NSG DIA DA+ H++K + S
Sbjct: 135 NWDPNMPEVKGQFEGTVRHSVTYKNPDEFKGKRVMVIGADNSGADIACDAAKHADKAFIS 194
Query: 203 TRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA--YIKQVFKLAGFDGVDYGLKKPD 260
RRGYH PK + G P ++ G K +A + + ++ D +GL +PD
Sbjct: 195 MRRGYHLIPKHLFGMPVDEF----GEKGPQLPMWLARPVFQTILRVINGDTRRFGLPRPD 250
Query: 261 HPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHF 320
H L +HP++N+Q+L+++ HGDI K D+ + G V F D T +D ++YATGY
Sbjct: 251 HKLFESHPLLNTQLLHYLQHGDIQVKPDVSHYEGQHVVFKDGTREPLDLVLYATGYKWSC 310
Query: 321 PFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380
P+ K EW+ G P L++ I R N+F G+V + + + Y++ +
Sbjct: 311 PYAAKY-FEWQGGRPRLYLSIFSREHHNLFGIGYVETNSSAYKLFDSEAHAVACYLRDQL 369
Query: 381 RKSKGYLKFLNAKKNDNPDL-GQDYFIDSHRH 411
+ F D+PDL G F+ S RH
Sbjct: 370 HQKTQASHFDQLIATDDPDLSGGIKFVKSQRH 401
|
|
| UNIPROTKB|Q5LVA4 SPO0798 "Monooxygenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 134/377 (35%), Positives = 198/377 (52%)
Query: 28 EGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87
E I +D +E+ SD+GG+W+ +Y S HLIS K T+ D+PM + YP+H
Sbjct: 26 EQGIAFDGFELHSDVGGLWDIDGPRSTMYESAHLISSKRMTEFTDFPMEEAVAEYPSHRE 85
Query: 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEV---ELSNGKKKKYDFIAVCNG 141
+ Y ++A ++ + +H F EV+ E + W V + + Y + + NG
Sbjct: 86 LKRYFHAFAARYGLRDHYRFGAEVLRCEPLGEPGAGWRVIWRDAEGEHTETYAGVMIANG 145
Query: 142 AQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH 201
P + G F GE++HS Y+ P Q KRVL+VGAGNSGCDIAVDA HH
Sbjct: 146 TLSEPNMPTFQGRFDGELIHSSAYRHPSQFDGKRVLIVGAGNSGCDIAVDAIHHGALCDL 205
Query: 202 STRRGYHYYPKFIDGKP--TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKP 259
S RRGY++ PK++ GKP T M++L + + M + K D YG KP
Sbjct: 206 SMRRGYYFVPKYVFGKPADTLGGMIKLPMWLKRRVDGM-----ILKWFVGDPQKYGFPKP 260
Query: 260 DHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRH 319
D+ L +HP++NS +LYH GHGD+ + DI +G V F D + E D I+ ATGY
Sbjct: 261 DYQLYESHPVVNSLVLYHAGHGDLRIRPDIDRFDGRRVIFADGSSEEYDMILAATGYKLF 320
Query: 320 FPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLG-DGLRLQGQFIRSYIQA 378
+PFID++ L W+ P L+++ D++F G + A+ GLG G Q + + YI
Sbjct: 321 YPFIDRDLLNWQGDAPHLYLNALHPERDDLFVLGMIEAS-GLGWQGRHEQAEMVARYITG 379
Query: 379 FIRKSKGYLKFLNAKKN 395
+R+ L A K+
Sbjct: 380 -LRRGGAAAAELKAAKS 395
|
|
| TIGR_CMR|SPO_0798 SPO_0798 "monooxygenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 134/377 (35%), Positives = 198/377 (52%)
Query: 28 EGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87
E I +D +E+ SD+GG+W+ +Y S HLIS K T+ D+PM + YP+H
Sbjct: 26 EQGIAFDGFELHSDVGGLWDIDGPRSTMYESAHLISSKRMTEFTDFPMEEAVAEYPSHRE 85
Query: 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEV---ELSNGKKKKYDFIAVCNG 141
+ Y ++A ++ + +H F EV+ E + W V + + Y + + NG
Sbjct: 86 LKRYFHAFAARYGLRDHYRFGAEVLRCEPLGEPGAGWRVIWRDAEGEHTETYAGVMIANG 145
Query: 142 AQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH 201
P + G F GE++HS Y+ P Q KRVL+VGAGNSGCDIAVDA HH
Sbjct: 146 TLSEPNMPTFQGRFDGELIHSSAYRHPSQFDGKRVLIVGAGNSGCDIAVDAIHHGALCDL 205
Query: 202 STRRGYHYYPKFIDGKP--TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKP 259
S RRGY++ PK++ GKP T M++L + + M + K D YG KP
Sbjct: 206 SMRRGYYFVPKYVFGKPADTLGGMIKLPMWLKRRVDGM-----ILKWFVGDPQKYGFPKP 260
Query: 260 DHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRH 319
D+ L +HP++NS +LYH GHGD+ + DI +G V F D + E D I+ ATGY
Sbjct: 261 DYQLYESHPVVNSLVLYHAGHGDLRIRPDIDRFDGRRVIFADGSSEEYDMILAATGYKLF 320
Query: 320 FPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLG-DGLRLQGQFIRSYIQA 378
+PFID++ L W+ P L+++ D++F G + A+ GLG G Q + + YI
Sbjct: 321 YPFIDRDLLNWQGDAPHLYLNALHPERDDLFVLGMIEAS-GLGWQGRHEQAEMVARYITG 379
Query: 379 FIRKSKGYLKFLNAKKN 395
+R+ L A K+
Sbjct: 380 -LRRGGAAAAELKAAKS 395
|
|
| UNIPROTKB|Q0BXY3 HNE_2983 "Monooxygenase, flavin-binding family" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 139/418 (33%), Positives = 217/418 (51%)
Query: 24 RELSEGNINYDLYEMESDLGGVW-----NSQASCGRVYPSLHLISPKFNTQVPDYPMPDN 78
+ L + ++ YD +E ++GG W N +SC Y SLH+ + K+ DYP+P +
Sbjct: 25 KRLKDASLPYDCFEKSDNIGGNWYYMNPNGVSSC---YQSLHIDTSKWRLAFEDYPVPGD 81
Query: 79 YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIA 137
+P +P+H+ +L Y Y F + FNT V ++ + + V LS G+ + YD +
Sbjct: 82 WPDFPHHAQLLQYFHDYVDHFGLRETITFNTSVEDVADLPNGRYRVTLSTGETRDYDAVC 141
Query: 138 VCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQ---IRNKRVLVVGAGNSGCDIAVDASH 194
V NG AR P Y G F+G +HS Y+ P + R KR+++VGAGNS DI+ + S
Sbjct: 142 VANGHHWDARTPTYPGTFTGYQVHSHHYRDPFEPFDFRGKRIMIVGAGNSAMDISSELSQ 201
Query: 195 H--SEKVYHSTRRGYHYYPKFIDGKPT-----PQWM-LQLGNKFSSKEETMAYIKQVFKL 246
+EK++ S RRG PK++DG+P P WM LG + K+ IK+ +
Sbjct: 202 RPIAEKLFISMRRGVWVMPKYMDGRPADKAVLPAWMPTSLGRSLAKKK-----IKKT--I 254
Query: 247 AGFDGVDYGLKKPDH-PLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHI 305
+ DYGL KPDH PL+ HP ++ + L +G GDILPK I +G VHF D T
Sbjct: 255 GNME--DYGLPKPDHEPLEG-HPSVSGEFLTRVGCGDILPKPGIDRFDGKTVHFTDGTSE 311
Query: 306 EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGL 365
E+D I++ATGYN FPF +++L K + L+ + + +FF G L +
Sbjct: 312 EIDAIVWATGYNTSFPFFKQDELTPKDNVFSLYKRMVKPGRETLFFLGLAQPLPTLVNFA 371
Query: 366 RLQGQFIRSYIQA-FIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIK 422
Q + + + +Q + S + + ++ LG +F DS RH +VDF +++
Sbjct: 372 EQQSKLVAAALQGRYAFPSHEEMDRVTVA-DEQAHLG--HFYDSPRHRMQVDFNLYVR 426
|
|
| UNIPROTKB|A6QLN7 FMO5 "Dimethylaniline monooxygenase [N-oxide-forming]" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 120/406 (29%), Positives = 198/406 (48%)
Query: 36 YEMESDLGGVWNSQASC--GR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDY 91
+E D+GG+W Q GR +Y S+ + + K DYP+PD+YP + ++S +L+Y
Sbjct: 32 FERSDDIGGLWRFQEEPEEGRASIYKSVIINTSKEMMCFSDYPIPDHYPNFMHNSQVLEY 91
Query: 92 LRSYAKKFDVYNHSIFNTEVINLEQYEDI-----WEVEL-SNGKKKKYDF--IAVCNGAQ 143
R YAK+FD+ + F T V ++++ D WEV S GKK+ Y F + VC G
Sbjct: 92 FRMYAKEFDLLKYIQFKTTVCSVKKQPDFPTSGQWEVVTESEGKKEVYVFDGVMVCTGHH 151
Query: 144 RVARYP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKV 199
A P ++ G F G+ HS DYK+PD KRV+++G GNSG D+AV+ SH +++V
Sbjct: 152 TYAHLPLESFPGIEKFKGQYFHSRDYKNPDSFTGKRVIIIGIGNSGGDLAVEISHRAKQV 211
Query: 200 YHSTRRGYHYYPKFID-GKPTPQWMLQLGN----KFSSKEETMAYIKQVFKLAGFDGVDY 254
+ STRRG + D G P + N K + T Y+++ F+ +
Sbjct: 212 FLSTRRGAWVLNRVGDYGYPFDTILSSRFNHLLKKIIGESATNRYLEKKINQR-FNHEMF 270
Query: 255 GLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYA 313
GLK P H + HP +N + I G + K ++K F D + + +D +I+A
Sbjct: 271 GLK-PKHRALSQHPTINDDLPNRIISGFVKVKTNVKEFTETAAIFEDGSREDDIDAVIFA 329
Query: 314 TGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDN--IFFFGFVNAAAGLGDGLRLQGQF 371
TGY+ FPF++ K + L+ + P NL+ + G + + LQG++
Sbjct: 330 TGYSFAFPFLEDSVKVVKNKV-SLYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQGRW 388
Query: 372 IRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDF 417
+ ++ + + D+ + F++S RH + D+
Sbjct: 389 ATQVFKG-LKTLPPQSEMMTEIAKVQEDMAKQ-FVESQRHTIQGDY 432
|
|
| RGD|1595097 LOC685351 "similar to flavin containing monooxygenase 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 116/373 (31%), Positives = 185/373 (49%)
Query: 26 LSEGNINYDLYEMESDLGGVWNSQ--ASCGR--VYPSLHLISPKFNTQVPDYPMPDNYPV 81
L EG + +E SD+GG+W + + G +Y SL + K T DYP+PD+YP
Sbjct: 23 LDEG-LEPTCFEKRSDIGGLWKYEEISKSGNLGIYKSLTCNTSKEMTAFSDYPIPDHYPN 81
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-----WEVELSNGKKKK---Y 133
Y ++S M++YLR YA+ F + H F T+V ++++ D W+V + G+ +K +
Sbjct: 82 YMHNSKMMEYLRMYARHFGLLKHIQFQTKVCSIKKRPDFSSSGQWDVVVETGETQKTYIF 141
Query: 134 DFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 189
D I VC+G +P ++ G F G LHS +YK P+ KRV+V+G GNSG D+A
Sbjct: 142 DGIMVCSGHYTEKHFPLQDFEGISKFQGSCLHSWEYKHPNSFSGKRVVVIGIGNSGADVA 201
Query: 190 VDASHHSEKVYHSTRRGYHYYPKFID-GKPTPQWMLQLGNKFSSKEETMAYIKQVF--KL 246
+ S +++V+ STRRG + + D G P + N+ K I + KL
Sbjct: 202 GEISRVADQVFLSTRRGAWVWSRVWDHGNPMDASLFTRYNRAVQKFCPRYLINRQMEKKL 261
Query: 247 -AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHI 305
A F+ ++GL P H + + + + HI G + K ++K F D T
Sbjct: 262 NARFNHANFGLL-PQHRILDHRTVFSDDLPSHIITGKVKIKTNVKTFTSTSAVFEDGTEE 320
Query: 306 EVDTIIYATGYNRHFPFIDKEKLEWKLGIPD----LFIHIAPRNLDN--IFFFGFVNAAA 359
+D +I+ATGY FPF+ + GI D +F ++ P L+ + F G V A
Sbjct: 321 NIDVVIFATGYKLAFPFLSDDS-----GILDSQYSMFKYVFPPELEKPTLAFIGIVQPAG 375
Query: 360 GLGDGLRLQGQFI 372
+ LQ +++
Sbjct: 376 AIIPTSELQSRWV 388
|
|
| UNIPROTKB|E2QUP4 FMO5 "Dimethylaniline monooxygenase [N-oxide-forming]" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 125/416 (30%), Positives = 201/416 (48%)
Query: 26 LSEGNINYDLYEMESDLGGVWNSQASC--GR--VYPSLHLISPKFNTQVPDYPMPDNYPV 81
L EG + +E D+GG+W Q + GR +Y S+ + + K DYP+PD+YP
Sbjct: 23 LEEG-LEPVCFERTDDIGGLWRFQENPEEGRASIYKSVIINTSKEMMCFSDYPIPDHYPN 81
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-----WEVEL-SNGKKKK--Y 133
+ ++S +L+Y R YAK+FD+ + T V ++++ D WEV S GKK+ +
Sbjct: 82 FMHNSQVLEYFRMYAKEFDLLKYIQLKTTVCSVKKQPDFSTSGQWEVVTESEGKKEVHVF 141
Query: 134 DFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 189
D + VC G A P ++ G F G+ HS DYK+P+ KRV+++G GNSG D+A
Sbjct: 142 DGVMVCTGHHTNAHLPLESFPGIEKFKGQYFHSRDYKNPEIFAGKRVIIIGIGNSGGDLA 201
Query: 190 VDASHHSEKVYHSTRRGYHYYPKFID-GKPTPQWMLQLGNKFSSKEETMAYIKQVF--KL 246
V+ H +++V+ STRRG + D G P + N F SK + I K+
Sbjct: 202 VEICHTAKQVFLSTRRGAWILNRVADYGYPFDVLLSSRFNYFLSKICGQSLINNFLEKKM 261
Query: 247 -AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHI 305
FD +GLK P H + HP +N + I G + K ++K F D +
Sbjct: 262 NQRFDHEMFGLK-PKHRALSQHPTVNDDLPNRIISGLVKVKGNVKEFTETAAIFEDGSRE 320
Query: 306 E-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDN--IFFFGFVNAAAGLG 362
+ +D +I+ATGY FPF+ K+ + L+ + P NL+ + G + +
Sbjct: 321 DNIDAVIFATGYTFAFPFL-KDSVPVVKNKISLYKKVFPPNLEKPTLAIIGLIQPLGAIM 379
Query: 363 DGLRLQGQFIRSYIQAF-IRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDF 417
LQG+++ + S+ +K K D D +++S RH + D+
Sbjct: 380 PISELQGRWVTQVFKGLKTLPSESEMKAEITKAQDKID---KRYVESQRHTIQGDY 432
|
|
| RGD|1559819 Fmo13 "flavin-containing monooxygenase 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 107/317 (33%), Positives = 166/317 (52%)
Query: 26 LSEGNINYDLYEMESDLGGVWNSQASCGR--VYPSLHLISPKFNTQVPDYPMPDNYPVYP 83
L EG + +E +D+GG+W + + R +Y SL + K T DYP+PD+YP Y
Sbjct: 23 LEEG-LEPTCFEKSNDIGGLWRYEETTERPGIYKSLTCNTSKEMTAFSDYPIPDHYPNYM 81
Query: 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-----WEVELS-NGKKKKYDF-- 135
++S M++YLR YA+ F + H F T V + + D W+V + +GK+K Y F
Sbjct: 82 HNSKMMEYLRMYARHFGLMKHIQFQTRVCRVRKRPDFSSSGQWDVVVEVDGKQKTYVFDG 141
Query: 136 IAVCNG--AQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD 191
+ VC+G ++ +++G F G+ LHS +Y+ PD KRV+V+G GNSG D+A +
Sbjct: 142 VMVCSGHSTEKCLPLQDFAGISKFQGKYLHSWEYRHPDSFVGKRVVVIGIGNSGADVAGE 201
Query: 192 ASHHSEKVYHSTRRGYHYYPKFID-GKPTPQWMLQLGNKFSSKEETMAYIKQVF--KL-A 247
SH +E+V+ STRRG + + D G P + N+ K I + KL A
Sbjct: 202 ISHVAEQVFLSTRRGAWIWNRVWDNGNPLDTTLFTRYNRTIQKFYPTFLINRWAENKLNA 261
Query: 248 GFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEV 307
F+ +YGL+ H + I + + HI G +L K ++K F D + V
Sbjct: 262 RFNHANYGLQAK-HRFLSHQSIFSDNLPNHIITGRVLVKPNVKEFTPTSAIFEDGSEEIV 320
Query: 308 DTIIYATGYNRHFPFID 324
D +++ATGY FPF+D
Sbjct: 321 DNVVFATGYTFSFPFLD 337
|
|
| MGI|MGI:1310002 Fmo1 "flavin containing monooxygenase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 113/342 (33%), Positives = 180/342 (52%)
Query: 26 LSEGNINYDLYEMESDLGGVWN--SQASCGR--VYPSLHLISPKFNTQVPDYPMPDNYPV 81
L EG + +E SDLGG+W GR +Y S+ S + + PD+P P++YP
Sbjct: 22 LEEG-LEPTCFERSSDLGGLWRFTEHVEEGRASLYKSVVSNSSREMSCYPDFPFPEDYPN 80
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--Y 133
+ +S+ L+YL+ Y+ +F++ FNT+V ++ + D WEV ++NGK+ +
Sbjct: 81 FVPNSLFLEYLKLYSTQFNLQRCIYFNTKVCSITKRPDFAVSGQWEVVTVTNGKQNSAIF 140
Query: 134 DFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 189
D + VC G P ++ G F GE HS YK PD ++KRVLVVG GNSG DIA
Sbjct: 141 DAVMVCTGFLTNPHLPLDSFPGILTFKGEYFHSRQYKHPDIFKDKRVLVVGMGNSGTDIA 200
Query: 190 VDASHHSEKVYHSTRRGYHYYPKFID-GKPTPQ-WMLQLGNKFSSKEET--MAYIKQVFK 245
V+ASH ++KV+ ST G + D G P +M + N + T ++++
Sbjct: 201 VEASHLAKKVFLSTTGGAWVISRVFDSGYPWDMIFMTRFQNMLRNLLPTPIVSWLISKKM 260
Query: 246 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHI 305
+ F+ V+YG+ P+ P++N ++ I G + K IK + N V F +
Sbjct: 261 NSWFNHVNYGVA-PEDRTQLREPVLNDELPGRIITGKVFIKPSIKEVKENSVVFNNTPKE 319
Query: 306 E-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNL 346
E +D I++ATGY FPF+D+ ++ + G L+ +I P +L
Sbjct: 320 EPIDIIVFATGYTFAFPFLDESVVKVEDGQASLYKYIFPAHL 361
|
|
| MGI|MGI:1310004 Fmo5 "flavin containing monooxygenase 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 124/419 (29%), Positives = 204/419 (48%)
Query: 26 LSEGNINYDLYEMESDLGGVWNSQASC--GR--VYPSLHLISPKFNTQVPDYPMPDNYPV 81
L EG + +E D+GG+W Q + GR +Y S+ + + K DYP+PD+YP
Sbjct: 23 LEEG-LEPVCFERSGDIGGLWRFQEAPEEGRASIYQSVVINTSKEMMCFSDYPIPDHYPN 81
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-----WEVELS-NGKKKK--Y 133
Y ++S +L+Y R YAK+FD+ + F T V ++++ D W+V GK++ +
Sbjct: 82 YMHNSQVLEYFRMYAKEFDLLKYIQFKTTVCSVKKQPDFSTSGQWQVVTECEGKQQVDVF 141
Query: 134 DFIAVCNGAQRVARYP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 189
D + VC G A P ++ G F G+ HS DYK+P + KRV+V+G GNSG D+A
Sbjct: 142 DGVLVCTGHHTDAHLPLESFPGIEKFKGKYFHSRDYKNPVEFTGKRVIVIGIGNSGGDLA 201
Query: 190 VDASHHSEKVYHSTRRGY--------HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 241
V+ SH +++V+ STRRG H YP ID + + M L + K
Sbjct: 202 VEISHTAKQVFLSTRRGAWILNRVGKHGYP--IDLLLSSRIMYYLSRICGPSLKNNYMEK 259
Query: 242 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVD 301
Q+ + FD +GLK P H + HP +N + I G + K ++K F D
Sbjct: 260 QMNQR--FDHEMFGLK-PKHRALSQHPTVNDDLPNRIIAGLVKVKGNVKEFTETAAVFED 316
Query: 302 DTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDN--IFFFGFVNAA 358
+ + +D +I+ATGY+ FPF++ K + L+ + P NL+ + G +
Sbjct: 317 GSREDGIDVVIFATGYSFAFPFLEDSVKVVKNKV-SLYKKVFPPNLEKPTLAIIGLIQPL 375
Query: 359 AGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDF 417
+ LQG++ + ++K + + ++ + Y +DS RH + D+
Sbjct: 376 GAIMPISELQGRWATQVFKG-LKKLPSQSEMMAEINKAREEMAKRY-VDSQRHTIQGDY 432
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P16549 | FMO1_PIG | 1, ., 1, 4, ., 1, 3, ., 8 | 0.3004 | 0.9006 | 0.7330 | yes | N/A |
| Q8HZ70 | FMO2_PANTR | 1, ., 1, 4, ., 1, 3, ., 8 | 0.3010 | 0.8267 | 0.6691 | yes | N/A |
| Q99518 | FMO2_HUMAN | 1, ., 1, 4, ., 1, 3, ., 8 | 0.3010 | 0.8267 | 0.7600 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.14.13 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.14.13.8 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 433 | |||
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 4e-51 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 5e-39 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 1e-21 | |
| TIGR04046 | 400 | TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido | 6e-15 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 2e-12 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 3e-05 | |
| pfam13434 | 335 | pfam13434, K_oxygenase, L-lysine 6-monooxygenase ( | 8e-05 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 1e-04 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 2e-04 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 4e-04 | |
| COG4529 | 474 | COG4529, COG4529, Uncharacterized protein conserve | 0.001 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 180 bits (457), Expect = 4e-51
Identities = 117/440 (26%), Positives = 197/440 (44%), Gaps = 34/440 (7%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW----NSQASCGRVYPSLHLISP 64
K+ +IG G G+ + E + +E D+GG+W + + +Y S+ S
Sbjct: 3 KVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSS 62
Query: 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---- 120
K + D+P P++YP + ++S L+YLR +AK FD+ + F T V ++ + D
Sbjct: 63 KEMSCFSDFPFPEDYPNFMHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSG 122
Query: 121 -WEV-ELSNGKKKK--YDFIAVCNGAQRVARYPNYS----GYFSGEILHSMDYKSPDQIR 172
WEV GK++ +D + VC G P S F G+ HS DYK P+ +
Sbjct: 123 QWEVVTEHEGKQESAVFDAVMVCTGHHTNPHLPLESFPGINKFKGQYFHSRDYKHPEGFQ 182
Query: 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPK-FIDGKPTPQWMLQ-----L 226
KRVLV+G GNSG DIAV+ S + +V+ STR G + G P + L
Sbjct: 183 GKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGSWVLSRVSDWGYPWDMLLTTRFCSFL 242
Query: 227 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK 286
N ++ +Q+ K F+ +YGL P + A PI+N ++ I G + K
Sbjct: 243 RNILPTRISNWLMERQLNKR--FNHENYGL-SPKNGKLAKEPIVNDELPNRILCGAVKVK 299
Query: 287 DDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRN 345
+K F D T E +D +I+ATGY FPF+++ ++ + L+ ++ P N
Sbjct: 300 PSVKEFTETSAIFEDGTVEEDIDVVIFATGYTFSFPFLEESLVKVETNKISLYKYVFPPN 359
Query: 346 LD--NIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF--IRKSKGYLKFLNAKKNDNPDLG 401
L+ + G + + + LQ ++ + + S ++ + KK
Sbjct: 360 LEKPTLAIIGLIQPLGSIIPTVELQARWAVRVFKGLCKLPSSSKMMEEITEKKEKKIKR- 418
Query: 402 QDYFIDSHRHLWEVDFWKFI 421
F S + D+ ++
Sbjct: 419 ---FGFSQSSTIQTDYIAYM 435
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 5e-39
Identities = 89/346 (25%), Positives = 141/346 (40%), Gaps = 39/346 (11%)
Query: 5 NKNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLIS 63
+ + IIG G G+ L + + ++ ++E D+GG W YP L L S
Sbjct: 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN-----RYPGLRLDS 60
Query: 64 PKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNT--EVINLEQYEDIW 121
PK+ P P + + + DY++ Y +K+ + FNT EV + ++ W
Sbjct: 61 PKWLLGFPFLPFRW-DEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRW 119
Query: 122 EVELSNGKKKKY--DFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVL 177
V S+G + DF+ V G P+++G F G ILHS D+ +P+ +R KRVL
Sbjct: 120 TVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVL 179
Query: 178 VVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTP-----QWMLQLG----- 227
V+GAG S DIA + + V S R H PK + G+ + L G
Sbjct: 180 VIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRR 239
Query: 228 NKFSSKEETMAY--------IKQVFKLAG----FDGVDYGLK---KPDHPLDAAHPIMNS 272
+ A K+V L F +D G++ PD+ + +
Sbjct: 240 GRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDG 299
Query: 273 QILYHIGHGDILPKDDIKNLNGNIVHFVDD-THIEVDTIIYATGYN 317
+ GD+ +I + +D E D II ATG +
Sbjct: 300 DLFEAGASGDVEVVTEIIDRFTEGGILLDSGREEEADVIITATGLD 345
|
Length = 443 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 1e-21
Identities = 87/343 (25%), Positives = 138/343 (40%), Gaps = 93/343 (27%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASC---------------GRVY 56
+IG G G+ REL ++E E +GG+W VY
Sbjct: 15 VIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVY 74
Query: 57 PSLHLISPKFNTQVPDYPM---PDNYPV----YPNHSMMLDYLRSYAKKFDVYNHSIFNT 109
SL P+ D+P D+ YP+H +L YL+ +A++F + F T
Sbjct: 75 ESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFET 134
Query: 110 EVINLEQYEDIWEVELSNG----KKKKYDFIAVCNG---AQRVARYPNYSGYFSGEILHS 162
EV+ +E + W V+ N K + +D + VCNG VA P + G+ +HS
Sbjct: 135 EVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSW-PGKQIHS 193
Query: 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR-RGYHYYPKFIDGKPTPQ 221
+Y+ PD +N+ V+V+G SG DI+ D + +++V+ ++R Y K P PQ
Sbjct: 194 HNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKL----PVPQ 249
Query: 222 WMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG 281
L + ++ +D AH G
Sbjct: 250 NNLWMHSE---------------------------------IDTAHE-----------DG 265
Query: 282 DILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFID 324
I+ K NG +V+ DTI++ TGY HFPF++
Sbjct: 266 SIVFK------NGKVVY--------ADTIVHCTGYKYHFPFLE 294
|
Length = 461 |
| >gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 6e-15
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 28/227 (12%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVP 71
IIG G G+ + L + I++ + E + + W + + S L++P + ++P
Sbjct: 5 IIGAGQAGLSVSYYLKQAGIDHVVLEKHT-VAHSWRDER-----WDSFCLVTPNWQCRLP 58
Query: 72 DYPMPDNYPVYPNHSMM-----LDYLRSYAKKFD--VYNHSIFNTEVINLEQYE-DIWEV 123
+P P M + YL YA+ F+ V TEV +L ++ + V
Sbjct: 59 GHPYDGTDP----DGFMVKDEIVAYLDGYARSFNPPVREG----TEVTSLRKHGAGGFRV 110
Query: 124 ELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI--LHSMDYKSPDQIRNKRVLVVGA 181
S G D + + G V P + ++ LHS +Y++PDQ+ + VLVVG+
Sbjct: 111 STSAGAFTA-DQVVIATGGYHVPVIPPLAERLPADVLQLHSSEYRNPDQLPDGAVLVVGS 169
Query: 182 GNSGCDIAVDASHHSEKVYHSTRRGYH-YYPKFIDGKPTPQWMLQLG 227
G SGC IA D KV+ + G +F G+ W+ +G
Sbjct: 170 GQSGCQIAEDLHLAGRKVHLAV--GSAPRCARFYRGRDVVDWLDDMG 214
|
Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 21/207 (10%)
Query: 11 CIIGGGPLGIG-LGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP-KFNT 68
++G G G+ L G+ + + + GG W + YP + L P F
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHWR------KWYPFVRLHQPSFFYG 54
Query: 69 ----------QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE 118
+ P D + + + YL A+++ + +T V +E+
Sbjct: 55 DFGMPDLNALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGL--PIRLSTRVTAVERDG 112
Query: 119 DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLV 178
+ V L++G+ + D++ GA V + P + G + E +H +D ++ K V V
Sbjct: 113 GRFVVRLTDGETVRADYVVDATGAFSVPKPPGFPGADA-EGVHLVDVLERIDLKGKTVAV 171
Query: 179 VGAGNSGCDIAVDASHHSEKVYHSTRR 205
+G G++ D A++ + V TRR
Sbjct: 172 IGGGHTAIDAALNLLDLGKDVTWITRR 198
|
Length = 202 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 39/200 (19%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT 68
+ IIGGGP G+ L+ + L E E
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNR---------------------G 39
Query: 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE-QYEDIWEVELSN 127
+P + + ++ L K+F V + TEV++++ + + ++
Sbjct: 40 CLPKKLLLEVAEGLEL-AIGLALPEEVYKEFGV--EVLLGTEVVDIDRGEKTVVLKDVET 96
Query: 128 GKKKKYD--FIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRN-----KRVLVVG 180
G++ YD IA GA+ R P G E+ D+I KRV+VVG
Sbjct: 97 GREITYDKLIIAT--GAR--PRIPGIPGV---EVATLRGVIDSDEILELLELPKRVVVVG 149
Query: 181 AGNSGCDIAVDASHHSEKVY 200
G G ++A + ++V
Sbjct: 150 GGYIGLELAAALAKLGKEVT 169
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 8e-05
Identities = 45/260 (17%), Positives = 90/260 (34%), Gaps = 54/260 (20%)
Query: 90 DYLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSN-GKKKKYDFIAVCNGAQRVA 146
DYL+ A + + + F EV +E + V + G ++ Y + G
Sbjct: 99 DYLQWAASQLE---NVRFGAEVEEVEPDDSGFLLRVHTRDTGTEQTYLARNLVLGTGTTP 155
Query: 147 RYP-NYSGYFSGEILHSMDYKS--PDQIRNKRVLVVGAGNSGCDIAVDA---SHHSEKVY 200
P + HS +Y P + KR+ VVG G S +I +D + +
Sbjct: 156 YIPECAKPLPGERVFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDLLRRQPGYQLTW 215
Query: 201 HSTRRGY-----------HYYPKFIDG-----KPTPQWMLQLGNKFSSKEETMAYIKQVF 244
+ R + ++ P+++D + +L+ + K I++++
Sbjct: 216 VTRRPNFFPLDDSPFTNEYFSPEYVDYFYALPEEKRDRLLREQKLTNYKGIDPDLIEEIY 275
Query: 245 ------KLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVH 298
K+ G L P+ + AA + L ++N
Sbjct: 276 RRLYQQKVLG--DPRVRL-LPNREVQAAEATGDGYQL------------TLRNGEQG--- 317
Query: 299 FVDDTHIEVDTIIYATGYNR 318
++ ++ D ++ ATGY
Sbjct: 318 --EEETLDADAVVLATGYRY 335
|
This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 39/204 (19%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPS-LHLISPKFN 67
+ IIG GP G+ E + ++Y + E G + NS YP+ + S
Sbjct: 1 DVIIIGAGPCGLACAIEAQKAGLSYLIIEK----GNLVNSI----YRYPTNMTFFSTSER 52
Query: 68 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN 127
++ P P P + L+Y R A++F +N+ YE++ +V
Sbjct: 53 LEIGGIPFISENP-KPTRNEALEYYRRVAERFK-----------LNIRLYEEVLKV---- 96
Query: 128 GKKKKYDFIAVCNGAQRVARY----------PNYSGYFSGEILH--SMDYKSPDQIRNKR 175
KK F A+ PN GE L S YK ++
Sbjct: 97 -KKTDGGFEVTTEKGTYQAKNVIVATGYYDIPNLLN-VPGEDLPKVSHYYKEAHPYFGQK 154
Query: 176 VLVVGAGNSGCDIAVDASHHSEKV 199
V+VVG NS D A++ +V
Sbjct: 155 VVVVGGSNSAVDAALELYRKGAEV 178
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 38/201 (18%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVP 71
IIGGGP G+ + + L + GG T V
Sbjct: 8 IIGGGPAGLTAAIYAARAGLKVVLILEGGEPGG------------------QLTKTTDVE 49
Query: 72 DYPMPDNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG 128
NYP +P + +++ ++ A+KF V I EV +E ++V+ G
Sbjct: 50 ------NYPGFPGGILGPELMEQMKEQAEKFGV---EIVEDEVEKVELEGGPFKVKTDKG 100
Query: 129 K-KKKYDFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSG 185
+ K IA GA AR G F G+ + + K V+V+G G+S
Sbjct: 101 TYEAKAVIIAT--GA--GARKLGVPGEEEFEGKGVSYCATCDGF-FKGKDVVVIGGGDSA 155
Query: 186 CDIAVDASHHSEKVYHSTRRG 206
+ A+ S ++KV RR
Sbjct: 156 VEEALYLSKIAKKVTLVHRRD 176
|
Length = 305 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 34/117 (29%)
Query: 107 FNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA--QRVARYP--NYSGYFSG-EILH 161
F +++LE EL KKYD + + G R P + G +S E L
Sbjct: 105 FVERIVSLE--------EL----VKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLF 152
Query: 162 S--------MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS-----EKVYHSTRR 205
+ ++ + K+V+VVGAG + AVDA+ + EKVY + RR
Sbjct: 153 RIRAAKLGYLPWEKVPPVEGKKVVVVGAGLT----AVDAALEAVLLGAEKVYLAYRR 205
|
Length = 352 |
| >gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 46/240 (19%), Positives = 77/240 (32%), Gaps = 51/240 (21%)
Query: 9 KLCIIGGGPLGIGLGREL-----SEGNINYDLYEMESDLG-GVWNSQASCGRVYPSLHLI 62
K+ IIGGG GI + L G I ++E + G G+ S HL+
Sbjct: 3 KVAIIGGGFSGIYMAAHLLKSPRPSGLI--SIFEPRPNFGQGIAYSTEE------PEHLL 54
Query: 63 ---SPKFNTQVPDYP-------------------MPDNYPVYPNHSMMLDYLRSYAKKF- 99
+ + + PD P + + YP + +YLR
Sbjct: 55 NVPAARMSAFAPDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALL 114
Query: 100 -----DVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFI--AVCNGAQRVARYPN 150
E ++ Q + + V ++G + D I A + A
Sbjct: 115 ARGRQTRVRTI--REEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADPAAR 172
Query: 151 YSGYFSGEILHSMDYKSPDQIR-NKRVLVVGAGNSGCDI--AVDASHHSEKVYHSTRRGY 207
I + D + + RVL+VG+G + D + H + +RRG
Sbjct: 173 DLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGL 232
|
Length = 474 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 433 | |||
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 100.0 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 100.0 | |
| KOG1399|consensus | 448 | 100.0 | ||
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.98 | |
| PRK06370 | 463 | mercuric reductase; Validated | 99.98 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.98 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 99.98 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.98 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.97 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 99.97 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.97 | |
| KOG0405|consensus | 478 | 99.97 | ||
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.97 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.97 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 99.97 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.97 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 99.97 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.97 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.97 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.97 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.97 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.97 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.97 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.97 | |
| PLN02546 | 558 | glutathione reductase | 99.97 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.97 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.97 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.97 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.97 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.97 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.97 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.97 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 99.97 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.96 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.96 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.96 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.96 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.96 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.95 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.95 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.95 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.95 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.95 | |
| KOG0404|consensus | 322 | 99.95 | ||
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.94 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.94 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.94 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.94 | |
| KOG1335|consensus | 506 | 99.93 | ||
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.93 | |
| KOG2495|consensus | 491 | 99.93 | ||
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.92 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.92 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.92 | |
| KOG1336|consensus | 478 | 99.92 | ||
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.92 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.91 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.91 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.91 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.91 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.89 | |
| KOG4716|consensus | 503 | 99.88 | ||
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.88 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.77 | |
| KOG0399|consensus | 2142 | 99.76 | ||
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.76 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.75 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.74 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.74 | |
| KOG1800|consensus | 468 | 99.73 | ||
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.72 | |
| KOG1346|consensus | 659 | 99.64 | ||
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.54 | |
| KOG2755|consensus | 334 | 99.53 | ||
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.51 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.48 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 99.47 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 99.42 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 99.37 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 99.33 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 99.33 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.31 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 99.31 | |
| KOG3851|consensus | 446 | 99.31 | ||
| PRK06834 | 488 | hypothetical protein; Provisional | 99.31 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 99.3 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 99.29 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 99.29 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 99.29 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 99.29 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 99.28 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 99.27 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 99.27 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 99.27 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 99.26 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 99.26 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 99.26 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 99.25 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.25 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.25 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 99.24 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.24 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 99.24 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 99.24 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.24 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 99.22 | |
| PRK05868 | 372 | hypothetical protein; Validated | 99.22 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.22 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 99.2 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 99.2 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 99.2 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 99.2 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 99.18 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 99.18 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 99.18 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.17 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 99.17 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 99.17 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 99.16 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.16 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 99.16 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 99.15 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 99.15 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 99.13 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 99.13 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 99.13 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 99.12 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 99.11 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 99.11 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 99.11 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 99.09 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 99.07 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 99.06 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 99.06 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.06 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 99.05 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 99.03 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.02 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 99.0 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.99 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.99 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.97 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.95 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.95 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.95 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.94 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.94 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.93 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.91 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.9 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.89 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.88 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.88 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.86 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.84 | |
| KOG2614|consensus | 420 | 98.82 | ||
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.82 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.82 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 98.81 | |
| KOG2820|consensus | 399 | 98.8 | ||
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.79 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.79 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.79 | |
| PLN02985 | 514 | squalene monooxygenase | 98.78 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.78 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.77 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.76 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.76 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.75 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.74 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.74 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.73 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.73 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.73 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.72 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.72 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.71 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.71 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.71 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.7 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 98.7 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.7 | |
| KOG0685|consensus | 498 | 98.69 | ||
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.68 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.68 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.68 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.68 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 98.67 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.65 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.65 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.65 | |
| PLN02507 | 499 | glutathione reductase | 98.64 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.64 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.64 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.63 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.63 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.63 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.61 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.61 | |
| KOG2415|consensus | 621 | 98.6 | ||
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.59 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.59 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.59 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.58 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.58 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.58 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.57 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.57 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.57 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.56 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.55 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.55 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.55 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.54 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.54 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.54 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.54 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.53 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.53 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.52 | |
| KOG0029|consensus | 501 | 98.52 | ||
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.52 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 98.52 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 98.52 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.51 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 98.5 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.5 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.49 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.49 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.49 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.48 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.48 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 98.48 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.47 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.47 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.46 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 98.46 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.46 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.45 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 98.45 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.44 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.44 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.44 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 98.43 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.43 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.42 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.41 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.41 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.4 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 98.4 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 98.39 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.39 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.38 | |
| KOG1335|consensus | 506 | 98.38 | ||
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.36 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.35 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.35 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.33 | |
| PLN02546 | 558 | glutathione reductase | 98.33 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 98.31 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 98.3 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.3 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.28 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 98.27 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 98.26 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.25 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.25 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.24 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.24 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.23 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.22 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 98.22 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.2 | |
| PLN02268 | 435 | probable polyamine oxidase | 98.2 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.2 | |
| PLN02568 | 539 | polyamine oxidase | 98.2 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.17 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 98.17 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.16 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 98.15 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.12 | |
| PLN02676 | 487 | polyamine oxidase | 98.12 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 98.12 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.1 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 98.1 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 98.07 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.06 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.05 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.05 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 98.04 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 98.03 | |
| KOG2404|consensus | 477 | 98.02 | ||
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 98.0 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 97.99 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.99 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.95 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.94 | |
| KOG1298|consensus | 509 | 97.93 | ||
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.93 | |
| KOG1336|consensus | 478 | 97.88 | ||
| PLN02487 | 569 | zeta-carotene desaturase | 97.82 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.82 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.81 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.8 | |
| KOG2844|consensus | 856 | 97.79 | ||
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.77 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.73 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 97.73 | |
| PLN02612 | 567 | phytoene desaturase | 97.72 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 97.71 | |
| KOG2853|consensus | 509 | 97.69 | ||
| PLN03000 | 881 | amine oxidase | 97.68 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.68 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 97.68 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.65 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.65 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.64 | |
| KOG2311|consensus | 679 | 97.64 | ||
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.63 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 97.63 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 97.6 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.6 | |
| PLN02976 | 1713 | amine oxidase | 97.58 | |
| KOG1276|consensus | 491 | 97.54 | ||
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.54 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 97.54 | |
| KOG2852|consensus | 380 | 97.52 | ||
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.47 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.45 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 97.45 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 97.44 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 97.44 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.42 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.39 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 97.38 | |
| KOG2495|consensus | 491 | 97.36 | ||
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.36 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 97.35 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.34 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 97.34 | |
| KOG0405|consensus | 478 | 97.33 | ||
| PRK07236 | 386 | hypothetical protein; Provisional | 97.32 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.31 | |
| KOG2665|consensus | 453 | 97.31 | ||
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.28 | |
| KOG3855|consensus | 481 | 97.26 | ||
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.25 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.24 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.22 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.19 | |
| KOG3923|consensus | 342 | 97.18 | ||
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.14 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.11 | |
| KOG1346|consensus | 659 | 97.11 | ||
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 97.1 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.1 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.08 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.08 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.06 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.06 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 96.98 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 96.95 | |
| KOG4254|consensus | 561 | 96.89 | ||
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.89 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 96.83 | |
| PLN02463 | 447 | lycopene beta cyclase | 96.78 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.77 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 96.76 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 96.71 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.71 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.65 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 96.65 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 96.6 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 96.6 | |
| KOG1399|consensus | 448 | 96.58 | ||
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.58 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 96.53 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.53 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 96.5 | |
| KOG2755|consensus | 334 | 96.49 | ||
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 96.43 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 96.35 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.32 | |
| PLN02785 | 587 | Protein HOTHEAD | 96.29 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 96.27 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 96.21 | |
| KOG0042|consensus | 680 | 96.18 | ||
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 96.14 | |
| KOG2960|consensus | 328 | 96.13 | ||
| TIGR03197 | 381 | MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri | 96.11 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 96.1 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 96.1 | |
| KOG3851|consensus | 446 | 96.09 | ||
| PRK05868 | 372 | hypothetical protein; Validated | 96.04 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.89 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 95.88 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 95.81 | |
| KOG2614|consensus | 420 | 95.68 | ||
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 95.66 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 95.65 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 95.63 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.63 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 95.61 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.56 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.52 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 95.49 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.47 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 95.45 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.42 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.32 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 95.3 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.26 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 95.24 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.23 | |
| KOG2311|consensus | 679 | 95.22 | ||
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.21 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.17 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 95.16 | |
| KOG0399|consensus | 2142 | 95.16 | ||
| PLN02697 | 529 | lycopene epsilon cyclase | 95.15 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.11 | |
| TIGR02352 | 337 | thiamin_ThiO glycine oxidase ThiO. This family con | 95.08 | |
| KOG1238|consensus | 623 | 95.06 | ||
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 95.05 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 94.97 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.95 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 94.92 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.82 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 94.8 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.8 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 94.64 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.63 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 94.61 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 94.59 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.57 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 94.57 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.56 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 94.55 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.52 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 94.49 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.36 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 94.36 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 94.25 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.23 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.2 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 94.18 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.16 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.15 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.15 | |
| KOG4716|consensus | 503 | 94.12 | ||
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 94.08 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.02 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.97 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.94 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.91 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 93.87 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.84 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.77 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 93.71 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 93.68 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 93.6 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 93.56 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 93.42 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 93.38 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.36 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 93.36 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 93.33 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 93.33 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.31 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 93.22 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 93.02 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 92.98 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 92.85 | |
| KOG4405|consensus | 547 | 92.82 | ||
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 92.77 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.69 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.67 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.63 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 92.62 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 92.59 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 92.58 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.55 |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-75 Score=568.18 Aligned_cols=414 Identities=33% Similarity=0.570 Sum_probs=274.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC----CCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS----CGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
++|+|||||++||++|+.|.+.|++++|||+++.+||+|.+... .+++|+++..++++.++.|+|+|+|++++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999999999999999999999999987542 45789999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-----CeEEEEEccCc---EEEeCEEEEccCCCCCCCCCC--CCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-----DIWEVELSNGK---KKKYDFIAVCNGAQRVARYPN--YSG 153 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-----~~~~v~~~~g~---~~~~d~vIvAtG~~s~p~~p~--i~g 153 (433)
++.++.+|++.|++++++..+|+|+++|++|++.+ ++|.|+++++. +..||+||+|||.++.|++|. ++|
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 99999999999999999999999999999999862 58999987532 357999999999999999995 999
Q ss_pred --CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccC-CCCChhHHhHh-----
Q psy2398 154 --YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI-DGKPTPQWMLQ----- 225 (433)
Q Consensus 154 --~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~-~~~~~~~~~~~----- 225 (433)
.|.|.++||.+|++++.++||+|+|||+|+||+|+|.+|+..+++|+++.|++.|++||.. .|.|.|.....
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~ 241 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSF 241 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------------
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999986 58888865432
Q ss_pred ----hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecC
Q psy2398 226 ----LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVD 301 (433)
Q Consensus 226 ----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~d 301 (433)
+|..+.+ ++.+..++. ..+...+++ .|.+.....++++++++.+.+.+|+|.+++.|+++++++|+|+|
T Consensus 242 l~~~lp~~~~~-----~~~~~~l~~-~~~~~~~gl-~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~D 314 (531)
T PF00743_consen 242 LQKNLPESLSN-----WLLEKKLNK-RFDHENYGL-KPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFED 314 (531)
T ss_dssp ----------------------------------------------------------------EE-EEEE-SSEEEETT
T ss_pred ccccccccccc-----ccccccccc-ccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 3333333 333332211 124456666 67777788889999999999999999999999999999999999
Q ss_pred Ccee-eccEEEEccCCCCCCCCCCcccccccCCccccccccccCC--CCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 302 DTHI-EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRN--LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 302 G~~~-~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
|+++ ++|.||+||||+.++|||+.+.+...++.+.||+++++++ .|+|+|||.+.+.++.++++|+||||+|+.++|
T Consensus 315 Gs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG 394 (531)
T PF00743_consen 315 GSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSG 394 (531)
T ss_dssp SEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9985 6999999999999999999887776677789999999885 589999999988778899999999999999999
Q ss_pred hhcCCCcchhHHHHhhcCCC--ccCCCccccCCCceeeeeHHHHHHHHHHhhcccc
Q psy2398 379 FIRKSKGYLKFLNAKKNDNP--DLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLD 432 (433)
Q Consensus 379 ~~~lp~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 432 (433)
+.+||+. ++|.+++++ +....+|...++|..++||..|+|+||++|||+-
T Consensus 395 ~~~LPs~----~~M~~~i~~~~~~~~~~~~~~~~~~~~~d~~~y~deLA~~iG~~P 446 (531)
T PF00743_consen 395 RVKLPSK----EEMMEEIEEEQEWRAKRFGFSPRHTIQVDYIDYMDELAREIGCKP 446 (531)
T ss_dssp SS----H----HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHTTS-------
T ss_pred ccccccc----ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999998 999998654 2233356666778888999999999999999963
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-59 Score=450.73 Aligned_cols=359 Identities=23% Similarity=0.398 Sum_probs=294.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC---------------CCccccceEeecCCCcccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS---------------CGRVYPSLHLISPKFNTQV 70 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 70 (433)
..++|+|||||++||+||++|++.|++|+|||+++.+||+|.+... ++++|.+++.+.++.++.|
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 3589999999999999999999999999999999999999988532 3678999999999999999
Q ss_pred CCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--c--EEEeCEEEEc
Q psy2398 71 PDYPMPDN-------YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--K--KKKYDFIAVC 139 (433)
Q Consensus 71 ~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~--~~~~d~vIvA 139 (433)
+++|++.. .+.|+++.++.+|++++++++++..+|+|+++|+.|++.++.|.|++.++ . +..||+||+|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence 99998653 35689999999999999999999888999999999999888999998643 2 3579999999
Q ss_pred cCCCCCCCCCCCCC--CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCC
Q psy2398 140 NGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGK 217 (433)
Q Consensus 140 tG~~s~p~~p~i~g--~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~ 217 (433)
||+++.|++|+++| .|.|..+|++.++.++.+++|+|+|||+|.||+|+|.+|+..+++|++++|++...
T Consensus 169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~-------- 240 (461)
T PLN02172 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD-------- 240 (461)
T ss_pred ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc--------
Confidence 99999999999999 79999999999999999999999999999999999999999999999999875210
Q ss_pred ChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee-CCe
Q psy2398 218 PTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN-GNI 296 (433)
Q Consensus 218 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~-~~~ 296 (433)
.+.. ++.+. .++.....|..+. +..
T Consensus 241 -----------~~~~-----------------------~~~~~--------------------~~v~~~~~I~~~~~~g~ 266 (461)
T PLN02172 241 -----------TYEK-----------------------LPVPQ--------------------NNLWMHSEIDTAHEDGS 266 (461)
T ss_pred -----------cccc-----------------------CcCCC--------------------CceEECCcccceecCCe
Confidence 0000 00000 1233334444443 456
Q ss_pred EEecCCceeeccEEEEccCCCCCCCCCCccc-ccccCCcc-ccccccccCCC-CcEEEEccccccCChhhHHHHHHHHHH
Q psy2398 297 VHFVDDTHIEVDTIIYATGYNRHFPFIDKEK-LEWKLGIP-DLFIHIAPRNL-DNIFFFGFVNAAAGLGDGLRLQGQFIR 373 (433)
Q Consensus 297 v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~-~~~~~~~~-~~~~~~~~~~~-p~i~~iG~~~~~~~~~~~a~~qa~~~a 373 (433)
|+|+||+++++|.||+||||++++|||+... +..+++.+ +||++++++.. |+|+|||.+. ....++++|+||+|+|
T Consensus 267 V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~-~~~~f~~~E~Qa~~~a 345 (461)
T PLN02172 267 IVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPA-MGIQFVMFEIQSKWVA 345 (461)
T ss_pred EEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccc-cccCchhHHHHHHHHH
Confidence 9999999999999999999999999998533 44455555 79999999975 9999999874 4577899999999999
Q ss_pred HHHhhhhcCCCcchhHHHHhhcCCCccC-CCccccCCC--ceeeeeHHHHHHHHHHhhccc
Q psy2398 374 SYIQAFIRKSKGYLKFLNAKKNDNPDLG-QDYFIDSHR--HLWEVDFWKFIKCARMYRDML 431 (433)
Q Consensus 374 ~~i~g~~~lp~~~~~~~~m~~~~~~~~~-~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~ 431 (433)
++|+|+.+||+. ++|+++++.... +..+...++ |...-.++.|+|+||+++|+.
T Consensus 346 ~v~sG~~~LPs~----~~m~~~~~~~~~~~~~~g~~~r~~h~~~~~~~~y~~~la~~~g~~ 402 (461)
T PLN02172 346 AVLSGRVTLPSE----DKMMEDINAWYASLEALGIPKRYTHKLGKIQSEYLNWIAEECGCP 402 (461)
T ss_pred HHHcCCCCCcCH----HHHHHHHHHHHHHHHhcCCCCceeEEcCccHHHHHHHHHHHhCCC
Confidence 999999999998 999988643111 111222233 433335789999999999986
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=380.65 Aligned_cols=356 Identities=28% Similarity=0.476 Sum_probs=292.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC----CCccccceEeecCCCcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS----CGRVYPSLHLISPKFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
..++|+|||||+|||++|++|.+.|++++||||.+++||+|.+... ++++|+++.++.++.++.|+++|+++..+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 3579999999999999999999999999999999999999999865 458899999999999999999999999665
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEccC----cEEEeCEEEEccCCCCCCCCCCCCC--
Q psy2398 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNG----KKKKYDFIAVCNGAQRVARYPNYSG-- 153 (433)
Q Consensus 82 -~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g----~~~~~d~vIvAtG~~s~p~~p~i~g-- 153 (433)
++++.++.+||++||+++++..+++|+++|..++... +.|.|.+.+. ...-||.|++|||++..|++|.++|
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 4888999999999999999999999999999999887 7999998764 3577999999999996799999988
Q ss_pred --CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC-ceeecccCCCCChhHHhHhhchhh
Q psy2398 154 --YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG-YHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 154 --~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~-~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
.|.|.++||++|+.++.|++|+|+|||.|+||+|++.+++..+++|+++++.+ ....++ ..+
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~---------------~~~ 229 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPP---------------EIL 229 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccc---------------cee
Confidence 89999999999999999999999999999999999999999999999987610 111110 000
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEE-ecCCceeeccE
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVH-FVDDTHIEVDT 309 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~-~~dG~~~~~D~ 309 (433)
.. ++.....|+++++.+.. +++|....+|.
T Consensus 230 ------------------------------------------------~~-~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ 260 (448)
T KOG1399|consen 230 ------------------------------------------------GE-NLWQVPSIKSFTEDGSVFEKGGPVERVDR 260 (448)
T ss_pred ------------------------------------------------ec-ceEEccccccccCcceEEEcCceeEEeee
Confidence 11 33333348888888755 55666788999
Q ss_pred EEEccCCCCCCCCCCcccc--cccCCccccccccccCCC-CcEEEEccccccCChhhHHHHHHHHHHHHHhhhhcCCCcc
Q psy2398 310 IIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNL-DNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGY 386 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~-p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~ 386 (433)
||+||||...+|||+.... ..+....++|+.++++.. |++.++|...-. ..+++.|.|++|+++.+.|+.++|+.
T Consensus 261 ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~-~~f~~~e~Q~r~~~~v~~G~~~lps~- 338 (448)
T KOG1399|consen 261 IIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQ-IPFPMFELQARWVAAVLEGRLKLPSK- 338 (448)
T ss_pred EEEeeeeEeecceeccCCceeeccCcccchheeccchhhCccccccccCeee-EeecceehhhhhhHhhhcCCCcCCCH-
Confidence 9999999999999997653 224445789999888764 555676654322 56789999999999999999999998
Q ss_pred hhHHHHhhcCCCcc--CCCccccCCCceeeee---HHHHHHHHHHhhcc
Q psy2398 387 LKFLNAKKNDNPDL--GQDYFIDSHRHLWEVD---FWKFIKCARMYRDM 430 (433)
Q Consensus 387 ~~~~~m~~~~~~~~--~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~ 430 (433)
++|..+.+..+ .+..+..+.+++.+.+ ...|...++...|+
T Consensus 339 ---~~m~~d~~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~~~~~~g~ 384 (448)
T KOG1399|consen 339 ---DQMLEDGQEKYEKLDAVGLATGRHTHVPDYDELAEYINWFADLCGF 384 (448)
T ss_pred ---HHhhhhhhhhhhhhhhhcccccccccccchHHHHHHhhhhhhhcCC
Confidence 88888865533 3335666677766654 35687777777665
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=324.76 Aligned_cols=374 Identities=24% Similarity=0.350 Sum_probs=283.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..++||+|||||++||++|.+|++.|.+ ++||||++.+||+|.++ +|+++++++++....|+.+|++ +...++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~-----ry~~l~~~~p~~~~~~~~~p~~-~~~~~~ 79 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN-----RYPGLRLDSPKWLLGFPFLPFR-WDEAFA 79 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc-----cCCceEECCchheeccCCCccC-CcccCC
Confidence 4568999999999999999999999998 99999999999999997 7999999999999999999987 455677
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEccCcEE--EeCEEEEccCCCCCCCCCCCCC--CCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSNGKKK--KYDFIAVCNGAQRVARYPNYSG--YFSG 157 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~--~~d~vIvAtG~~s~p~~p~i~g--~~~g 157 (433)
....+.+|+.++++++++..++.+++.|+.++++ ++.|+|+++++... .||+||+|||.++.|++|+|+| .|.|
T Consensus 80 ~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g 159 (443)
T COG2072 80 PFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKG 159 (443)
T ss_pred CcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCc
Confidence 7777999999999999999999999999998887 56999999987654 5999999999999999999999 9999
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh---hchhhcCch
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ---LGNKFSSKE 234 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~---~p~~~~~~~ 234 (433)
.++||.++++..+++||+|+|||+|+||+|+|.+|++.+++||++.|++.+++|....+.+...+... +|.......
T Consensus 160 ~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
T COG2072 160 RILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRR 239 (443)
T ss_pred eEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCccceehhh
Confidence 99999999999999999999999999999999999999999999999999999988766554432221 222111100
Q ss_pred -------------------HHHHHHHHHHHHhcCCCCcC---CCCCCCCCCCCCCCccChhhhhcccCCCeeecC-Ccee
Q psy2398 235 -------------------ETMAYIKQVFKLAGFDGVDY---GLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKN 291 (433)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~v~~ 291 (433)
............+....... ....|.....+.+...+..+......+.+.+.+ .+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~~ 319 (443)
T COG2072 240 GRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEVVTEIIDR 319 (443)
T ss_pred hhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhcccceeeccccc
Confidence 00000000000111111111 122344445555566677777788888887654 4555
Q ss_pred eeCCeEEecCCceeeccEEEEccCCCC-CCCCCCcccc--cccCCccccccccccCCCCcEEEEccccccCC---hhhHH
Q psy2398 292 LNGNIVHFVDDTHIEVDTIIYATGYNR-HFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG---LGDGL 365 (433)
Q Consensus 292 ~~~~~v~~~dG~~~~~D~vi~atG~~~-~~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~---~~~~a 365 (433)
+....+..++|+.++.|.++.+||+.. .+..++.... .+.......|....-.+.||++.++....... ....+
T Consensus 320 ~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~~~~~~~~~ 399 (443)
T COG2072 320 FTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKASGGLKAALRA 399 (443)
T ss_pred cCCcceecCCCccccceEEEecCCCchhheeeeccccccccccccccceeccccccCCCceEEecCccCCcccchhHHhh
Confidence 566677777777799999999999998 4444442221 22334556777777888999999998875432 23346
Q ss_pred HHHHHHHHHHHhhhhcCCC
Q psy2398 366 RLQGQFIRSYIQAFIRKSK 384 (433)
Q Consensus 366 ~~qa~~~a~~i~g~~~lp~ 384 (433)
+.+.++++.++.-......
T Consensus 400 ~~~~~~~~~~~~~~~~~~~ 418 (443)
T COG2072 400 ELRITLLADAIAHGRTLGL 418 (443)
T ss_pred hhhhhHHHHHHHhcccccc
Confidence 6777777777655544444
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=265.04 Aligned_cols=285 Identities=20% Similarity=0.239 Sum_probs=206.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
+||+|||||++|+++|..|++.|++|++||+.+ .||.|.... .+..++.+ +......+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~---------------~~~~~~~~------~~~~~~~~ 58 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT---------------EVENYPGF------PEGISGPE 58 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc---------------cccccCCC------CCCCChHH
Confidence 589999999999999999999999999999876 777665420 01111111 11234568
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDY 165 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~~~ 165 (433)
+..++..+++++++ ++++ ++|+.++++++.|.+++.++.++.||+||+|||. .|+.|.+|| .+.+..++....
T Consensus 59 ~~~~l~~~~~~~gv--~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~--~~~~~~i~g~~~~~~~~~~~~~~ 133 (300)
T TIGR01292 59 LMEKMKEQAVKFGA--EIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA--SARKLGIPGEDEFLGRGVSYCAT 133 (300)
T ss_pred HHHHHHHHHHHcCC--eEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC--CcccCCCCChhhcCCccEEEeee
Confidence 88999999999987 4666 8999999888889999888778999999999998 778888888 455555554444
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHH
Q psy2398 166 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK 245 (433)
Q Consensus 166 ~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 245 (433)
.....+++++|+|||+|.+|+|+|..|++.+++|+++.|++.+... . .+.+.+.
T Consensus 134 ~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~--------------------~-----~~~~~l~- 187 (300)
T TIGR01292 134 CDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAE--------------------K-----ILLDRLR- 187 (300)
T ss_pred cChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcC--------------------H-----HHHHHHH-
Confidence 4445567899999999999999999999999999999987642100 0 1111111
Q ss_pred HhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEec---CC--ceeeccEEEEccCC
Q psy2398 246 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFV---DD--THIEVDTIIYATGY 316 (433)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~---dG--~~~~~D~vi~atG~ 316 (433)
.. .++ ++.....+.++.+. .+.+. +| .++++|.||+|||+
T Consensus 188 ---~~---~gv-------------------------~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 188 ---KN---PNI-------------------------EFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred ---hC---CCe-------------------------EEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 00 011 12223344454432 23332 23 46899999999999
Q ss_pred CCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccc-cCChhhHHHHHHHHHHHHHhh
Q psy2398 317 NRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 317 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~-~~~~~~~a~~qa~~~a~~i~g 378 (433)
+|+.++++.. +.. ..+++.+++. +.+++||||++||++. ....+..|..||+.+|.++..
T Consensus 237 ~~~~~~l~~~-~~~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 237 EPNTELLKGL-LELDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCChHHHHHh-heecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence 9998888755 433 3456666655 5789999999999987 356677899999999988864
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=257.93 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=203.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..+.+||+||||||+||+||..|+++|+++++||+. ..||.+..... ...++. .+...
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~---------------~~~~~~------~~~~~ 60 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE---------------VENWPG------DPNDL 60 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce---------------ECCCCC------CCCCC
Confidence 456799999999999999999999999999999964 67877654310 011111 11234
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceec
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILH 161 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~ 161 (433)
...++.+++.+.++.++. .+.++ +|+.|+..++.|+++.+++ .+.||+||+|||+ .|+.|++|| .|.+..+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~--~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~--~~~~~~i~g~~~~~~~~v~ 134 (321)
T PRK10262 61 TGPLLMERMHEHATKFET--EIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGA--SARYLGLPSEEAFKGRGVS 134 (321)
T ss_pred CHHHHHHHHHHHHHHCCC--EEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCC--CCCCCCCCCHHHcCCCcEE
Confidence 567788999999988876 35554 6778887778888876544 6899999999999 788899999 56677777
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHH
Q psy2398 162 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 241 (433)
Q Consensus 162 ~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 241 (433)
.+...+.....+++|+|||+|.+|+|+|..|++.+++|+++.|++.+. . . . .+.+
T Consensus 135 ~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-~------~---------~---------~~~~ 189 (321)
T PRK10262 135 ACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-A------E---------K---------ILIK 189 (321)
T ss_pred EeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-C------C---------H---------HHHH
Confidence 777666666789999999999999999999999999999999986421 0 0 0 1111
Q ss_pred HHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeCC-----eEEecCC------ceeecc
Q psy2398 242 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN-----IVHFVDD------THIEVD 308 (433)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~~-----~v~~~dG------~~~~~D 308 (433)
.+ .+.+....|. ....+.++.+. .|.+.++ +++++|
T Consensus 190 ~~-------------------------------~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D 238 (321)
T PRK10262 190 RL-------------------------------MDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVA 238 (321)
T ss_pred HH-------------------------------HhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECC
Confidence 11 1111222333 34456666543 3555442 368999
Q ss_pred EEEEccCCCCCCCCCCcccccccCCccccccc----cccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhh
Q psy2398 309 TIIYATGYNRHFPFIDKEKLEWKLGIPDLFIH----IAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 309 ~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g 378 (433)
.||+++|++|+..+++. .+..+.+++.+..+ .+.|+.|+||++|||...+ .....|..++..+|..+..
T Consensus 239 ~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 239 GLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAER 312 (321)
T ss_pred EEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHH
Confidence 99999999999887763 34444455555542 3578999999999998542 2333455555555555443
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=247.99 Aligned_cols=278 Identities=21% Similarity=0.231 Sum_probs=203.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC--
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY-- 82 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 82 (433)
+++||+||||||+||+||.++.+.+++ ++|+|+ ...||...... . -+++|.+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~---------------~---------venypg~~~ 56 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTT---------------D---------VENYPGFPG 56 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccce---------------e---------ecCCCCCcc
Confidence 458999999999999999999999999 555554 55665433320 1 1223333
Q ss_pred -CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCce
Q psy2398 83 -PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 159 (433)
Q Consensus 83 -~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~ 159 (433)
....++.+-+++.+..++.. +.. ..|..++..++.|.|+++++. +++++||+|||. .++.|.++| +|.|+.
T Consensus 57 ~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~--~~~~~~~~~e~e~~g~g 130 (305)
T COG0492 57 GILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGA--GARKLGVPGEEEFEGKG 130 (305)
T ss_pred CCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCC--cccCCCCCcchhhcCCc
Confidence 34688888899999988873 433 678888775448999999987 999999999999 788888887 788999
Q ss_pred eccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 160 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
+|.+..++. .+++|.|+|||+|+||+|.|..|++.+++||+++|++.+... . ..
T Consensus 131 v~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~----------------~---------~~ 184 (305)
T COG0492 131 VSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAE----------------E---------IL 184 (305)
T ss_pred eEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcC----------------H---------HH
Confidence 999999998 899999999999999999999999999999999999753210 0 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC---CeEEecCCc----eeeccEEEE
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG---NIVHFVDDT----HIEVDTIIY 312 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~---~~v~~~dG~----~~~~D~vi~ 312 (433)
.+++.+. . .-.+.....++++.+ .+|.+++.. .+.+|-++.
T Consensus 185 ~~~l~~~----~----------------------------~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~ 232 (305)
T COG0492 185 VERLKKN----V----------------------------KIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFI 232 (305)
T ss_pred HHHHHhc----C----------------------------CeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEE
Confidence 2211100 0 003334567778776 467777642 588999999
Q ss_pred ccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCC-hhhHHHHHHHHHH
Q psy2398 313 ATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIR 373 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~-~~~~a~~qa~~~a 373 (433)
++|+.|+..|+.......+.+++.+... +.|+.|+||++||++.... .+..+-.++-.+|
T Consensus 233 ~iG~~p~~~~~~~~~~~~~~g~I~v~~~-~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa 293 (305)
T COG0492 233 AIGHLPNTELLKGLGVLDENGYIVVDEE-METSVPGIFAAGDVADKNGRQIATAAGDGAIAA 293 (305)
T ss_pred ecCCCCchHHHhhccccCCCCcEEcCCC-cccCCCCEEEeEeeccCcccEEeehhhhHHHHH
Confidence 9999999998875544223455555555 8999999999999997532 3333444433333
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=263.45 Aligned_cols=310 Identities=19% Similarity=0.202 Sum_probs=202.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc-cCC----CCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT-QVP----DYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~ 80 (433)
..||++||||||+|..+|..+++.|.+|.++|+...+||+|.+.. |.|+..+....... .+. .+.......
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~G----CIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVG----CIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeC----ccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 569999999999999999999999999999999888999999873 45544433322221 111 111111111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEe-CcEEEEEEEe-----CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIF-NTEVINLEQY-----EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY 154 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~V~~v~~~-----~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~ 154 (433)
-....++.+..+...+...-...-.+ ...|+-+.-. ++...|...+.++++++++|||||+ .|..|++++.
T Consensus 79 -~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS--~p~~~~~~~~ 155 (454)
T COG1249 79 -KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGS--RPRIPPGPGI 155 (454)
T ss_pred -CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC--CCcCCCCCCC
Confidence 12233333333332222110000001 1122222221 2433443322467999999999999 9999988872
Q ss_pred CCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCch
Q psy2398 155 FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 234 (433)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 234 (433)
....++.+.+.....+ -+++++|||+|.+|+|+|..+++.|.+||++.|.+. ++|..+ +
T Consensus 156 ~~~~~~~s~~~l~~~~-lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~-iLp~~D-------------~------ 214 (454)
T COG1249 156 DGARILDSSDALFLLE-LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR-ILPGED-------------P------ 214 (454)
T ss_pred CCCeEEechhhccccc-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-CCCcCC-------------H------
Confidence 2223555555444443 378999999999999999999999999999999876 444321 1
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeC----CeEEecCCc--eee
Q psy2398 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG----NIVHFVDDT--HIE 306 (433)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~----~~v~~~dG~--~~~ 306 (433)
...+. +.+.+.++.+. ....+++++. ..+.+++|. +++
T Consensus 215 ---ei~~~-------------------------------~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ 260 (454)
T COG1249 215 ---EISKE-------------------------------LTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIE 260 (454)
T ss_pred ---HHHHH-------------------------------HHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEE
Confidence 11111 11111222233 3445555543 246777877 688
Q ss_pred ccEEEEccCCCCCCCCCCc--ccccccC-CccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 307 VDTIIYATGYNRHFPFIDK--EKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 307 ~D~vi~atG~~~~~~~l~~--~~~~~~~-~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+|.|++|+|++|+++-|.. .+++.+. +++.++ ..+.++.|+|||+||+...+.+.+.|..|++.+|.++.|
T Consensus 261 ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 261 ADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred eeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 9999999999999996544 4555544 577777 787888999999999987777899999999999999997
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=270.47 Aligned_cols=307 Identities=18% Similarity=0.181 Sum_probs=196.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEcc---------CCCCCCcccCCCCCCccccceEeecCCCc----ccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEM---------ESDLGGVWNSQASCGRVYPSLHLISPKFN----TQVPDY 73 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~---------~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 73 (433)
.|||+||||||+|+.+|..++++|.+|+|+|+ ...+||+|.+.. |+|+..+...... .....+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~G----ciPsK~l~~~a~~~~~~~~~~~~ 100 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRG----CVPKKILVYGATFGGEFEDAKNY 100 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccC----chhHHHHHHHHHHHHHHHHHHhc
Confidence 48999999999999999999999999999996 356999998762 4554443221111 000111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-----------HHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEcc
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSY-----------AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCN 140 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAt 140 (433)
..............+.+..... ....++ .+. ..++..++ .+.++|++.+|+ ++.||+||+||
T Consensus 101 G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~i-~g~a~~vd--~~~v~V~~~~g~~~~~~~d~LIIAT 175 (499)
T PLN02507 101 GWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGV--KLY-EGEGKIVG--PNEVEVTQLDGTKLRYTAKHILIAT 175 (499)
T ss_pred CcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEE-EEEEEEec--CCEEEEEeCCCcEEEEEcCEEEEec
Confidence 1100000012223333332222 222333 111 22333333 467888887765 47899999999
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChh
Q psy2398 141 GAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTP 220 (433)
Q Consensus 141 G~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~ 220 (433)
|+ .|..|+++|. ....++.+...... .+++|+|||+|.+|+|+|..++..+.+|++++|.+.. ++.+
T Consensus 176 Gs--~p~~p~ipG~--~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~-l~~~------- 242 (499)
T PLN02507 176 GS--RAQRPNIPGK--ELAITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP-LRGF------- 242 (499)
T ss_pred CC--CCCCCCCCCc--cceechHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc-Cccc-------
Confidence 98 8888989881 11122222222222 2689999999999999999999999999999987642 2211
Q ss_pred HHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--e
Q psy2398 221 QWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--I 296 (433)
Q Consensus 221 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~ 296 (433)
+..+.. .+.+ .+. ..++ ++.....++++.+ . .
T Consensus 243 ------d~~~~~-----~l~~----~l~----~~GI-------------------------~i~~~~~V~~i~~~~~~~~ 278 (499)
T PLN02507 243 ------DDEMRA-----VVAR----NLE----GRGI-------------------------NLHPRTNLTQLTKTEGGIK 278 (499)
T ss_pred ------CHHHHH-----HHHH----HHH----hCCC-------------------------EEEeCCEEEEEEEeCCeEE
Confidence 011111 1111 111 1111 3333445566542 2 3
Q ss_pred EEecCCceeeccEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHH
Q psy2398 297 VHFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR 373 (433)
Q Consensus 297 v~~~dG~~~~~D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a 373 (433)
+.+.+|+++++|.||+|+|++|+..++. ...+..+ .+++.+++++ .++.||||++|||.....+.+.|..||+.++
T Consensus 279 v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~-~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa 357 (499)
T PLN02507 279 VITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS-RTNIPSIWAIGDVTNRINLTPVALMEGTCFA 357 (499)
T ss_pred EEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC-cCCCCCEEEeeEcCCCCccHHHHHHHHHHHH
Confidence 5667888899999999999999998753 3344443 3556666554 6899999999999976678889999999999
Q ss_pred HHHhhhh
Q psy2398 374 SYIQAFI 380 (433)
Q Consensus 374 ~~i~g~~ 380 (433)
.++.|..
T Consensus 358 ~ni~g~~ 364 (499)
T PLN02507 358 KTVFGGQ 364 (499)
T ss_pred HHHcCCC
Confidence 9998753
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=268.12 Aligned_cols=307 Identities=20% Similarity=0.211 Sum_probs=199.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecC-------CCcccCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP-------KFNTQVPDYPMPD 77 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 77 (433)
+.++||+||||||+|+++|..|++.|.+|++||+.+.+||+|.+.. |.++..+... .....|..++.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~g----cipsk~l~~~~~~~~~~~~~~~~~~~~~-- 76 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTG----TIPSKALREAVLRLIGFNQNPLYSSYRV-- 76 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccC----CCCHHHHHHHHHHHHHHhhhhhhcccCC--
Confidence 3569999999999999999999999999999999888999997663 2332221110 00001111111
Q ss_pred CCCCCCCHHHHHHH-----------HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCC
Q psy2398 78 NYPVYPNHSMMLDY-----------LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQR 144 (433)
Q Consensus 78 ~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s 144 (433)
....+..++.++ +....++.++ .+..+ ++..+ +.+.+.+...++. .+.||+||+|||+
T Consensus 77 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs-- 147 (461)
T PRK05249 77 --KLRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQG-RARFV--DPHTVEVECPDGEVETLTADKIVIATGS-- 147 (461)
T ss_pred --cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCC--
Confidence 111233333333 3333444454 23333 33333 2466777776664 6899999999998
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhH
Q psy2398 145 VARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML 224 (433)
Q Consensus 145 ~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 224 (433)
.|..|++++.....+.++....... ..+++++|||+|.+|+|+|..+++.+.+|+++.+++.. +|..
T Consensus 148 ~p~~p~~~~~~~~~v~~~~~~~~~~-~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~-l~~~----------- 214 (461)
T PRK05249 148 RPYRPPDVDFDHPRIYDSDSILSLD-HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL-LSFL----------- 214 (461)
T ss_pred CCCCCCCCCCCCCeEEcHHHhhchh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc-CCcC-----------
Confidence 7888877662122344444433332 34789999999999999999999999999999988642 2211
Q ss_pred hhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC--eEEec
Q psy2398 225 QLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN--IVHFV 300 (433)
Q Consensus 225 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~--~v~~~ 300 (433)
.. .+.+.+.+.+. ..++ ++.....++++. +. .+.+.
T Consensus 215 --d~---------~~~~~l~~~l~----~~gI-------------------------~v~~~~~v~~i~~~~~~~~v~~~ 254 (461)
T PRK05249 215 --DD---------EISDALSYHLR----DSGV-------------------------TIRHNEEVEKVEGGDDGVIVHLK 254 (461)
T ss_pred --CH---------HHHHHHHHHHH----HcCC-------------------------EEEECCEEEEEEEeCCeEEEEEC
Confidence 01 11111111111 0111 333344555554 22 34567
Q ss_pred CCceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHh
Q psy2398 301 DDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQ 377 (433)
Q Consensus 301 dG~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~ 377 (433)
+|+++++|.||+|+|++|+..++ +...+..+ .+.+.+++ .+.++.|+||++||+...+...+.|..||+.+|.++.
T Consensus 255 ~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 255 SGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNE-NYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAV 333 (461)
T ss_pred CCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCC-CcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHc
Confidence 88889999999999999998865 33344443 34566654 4578899999999998766778899999999999998
Q ss_pred hhh
Q psy2398 378 AFI 380 (433)
Q Consensus 378 g~~ 380 (433)
|..
T Consensus 334 g~~ 336 (461)
T PRK05249 334 GEA 336 (461)
T ss_pred CCC
Confidence 763
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=264.88 Aligned_cols=291 Identities=16% Similarity=0.176 Sum_probs=211.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
...+||+||||||+|++||.+|++.|++++++++. +||.|..... ++ .+.. . .+..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~----~~-----------~~~~------~-~~~~ 264 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMG----IE-----------NFIS------V-PETE 264 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCc----cc-----------ccCC------C-CCCC
Confidence 34689999999999999999999999999999863 8988754200 00 0000 0 1345
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceecc
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHS 162 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~ 162 (433)
..++.+++...++++++ .++++++|+.++..++.|.|++.++..+.||.||+|||. .++.|++|| .|.+..+|.
T Consensus 265 ~~~l~~~l~~~~~~~gv--~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~--~~r~~~ipG~~~~~~~~v~~ 340 (517)
T PRK15317 265 GPKLAAALEEHVKEYDV--DIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA--RWRNMNVPGEDEYRNKGVAY 340 (517)
T ss_pred HHHHHHHHHHHHHHCCC--EEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC--CcCCCCCCCHHHhcCceEEE
Confidence 67899999999999998 588899999999877889999888888999999999999 678888998 566666666
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 163 ~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
+...+...+++|+|+|||+|++|+|+|..|+..+++|+++.+.+..... . .+.+.
T Consensus 341 ~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~--------------------~-----~l~~~ 395 (517)
T PRK15317 341 CPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKAD--------------------Q-----VLQDK 395 (517)
T ss_pred eeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccccc--------------------H-----HHHHH
Confidence 5555555578999999999999999999999999999999987642100 0 11111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEEec---CCc--eeeccEEEE
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVHFV---DDT--HIEVDTIIY 312 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~~~---dG~--~~~~D~vi~ 312 (433)
+. . ..++ ++.....+.++.+. .+.+. +|. ++++|.|++
T Consensus 396 l~----~---~~gI-------------------------~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~ 443 (517)
T PRK15317 396 LR----S---LPNV-------------------------TIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFV 443 (517)
T ss_pred Hh----c---CCCc-------------------------EEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEE
Confidence 00 0 0011 22233445555433 24443 343 489999999
Q ss_pred ccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhhhhcC
Q psy2398 313 ATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFIRK 382 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g~~~l 382 (433)
|+|++|+.++++.. +.. ..+++.+++. +.++.|+||++||+...+ ..+..|..++..+|..+...+..
T Consensus 444 ~~G~~p~~~~l~~~-v~~~~~g~i~vd~~-l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 444 QIGLVPNTEWLKGT-VELNRRGEIIVDAR-GATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred eECCccCchHHhhh-eeeCCCCcEEECcC-CCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhh
Confidence 99999999998754 444 3355655554 468999999999998753 44667888888888777655443
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=264.50 Aligned_cols=302 Identities=20% Similarity=0.219 Sum_probs=189.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 82 (433)
.+||+||||||+|++||..|++.|.+|+++|+. .+||+|.+.. |.|+..+..... +.....+..+......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVG----CVPKKVMWYASDLAERMHDAADYGFYQNLENT 76 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccC----cCccHHHHHHHHHHHHHhHHhhcCcccCCcCc
Confidence 589999999999999999999999999999995 6999998763 344321111100 0001111111110001
Q ss_pred CCHHHHHHH-----------HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC-C
Q psy2398 83 PNHSMMLDY-----------LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP-N 150 (433)
Q Consensus 83 ~~~~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p-~ 150 (433)
....++.++ +....++.++ .+..++.+. .+++ +|.. ++..+.||+||+|||+ .|..| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~~---~~~~--~v~v-~~~~~~~d~vIiAtGs--~p~~p~~ 146 (450)
T TIGR01421 77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHARF---TKDG--TVEV-NGRDYTAPHILIATGG--KPSFPEN 146 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE---ccCC--EEEE-CCEEEEeCEEEEecCC--CCCCCCC
Confidence 122222222 3333334444 344443321 1123 3444 4457999999999998 78888 8
Q ss_pred CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 151 YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 151 i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
+||.- ....+..+..... .+++++|||+|.+|+|+|..|+..+.+||++.|.+.. ++.+ +..+
T Consensus 147 i~g~~--~~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i-l~~~-------------d~~~ 209 (450)
T TIGR01421 147 IPGAE--LGTDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV-LRSF-------------DSMI 209 (450)
T ss_pred CCCCc--eeEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC-Cccc-------------CHHH
Confidence 88821 1122222222222 3689999999999999999999999999999988642 2221 1111
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-----CeEEecCC-ce
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-----NIVHFVDD-TH 304 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-----~~v~~~dG-~~ 304 (433)
.. .+.+. +. ..++ ++.....++++.+ ..+.+++| ++
T Consensus 210 ~~-----~~~~~----l~----~~gI-------------------------~i~~~~~v~~i~~~~~~~~~v~~~~g~~~ 251 (450)
T TIGR01421 210 SE-----TITEE----YE----KEGI-------------------------NVHKLSKPVKVEKTVEGKLVIHFEDGKSI 251 (450)
T ss_pred HH-----HHHHH----HH----HcCC-------------------------EEEcCCEEEEEEEeCCceEEEEECCCcEE
Confidence 11 11111 11 1111 2223344555542 23567788 56
Q ss_pred eeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 305 IEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+++|.||+|+|++|+..+| +...+..+ .+.+.+++. +.|+.|+||++|||+......+.|..||+.+|++|.+.
T Consensus 252 i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 252 DDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-QNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred EEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-CcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999865 33344443 345655554 67899999999999977778889999999999999864
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=243.16 Aligned_cols=189 Identities=33% Similarity=0.546 Sum_probs=139.5
Q ss_pred EEECCChHHHHHHHHHHhcCCC-eEEEccCCCCCCcccCCCCCCccccceEeecCCCc---ccCCCCCCC--------CC
Q psy2398 11 CIIGGGPLGIGLGRELSEGNIN-YDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFN---TQVPDYPMP--------DN 78 (433)
Q Consensus 11 ~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~ 78 (433)
+||||||+||++|.+|+++|++ ++|||+++.+||.|....+ ...+.++... ..++++... .+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYS------YTRLHSPSFFSSDFGLPDFESFSFDDSPEWRW 74 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-T------TTT-BSSSCCTGGSS--CCCHSCHHHHHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCC------CCccccCccccccccCCcccccccccCCCCCC
Confidence 6999999999999999999998 9999999999999996422 2222222211 111111110 01
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCC
Q psy2398 79 YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG 157 (433)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g 157 (433)
...+++..++.+|++.+++++++. ++++++|++++++++.|.|++.++.++.||+||+|||.++.|+.|+++| .+.
T Consensus 75 ~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~- 151 (203)
T PF13738_consen 75 PHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR- 151 (203)
T ss_dssp SBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-
T ss_pred CcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-
Confidence 235688999999999999999984 9999999999999888999999987899999999999999999999999 555
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 208 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~ 208 (433)
..+|+.++.+...+++|+|+|||+|.||+|+|..|++.+++|++++|++.|
T Consensus 152 ~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 152 PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 788999999999999999999999999999999999999999999999865
|
... |
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=259.92 Aligned_cols=302 Identities=15% Similarity=0.144 Sum_probs=195.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 82 (433)
.|||+||||||+|++||..++++|.+|+++|+ +.+||+|.+.. |.|+..+..+.. +..+..+........
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~- 75 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRG----CVPKKLMVYGSTFGGEFEDAAGYGWTVGKAR- 75 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCC----cCchHHHHHHHHHHHHHhhhHhcCcCCCCCC-
Confidence 48999999999999999999999999999998 47999998763 444432211111 111111111000000
Q ss_pred CCH-----------HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCC
Q psy2398 83 PNH-----------SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 83 ~~~-----------~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
... ..+.++++...++.++ .+.. .++..++. +...+. .++..+.||+||+|||+ .|..|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~-g~~~~v~~--~~v~v~-~~g~~~~~d~lIiATGs--~p~~p~i 147 (446)
T TIGR01424 76 FDWKKLLQKKDDEIARLSGLYKRLLANAGV--ELLE-GRARLVGP--NTVEVL-QDGTTYTAKKILIAVGG--RPQKPNL 147 (446)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-EEEEEecC--CEEEEe-cCCeEEEcCEEEEecCC--cCCCCCC
Confidence 111 2234445555556666 2433 35555543 344443 35667999999999998 8889999
Q ss_pred CC-CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 152 SG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 152 ~g-~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
+| .. .+.+.+..... ..+++++|||+|.+|+|+|..+++.+.+|+++.+.+.. ++.. +.
T Consensus 148 ~G~~~---~~~~~~~~~l~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~-l~~~-------------d~-- 207 (446)
T TIGR01424 148 PGHEL---GITSNEAFHLP-TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI-LRGF-------------DD-- 207 (446)
T ss_pred CCccc---eechHHhhccc-ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC-Cccc-------------CH--
Confidence 88 21 12222222211 23689999999999999999999999999999987642 2211 01
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEEecCCceee
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFVDDTHIE 306 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~~~dG~~~~ 306 (433)
...+.+.+.+. ..++ ++.....+.+++. ..+.+.+|++++
T Consensus 208 -------~~~~~l~~~l~----~~gV-------------------------~i~~~~~v~~i~~~~~~~~v~~~~g~~i~ 251 (446)
T TIGR01424 208 -------DMRALLARNME----GRGI-------------------------RIHPQTSLTSITKTDDGLKVTLSHGEEIV 251 (446)
T ss_pred -------HHHHHHHHHHH----HCCC-------------------------EEEeCCEEEEEEEcCCeEEEEEcCCcEee
Confidence 11111111111 1111 2333444555542 235667888999
Q ss_pred ccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 307 VDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 307 ~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+|.||+|+|++|+...+ +...+..+ .+++.+++. +.|+.|+||++|||.....+.+.|..||+.++.++.|.
T Consensus 252 ~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 252 ADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEY-SRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred cCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCC-CccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 99999999999998864 33344443 345666655 47899999999999977778889999999999999874
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=261.03 Aligned_cols=288 Identities=17% Similarity=0.181 Sum_probs=205.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
...+||+||||||+|++||..|++.|++|++++. .+||.+..... +. .+... ....
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~----~~-----------~~~~~-------~~~~ 265 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG----IE-----------NLISV-------PYTT 265 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC----cc-----------ccccc-------CCCC
Confidence 3468999999999999999999999999999985 58887754200 00 00000 1234
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceecc
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHS 162 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~ 162 (433)
..++.+++.+.++.+++ .++.+++|+.++.+++.+.+++.++..+.||+||+|||+ .|+.|+++| .+.+..++.
T Consensus 266 ~~~l~~~l~~~l~~~gv--~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa--~~~~~~ipG~~~~~~~~v~~ 341 (515)
T TIGR03140 266 GSQLAANLEEHIKQYPI--DLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA--RWRKLGVPGEKEYIGKGVAY 341 (515)
T ss_pred HHHHHHHHHHHHHHhCC--eEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC--CcCCCCCCCHHHcCCCeEEE
Confidence 67788888888888887 588899999998877789999888888999999999998 678888988 444444444
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 163 ~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
....+...+.+++|+|||+|.+|+|+|..|+..+++|+++.+.+..... . .+.+.
T Consensus 342 ~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~--------------------~-----~l~~~ 396 (515)
T TIGR03140 342 CPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKAD--------------------K-----VLQDK 396 (515)
T ss_pred eeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChh--------------------H-----HHHHH
Confidence 4333333456899999999999999999999999999999876532100 0 11111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEEecC---C--ceeeccEEEE
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVHFVD---D--THIEVDTIIY 312 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~~~d---G--~~~~~D~vi~ 312 (433)
+.. ..++ .+.....+.++.+. .|.+.+ | +++++|.||+
T Consensus 397 ----l~~---~~gV-------------------------~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~ 444 (515)
T TIGR03140 397 ----LKS---LPNV-------------------------DILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444 (515)
T ss_pred ----Hhc---CCCC-------------------------EEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 100 0111 23334455566433 355544 2 3589999999
Q ss_pred ccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhhh
Q psy2398 313 ATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g~ 379 (433)
|+|++|+.++++.. +.. ..+.+.+++ .+.++.|+||++|||+..+ ..+..|..||..+|..+.+.
T Consensus 445 a~G~~Pn~~~l~~~-~~~~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 445 QIGLVPNTEWLKDA-VELNRRGEIVIDE-RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred EeCCcCCchHHhhh-cccCCCCeEEECC-CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHH
Confidence 99999999998754 444 334565555 4578999999999998753 34557888888888877654
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=262.02 Aligned_cols=303 Identities=18% Similarity=0.188 Sum_probs=193.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cccC-CCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQV-PDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~ 80 (433)
..+||+||||||+|++||..|+++|.+|+|||+. .+||+|.+.. |.|+..+..... +..+ ..+......+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~g----ciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVG----CVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN 77 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccC----cchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence 4589999999999999999999999999999985 7999987752 344332111100 0000 0000000000
Q ss_pred CCCCHHHHH-----------HHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 81 VYPNHSMML-----------DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 81 ~~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
......+. +.+.....+.++ .+..+ +++.++ . .+|++ ++..+.||+||+|||+ .|..|
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~v~--~--~~v~~-~g~~~~~d~lViATGs--~p~~p 146 (450)
T PRK06116 78 -KFDWAKLIANRDAYIDRLHGSYRNGLENNGV--DLIEG-FARFVD--A--HTVEV-NGERYTADHILIATGG--RPSIP 146 (450)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc--C--CEEEE-CCEEEEeCEEEEecCC--CCCCC
Confidence 11122222 222333334454 23333 344443 2 34555 5667999999999998 88999
Q ss_pred CCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 150 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 150 ~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
+++|. ....++........ .+++|+|||+|.+|+|+|..+.+.+.+|+++.|++.. ++.. +..
T Consensus 147 ~i~g~--~~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~-------------~~~ 209 (450)
T PRK06116 147 DIPGA--EYGITSDGFFALEE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP-LRGF-------------DPD 209 (450)
T ss_pred CCCCc--ceeEchhHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC-cccc-------------CHH
Confidence 99881 12333333332222 3689999999999999999999999999999987642 2211 011
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-----CeEEecCCce
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-----NIVHFVDDTH 304 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-----~~v~~~dG~~ 304 (433)
+.. .+.+. +. ..++ ++.....+.++.. ..+.+.+|++
T Consensus 210 ~~~-----~l~~~----L~----~~GV-------------------------~i~~~~~V~~i~~~~~g~~~v~~~~g~~ 251 (450)
T PRK06116 210 IRE-----TLVEE----ME----KKGI-------------------------RLHTNAVPKAVEKNADGSLTLTLEDGET 251 (450)
T ss_pred HHH-----HHHHH----HH----HCCc-------------------------EEECCCEEEEEEEcCCceEEEEEcCCcE
Confidence 111 11111 11 1111 2333445666642 2356778989
Q ss_pred eeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 305 IEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+++|.||+|+|++|+.+++ +...+..+ .+.+.++++ +.++.|+||++|||.......+.|..||+.+|++|.|..
T Consensus 252 i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 329 (450)
T PRK06116 252 LTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEY-QNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNK 329 (450)
T ss_pred EEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCC-CCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999864 33344443 455666655 578999999999998766778899999999999998843
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=261.72 Aligned_cols=312 Identities=16% Similarity=0.176 Sum_probs=197.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCC-CCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVP-DYPMPDN 78 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~ 78 (433)
+...+||+||||||+|+++|..|++.|.+|+|||+. .+||+|.+.. |.|+..+.....+. .++ .+.....
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~G----ciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIG----CVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCC----ccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 567799999999999999999999999999999986 6999998652 33333221110000 000 0111101
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------C--CcceEe-CcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCCCC
Q psy2398 79 YPVYPNHSMMLDYLRSYAKKFD-------V--YNHSIF-NTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~-------~--~~~i~~-~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p 146 (433)
.+ -.....+.++.++....+. + ...+.+ ..++..++ .+.|+|++.++. ++.||+||+|||+ .|
T Consensus 78 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id--~~~~~V~~~~g~~~~~~~d~lViATGs--~p 152 (468)
T PRK14694 78 AP-VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD--ERTLTVTLNDGGEQTVHFDRAFIGTGA--RP 152 (468)
T ss_pred CC-ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec--CCEEEEEecCCCeEEEECCEEEEeCCC--CC
Confidence 11 1234455544444433221 0 001221 23444443 567899888763 6899999999998 88
Q ss_pred CCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhh
Q psy2398 147 RYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 226 (433)
Q Consensus 147 ~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 226 (433)
..|+++|.....++++....... ..+++++|||+|.+|+|+|..|.+.+.+|+++.+.. ++|...
T Consensus 153 ~~p~i~G~~~~~~~~~~~~~~l~-~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~--~l~~~~------------ 217 (468)
T PRK14694 153 AEPPVPGLAETPYLTSTSALELD-HIPERLLVIGASVVALELAQAFARLGSRVTVLARSR--VLSQED------------ 217 (468)
T ss_pred CCCCCCCCCCCceEcchhhhchh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC--CCCCCC------------
Confidence 99999982222344443332222 236899999999999999999999999999998642 233210
Q ss_pred chhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeEEe-cCCc
Q psy2398 227 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIVHF-VDDT 303 (433)
Q Consensus 227 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v~~-~dG~ 303 (433)
. .+.+.+.+.+. ..++ ++.....++++.. ..+.+ .++.
T Consensus 218 -~---------~~~~~l~~~l~----~~GI-------------------------~v~~~~~v~~i~~~~~~~~v~~~~~ 258 (468)
T PRK14694 218 -P---------AVGEAIEAAFR----REGI-------------------------EVLKQTQASEVDYNGREFILETNAG 258 (468)
T ss_pred -H---------HHHHHHHHHHH----hCCC-------------------------EEEeCCEEEEEEEcCCEEEEEECCC
Confidence 0 11111111111 1111 2333445555542 22222 2344
Q ss_pred eeeccEEEEccCCCCCCCCCCc--ccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 304 HIEVDTIIYATGYNRHFPFIDK--EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 304 ~~~~D~vi~atG~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
++++|.||+|+|.+|+..++.. ..+..+.+.+.++++ +.++.|+||++||++..+...+.|..|++.+|.+|.|..
T Consensus 259 ~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~ 336 (468)
T PRK14694 259 TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH-LQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGD 336 (468)
T ss_pred EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC-cccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 6999999999999999988642 233444455666655 478999999999999877788899999999999998753
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=262.04 Aligned_cols=306 Identities=18% Similarity=0.193 Sum_probs=193.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc----CCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 81 (433)
..+||+||||||+|++||..|+++|.+|+++|+.. +||+|.+.. |.|+..+........ +..+..... ..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~g----ciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~ 76 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRG----CIPSKALLHAAERADEARHSEDFGIKAE-NV 76 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecc----cCCcHHHHHhhhHHHHHHHHHhcCcccC-CC
Confidence 46899999999999999999999999999999976 999987652 344333222111111 111111000 11
Q ss_pred CCCHHHHHHHHHHH-----------HHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEEccCCCCCCCCC
Q psy2398 82 YPNHSMMLDYLRSY-----------AKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 82 ~~~~~~~~~~l~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIvAtG~~s~p~~p 149 (433)
......+.+|.+.. .++.++ .+..+ +++.++ .+.+++...+ +.++.||+||+|||+ .|..|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~~~--~~~~~v~~~~~~~~~~~d~lViAtGs--~p~~~ 149 (462)
T PRK06416 77 GIDFKKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIRG-EAKLVD--PNTVRVMTEDGEQTYTAKNIILATGS--RPREL 149 (462)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc--CCEEEEecCCCcEEEEeCEEEEeCCC--CCCCC
Confidence 23445555554333 333444 23333 333332 3556665433 357999999999998 56543
Q ss_pred CCCC-CCCCcee-ccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 150 NYSG-YFSGEIL-HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 150 ~i~g-~~~g~~~-~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
|| ...+..+ ++.+..... ..+++++|||+|.+|+|+|..|.+.+.+||++.|.+. ++|...
T Consensus 150 --pg~~~~~~~v~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~~~------------- 212 (462)
T PRK06416 150 --PGIEIDGRVIWTSDEALNLD-EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR-ILPGED------------- 212 (462)
T ss_pred --CCCCCCCCeEEcchHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC-cCCcCC-------------
Confidence 34 3333323 333332222 2468999999999999999999999999999998764 223210
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--Ce--EEecCC-
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NI--VHFVDD- 302 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~--v~~~dG- 302 (433)
. ...+.+.+.+. ..++ ++.....+.++++ .. +.+.+|
T Consensus 213 ~---------~~~~~l~~~l~----~~gV-------------------------~i~~~~~V~~i~~~~~~v~v~~~~gg 254 (462)
T PRK06416 213 K---------EISKLAERALK----KRGI-------------------------KIKTGAKAKKVEQTDDGVTVTLEDGG 254 (462)
T ss_pred H---------HHHHHHHHHHH----HcCC-------------------------EEEeCCEEEEEEEeCCEEEEEEEeCC
Confidence 1 11111111111 1111 3333455666643 23 345566
Q ss_pred --ceeeccEEEEccCCCCCCCCCC--cccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 303 --THIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 303 --~~~~~D~vi~atG~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+++++|.||+|+|++|+..++. ...+..+.+++.++.++ .++.|+||++|||...+.....|..||+.+|.+|.|
T Consensus 255 ~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~-~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 255 KEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQL-RTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred eeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCC-ccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcC
Confidence 6799999999999999998763 34444454556665544 688999999999987667888999999999999998
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
..
T Consensus 334 ~~ 335 (462)
T PRK06416 334 NP 335 (462)
T ss_pred CC
Confidence 53
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-31 Score=259.89 Aligned_cols=313 Identities=13% Similarity=0.085 Sum_probs=192.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVPDYPMPDNY 79 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 79 (433)
.+.++||+|||||++|+++|..|+++|.+|+++|+.+.+||+|.+.. |.|+..+..+.... ..+.+......
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~G----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 88 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVG----CVPSKILIRAAQLAHQQRSNPFDGVEAVA 88 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecccc----ccccHHHHHHHHHHHHHhhccccCcccCC
Confidence 34568999999999999999999999999999999888999999763 44544322211110 01111111111
Q ss_pred CCCCCHHHHHHHHHHHHHHcC---CCcceEeCcEEEEE----EE-eCCeEEEEEccCc--EEEeCEEEEccCCCCCCCCC
Q psy2398 80 PVYPNHSMMLDYLRSYAKKFD---VYNHSIFNTEVINL----EQ-YEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~---~~~~i~~~~~V~~v----~~-~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p~~p 149 (433)
+. .....+..........+. ....+..+..|.-+ .. +.+.+.|.+.++. ++.||+||+|||+ .|..|
T Consensus 89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~p 165 (479)
T PRK14727 89 PS-IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS--TPTIP 165 (479)
T ss_pred Cc-cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC--CCCCC
Confidence 11 122233222222221110 00001111112211 12 2567788776664 5899999999998 88999
Q ss_pred CCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 150 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 150 ~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
+++|.......++.+.... ...+++++|||+|.+|+|+|..+.+.+.+|+++.+.. +++... .
T Consensus 166 ~i~G~~~~~~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~--~l~~~d-------------~- 228 (479)
T PRK14727 166 PIPGLMDTPYWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARST--LLFRED-------------P- 228 (479)
T ss_pred CCCCcCccceecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC--CCCcch-------------H-
Confidence 9998322223333222211 2236899999999999999999999999999998752 333210 0
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCe--EEecCCcee
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNI--VHFVDDTHI 305 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~--v~~~dG~~~ 305 (433)
...+.+.+.+. ..++ ++.....++++. +.. +.+.+| ++
T Consensus 229 --------~~~~~l~~~L~----~~GV-------------------------~i~~~~~V~~i~~~~~~~~v~~~~g-~i 270 (479)
T PRK14727 229 --------LLGETLTACFE----KEGI-------------------------EVLNNTQASLVEHDDNGFVLTTGHG-EL 270 (479)
T ss_pred --------HHHHHHHHHHH----hCCC-------------------------EEEcCcEEEEEEEeCCEEEEEEcCC-eE
Confidence 11111111111 1111 222233455543 222 333444 58
Q ss_pred eccEEEEccCCCCCCCCCCc--cccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 306 EVDTIIYATGYNRHFPFIDK--EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 306 ~~D~vi~atG~~~~~~~l~~--~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
++|.||+|+|++|+..+|.. ..+..+ .+.+.+++. +.++.|+||++|||...+...+.|..||+.+|.++.|.
T Consensus 271 ~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 271 RAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPA-METSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred EeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCC-eecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 99999999999999887543 344443 355666655 57899999999999987777889999999999999875
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-31 Score=259.20 Aligned_cols=306 Identities=16% Similarity=0.165 Sum_probs=189.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVPDYPMPDNYP 80 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 80 (433)
..++||+||||||+|++||..|++.|.+|+|||+. .+||+|.+.. |.|+..+..+.... ....+..+....
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTG----CVPTKTLIASARAAHLARRAAEYGVSVGGP 77 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccc----cCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 35699999999999999999999999999999985 6899887653 33332111110000 000111110000
Q ss_pred CCCCHHHHHHHHHH-----------HHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRS-----------YAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 81 ~~~~~~~~~~~l~~-----------~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.......+.++.+. ..++. ++ .+..++.+. .+.+ +|+. ++.++.||+||+|||+ .|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~~---~~~~--~v~v-~~~~~~~d~lViATGs--~p~~ 147 (463)
T PRK06370 78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHARF---ESPN--TVRV-GGETLRAKRIFINTGA--RAAI 147 (463)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEEE---ccCC--EEEE-CcEEEEeCEEEEcCCC--CCCC
Confidence 01223333333322 22222 33 233343321 1122 3444 3457899999999998 8899
Q ss_pred CCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
|+++|.....++++.+..... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.+. ++|... .
T Consensus 148 p~i~G~~~~~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~-~l~~~~-------------~ 212 (463)
T PRK06370 148 PPIPGLDEVGYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR-LLPRED-------------E 212 (463)
T ss_pred CCCCCCCcCceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC-CCcccC-------------H
Confidence 999982222344444433322 2368999999999999999999999999999998764 222110 0
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--Ce--EEe--c-C
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NI--VHF--V-D 301 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~--v~~--~-d 301 (433)
...+.+.+.+. ..++ ++.....+.++++ .. +.+ . +
T Consensus 213 ---------~~~~~l~~~l~----~~GV-------------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~ 254 (463)
T PRK06370 213 ---------DVAAAVREILE----REGI-------------------------DVRLNAECIRVERDGDGIAVGLDCNGG 254 (463)
T ss_pred ---------HHHHHHHHHHH----hCCC-------------------------EEEeCCEEEEEEEcCCEEEEEEEeCCC
Confidence 11111111111 1111 2333445566642 22 333 2 3
Q ss_pred CceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 302 DTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 302 G~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+.++++|.||+|+|++|+...| +...+..+ .+.+.+++. +.++.|+||++|||.....+.+.|..||+.+|++|.+
T Consensus 255 ~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 255 APEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQ-LRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred ceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcC-CcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 4569999999999999998843 43444443 345666655 5789999999999987777788899999999999987
Q ss_pred h
Q psy2398 379 F 379 (433)
Q Consensus 379 ~ 379 (433)
.
T Consensus 334 ~ 334 (463)
T PRK06370 334 G 334 (463)
T ss_pred C
Confidence 5
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-31 Score=255.06 Aligned_cols=287 Identities=15% Similarity=0.185 Sum_probs=191.9
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC-CCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV-YPN 84 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 84 (433)
++|+|||||++|+.+|..|+++ +.+|++||+.+..+ +... .. |..... ...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~-----~l-------------------p~~~~~~~~~ 55 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANC-----AL-------------------PYYIGEVVED 55 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccC-----Cc-------------------chhhcCccCC
Confidence 4899999999999999999887 67999999987652 1100 00 000000 111
Q ss_pred HHHHHHH-HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-Cc--EEEeCEEEEccCCCCCCCCCCCCCCCCCcee
Q psy2398 85 HSMMLDY-LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 160 (433)
Q Consensus 85 ~~~~~~~-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~--~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~ 160 (433)
..+...+ ...+.++.++ .++++++|++|+.+.+.+.+...+ +. .+.||+||+|||+ .|+.|++++ ..++
T Consensus 56 ~~~~~~~~~~~~~~~~~i--~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs--~~~~~~~~~---~~~~ 128 (438)
T PRK13512 56 RKYALAYTPEKFYDRKQI--TVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA--SANSLGFES---DITF 128 (438)
T ss_pred HHHcccCCHHHHHHhCCC--EEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC--CCCCCCCCC---CCeE
Confidence 1222221 1234455676 577889999999877766665532 22 3689999999998 777777654 1111
Q ss_pred ccCCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCc
Q psy2398 161 HSMDYKSP-------DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 233 (433)
Q Consensus 161 ~~~~~~~~-------~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 233 (433)
......+. ....+++++|||+|.+|+|+|..|++.+.+|+++.+.+.. ++.. +.
T Consensus 129 ~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l-~~~~-------------d~----- 189 (438)
T PRK13512 129 TLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI-NKLM-------------DA----- 189 (438)
T ss_pred EecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc-chhc-------------CH-----
Confidence 11111110 1123689999999999999999999999999999987642 2211 01
Q ss_pred hHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEEc
Q psy2398 234 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYA 313 (433)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~a 313 (433)
...+.+.+.+ ...++ ++.....++++++..+++++|+++++|.||+|
T Consensus 190 ----~~~~~l~~~l----~~~gI-------------------------~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a 236 (438)
T PRK13512 190 ----DMNQPILDEL----DKREI-------------------------PYRLNEEIDAINGNEVTFKSGKVEHYDMIIEG 236 (438)
T ss_pred ----HHHHHHHHHH----HhcCC-------------------------EEEECCeEEEEeCCEEEECCCCEEEeCEEEEC
Confidence 1111111111 11111 33445677888777888989999999999999
Q ss_pred cCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhhh
Q psy2398 314 TGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 314 tG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|++|+.++++...+..+ .+++.+++. +.++.|+||++|||+.. ....+.|..||+.+|+++.|..
T Consensus 237 ~G~~pn~~~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~ 313 (438)
T PRK13512 237 VGTHPNSKFIESSNIKLDDKGFIPVNDK-FETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGND 313 (438)
T ss_pred cCCCcChHHHHhcCcccCCCCcEEECCC-cccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCC
Confidence 999999998876656553 456777655 46889999999999752 2345668899999999998853
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=247.54 Aligned_cols=302 Identities=19% Similarity=0.269 Sum_probs=208.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
+++|+|||||++|+.+|..|.+.. .+++++|+++.. . ++.+.. +-..+..+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h--l----------~~plL~---------------eva~g~l~ 55 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH--L----------FTPLLY---------------EVATGTLS 55 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc--c----------cchhhh---------------hhhcCCCC
Confidence 479999999999999999999974 899999998743 1 111110 01112333
Q ss_pred HHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCC--ce
Q psy2398 85 HSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG--EI 159 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g--~~ 159 (433)
..++..-++..+...+ + -....+|++|+.+.+ +|++.++..+.||++|+|+|+ .+..+.+|| ++.- ..
T Consensus 56 ~~~i~~p~~~~~~~~~~v---~~~~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs--~~~~fgi~G~~E~a~~lks 128 (405)
T COG1252 56 ESEIAIPLRALLRKSGNV---QFVQGEVTDIDRDAK--KVTLADLGEISYDYLVVALGS--ETNYFGIPGAAEYAFGLKT 128 (405)
T ss_pred hhheeccHHHHhcccCce---EEEEEEEEEEcccCC--EEEeCCCccccccEEEEecCC--cCCcCCCCCHHHhCCCCCC
Confidence 4455555555565443 3 233668999988555 566667667999999999999 889999998 2221 11
Q ss_pred ec-cCCC--------CCCCCCC----CCeEEEEcCCCCHHHHHHHHhccCC-------------cEEEEEecCceeeccc
Q psy2398 160 LH-SMDY--------KSPDQIR----NKRVLVVGAGNSGCDIAVDASHHSE-------------KVYHSTRRGYHYYPKF 213 (433)
Q Consensus 160 ~~-~~~~--------~~~~~~~----~~~v~VvG~G~sg~d~a~~l~~~~~-------------~V~~~~r~~~~~~p~~ 213 (433)
+. +..+ ...+... -.+++|+|||++|+|+|.+|..... +|+++.+.+. ++|.
T Consensus 129 ~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~-ILp~- 206 (405)
T COG1252 129 LEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR-ILPM- 206 (405)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch-hccC-
Confidence 10 1000 0111111 1379999999999999999987521 7889988775 3332
Q ss_pred CCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee
Q psy2398 214 IDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN 293 (433)
Q Consensus 214 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~ 293 (433)
+|+.++. ...+.+ ++.|+ ++..+..|++++
T Consensus 207 ------------~~~~l~~-----~a~~~L--------~~~GV-------------------------~v~l~~~Vt~v~ 236 (405)
T COG1252 207 ------------FPPKLSK-----YAERAL--------EKLGV-------------------------EVLLGTPVTEVT 236 (405)
T ss_pred ------------CCHHHHH-----HHHHHH--------HHCCC-------------------------EEEcCCceEEEC
Confidence 3333333 222221 22333 566688999999
Q ss_pred CCeEEecCCce-eeccEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEcccccc------CChhhH
Q psy2398 294 GNIVHFVDDTH-IEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA------AGLGDG 364 (433)
Q Consensus 294 ~~~v~~~dG~~-~~~D~vi~atG~~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~------~~~~~~ 364 (433)
.++|++++|.+ +++|.+|||+|.+++ +++.. ...+.+ .+++.+.+.+..+++|+||++|||+.. ++..+.
T Consensus 237 ~~~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~ 315 (405)
T COG1252 237 PDGVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQA 315 (405)
T ss_pred CCcEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHH
Confidence 99999999995 999999999999998 77664 234443 478889999999999999999999943 467789
Q ss_pred HHHHHHHHHHHHhhhh----cCCCcchhHHHHhhc
Q psy2398 365 LRLQGQFIRSYIQAFI----RKSKGYLKFLNAKKN 395 (433)
Q Consensus 365 a~~qa~~~a~~i~g~~----~lp~~~~~~~~m~~~ 395 (433)
|.+||+++|++|..+. ..|.+|.+...|...
T Consensus 316 A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~Gtl~~l 350 (405)
T COG1252 316 AHQQGEYAAKNIKARLKGKPLKPFKYKDKGTLASL 350 (405)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccceEEEEEc
Confidence 9999999999996554 456665554444433
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=254.88 Aligned_cols=308 Identities=19% Similarity=0.231 Sum_probs=188.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc-c----CCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT-Q----VPDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~ 80 (433)
.++||+||||||+|++||..|++.|.+|++||+. .+||+|.... |.|+..+.....+. . ...+.... .
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~g----ciPsk~l~~~~~~~~~~~~~~~~~gi~~--~ 75 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVG----CIPSKALLRNAELAHIFTKEAKTFGISG--E 75 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCC----ccccHHHHhhHHHHHHHHHHHHhcCCCc--C
Confidence 3589999999999999999999999999999985 6899988763 33432211110000 0 00011100 0
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCcceEe-CcEEEEEEE-----eCCeEEEEEccC--cEEEeCEEEEccCCCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKF--DVYNHSIF-NTEVINLEQ-----YEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~--~~~~~i~~-~~~V~~v~~-----~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
.......+.+..+...++. ++ +..+ ...|+.++. +.+.+.+...++ .++.||+||+|||+ .|..|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~~- 150 (466)
T PRK07818 76 VTFDYGAAFDRSRKVAEGRVKGV--HFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGS--STRLL- 150 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHHHH--HHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCC--CCCCC-
Confidence 1122233333333222211 11 0111 113333332 245566665554 36899999999998 66553
Q ss_pred CCC-CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 151 YSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 151 i~g-~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
|| .+.+.++.+.+.... ...+++++|||+|.+|+|+|..+++.+.+|+++.+.+. ++|... .
T Consensus 151 -pg~~~~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-~l~~~d-------------~- 213 (466)
T PRK07818 151 -PGTSLSENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-ALPNED-------------A- 213 (466)
T ss_pred -CCCCCCCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC-cCCccC-------------H-
Confidence 44 223334433322111 23468999999999999999999999999999998764 233210 0
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEec--CCc
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFV--DDT 303 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~--dG~ 303 (433)
...+.+.+.+. ..++ ++.....++++.+. .+.+. +|+
T Consensus 214 --------~~~~~l~~~l~----~~gV-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~~g~ 256 (466)
T PRK07818 214 --------EVSKEIAKQYK----KLGV-------------------------KILTGTKVESIDDNGSKVTVTVSKKDGK 256 (466)
T ss_pred --------HHHHHHHHHHH----HCCC-------------------------EEEECCEEEEEEEeCCeEEEEEEecCCC
Confidence 11111111111 1111 33345556666432 23443 674
Q ss_pred --eeeccEEEEccCCCCCCCCC--Ccccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 304 --HIEVDTIIYATGYNRHFPFI--DKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 304 --~~~~D~vi~atG~~~~~~~l--~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
++++|.||+|+|++|+..++ +...+.. +.+.+.+++. +.++.|+||++||+.....+.+.|..||+.+|.+|.|
T Consensus 257 ~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~-~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 257 AQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY-MRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred eEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC-cccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 68999999999999998864 3344444 3345666655 5789999999999987677888999999999999998
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
..
T Consensus 336 ~~ 337 (466)
T PRK07818 336 AE 337 (466)
T ss_pred CC
Confidence 54
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=255.20 Aligned_cols=284 Identities=18% Similarity=0.228 Sum_probs=199.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+||+||||||+||+||..|++.|++|+|||+. .+||.+..... +..++.. .....
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~---------------i~~~pg~-------~~~~~ 59 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSE---------------VVNYPGI-------LNTTG 59 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccc---------------cccCCCC-------cCCCH
Confidence 5699999999999999999999999999999995 68887653200 0001110 12345
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~ 163 (433)
.++.++++..++++++. + .+++|+.++.+++.+.+.+.++ .+.+++||+|||+ .|+.|+++| .+.+..++.+
T Consensus 60 ~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa--~p~~~~ipG~~~~~~~~v~~~ 133 (555)
T TIGR03143 60 PELMQEMRQQAQDFGVK--F-LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGA--SPRKLGFPGEEEFTGRGVAYC 133 (555)
T ss_pred HHHHHHHHHHHHHcCCE--E-eccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCC--ccCCCCCCCHHHhCCceEEEE
Confidence 78889999889988873 4 4778999887666788887666 5899999999999 788899999 4566655555
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHH
Q psy2398 164 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQV 243 (433)
Q Consensus 164 ~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 243 (433)
...+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.+..+ . ...+.+
T Consensus 134 ~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~----------------~---------~~~~~~ 188 (555)
T TIGR03143 134 ATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCA----------------K---------LIAEKV 188 (555)
T ss_pred eecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccC----------------H---------HHHHHH
Confidence 555555567999999999999999999999999999999988642110 0 111111
Q ss_pred HHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCe----EE---ecCCcee----eccE---
Q psy2398 244 FKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI----VH---FVDDTHI----EVDT--- 309 (433)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~----v~---~~dG~~~----~~D~--- 309 (433)
. ...++ .+.....|.++.+.. +. ..+|+.. ++|.
T Consensus 189 ~-------~~~gV-------------------------~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~ 236 (555)
T TIGR03143 189 K-------NHPKI-------------------------EVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTF 236 (555)
T ss_pred H-------hCCCc-------------------------EEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccce
Confidence 1 00111 233344555654321 22 2356543 3666
Q ss_pred -EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHHh
Q psy2398 310 -IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQ 377 (433)
Q Consensus 310 -vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i~ 377 (433)
||+|+|++|+..+++. .+..+ ++++.++ ..+.++.|+||++||++.. ...+..|..||+.+|.++.
T Consensus 237 ~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 237 GVFVFVGYAPSSELFKG-VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred EEEEEeCCCCChhHHhh-hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 9999999999998874 34443 4556555 4567899999999999743 2345568888888777763
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=255.09 Aligned_cols=307 Identities=17% Similarity=0.140 Sum_probs=190.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 81 (433)
.++||+||||||+|+.+|..|++.|.+|+|+|+.+.+||+|.+.. |+|+..+..... ......+...... .
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~g----ciP~K~l~~~a~~~~~~~~~~~~g~~~~~-~ 77 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVG----CIPSKALLHVAKVIEEAKALAEHGIVFGE-P 77 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCC----cccHHHHHHHHHHHHHHhhhhhcCcccCC-C
Confidence 569999999999999999999999999999999878999987763 344322111000 0011111110000 0
Q ss_pred CCCHHHHHHHHHH-----------HHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCC-
Q psy2398 82 YPNHSMMLDYLRS-----------YAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVAR- 147 (433)
Q Consensus 82 ~~~~~~~~~~l~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~- 147 (433)
......+.++.+. ..+..++ .+..+ .+..+ +.+.+.|+..+| .++.||+||+|||+ .|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~a~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~ 150 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKV--TVVNG-LGKFT--GGNTLEVTGEDGKTTVIEFDNAIIAAGS--RPIQ 150 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEc--cCCEEEEecCCCceEEEEcCEEEEeCCC--CCCC
Confidence 1222333333322 2333344 23322 22222 245566766565 46899999999998 665
Q ss_pred CCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 148 YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 148 ~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
.|.+++. ...++.+.+...... .+++++|||+|.+|+|+|..+++.|.+||++.+.+. ++|.. +
T Consensus 151 ~p~~~~~-~~~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-il~~~-------------d 214 (471)
T PRK06467 151 LPFIPHD-DPRIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-VIPAA-------------D 214 (471)
T ss_pred CCCCCCC-CCcEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-CCCcC-------------C
Confidence 4445541 112344433333322 358999999999999999999999999999998764 23321 0
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCe--EEecCC-
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNI--VHFVDD- 302 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~--v~~~dG- 302 (433)
..+.. .+.+. +... + ++.....+++++ +.. +.+.++
T Consensus 215 ~~~~~-----~~~~~----l~~~-----v-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~~ 255 (471)
T PRK06467 215 KDIVK-----VFTKR----IKKQ-----F-------------------------NIMLETKVTAVEAKEDGIYVTMEGKK 255 (471)
T ss_pred HHHHH-----HHHHH----Hhhc-----e-------------------------EEEcCCEEEEEEEcCCEEEEEEEeCC
Confidence 11111 11111 1100 0 233334445443 222 344432
Q ss_pred ---ceeeccEEEEccCCCCCCCCCCc--cccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHH
Q psy2398 303 ---THIEVDTIIYATGYNRHFPFIDK--EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 303 ---~~~~~D~vi~atG~~~~~~~l~~--~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i 376 (433)
+++++|.||+|+|++|+.+++.. ..+..+ .+++.+++ .+.++.|+||++|||...+...+.|..||+.+|.+|
T Consensus 256 ~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~-~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i 334 (471)
T PRK06467 256 APAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDK-QCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVI 334 (471)
T ss_pred CcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCC-CcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHH
Confidence 35999999999999999987643 334443 34565554 457899999999999876678889999999999999
Q ss_pred hhhh
Q psy2398 377 QAFI 380 (433)
Q Consensus 377 ~g~~ 380 (433)
.|..
T Consensus 335 ~g~~ 338 (471)
T PRK06467 335 AGKK 338 (471)
T ss_pred cCCC
Confidence 8753
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=250.26 Aligned_cols=310 Identities=17% Similarity=0.166 Sum_probs=196.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC-C---cccCCCCCCCCC--CC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK-F---NTQVPDYPMPDN--YP 80 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~--~~ 80 (433)
|++|+|||||++|+.+|..++++|.+|+++|+. .+||+|.+.. |.|+..+.... . ......+..... ..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~g----ciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 75 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTD----CVPSKTLIATAEVRTELRRAAELGIRFIDDGE 75 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccC----CcchHHHHHHHHHHHHHHHHHhCCcccccCcc
Confidence 358999999999999999999999999999986 4899998763 33332211110 0 000001111000 00
Q ss_pred CCCCHHHHH-----------HHHHHHHHHcCCCcceEeCcEEEEEE--EeCCeEEEEEccCc--EEEeCEEEEccCCCCC
Q psy2398 81 VYPNHSMML-----------DYLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 81 ~~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~v~--~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~ 145 (433)
.......+. +.+...+++.++ ++.. .++..++ .+.+.+.|.+.+|. ++.||+||+|||+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~-g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs--~ 150 (466)
T PRK07845 76 ARVDLPAVNARVKALAAAQSADIRARLEREGV--RVIA-GRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA--S 150 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEE-EEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC--C
Confidence 011122222 233344445555 2433 3444433 33567777776665 6899999999999 6
Q ss_pred CCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 146 ARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 146 p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
|..|+.++.....++++....+... .+++++|||+|.+|+|+|..|++.+.+|+++.+.+. ++|...
T Consensus 151 p~~~p~~~~~~~~v~~~~~~~~~~~-~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~-~l~~~d----------- 217 (466)
T PRK07845 151 PRILPTAEPDGERILTWRQLYDLDE-LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR-VLPGED----------- 217 (466)
T ss_pred CCCCCCCCCCCceEEeehhhhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-CCCCCC-----------
Confidence 7766554421223444444433332 357999999999999999999999999999998764 223210
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC--eEEecC
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN--IVHFVD 301 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~--~v~~~d 301 (433)
. ...+.+.+.+. ..++ ++.....+.+++ +. .+.+.+
T Consensus 218 --~---------~~~~~l~~~L~----~~gV-------------------------~i~~~~~v~~v~~~~~~~~v~~~~ 257 (466)
T PRK07845 218 --A---------DAAEVLEEVFA----RRGM-------------------------TVLKRSRAESVERTGDGVVVTLTD 257 (466)
T ss_pred --H---------HHHHHHHHHHH----HCCc-------------------------EEEcCCEEEEEEEeCCEEEEEECC
Confidence 0 11111111111 1111 222334455553 22 355678
Q ss_pred CceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 302 DTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 302 G~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
|+++++|.||+|+|++|+...+ +...+..+ .+++.+++. +.++.||||++||+.....+.+.|..||+.++.++.|
T Consensus 258 g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 258 GRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRV-SRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred CcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCC-cccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcC
Confidence 9999999999999999998864 44445543 455666654 4789999999999998777889999999999999987
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
..
T Consensus 337 ~~ 338 (466)
T PRK07845 337 EA 338 (466)
T ss_pred CC
Confidence 54
|
|
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=225.08 Aligned_cols=315 Identities=19% Similarity=0.230 Sum_probs=217.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC---cccCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF---NTQVPDYPMPDNYP 80 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 80 (433)
..+.+|.+|||||.+|+++|++.+++|.++.++|..-.+||+|.... ++-+...++.+.. +.+-.++.++.+..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~G---CVPKKvm~~~a~~~~~~~da~~yG~~~~~~ 93 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVG---CVPKKVMWYAADYSEEMEDAKDYGFPINEE 93 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeec---cccceeEEehhhhhHHhhhhhhcCCccccc
Confidence 34579999999999999999999999999999999878999999873 2334445554433 22333444444322
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEe-----CCeEEEEEccCcE--EEeCEEEEccCCCCCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQY-----EDIWEVELSNGKK--KKYDFIAVCNGAQRVARYPNYS 152 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~-----~~~~~v~~~~g~~--~~~d~vIvAtG~~s~p~~p~i~ 152 (433)
.--.+..+.+--.+|..++ ++.++..-+..|.-++-. ++...|...++.+ +++++++||||. .|.+|.||
T Consensus 94 ~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg--~p~~PnIp 171 (478)
T KOG0405|consen 94 GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGG--RPIIPNIP 171 (478)
T ss_pred cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCC--ccCCCCCC
Confidence 2223344444444444443 233333445555555532 5667777777643 789999999999 99999999
Q ss_pred CCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 153 GYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 153 g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
| ...-+.|..+.+.+++ .|+++|||+|++|+|+|.-++..|.+++++.|....+ .
T Consensus 172 G--~E~gidSDgff~Lee~-Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-R--------------------- 226 (478)
T KOG0405|consen 172 G--AELGIDSDGFFDLEEQ-PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-R--------------------- 226 (478)
T ss_pred c--hhhccccccccchhhc-CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-c---------------------
Confidence 9 2233567777777776 6789999999999999999999999999999986411 1
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceee----eC-CeEEecCCceeec
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL----NG-NIVHFVDDTHIEV 307 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~----~~-~~v~~~dG~~~~~ 307 (433)
.+.+.+...+...++..++ +++....++++ ++ ..+....|+...+
T Consensus 227 -----~FD~~i~~~v~~~~~~~gi-------------------------nvh~~s~~~~v~K~~~g~~~~i~~~~~i~~v 276 (478)
T KOG0405|consen 227 -----GFDEMISDLVTEHLEGRGI-------------------------NVHKNSSVTKVIKTDDGLELVITSHGTIEDV 276 (478)
T ss_pred -----chhHHHHHHHHHHhhhcce-------------------------eecccccceeeeecCCCceEEEEeccccccc
Confidence 1222222122222222222 23323333333 22 2344556666779
Q ss_pred cEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 308 DTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 308 D~vi~atG~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
|.++||||++|+..-|..+.+ +.+.++....+.++.|+.|+||++||++.-..+.+.|.+.++.+|..+.|
T Consensus 277 d~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 277 DTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred cEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 999999999999988776544 44556666667788999999999999998777888999999999999887
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=254.96 Aligned_cols=306 Identities=17% Similarity=0.220 Sum_probs=190.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc----CCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 81 (433)
..+||+|||||++|++||..+++.|.+|+|||+. .+||+|.+.. |.|+..+........ ...+..... .
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~G----CiPsK~l~~~a~~~~~~~~~~~~Gi~~~--~ 119 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVG----CVPKKIMFNAASIHDILENSRHYGFDTQ--F 119 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccC----CCCCchhhhhcccHHHHHHHHhcCCCcc--C
Confidence 4689999999999999999999999999999986 6999998873 344443332222111 111111100 0
Q ss_pred CCCHHHHH-----------HHHHHHHHHcCCCcceEeCc-------EEE--EEE--------EeCCeEEE------EEcc
Q psy2398 82 YPNHSMML-----------DYLRSYAKKFDVYNHSIFNT-------EVI--NLE--------QYEDIWEV------ELSN 127 (433)
Q Consensus 82 ~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~-------~V~--~v~--------~~~~~~~v------~~~~ 127 (433)
-.....+. +.+.+..++.++. +..++ +|. .++ .++++.+| ...+
T Consensus 120 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (561)
T PTZ00058 120 SFNLPLLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDD 197 (561)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCC
Confidence 11112222 2222333334442 22221 110 000 01222334 2345
Q ss_pred CcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 128 GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 128 g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+..++||+||+|||+ .|..|+++|. ..++++..+..... +++|+|||+|.+|+|+|..+.+.|.+||++.+++.
T Consensus 198 g~~i~ad~lVIATGS--~P~~P~IpG~--~~v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 198 GQVIEGKNILIAVGN--KPIFPDVKGK--EFTISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CcEEECCEEEEecCC--CCCCCCCCCc--eeEEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 667999999999998 8899999982 12344433333222 78999999999999999999999999999998764
Q ss_pred eeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecC
Q psy2398 208 HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD 287 (433)
Q Consensus 208 ~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 287 (433)
++|... . ...+.+.+.+. ..++ ++....
T Consensus 272 -il~~~d-------------~---------~i~~~l~~~L~----~~GV-------------------------~i~~~~ 299 (561)
T PTZ00058 272 -LLRKFD-------------E---------TIINELENDMK----KNNI-------------------------NIITHA 299 (561)
T ss_pred -ccccCC-------------H---------HHHHHHHHHHH----HCCC-------------------------EEEeCC
Confidence 223210 1 11111111111 1111 233344
Q ss_pred CceeeeCC---e--EEecCC-ceeeccEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEccccc--
Q psy2398 288 DIKNLNGN---I--VHFVDD-THIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNA-- 357 (433)
Q Consensus 288 ~v~~~~~~---~--v~~~dG-~~~~~D~vi~atG~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~i~~iG~~~~-- 357 (433)
.+.++++. . +.+.++ +++++|.|++|+|++|+..+|..+.. ..+.+.+.++.. +.|+.|+||++|||..
T Consensus 300 ~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~-lqTs~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 300 NVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDN-QRTSVKHIYAVGDCCMVK 378 (561)
T ss_pred EEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcC-CccCCCCEEEeEeccCcc
Confidence 45555421 2 334444 46999999999999999998865433 224455666554 5789999999999987
Q ss_pred --------------------------------cCChhhHHHHHHHHHHHHHhhh
Q psy2398 358 --------------------------------AAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 358 --------------------------------~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
...+.+.|..||+.+|.++.|.
T Consensus 379 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 379 KNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 3566788999999999999885
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=254.69 Aligned_cols=307 Identities=20% Similarity=0.211 Sum_probs=189.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----CcccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 82 (433)
++||+||||||+|+++|..|++.|.+|+|||+ ..+||+|.+.. |.|+..+.... ....++.+..... ...
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~g----c~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~ 76 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVG----CIPSKALIAAAEAFHEAKHAEEFGIHAD-GPK 76 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceeccc----eeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCc
Confidence 48999999999999999999999999999999 67999998753 34432211111 0111111111111 123
Q ss_pred CCHHHHHHHHHHHHHHcCCCc--ceEeCcEEEEEEE---eCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCC---
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYN--HSIFNTEVINLEQ---YEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--- 154 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~--~i~~~~~V~~v~~---~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~--- 154 (433)
....++.++++....++...- ...-...|.-+.. ..+.+.+.+ ++.++.||+||+|||+. .|++||.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~----~p~ipg~~~~ 151 (460)
T PRK06292 77 IDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSR----VPPIPGVWLI 151 (460)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCC----CCCCCCCccc
Confidence 456777777776666542210 0000111211111 012223444 55679999999999984 4455551
Q ss_pred CCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCch
Q psy2398 155 FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 234 (433)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 234 (433)
....++++.+.... ...+++++|||+|.+|+|+|..|.+.+.+|+++.|.+. ++|.. +.
T Consensus 152 ~~~~~~~~~~~~~~-~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~~-------------d~------ 210 (460)
T PRK06292 152 LGDRLLTSDDAFEL-DKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR-ILPLE-------------DP------ 210 (460)
T ss_pred CCCcEECchHHhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-cCcch-------------hH------
Confidence 12233333332222 23478999999999999999999999999999998764 22211 01
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC---eEE--ecCC--ceeec
Q psy2398 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN---IVH--FVDD--THIEV 307 (433)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~---~v~--~~dG--~~~~~ 307 (433)
.+.+.+.+.+... + ++.....+.++++. .+. +.+| .++++
T Consensus 211 ---~~~~~~~~~l~~~-----I-------------------------~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~ 257 (460)
T PRK06292 211 ---EVSKQAQKILSKE-----F-------------------------KIKLGAKVTSVEKSGDEKVEELEKGGKTETIEA 257 (460)
T ss_pred ---HHHHHHHHHHhhc-----c-------------------------EEEcCCEEEEEEEcCCceEEEEEcCCceEEEEe
Confidence 1111111111100 0 23334455555421 344 2344 46899
Q ss_pred cEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 308 DTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 308 D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
|.||+|+|++|+.++|. ...+..+ .+.+.+++. +.++.|+||++|||...+...+.|..||+.+|.+|.+.
T Consensus 258 D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~-~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 258 DYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEH-TQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred CEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCC-cccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 99999999999998643 3344443 345556554 47799999999999976677889999999999999874
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=253.65 Aligned_cols=312 Identities=16% Similarity=0.157 Sum_probs=189.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccC--------CCCCCcccCCCCCCccccceEeecCCCc-c---cCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEME--------SDLGGVWNSQASCGRVYPSLHLISPKFN-T---QVPD 72 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~--------~~~Gg~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ 72 (433)
+.+||+||||||+|..+|..++++ |.+|++||+. ..+||+|.+.. |.|+..+..+... . ....
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~G----CiPsK~l~~~a~~~~~~~~~~~ 77 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVG----CVPKKLMVTGAQYMDTLRESAG 77 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcC----CccHHHHHHHHHHHHHHHHhhc
Confidence 569999999999999999999996 9999999973 46999999874 3443332221111 0 0111
Q ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHHHc--CCCcceEeCcEEEEEEE-----eCCeEEEEEcc------CcEEEeCEEEE
Q psy2398 73 YPMPDN-YPVYPNHSMMLDYLRSYAKKF--DVYNHSIFNTEVINLEQ-----YEDIWEVELSN------GKKKKYDFIAV 138 (433)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~--~~~~~i~~~~~V~~v~~-----~~~~~~v~~~~------g~~~~~d~vIv 138 (433)
+..... ...-.....+.++.+...+.. +....+.-...|+-+.- +.+...|.... ...+.||+||+
T Consensus 78 ~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lII 157 (486)
T TIGR01423 78 FGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILL 157 (486)
T ss_pred cCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEE
Confidence 111000 000122333333333322221 00000000012222221 13434443211 23689999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhcc---CCcEEEEEecCceeecccCC
Q psy2398 139 CNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFID 215 (433)
Q Consensus 139 AtG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~---~~~V~~~~r~~~~~~p~~~~ 215 (433)
|||+ .|..|+++|. ..+..+.+..... ..+++++|||+|.+|+|+|..+... +.+|+++.+.+.. +|..
T Consensus 158 ATGs--~p~~p~i~G~--~~~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i-l~~~-- 229 (486)
T TIGR01423 158 ATGS--WPQMLGIPGI--EHCISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI-LRGF-- 229 (486)
T ss_pred ecCC--CCCCCCCCCh--hheechhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc-cccc--
Confidence 9998 7899999981 1122222222222 2368999999999999999877654 8999999987642 2321
Q ss_pred CCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-
Q psy2398 216 GKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG- 294 (433)
Q Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~- 294 (433)
+..+.. .+.+ .+. ..++ ++.....++++..
T Consensus 230 -----------d~~~~~-----~l~~----~L~----~~GI-------------------------~i~~~~~v~~i~~~ 260 (486)
T TIGR01423 230 -----------DSTLRK-----ELTK----QLR----ANGI-------------------------NIMTNENPAKVTLN 260 (486)
T ss_pred -----------CHHHHH-----HHHH----HHH----HcCC-------------------------EEEcCCEEEEEEEc
Confidence 111111 1111 111 1111 2333445556642
Q ss_pred ----CeEEecCCceeeccEEEEccCCCCCCCCCCc--ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHH
Q psy2398 295 ----NIVHFVDDTHIEVDTIIYATGYNRHFPFIDK--EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRL 367 (433)
Q Consensus 295 ----~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~ 367 (433)
..+.+.+|+++++|.||+|||++|+..++.. ..+.. +.+.+.+++.+ .|+.|+||++|||...+.+.+.|..
T Consensus 261 ~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l-~Ts~~~IyA~GDv~~~~~l~~~A~~ 339 (486)
T TIGR01423 261 ADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFS-RTNVPNIYAIGDVTDRVMLTPVAIN 339 (486)
T ss_pred CCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCC-cCCCCCEEEeeecCCCcccHHHHHH
Confidence 2466778889999999999999999987643 33444 33556666554 6899999999999987778889999
Q ss_pred HHHHHHHHHhhh
Q psy2398 368 QGQFIRSYIQAF 379 (433)
Q Consensus 368 qa~~~a~~i~g~ 379 (433)
|++.++.+|.|.
T Consensus 340 qG~~aa~ni~g~ 351 (486)
T TIGR01423 340 EGAAFVDTVFGN 351 (486)
T ss_pred HHHHHHHHHhCC
Confidence 999999999875
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=254.90 Aligned_cols=303 Identities=17% Similarity=0.160 Sum_probs=187.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCC---CCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVP---DYPMPDNYPVYPN 84 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 84 (433)
+||+||||||+|+++|..|+++|.+|+|+|+.. +||+|.+.. |.|+..+........+. .+...... ..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~g----ciPsk~l~~~~~~~~~~~~~~~g~~~~~-~~~~ 74 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVG----CVPSKMLLRAAEVAHYARKPPFGGLAAT-VAVD 74 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeec----EEccHHHHHHHHHHHHhhccCcccccCC-CccC
Confidence 699999999999999999999999999999865 999987652 34433322111111100 01000000 0111
Q ss_pred H-------HHHHHHH-----HHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEccCCCCCCCCCCC
Q psy2398 85 H-------SMMLDYL-----RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 85 ~-------~~~~~~l-----~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAtG~~s~p~~p~i 151 (433)
. +++..++ ....+++++. +..+ ++..+ +..+|++.++. .+.+|+||+|||+ .|..|++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~~----~~~~v~v~~g~~~~~~~~lIiATGs--~p~~p~i 145 (463)
T TIGR02053 75 FGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRG-RARFK----DPKTVKVDLGREVRGAKRFLIATGA--RPAIPPI 145 (463)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEE-EEEEc----cCCEEEEcCCeEEEEeCEEEEcCCC--CCCCCCC
Confidence 2 2222222 2233444542 3222 22221 22355555543 5789999999998 8899999
Q ss_pred CCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhc
Q psy2398 152 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 231 (433)
Q Consensus 152 ~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 231 (433)
+|.-...++++.+...... .+++++|||+|.+|+|+|..|.+.+.+|+++.+.+. ++|... .
T Consensus 146 ~G~~~~~~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~~d-------------~--- 207 (463)
T TIGR02053 146 PGLKEAGYLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR-LLPREE-------------P--- 207 (463)
T ss_pred CCcccCceECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-CCCccC-------------H---
Confidence 9821112444444333322 358999999999999999999999999999998864 333210 0
Q ss_pred CchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--eEEec---CCce
Q psy2398 232 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHFV---DDTH 304 (433)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~v~~~---dG~~ 304 (433)
...+.+.+.+. ..++ ++.....|+++.. . .+.+. ++.+
T Consensus 208 ------~~~~~l~~~l~----~~gV-------------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~ 252 (463)
T TIGR02053 208 ------EISAAVEEALA----EEGI-------------------------EVVTSAQVKAVSVRGGGKIITVEKPGGQGE 252 (463)
T ss_pred ------HHHHHHHHHHH----HcCC-------------------------EEEcCcEEEEEEEcCCEEEEEEEeCCCceE
Confidence 11111111111 1111 2223344555542 1 23332 2357
Q ss_pred eeccEEEEccCCCCCCCC--CCcccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 305 IEVDTIIYATGYNRHFPF--IDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~--l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+++|.||+|+|++|+.+. ++...+.. +.+.+.+++. +.++.|+||++|||...+...+.|..||+.+|.++.+.
T Consensus 253 i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 253 VEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET-LRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred EEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC-ccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 999999999999999884 44444444 3455666654 57899999999999987777889999999999999875
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=248.56 Aligned_cols=298 Identities=17% Similarity=0.206 Sum_probs=191.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-CCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC-CCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-DLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV-YPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 84 (433)
.+||+||||||+|+++|..|+++|.+|+|||+.+ .+||+|.... |.+...+...... ...+.. ...
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~g----cip~k~l~~~~~~--------~~~~~~~~~~ 70 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIG----CIPTKTLVHDAQQ--------HTDFVRAIQR 70 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeecc----ccchHHHHHHhcc--------CCCHHHHHHH
Confidence 4899999999999999999999999999999976 4899987642 2332211110000 000000 001
Q ss_pred HHHHHHHHHH-----HHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEccCCCCCCCCCCCCC-C-CC
Q psy2398 85 HSMMLDYLRS-----YAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSG-Y-FS 156 (433)
Q Consensus 85 ~~~~~~~l~~-----~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAtG~~s~p~~p~i~g-~-~~ 156 (433)
...+.++++. ..+..++ .+. ..++..++ .+.+.|.+.++. ++.||+||+|||+ .|..|+++| . +.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~gv--~~~-~g~~~~i~--~~~~~v~~~~g~~~~~~d~lviATGs--~p~~p~i~G~~~~~ 143 (441)
T PRK08010 71 KNEVVNFLRNKNFHNLADMPNI--DVI-DGQAEFIN--NHSLRVHRPEGNLEIHGEKIFINTGA--QTVVPPIPGITTTP 143 (441)
T ss_pred HHHHHHHHHHhHHHHHhhcCCc--EEE-EEEEEEec--CCEEEEEeCCCeEEEEeCEEEEcCCC--cCCCCCCCCccCCC
Confidence 1222233322 1111133 122 22344443 466778777764 6899999999999 888899998 2 33
Q ss_pred CceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHH
Q psy2398 157 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 236 (433)
Q Consensus 157 g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (433)
+ ++++....... ..+++++|||+|.+|+|+|..|.+.+.+|+++.|.+. ++|... .
T Consensus 144 ~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~~~-------------~-------- 199 (441)
T PRK08010 144 G-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASL-FLPRED-------------R-------- 199 (441)
T ss_pred C-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC-CCCCcC-------------H--------
Confidence 3 44444443332 3467999999999999999999999999999998764 333210 0
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeEE--ecCCceeeccEEEE
Q psy2398 237 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIVH--FVDDTHIEVDTIIY 312 (433)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v~--~~dG~~~~~D~vi~ 312 (433)
.+.+.+.+.+. ..++ ++.....+.+++. ..+. .++| ++++|.|++
T Consensus 200 -~~~~~l~~~l~----~~gV-------------------------~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~ 248 (441)
T PRK08010 200 -DIADNIATILR----DQGV-------------------------DIILNAHVERISHHENQVQVHSEHA-QLAVDALLI 248 (441)
T ss_pred -HHHHHHHHHHH----hCCC-------------------------EEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEE
Confidence 11111111111 1111 2333445666642 2333 3344 589999999
Q ss_pred ccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 313 ATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 313 atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
|+|.+|+..++. ...+..+ .+++.++++ +.++.|+||++|||+......+.+..|++.++.++.|.
T Consensus 249 a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 249 ASGRQPATASLHPENAGIAVNERGAIVVDKY-LHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred eecCCcCCCCcCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 999999988754 2334443 456666655 47889999999999987778889999999999999874
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=248.99 Aligned_cols=290 Identities=19% Similarity=0.232 Sum_probs=194.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|+|||||++|+.+|+.|...+.+|++||+++.. . |..+. +....+....
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~--~----------~~~~l---------------~~~~~g~~~~ 61 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM--L----------FTPLL---------------PQTTTGTLEF 61 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc--c----------hhhhH---------------HHhcccCCCh
Confidence 4679999999999999999998777899999987643 1 11000 0000111223
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE--------ccCcEEEeCEEEEccCCCCCCCCCCCCC--CC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--------SNGKKKKYDFIAVCNGAQRVARYPNYSG--YF 155 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~--------~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~ 155 (433)
.++...++..+..++. .+...+|+.|+.+++.+.+.. .++.++.||+||+|||+ .+..|++|| +.
T Consensus 62 ~~~~~~~~~~~~~~~~---~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs--~~~~~~ipG~~e~ 136 (424)
T PTZ00318 62 RSICEPVRPALAKLPN---RYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA--RPNTFNIPGVEER 136 (424)
T ss_pred HHhHHHHHHHhccCCe---EEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCc--ccCCCCCCCHHHc
Confidence 3444445555555554 244678999998777666632 34567999999999999 788888888 11
Q ss_pred --CC-ceeccCCCC---------------CCC-CCCCCeEEEEcCCCCHHHHHHHHhcc--------------CCcEEEE
Q psy2398 156 --SG-EILHSMDYK---------------SPD-QIRNKRVLVVGAGNSGCDIAVDASHH--------------SEKVYHS 202 (433)
Q Consensus 156 --~g-~~~~~~~~~---------------~~~-~~~~~~v~VvG~G~sg~d~a~~l~~~--------------~~~V~~~ 202 (433)
.. .+-+...++ ..+ ....++++|||+|.+|+|+|.+|+.. +.+|+++
T Consensus 137 ~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv 216 (424)
T PTZ00318 137 AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVL 216 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEE
Confidence 11 010100000 000 11235899999999999999999862 6789999
Q ss_pred EecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCC
Q psy2398 203 TRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGD 282 (433)
Q Consensus 203 ~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (433)
++.+.. +|.. +..+.+ .+.+. +. ..++ +
T Consensus 217 ~~~~~l-l~~~-------------~~~~~~-----~~~~~----L~----~~gV-------------------------~ 244 (424)
T PTZ00318 217 EAGSEV-LGSF-------------DQALRK-----YGQRR----LR----RLGV-------------------------D 244 (424)
T ss_pred cCCCcc-cccC-------------CHHHHH-----HHHHH----HH----HCCC-------------------------E
Confidence 987642 2211 111111 11111 11 1112 3
Q ss_pred eeecCCceeeeCCeEEecCCceeeccEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc---
Q psy2398 283 ILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA--- 358 (433)
Q Consensus 283 v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~--- 358 (433)
+.....|.++.+..|.++||+++++|.+|||+|.+|+ +++....+.. +.|++.+++.+..+++||||++|||+..
T Consensus 245 v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~ 323 (424)
T PTZ00318 245 IRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEER 323 (424)
T ss_pred EEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCC
Confidence 4446678888888999999999999999999999998 6766544444 3467888877766899999999999963
Q ss_pred --CChhhHHHHHHHHHHHHHhhhh
Q psy2398 359 --AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 359 --~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+.....|..||+.+|++|.+..
T Consensus 324 ~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 324 PLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHh
Confidence 3466789999999999997654
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=258.38 Aligned_cols=308 Identities=15% Similarity=0.133 Sum_probs=191.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCCC-CCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVPD-YPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~ 80 (433)
..+||+||||||+|+++|..|++.|.+|+|||+. .+||+|.+.. |+|+..+..+..+. ..+. ...+...+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~g----ciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~ 171 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVG----CVPSKIMIRAAHIAHLRRESPFDGGIAATVP 171 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccC----ccccHHHHHHHHHHHHHhcccccCCccCCCC
Confidence 4589999999999999999999999999999997 7999998763 45544322111100 0000 01111111
Q ss_pred CCCCHHHHHHHHHHHHHHcC-------CCc--ceEe-CcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFD-------VYN--HSIF-NTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~-------~~~--~i~~-~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p~~ 148 (433)
......+.++.+.....+. +.. .+.+ ..++..+ +.+.+.|++.++. .+.||+||+|||+ .|..
T Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~ 246 (561)
T PRK13748 172 -TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFK--DDQTLIVRLNDGGERVVAFDRCLIATGA--SPAV 246 (561)
T ss_pred -ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCC--CCCC
Confidence 1233444444333332210 000 1111 1223322 2566778776653 5899999999998 8899
Q ss_pred CCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
|+++|......+++.+.... ...+++++|||+|.+|+|+|..|++.+.+|+++.|.. ++++.. .
T Consensus 247 p~i~g~~~~~~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d-------------~ 310 (561)
T PRK13748 247 PPIPGLKETPYWTSTEALVS-DTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFRED-------------P 310 (561)
T ss_pred CCCCCCCccceEccHHHhhc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccC-------------H
Confidence 99998211122222221111 2346899999999999999999999999999999853 333210 0
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCe--EEecCCce
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNI--VHFVDDTH 304 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~--v~~~dG~~ 304 (433)
.+.+.+.+.+. ..++ ++.....++++. +.. +.+.++ +
T Consensus 311 ---------~~~~~l~~~l~----~~gI-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~-~ 351 (561)
T PRK13748 311 ---------AIGEAVTAAFR----AEGI-------------------------EVLEHTQASQVAHVDGEFVLTTGHG-E 351 (561)
T ss_pred ---------HHHHHHHHHHH----HCCC-------------------------EEEcCCEEEEEEecCCEEEEEecCC-e
Confidence 11111111111 1111 222334455553 222 233344 6
Q ss_pred eeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 305 IEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+++|.||+|+|++|+..++ +...+..+ .+.+.+++ .+.++.||||++|||+..+...+.|..||+.++.+|.|.
T Consensus 352 i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~-~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 352 LRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQ-GMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred EEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECC-CcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 9999999999999999875 33445443 34565555 457899999999999977777888999999999999875
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=249.84 Aligned_cols=307 Identities=12% Similarity=0.087 Sum_probs=192.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCc-cc---CCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFN-TQ---VPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~ 83 (433)
+|++||||||+|..+|.. ..|.+|+++|+. .+||+|.+.. |.|+..+..+... .. .+.+...... .-.
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~G----CiPsK~l~~~a~~~~~~~~~~~~g~~~~~-~~~ 73 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNVG----CIPTKMFVYAADVARTIREAARLGVDAEL-DGV 73 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCcC----cchhHHHHHHHHHHHHHHHHHhCCccCCC-CcC
Confidence 899999999999998876 459999999984 6999998873 3443322211111 00 0111110000 112
Q ss_pred CHHHHHHHHHHHHHHcCCC-cceE-e-CcEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVY-NHSI-F-NTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSG 157 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~-~~i~-~-~~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g 157 (433)
...++.++.+...+++.-. .... + ...|+-+... .+..+|++.+++.+.||+||+|||+ .|..|+++|....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs--~p~~p~i~g~~~~ 151 (451)
T PRK07846 74 RWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGS--RPVIPPVIADSGV 151 (451)
T ss_pred CHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC--CCCCCCCCCcCCc
Confidence 4455566655554443110 0011 1 1112222111 2334666666778999999999998 8899999882111
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
.+..+.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.|++.. +|.. +..
T Consensus 152 ~~~~~~~~~~l~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-l~~~-------------d~~-------- 208 (451)
T PRK07846 152 RYHTSDTIMRLP-ELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL-LRHL-------------DDD-------- 208 (451)
T ss_pred cEEchHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc-cccc-------------CHH--------
Confidence 222222222222 23689999999999999999999999999999988642 2211 011
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--eEEecCCceeeccEEEEc
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHFVDDTHIEVDTIIYA 313 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~v~~~dG~~~~~D~vi~a 313 (433)
..+.+.+... .++ ++.....+.++++ . .+.+.+|+++++|.||+|
T Consensus 209 -~~~~l~~l~~-----~~v-------------------------~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a 257 (451)
T PRK07846 209 -ISERFTELAS-----KRW-------------------------DVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVA 257 (451)
T ss_pred -HHHHHHHHHh-----cCe-------------------------EEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEE
Confidence 1111110000 001 2333445555542 2 356678889999999999
Q ss_pred cCCCCCCCCCCc--ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 314 TGYNRHFPFIDK--EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 314 tG~~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
||++|+.++++. ..+.. +.+.+.++++ +.++.|+||++||+.....+.+.|..||+.++++|.+.
T Consensus 258 ~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~-~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 258 TGRVPNGDLLDAAAAGVDVDEDGRVVVDEY-QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred ECCccCccccCchhcCceECCCCcEeECCC-cccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 999999998753 34444 3455666655 46899999999999987778889999999999999865
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=249.00 Aligned_cols=305 Identities=17% Similarity=0.123 Sum_probs=185.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc-c-----CCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT-Q-----VPDYPMPDNYP 80 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~ 80 (433)
++||+||||||+|++||..+++.|.+|+|+|+...+||+|.+.. |.|+..+....... . +..+.... ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~g----ciPsK~l~~~~~~~~~~~~~~~~~~gi~~-~~ 77 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVG----CMPSKALLHASELYEAASGGEFAHLGIEV-KP 77 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCc----ccccHHHHHHhHHHHHHhhhhhhhcCccc-cC
Confidence 38999999999999999999999999999998778999987763 33433222111111 0 01111000 00
Q ss_pred CCCCHHHHHHHHHH-----------HHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRS-----------YAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 81 ~~~~~~~~~~~l~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p~ 147 (433)
-....++.+.... ..+..++ .+..+. . .+. +.+.+.|...++. ++.||+||+|||+ .|.
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-a-~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs--~p~ 149 (466)
T PRK06115 78 -TLNLAQMMKQKDESVEALTKGVEFLFRKNKV--DWIKGW-G-RLD-GVGKVVVKAEDGSETQLEAKDIVIATGS--EPT 149 (466)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-E-EEc-cCCEEEEEcCCCceEEEEeCEEEEeCCC--CCC
Confidence 1112222222211 1222222 111111 1 111 1455666665653 5899999999998 453
Q ss_pred CCCCCC-CCCC-ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 148 YPNYSG-YFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 148 ~p~i~g-~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
++|| .+.+ .++++.+..... ..+++++|||+|.+|+|+|..+.+.+.+|+++.+.+. ++|.. +
T Consensus 150 --~ipg~~~~~~~~~~~~~~~~~~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~-il~~~----d------- 214 (466)
T PRK06115 150 --PLPGVTIDNQRIIDSTGALSLP-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR-ICPGT----D------- 214 (466)
T ss_pred --CCCCCCCCCCeEECHHHHhCCc-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC-CCCCC----C-------
Confidence 3455 2333 244443333322 2478999999999999999999999999999998764 23321 0
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeE--Eec-
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIV--HFV- 300 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v--~~~- 300 (433)
. ...+.+.+.+. ..++ ++.....++++.+ ..+ .+.
T Consensus 215 --~---------~~~~~l~~~l~----~~gV-------------------------~i~~~~~V~~i~~~~~~v~v~~~~ 254 (466)
T PRK06115 215 --T---------ETAKTLQKALT----KQGM-------------------------KFKLGSKVTGATAGADGVSLTLEP 254 (466)
T ss_pred --H---------HHHHHHHHHHH----hcCC-------------------------EEEECcEEEEEEEcCCeEEEEEEE
Confidence 1 11111111111 1111 3333445666642 232 332
Q ss_pred --C--CceeeccEEEEccCCCCCCCCCCcc--cccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHH
Q psy2398 301 --D--DTHIEVDTIIYATGYNRHFPFIDKE--KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 374 (433)
Q Consensus 301 --d--G~~~~~D~vi~atG~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~ 374 (433)
+ ++++++|.||+|+|++|+...|..+ .+..+..+..++ ..+.|+.|+||++|||+..+.+.+.|..||+.+|+
T Consensus 255 ~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~ 333 (466)
T PRK06115 255 AAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLAN-DHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIE 333 (466)
T ss_pred cCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEEC-CCeecCCCCEEEeeecCCCcccHHHHHHHHHHHHH
Confidence 2 3468999999999999998876432 334433344444 45688999999999999877788999999999999
Q ss_pred HHhhhh
Q psy2398 375 YIQAFI 380 (433)
Q Consensus 375 ~i~g~~ 380 (433)
+|.+..
T Consensus 334 ~i~~~~ 339 (466)
T PRK06115 334 RIAGKA 339 (466)
T ss_pred HHcCCC
Confidence 998864
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=251.42 Aligned_cols=309 Identities=19% Similarity=0.181 Sum_probs=192.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc----CCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 81 (433)
..+||+||||||+|+++|..|++.|.+|+++|+. .+||+|.... |.|+..+......+. ...+.......
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~- 76 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKG----CIPSKALLHSAEVFQTAKKASPFGISVSGP- 76 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCC----cCchHHHHHHHHHHHHHHHHHhcCccCCCC-
Confidence 5699999999999999999999999999999995 7999998763 344332221111000 00010000000
Q ss_pred CCCH-------HHHHHHH----HHHHHHcCCCcceEeCcEEEEEEEe-----CCeEEEEEccC--cEEEeCEEEEccCCC
Q psy2398 82 YPNH-------SMMLDYL----RSYAKKFDVYNHSIFNTEVINLEQY-----EDIWEVELSNG--KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 82 ~~~~-------~~~~~~l----~~~~~~~~~~~~i~~~~~V~~v~~~-----~~~~~v~~~~g--~~~~~d~vIvAtG~~ 143 (433)
.... .++.+++ ....++.++ ++.. .++..++.+ ++.+.|.+.+| .++.||+||+|||+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~-g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs- 152 (472)
T PRK05976 77 ALDFAKVQERKDGIVDRLTKGVAALLKKGKI--DVFH-GIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS- 152 (472)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC-
Confidence 1111 2222222 233344455 2333 345555442 33778887776 46899999999998
Q ss_pred CCCCCCCCCCCCCCc-eeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHH
Q psy2398 144 RVARYPNYSGYFSGE-ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 144 s~p~~p~i~g~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
.|..|+.. .+.+. ++++.+...... .+++++|||+|.+|+|+|..|++.+.+|+++.|.+. ++|...
T Consensus 153 -~p~~~p~~-~~~~~~~~~~~~~~~~~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~-il~~~~-------- 220 (472)
T PRK05976 153 -RPVELPGL-PFDGEYVISSDEALSLET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR-ILPTED-------- 220 (472)
T ss_pred -CCCCCCCC-CCCCceEEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc-cCCcCC--------
Confidence 66543211 12222 344443333222 368999999999999999999999999999998864 333210
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee---CCeE--
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN---GNIV-- 297 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~---~~~v-- 297 (433)
. .+.+.+.+.+. ..++ ++.....+.++. ...+
T Consensus 221 -----~---------~~~~~l~~~l~----~~gI-------------------------~i~~~~~v~~i~~~~~~~~~~ 257 (472)
T PRK05976 221 -----A---------ELSKEVARLLK----KLGV-------------------------RVVTGAKVLGLTLKKDGGVLI 257 (472)
T ss_pred -----H---------HHHHHHHHHHH----hcCC-------------------------EEEeCcEEEEEEEecCCCEEE
Confidence 1 11111111111 1111 233344455554 2222
Q ss_pred -EecCCc--eeeccEEEEccCCCCCCCCCCccc--ccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHH
Q psy2398 298 -HFVDDT--HIEVDTIIYATGYNRHFPFIDKEK--LEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 372 (433)
Q Consensus 298 -~~~dG~--~~~~D~vi~atG~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~ 372 (433)
.+.+|+ ++++|.||+|+|.+|+.+.+..+. +....+.+.+++. +.++.|+||++||+...+.....|..||+.+
T Consensus 258 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~-l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~a 336 (472)
T PRK05976 258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDF-CQTKERHIYAIGDVIGEPQLAHVAMAEGEMA 336 (472)
T ss_pred EEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCC-cccCCCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 235674 589999999999999988764332 2234455666554 4688999999999987667788999999999
Q ss_pred HHHHhhhh
Q psy2398 373 RSYIQAFI 380 (433)
Q Consensus 373 a~~i~g~~ 380 (433)
+.+|.|..
T Consensus 337 a~~i~g~~ 344 (472)
T PRK05976 337 AEHIAGKK 344 (472)
T ss_pred HHHHcCCC
Confidence 99998864
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=254.98 Aligned_cols=307 Identities=18% Similarity=0.145 Sum_probs=189.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC--------CCCCcccCCCCCCccccceEeecCCCccc-C----CC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES--------DLGGVWNSQASCGRVYPSLHLISPKFNTQ-V----PD 72 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~--------~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~ 72 (433)
.++||+||||||+|++||..|+++|.+|+|+|+.. .+||+|.+.. |+|+..+..+..+.. + ..
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~g----ciPsK~l~~~a~~~~~~~~~~~~ 79 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVG----CVPKKLMHYAANIGSIFHHDSQM 79 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecccc----ccchHHHHHHHHHHHHHHhHHhc
Confidence 46899999999999999999999999999999631 4899987662 455432211100000 0 01
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCc---EEEEEEE---eCCeEEEEEcc---CcEEEeCEEEEccCCC
Q psy2398 73 YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNT---EVINLEQ---YEDIWEVELSN---GKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~---~V~~v~~---~~~~~~v~~~~---g~~~~~d~vIvAtG~~ 143 (433)
+.+.. ..-....++.++++..++.++.. +.... .|+-+.. ..+.++|.+.+ +..+.||+||+|||+
T Consensus 80 ~g~~~--~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs- 154 (499)
T PTZ00052 80 YGWKT--SSSFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG- 154 (499)
T ss_pred CCCCC--CCCcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC-
Confidence 11110 11234567777777776665321 22211 2222221 12223344322 346999999999998
Q ss_pred CCCCCCC-CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHH
Q psy2398 144 RVARYPN-YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 144 s~p~~p~-i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
.|..|. ++|.- ...+.+.+...... .+++++|||+|.+|+|+|..|++.+.+||++.+.. .++..
T Consensus 155 -~p~~p~~i~G~~-~~~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~--~l~~~--------- 220 (499)
T PTZ00052 155 -RPSIPEDVPGAK-EYSITSDDIFSLSK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI--PLRGF--------- 220 (499)
T ss_pred -CCCCCCCCCCcc-ceeecHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc--ccccC---------
Confidence 788874 88711 11222222222212 35799999999999999999999999999998742 22321
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEE
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVH 298 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~ 298 (433)
+..+.. .+.+ .+. ..++ ++.....+.++.+ ..+.
T Consensus 221 ----d~~~~~-----~l~~----~l~----~~GV-------------------------~i~~~~~v~~v~~~~~~~~v~ 258 (499)
T PTZ00052 221 ----DRQCSE-----KVVE----YMK----EQGT-------------------------LFLEGVVPINIEKMDDKIKVL 258 (499)
T ss_pred ----CHHHHH-----HHHH----HHH----HcCC-------------------------EEEcCCeEEEEEEcCCeEEEE
Confidence 011111 1111 111 1111 2222333344431 2456
Q ss_pred ecCCceeeccEEEEccCCCCCCCCCCc--cccccc-CCccccccccccCCCCcEEEEccccc-cCChhhHHHHHHHHHHH
Q psy2398 299 FVDDTHIEVDTIIYATGYNRHFPFIDK--EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRS 374 (433)
Q Consensus 299 ~~dG~~~~~D~vi~atG~~~~~~~l~~--~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~-~~~~~~~a~~qa~~~a~ 374 (433)
+.+|+++++|.||+|+|++|+..+|.. ..+..+ .+.+...+. .++.|+||++|||.. .+.+.+.|..||+.+|.
T Consensus 259 ~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ 336 (499)
T PTZ00052 259 FSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGILLAR 336 (499)
T ss_pred ECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHH
Confidence 778988999999999999999998753 334443 344444444 789999999999985 45678899999999999
Q ss_pred HHhhh
Q psy2398 375 YIQAF 379 (433)
Q Consensus 375 ~i~g~ 379 (433)
+|.+.
T Consensus 337 ni~g~ 341 (499)
T PTZ00052 337 RLFKQ 341 (499)
T ss_pred HHhCC
Confidence 99875
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=245.65 Aligned_cols=285 Identities=18% Similarity=0.220 Sum_probs=189.4
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+|||||++|+.+|..|++. +.+|+|+++.+.. . |....+ +.........
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~--------y~~~~l--------------~~~~~~~~~~ 56 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----E--------YNKPDL--------------SHVFSQGQRA 56 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----C--------cCcCcC--------------cHHHhCCCCH
Confidence 5999999999999999999886 4589999987632 0 110000 0000011122
Q ss_pred HHHHH-HHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCC
Q psy2398 86 SMMLD-YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~-~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~ 164 (433)
.++.. ...++++++++ .++++++|++++.+.. .+++ ++..+.||+||+|||+ .|..|+++|.-. +++...
T Consensus 57 ~~~~~~~~~~~~~~~gv--~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~--~~~~p~i~G~~~--v~~~~~ 127 (377)
T PRK04965 57 DDLTRQSAGEFAEQFNL--RLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGA--SAFVPPIPGREL--MLTLNS 127 (377)
T ss_pred HHhhcCCHHHHHHhCCC--EEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCC--CCCCCCCCCCce--EEEECC
Confidence 33333 24556677787 5778899999987543 5555 4557999999999998 788899998211 222211
Q ss_pred CCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 165 YKSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 165 ~~~~-----~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
..+. ....+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.. +++. ++..+.. .+
T Consensus 128 ~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~-l~~~------------~~~~~~~-----~l 189 (377)
T PRK04965 128 QQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL-LASL------------MPPEVSS-----RL 189 (377)
T ss_pred HHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc-cchh------------CCHHHHH-----HH
Confidence 1111 1124789999999999999999999999999999987642 2211 1111111 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEecCCceeeccEEEEccC
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFVDDTHIEVDTIIYATG 315 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~dG~~~~~D~vi~atG 315 (433)
.+.+. ..++ .+.....++++... .+.+.+|+++++|.||+|+|
T Consensus 190 ~~~l~--------~~gV-------------------------~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 190 QHRLT--------EMGV-------------------------HLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred HHHHH--------hCCC-------------------------EEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcC
Confidence 11111 1111 22334456666432 36788999999999999999
Q ss_pred CCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC----ChhhHHHHHHHHHHHHHhhhh
Q psy2398 316 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 316 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----~~~~~a~~qa~~~a~~i~g~~ 380 (433)
++|+..+++...+..+. ++.+++ .+.++.||||++|||+... +.+..+..||+.+|++|.|..
T Consensus 237 ~~p~~~l~~~~gl~~~~-gi~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 237 LRPNTALARRAGLAVNR-GIVVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred CCcchHHHHHCCCCcCC-CEEECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 99998887655555544 355544 4578899999999998642 345668899999999998864
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=251.08 Aligned_cols=291 Identities=18% Similarity=0.210 Sum_probs=190.5
Q ss_pred cEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+|+|||||++|+++|..|++++ .+|+|||+++.++ |... ..+ .+. . ..+....
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~-----~~~--------------~~~-~---~~~~~~~ 56 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC-----GLP--------------YFV-G---GFFDDPN 56 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC-----CCc--------------eEe-c---cccCCHH
Confidence 7999999999999999999875 5899999987652 1100 000 000 0 0011223
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc-cCcEEE--eCEEEEccCCCCCCCCCCCCCCCCCceeccC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKK--YDFIAVCNGAQRVARYPNYSGYFSGEILHSM 163 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~-~g~~~~--~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~ 163 (433)
++..+..+.+++.++ ++.++++|+.|+.+++.+.+... ++..+. ||+||+|||+ .|..|+++|.-...+.+..
T Consensus 57 ~~~~~~~~~~~~~gv--~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~--~~~~~~i~g~~~~~v~~~~ 132 (444)
T PRK09564 57 TMIARTPEEFIKSGI--DVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA--RPIIPPIKNINLENVYTLK 132 (444)
T ss_pred HhhcCCHHHHHHCCC--eEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC--CCCCCCCCCcCCCCEEEEC
Confidence 333333444556677 47789999999887776666542 244566 9999999998 7888888882112333333
Q ss_pred CCCCCC-------CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHH
Q psy2398 164 DYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 236 (433)
Q Consensus 164 ~~~~~~-------~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (433)
.+.+.. ...+++|+|||+|.+|+|+|..+.+.+.+|+++.+.+.. ++. .+..
T Consensus 133 ~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~----------------~~~~---- 191 (444)
T PRK09564 133 SMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI-LPD----------------SFDK---- 191 (444)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc-Cch----------------hcCH----
Confidence 221111 234789999999999999999999999999999887642 221 1100
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCe---EEecCCceeeccEEEEc
Q psy2398 237 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI---VHFVDDTHIEVDTIIYA 313 (433)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---v~~~dG~~~~~D~vi~a 313 (433)
.+.+.+.+.+. ..++ ++.....+.++.+.. ....++.++++|.+|+|
T Consensus 192 -~~~~~l~~~l~----~~gI-------------------------~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a 241 (444)
T PRK09564 192 -EITDVMEEELR----ENGV-------------------------ELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVA 241 (444)
T ss_pred -HHHHHHHHHHH----HCCC-------------------------EEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEEC
Confidence 11111111111 1111 233344555554321 22345567999999999
Q ss_pred cCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhhh
Q psy2398 314 TGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 314 tG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|++|+.++++...+.. +.+++.++..+ .++.||||++|||+.. ...++.|..||+.+|++|.|..
T Consensus 242 ~G~~p~~~~l~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 242 TGVKPNTEFLEDTGLKTLKNGAIIVDEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH 318 (444)
T ss_pred cCCCcCHHHHHhcCccccCCCCEEECCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence 99999998888666654 34567666654 6789999999999853 2456789999999999998864
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=255.91 Aligned_cols=316 Identities=17% Similarity=0.163 Sum_probs=190.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC-CCCCCcccCCCCCCccccceEeecCCCc------------ccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME-SDLGGVWNSQASCGRVYPSLHLISPKFN------------TQVP 71 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~-~~~Gg~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 71 (433)
...|||+|||||++|+.+|..+++.|.+|+|||+. ..+||+|.+..+ .|+..+...... +...
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GC----iPsK~l~~~a~~~~~~~~~~~~~~~Gi~ 189 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGC----IPSKALLYATGKYRELKNLAKLYTYGIY 189 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCC----cchHHHHHHHHHHHHHHhccccccCCee
Confidence 44689999999999999999999999999999974 369999988743 332221111100 0000
Q ss_pred --CCC------CCCC----CCCCCCHHHHHHHHHHHHHHcC--CCc-----ceEeCcEEEEEEEe----CCeEEEEE-cc
Q psy2398 72 --DYP------MPDN----YPVYPNHSMMLDYLRSYAKKFD--VYN-----HSIFNTEVINLEQY----EDIWEVEL-SN 127 (433)
Q Consensus 72 --~~~------~~~~----~~~~~~~~~~~~~l~~~~~~~~--~~~-----~i~~~~~V~~v~~~----~~~~~v~~-~~ 127 (433)
.++ .+.. ...-.....+.++.+...+++. +.. .+...++...+... .+..+|.. .+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~ 269 (659)
T PTZ00153 190 TNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKS 269 (659)
T ss_pred eccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccC
Confidence 000 0000 0011245556666655554431 100 01111222223221 11112332 35
Q ss_pred CcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 128 GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 128 g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
++++.||+||+|||+ .|..|++++.....++++.+...... .+++|+|||+|.+|+|+|..+...|.+||++.+.+.
T Consensus 270 g~~i~ad~lIIATGS--~P~~P~~~~~~~~~V~ts~d~~~l~~-lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 270 GKEFKVKNIIIATGS--TPNIPDNIEVDQKSVFTSDTAVKLEG-LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CEEEECCEEEEcCCC--CCCCCCCCCCCCCcEEehHHhhhhhh-cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 567999999999998 88888765522223444433322222 367999999999999999999999999999998875
Q ss_pred eeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecC
Q psy2398 208 HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD 287 (433)
Q Consensus 208 ~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 287 (433)
++|... ..+.. .+.+.+. ...++ ++....
T Consensus 347 -ll~~~d-------------~eis~-----~l~~~ll-------~~~GV-------------------------~I~~~~ 375 (659)
T PTZ00153 347 -LLPLLD-------------ADVAK-----YFERVFL-------KSKPV-------------------------RVHLNT 375 (659)
T ss_pred -ccccCC-------------HHHHH-----HHHHHHh-------hcCCc-------------------------EEEcCC
Confidence 223110 11111 1111110 00111 222334
Q ss_pred CceeeeCC----eEE--ecC-------C--------ceeeccEEEEccCCCCCCCCCCc--ccccccCCccccccccccC
Q psy2398 288 DIKNLNGN----IVH--FVD-------D--------THIEVDTIIYATGYNRHFPFIDK--EKLEWKLGIPDLFIHIAPR 344 (433)
Q Consensus 288 ~v~~~~~~----~v~--~~d-------G--------~~~~~D~vi~atG~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~ 344 (433)
.++++++. .+. +.+ + +++++|.||+|||++|++.+|.. ..+..+.+++.+++++ .+
T Consensus 376 ~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~l-qT 454 (659)
T PTZ00153 376 LIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHL-RV 454 (659)
T ss_pred EEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCC-Cc
Confidence 45555321 122 221 1 36899999999999999998643 3344445566666654 44
Q ss_pred C------CCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 345 N------LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 345 ~------~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+ +|+||++|||...+.+.+.|..||+.++++|.|.
T Consensus 455 s~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 455 LREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 4 6999999999876778899999999999999886
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=254.36 Aligned_cols=304 Identities=14% Similarity=0.131 Sum_probs=188.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEcc---------CCCCCCcccCCCCCCccccceEeecCCCc-c---cCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEM---------ESDLGGVWNSQASCGRVYPSLHLISPKFN-T---QVPDY 73 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~---------~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~ 73 (433)
.|||+|||||++|+.+|..++++|.+|+|+|+ ...+||+|.+.. |.|+..+...... . ....+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~G----CiPsK~l~~aa~~~~~~~~~~~~ 154 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRG----CVPKKLLVYASKYSHEFEESRGF 154 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcc----hHHHHHHHHHHHHHHHHHhhhhc
Confidence 48999999999999999999999999999996 245899999874 4444433221111 0 00111
Q ss_pred CCCCCCCCCCCHH-----------HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 74 PMPDNYPVYPNHS-----------MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 74 ~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
............. .+.+++....++.++ .+.. .+++.++. + +|.+ +|+.+.||+||+|||+
T Consensus 155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~-G~a~~vd~--~--~V~v-~G~~~~~D~LVIATGs 226 (558)
T PLN02546 155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIE-GRGKIVDP--H--TVDV-DGKLYTARNILIAVGG 226 (558)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-eEEEEccC--C--EEEE-CCEEEECCEEEEeCCC
Confidence 1100000011111 223333333444444 2222 23333332 2 3444 4667999999999998
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHH
Q psy2398 143 QRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 143 ~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
.|..|+++|. ..++++.+.... ...+++|+|||+|.+|+|+|..|+..+.+|+++.+.+. +++..
T Consensus 227 --~p~~P~IpG~--~~v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~-il~~~--------- 291 (558)
T PLN02546 227 --RPFIPDIPGI--EHAIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK-VLRGF--------- 291 (558)
T ss_pred --CCCCCCCCCh--hhccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc-ccccc---------
Confidence 8899999981 112222222211 12478999999999999999999999999999998764 22211
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee---CCe--E
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN---GNI--V 297 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~---~~~--v 297 (433)
+..+.. .+.+. +. ..++ ++.....+.++. +.. +
T Consensus 292 ----d~~~~~-----~l~~~----L~----~~GV-------------------------~i~~~~~v~~i~~~~~g~v~v 329 (558)
T PLN02546 292 ----DEEVRD-----FVAEQ----MS----LRGI-------------------------EFHTEESPQAIIKSADGSLSL 329 (558)
T ss_pred ----CHHHHH-----HHHHH----HH----HCCc-------------------------EEEeCCEEEEEEEcCCCEEEE
Confidence 011111 11111 11 1111 222334455553 222 2
Q ss_pred EecCCceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHH
Q psy2398 298 HFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 374 (433)
Q Consensus 298 ~~~dG~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~ 374 (433)
.+.+++...+|.||+|+|++|+..+| +...+..+ ++++.++++ +.++.|+||++|||+....+.+.|..|++.+|.
T Consensus 330 ~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~-l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~ 408 (558)
T PLN02546 330 KTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEY-SRTSVPSIWAVGDVTDRINLTPVALMEGGALAK 408 (558)
T ss_pred EECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCC-ceeCCCCEEEeeccCCCcccHHHHHHHHHHHHH
Confidence 33455545689999999999999875 43445553 355666654 478999999999999877788899999999999
Q ss_pred HHhhhh
Q psy2398 375 YIQAFI 380 (433)
Q Consensus 375 ~i~g~~ 380 (433)
++.|..
T Consensus 409 ~i~g~~ 414 (558)
T PLN02546 409 TLFGNE 414 (558)
T ss_pred HHcCCC
Confidence 998853
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=249.32 Aligned_cols=310 Identities=17% Similarity=0.163 Sum_probs=189.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEcc------CCCCCCcccCCCCCCccccceEeec-CCCcccC----CCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEM------ESDLGGVWNSQASCGRVYPSLHLIS-PKFNTQV----PDYP 74 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~------~~~~Gg~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~ 74 (433)
..+||+||||||+|++||.++++.|.+|+|+|+ ...+||+|.+.. |.|+..+.. ......+ ..+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~g----c~P~k~l~~~a~~~~~~~~~~~~~G 78 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVG----CIPSKALLASSEEFENAGHHFADHG 78 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccccc----ccHHHHHHHHHHHHHHHHhhHHhcC
Confidence 468999999999999999999999999999998 357899997763 344322111 1111100 1111
Q ss_pred CCCCCCCCCCHHHHHH-----------HHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc--cCcEEEeCEEEEccC
Q psy2398 75 MPDNYPVYPNHSMMLD-----------YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NGKKKKYDFIAVCNG 141 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g~~~~~d~vIvAtG 141 (433)
...... -.....+.+ -.....+..++ .+. ..++..++.+++.++|.+. ++.+++||+||+|||
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATG 154 (475)
T PRK06327 79 IHVDGV-KIDVAKMIARKDKVVKKMTGGIEGLFKKNKI--TVL-KGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATG 154 (475)
T ss_pred ccCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCC
Confidence 110000 011222222 22223333344 122 3345555544456667654 345799999999999
Q ss_pred CCCCCCCCCCCCCCCCceeccCC-CCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChh
Q psy2398 142 AQRVARYPNYSGYFSGEILHSMD-YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTP 220 (433)
Q Consensus 142 ~~s~p~~p~i~g~~~g~~~~~~~-~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~ 220 (433)
+ .|+.|+..+ +.+..++.+. .... ...+++|+|||+|.+|+|+|..+.+.+.+|+++.+++.. +|.. +
T Consensus 155 s--~p~~~p~~~-~~~~~~~~~~~~~~~-~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~-l~~~----d-- 223 (475)
T PRK06327 155 S--EPRHLPGVP-FDNKIILDNTGALNF-TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF-LAAA----D-- 223 (475)
T ss_pred C--CCCCCCCCC-CCCceEECcHHHhcc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc-CCcC----C--
Confidence 8 665432221 2333233222 2222 234689999999999999999999999999999987642 2211 0
Q ss_pred HHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--e
Q psy2398 221 QWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--I 296 (433)
Q Consensus 221 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~ 296 (433)
. .+.+.+.+.+. ..++ ++.....|.+++. . .
T Consensus 224 -------~---------~~~~~~~~~l~----~~gi-------------------------~i~~~~~v~~i~~~~~~v~ 258 (475)
T PRK06327 224 -------E---------QVAKEAAKAFT----KQGL-------------------------DIHLGVKIGEIKTGGKGVS 258 (475)
T ss_pred -------H---------HHHHHHHHHHH----HcCc-------------------------EEEeCcEEEEEEEcCCEEE
Confidence 1 11111111111 0111 3333455666642 2 2
Q ss_pred EEecC--C--ceeeccEEEEccCCCCCCCCCCc--ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 297 VHFVD--D--THIEVDTIIYATGYNRHFPFIDK--EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 297 v~~~d--G--~~~~~D~vi~atG~~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
+.+.+ | .++++|.||+|+|++|+.+++.. ..+.. ..+.+.+++. +.++.|+||++|||...+...+.|..|+
T Consensus 259 v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~Ts~~~VyA~GD~~~~~~~~~~A~~~G 337 (475)
T PRK06327 259 VAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDH-CRTNVPNVYAIGDVVRGPMLAHKAEEEG 337 (475)
T ss_pred EEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCC-CccCCCCEEEEEeccCCcchHHHHHHHH
Confidence 44444 3 46899999999999999986543 23333 3355666654 4788999999999987667788999999
Q ss_pred HHHHHHHhhhh
Q psy2398 370 QFIRSYIQAFI 380 (433)
Q Consensus 370 ~~~a~~i~g~~ 380 (433)
+.+|.++.|..
T Consensus 338 ~~aa~~i~g~~ 348 (475)
T PRK06327 338 VAVAERIAGQK 348 (475)
T ss_pred HHHHHHHcCCC
Confidence 99999998754
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=247.43 Aligned_cols=305 Identities=19% Similarity=0.162 Sum_probs=190.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc----CCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 83 (433)
+||+|||||++|+++|..|++.|.+|+|+|+ +.+||+|.... |+|+..+........ ...+...... ...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~g----c~Psk~l~~~~~~~~~~~~~~~~g~~~~~-~~~ 75 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVG----CIPTKALLHSAEVYDEIKHAKDYGIEVEN-VSV 75 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecC----ccchHHHHHHhhHHHHHHHHHhcCCCCCC-CcC
Confidence 8999999999999999999999999999999 78999988652 344432222111110 1111110000 112
Q ss_pred CHHHHHHHHHH-----------HHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCCC
Q psy2398 84 NHSMMLDYLRS-----------YAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 84 ~~~~~~~~l~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
+...+.+..+. ..+..++ .+..+ ++..+ +.+.+.+...++ .++.||+||+|||+ .|+.|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~--~~~~~~v~~~~g~~~~~~d~lVlAtG~--~p~~~~~ 148 (461)
T TIGR01350 76 DWEKMQKRKNKVVKKLVGGVKGLLKKNKV--TVIKG-EAKFL--DPGTVLVTGENGEETLTAKNIIIATGS--RPRSLPG 148 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEc--cCCEEEEecCCCcEEEEeCEEEEcCCC--CCCCCCC
Confidence 22333332222 2233343 12222 22222 246667766554 46999999999998 7777776
Q ss_pred C-CCCCCc-eeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 152 S-GYFSGE-ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 152 ~-g~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
+ + +.+. +.++.+.... ...+++++|||+|.+|+|+|..+.+.+.+|+++.|.+.. +|.. ..
T Consensus 149 ~~~-~~~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~-------------~~- 211 (461)
T TIGR01350 149 PFD-FDGEVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI-LPGE-------------DA- 211 (461)
T ss_pred CCC-CCCceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC-CCCC-------------CH-
Confidence 5 3 1222 3333222222 224689999999999999999999999999999988642 2211 01
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCeE--EecCC--c
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNIV--HFVDD--T 303 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~v--~~~dG--~ 303 (433)
.+.+.+.+.+. ..++ ++.....+.+++ +..+ .+.+| .
T Consensus 212 --------~~~~~~~~~l~----~~gi-------------------------~i~~~~~v~~i~~~~~~v~v~~~~g~~~ 254 (461)
T TIGR01350 212 --------EVSKVVAKALK----KKGV-------------------------KILTNTKVTAVEKNDDQVVYENKGGETE 254 (461)
T ss_pred --------HHHHHHHHHHH----HcCC-------------------------EEEeCCEEEEEEEeCCEEEEEEeCCcEE
Confidence 11111111111 0111 233345566553 3333 34567 4
Q ss_pred eeeccEEEEccCCCCCCC--CCCcccccccC-CccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 304 HIEVDTIIYATGYNRHFP--FIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 304 ~~~~D~vi~atG~~~~~~--~l~~~~~~~~~-~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
++++|.||+|+|++|+.+ +++...+..+. +.+.+++ .+.++.|+||++||+...+.....|..||+.+|.++.++.
T Consensus 255 ~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 255 TLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDE-YMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred EEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCC-CcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 799999999999999988 45544444433 4566654 4577899999999998766778899999999999998764
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=244.34 Aligned_cols=289 Identities=16% Similarity=0.150 Sum_probs=185.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+|+|||||++|++||..|++.|. +|+++++.+... +..+ ..++....- .... .....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~----------~l~~~~~~~---~~~~--~~~~~ 63 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERP----------PLSKSMLLE---DSPQ--LQQVL 63 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCC----------CCCHHHHCC---CCcc--ccccC
Confidence 3689999999999999999999876 799999876441 1100 000000000 0000 00000
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 164 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~ 164 (433)
. .++....++ .++.++.|..++.+. ..|++.+|..+.||+||+|||+ .|+.|++++.....+.....
T Consensus 64 ~-------~~~~~~~~i--~~~~g~~V~~id~~~--~~v~~~~g~~~~yd~LViATGs--~~~~~p~~~~~~~~v~~~~~ 130 (396)
T PRK09754 64 P-------ANWWQENNV--HLHSGVTIKTLGRDT--RELVLTNGESWHWDQLFIATGA--AARPLPLLDALGERCFTLRH 130 (396)
T ss_pred C-------HHHHHHCCC--EEEcCCEEEEEECCC--CEEEECCCCEEEcCEEEEccCC--CCCCCCCCCcCCCCEEecCC
Confidence 1 122334566 477788999998743 4566777888999999999999 66766665522222222111
Q ss_pred CCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 165 YKSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 165 ~~~~-----~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
..+. ....+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.. +++. ++..+.. .+
T Consensus 131 ~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~~------------~~~~~~~-----~l 192 (396)
T PRK09754 131 AGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATV-MGRN------------APPPVQR-----YL 192 (396)
T ss_pred HHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc-hhhh------------cCHHHHH-----HH
Confidence 1111 1124789999999999999999999999999999987642 1211 0111111 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-C--eEEecCCceeeccEEEEccCC
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-N--IVHFVDDTHIEVDTIIYATGY 316 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-~--~v~~~dG~~~~~D~vi~atG~ 316 (433)
.+. +. ..++ ++.....++++.. . .+.+.+|+++++|.||+|+|.
T Consensus 193 ~~~----l~----~~GV-------------------------~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 193 LQR----HQ----QAGV-------------------------RILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHH----HH----HCCC-------------------------EEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCC
Confidence 111 11 1111 2333455666643 2 356789999999999999999
Q ss_pred CCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC---------ChhhHHHHHHHHHHHHHhhhh
Q psy2398 317 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA---------GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~---------~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|+..++....+..+ +++.++.. +.++.|+||++|||+..+ ..++.|..||+.+|++|.|..
T Consensus 240 ~pn~~l~~~~gl~~~-~gi~vd~~-~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 240 SANDQLAREANLDTA-NGIVIDEA-CRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred ChhhHHHHhcCCCcC-CCEEECCC-CccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 999877765555443 45555544 578899999999998421 246789999999999998864
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=242.52 Aligned_cols=294 Identities=17% Similarity=0.174 Sum_probs=184.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC-CCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD-LGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~-~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+||+||||||+|++||..|++.|.+|++||+.+. +||+|.... |.|+..+...... ....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~g----ciP~k~~~~~~~~--------------~~~~ 64 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIG----CIPTKTLLVAAEK--------------NLSF 64 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCc----cccchHhhhhhhc--------------CCCH
Confidence 48999999999999999999999999999999864 699876542 2222221111100 0111
Q ss_pred HHHHHHHH-----------HHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEEccCCCCCCCCCCCCC
Q psy2398 86 SMMLDYLR-----------SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQRVARYPNYSG 153 (433)
Q Consensus 86 ~~~~~~l~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIvAtG~~s~p~~p~i~g 153 (433)
.++.++.+ +...+.++ .+..+ ++..+ ++....++..+ ..++.||+||+|||+ .|+.|+++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs--~~~~p~i~G 137 (438)
T PRK07251 65 EQVMATKNTVTSRLRGKNYAMLAGSGV--DLYDA-EAHFV--SNKVIEVQAGDEKIELTAETIVINTGA--VSNVLPIPG 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCC--CCCCCCCCC
Confidence 22222211 22233333 12222 12111 13444444322 246899999999999 788889998
Q ss_pred CC-CCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 154 YF-SGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 154 ~~-~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
.. ...++++..+.... ..+++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|+.. ..+..
T Consensus 138 ~~~~~~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~~-------------~~~~~ 202 (438)
T PRK07251 138 LADSKHVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI-LPREE-------------PSVAA 202 (438)
T ss_pred cCCCCcEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc-CCCCC-------------HHHHH
Confidence 21 12344444333332 23689999999999999999999999999999987642 23210 01100
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeE-EecCCceeeccE
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIV-HFVDDTHIEVDT 309 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v-~~~dG~~~~~D~ 309 (433)
.+.+ .+. ..++ ++.....+.+++. ..+ ...+|+++++|.
T Consensus 203 -----~~~~----~l~----~~GI-------------------------~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~ 244 (438)
T PRK07251 203 -----LAKQ----YME----EDGI-------------------------TFLLNAHTTEVKNDGDQVLVVTEDETYRFDA 244 (438)
T ss_pred -----HHHH----HHH----HcCC-------------------------EEEcCCEEEEEEecCCEEEEEECCeEEEcCE
Confidence 1111 111 0111 2223344555542 233 335677899999
Q ss_pred EEEccCCCCCCCCCCc--ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 310 IIYATGYNRHFPFIDK--EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 310 vi~atG~~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
||+|||++|+.+.+.. ..+.. ..+.+.+++. +.++.|+||++|||...+...+.+..|++.++.++.+.
T Consensus 245 viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~-~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 245 LLYATGRKPNTEPLGLENTDIELTERGAIKVDDY-CQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred EEEeeCCCCCcccCCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 9999999999887643 23333 3355666654 57889999999999876677788999999999998765
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=246.88 Aligned_cols=306 Identities=17% Similarity=0.129 Sum_probs=184.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC--------CCCCcccCCCCCCccccceEeecCCCccc----CCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES--------DLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYP 74 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~--------~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 74 (433)
.+||+|||||++|+.+|..+++.|.+|+++|+.. .+||+|.+.. |.|+..+........ ...+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~G----CiPsK~l~~~a~~~~~~~~~~~~g 77 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVG----CIPKKLMHQAALLGQALKDSRNYG 77 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccC----cCchhHHHHHHHHHHHHhhhhhcC
Confidence 4899999999999999999999999999999731 4899998863 455443222211100 01111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-----------cCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccC
Q psy2398 75 MPDNYPVYPNHSMMLDYLRSYAKK-----------FDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNG 141 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG 141 (433)
+............+.++.++..++ .++. +. .-...-+ +.+...|+..++ .++.||+||+|||
T Consensus 78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i-~G~a~f~--~~~~v~v~~~~g~~~~~~~d~lVIATG 152 (484)
T TIGR01438 78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YE-NAYAEFV--DKHRIKATNKKGKEKIYSAERFLIATG 152 (484)
T ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EE-EEEEEEc--CCCEEEEeccCCCceEEEeCEEEEecC
Confidence 100000012233333333333222 2221 11 1111111 134455544343 3689999999999
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhH
Q psy2398 142 AQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ 221 (433)
Q Consensus 142 ~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~ 221 (433)
+ .|..|++||.- ...+++.+...... ..++++|||+|.+|+|+|..|++.+.+|+++.|. . ++|...
T Consensus 153 s--~p~~p~ipG~~-~~~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-~l~~~d------- 219 (484)
T TIGR01438 153 E--RPRYPGIPGAK-ELCITSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-LLRGFD------- 219 (484)
T ss_pred C--CCCCCCCCCcc-ceeecHHHhhcccc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-cccccC-------
Confidence 8 88999999821 11223322322222 3568999999999999999999999999999874 2 333210
Q ss_pred HhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee---C-CeE
Q psy2398 222 WMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN---G-NIV 297 (433)
Q Consensus 222 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~---~-~~v 297 (433)
..+.. .+.+ .+. ..++ ++.....+.++. + ..+
T Consensus 220 ------~~~~~-----~l~~----~L~----~~gV-------------------------~i~~~~~v~~v~~~~~~~~v 255 (484)
T TIGR01438 220 ------QDCAN-----KVGE----HME----EHGV-------------------------KFKRQFVPIKVEQIEAKVKV 255 (484)
T ss_pred ------HHHHH-----HHHH----HHH----HcCC-------------------------EEEeCceEEEEEEcCCeEEE
Confidence 11111 1111 111 1111 222233334443 1 235
Q ss_pred EecCCc---eeeccEEEEccCCCCCCCCCC--ccccccc--CCccccccccccCCCCcEEEEccccc-cCChhhHHHHHH
Q psy2398 298 HFVDDT---HIEVDTIIYATGYNRHFPFID--KEKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQG 369 (433)
Q Consensus 298 ~~~dG~---~~~~D~vi~atG~~~~~~~l~--~~~~~~~--~~~~~~~~~~~~~~~p~i~~iG~~~~-~~~~~~~a~~qa 369 (433)
.+++|. ++++|.||+|+|++|+..+|. ...+..+ .+.+.+++ .+.|+.|+||++|||.. ...+.+.|..||
T Consensus 256 ~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~-~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g 334 (484)
T TIGR01438 256 TFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADE-EEQTNVPYIYAVGDILEDKQELTPVAIQAG 334 (484)
T ss_pred EEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCC-CcccCCCCEEEEEEecCCCccchHHHHHHH
Confidence 566663 699999999999999998864 3334443 24455544 56789999999999985 356778899999
Q ss_pred HHHHHHHhhh
Q psy2398 370 QFIRSYIQAF 379 (433)
Q Consensus 370 ~~~a~~i~g~ 379 (433)
+.++++|.+.
T Consensus 335 ~~aa~~i~~~ 344 (484)
T TIGR01438 335 RLLAQRLFSG 344 (484)
T ss_pred HHHHHHHhcC
Confidence 9999999874
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=258.58 Aligned_cols=287 Identities=17% Similarity=0.185 Sum_probs=193.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
++|+|||+|++|+.+|..|++. +++|+||++.+.++ |....+.. . + .. .
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~------------Y~r~~L~~--~---~---------~~-~ 56 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA------------YDRVHLSS--Y---F---------SH-H 56 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc------------ccCCcchH--h---H---------cC-C
Confidence 5899999999999999999864 47999999987642 11111110 0 0 00 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceecc
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHS 162 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~ 162 (433)
...++......+.++.++ +++.++.|+.|+++ ...|++.+|..+.||+||+|||+ .|..|+++| ...+ ++..
T Consensus 57 ~~~~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~--~~~V~~~~G~~i~yD~LVIATGs--~p~~p~ipG~~~~~-v~~~ 129 (847)
T PRK14989 57 TAEELSLVREGFYEKHGI--KVLVGERAITINRQ--EKVIHSSAGRTVFYDKLIMATGS--YPWIPPIKGSETQD-CFVY 129 (847)
T ss_pred CHHHccCCCHHHHHhCCC--EEEcCCEEEEEeCC--CcEEEECCCcEEECCEEEECCCC--CcCCCCCCCCCCCC-eEEE
Confidence 122333333344556677 57888899999874 34677778888999999999998 889999998 3222 2211
Q ss_pred CCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 163 MDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 163 ~~~~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
....+.. ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.. +|+. +..
T Consensus 130 rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l-l~~~----------------ld~----- 187 (847)
T PRK14989 130 RTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML-MAEQ----------------LDQ----- 187 (847)
T ss_pred CCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc-hhhh----------------cCH-----
Confidence 1111111 124689999999999999999999999999999987642 2211 111
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC------CeEEecCCceeeccEEE
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG------NIVHFVDDTHIEVDTII 311 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~------~~v~~~dG~~~~~D~vi 311 (433)
...+.+.+.+ +..++ ++.....++++.+ ..+.++||+++++|.||
T Consensus 188 ~~~~~l~~~L----~~~GV-------------------------~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv 238 (847)
T PRK14989 188 MGGEQLRRKI----ESMGV-------------------------RVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIV 238 (847)
T ss_pred HHHHHHHHHH----HHCCC-------------------------EEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEE
Confidence 1111111111 11122 2333445566532 24678999999999999
Q ss_pred EccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccC----ChhhHHHHHHHHHHHHHhhhh
Q psy2398 312 YATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 312 ~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~----~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|+|++|+..++....+... ++++.+++ .+.++.|+||++|||+... +++..+..||+.+|.+|.|..
T Consensus 239 ~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~-~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 239 FSTGIRPQDKLATQCGLAVAPRGGIVIND-SCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred ECCCcccCchHHhhcCccCCCCCcEEECC-CCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 99999999888766666553 45666665 4578899999999999642 356778999999999999864
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=259.75 Aligned_cols=285 Identities=17% Similarity=0.158 Sum_probs=191.6
Q ss_pred EEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 10 LCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
|+|||||++|+.+|.+|++. +++|+|||+.+..+ |....+. ....+.....
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~------------y~r~~L~--------------~~l~g~~~~~ 54 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN------------YNRILLS--------------SVLQGEADLD 54 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC------------ccccccc--------------HHHCCCCCHH
Confidence 68999999999999999875 46999999987652 1110000 0000111222
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDY 165 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~~ 165 (433)
++.....++.++.++ +++++++|+.|+.+ .+.|++.+|.++.||+||+|||+ .|..|++|| ...+ +......
T Consensus 55 ~l~~~~~~~~~~~gv--~~~~g~~V~~Id~~--~k~V~~~~g~~~~yD~LVlATGs--~p~~p~ipG~~~~~-v~~~rt~ 127 (785)
T TIGR02374 55 DITLNSKDWYEKHGI--TLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGS--YPFILPIPGADKKG-VYVFRTI 127 (785)
T ss_pred HccCCCHHHHHHCCC--EEEcCCeEEEEECC--CCEEEECCCcEeeCCEEEECCCC--CcCCCCCCCCCCCC-EEEeCCH
Confidence 332223344556677 58889999999874 35677888888999999999998 889999998 3332 2221111
Q ss_pred CCCC-----CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHH
Q psy2398 166 KSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 240 (433)
Q Consensus 166 ~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (433)
.+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+ +++. ++..... .+.
T Consensus 128 ~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l-l~~~------------ld~~~~~-----~l~ 189 (785)
T TIGR02374 128 EDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL-MAKQ------------LDQTAGR-----LLQ 189 (785)
T ss_pred HHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch-hhhh------------cCHHHHH-----HHH
Confidence 1111 124689999999999999999999999999999987642 2211 0011111 111
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEEecCCceeeccEEEEccCC
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFVDDTHIEVDTIIYATGY 316 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~~~dG~~~~~D~vi~atG~ 316 (433)
+ .+ ...++ ++.....+.++.+ ..|.++||+++++|.||+|+|+
T Consensus 190 ~----~l----~~~GV-------------------------~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 190 R----EL----EQKGL-------------------------TFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred H----HH----HHcCC-------------------------EEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 1 11 11122 3334445555543 3477899999999999999999
Q ss_pred CCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC----ChhhHHHHHHHHHHHHHhhhh
Q psy2398 317 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|+.+++....+... +++.+++ .+.++.|+|||+||++... +.+..+..||+.+|.+|.|..
T Consensus 237 ~Pn~~la~~~gl~~~-ggI~Vd~-~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 237 RPNDELAVSAGIKVN-RGIIVND-SMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred CcCcHHHHhcCCccC-CCEEECC-CcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 999988765555554 4555554 4578999999999998632 345567899999999999875
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=242.06 Aligned_cols=293 Identities=19% Similarity=0.229 Sum_probs=183.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+.. +.+. .+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gi--------------------p~~~--------l~~ 190 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGI--------------------PEFR--------LPK 190 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecC--------------------CCcc--------CCc
Confidence 457999999999999999999999999999999988999876541 1111 112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~ 163 (433)
.++..+..+.++++++ .+++++.|.. .++..+. ..+.||.||+|||++ .|+.|+++| ...+ ++.+.
T Consensus 191 ~~~~~~~~~~~~~~gv--~i~~~~~v~~--------~v~~~~~~~~~~~d~viiAtGa~-~~~~l~ipG~~~~g-V~~~~ 258 (464)
T PRK12831 191 ETVVKKEIENIKKLGV--KIETNVVVGK--------TVTIDELLEEEGFDAVFIGSGAG-LPKFMGIPGENLNG-VFSAN 258 (464)
T ss_pred cHHHHHHHHHHHHcCC--EEEcCCEECC--------cCCHHHHHhccCCCEEEEeCCCC-CCCCCCCCCcCCcC-cEEHH
Confidence 3355555667777787 5777775521 1222222 235699999999983 577888888 3322 22221
Q ss_pred CC----------C---CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 164 DY----------K---SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 164 ~~----------~---~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
++ . ......+++|+|||+|++|+|+|..+.+.|.+|+++.|++...+| ...
T Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~----------------a~~ 322 (464)
T PRK12831 259 EFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP----------------ARV 322 (464)
T ss_pred HHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC----------------CCH
Confidence 11 1 112346899999999999999999999999999999987642222 110
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCee-ecC-Cc--eeee--CC-eEEecC
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDIL-PKD-DI--KNLN--GN-IVHFVD 301 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~-~~~-~v--~~~~--~~-~v~~~d 301 (433)
...+... ..|+. ...+....+.. ..|++. +.. .+ ...+ +. .-...+
T Consensus 323 -------~e~~~a~--------~eGV~----------i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~ 377 (464)
T PRK12831 323 -------EEVHHAK--------EEGVI----------FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIE 377 (464)
T ss_pred -------HHHHHHH--------HcCCE----------EEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecC
Confidence 0000000 00110 00000000000 011111 000 00 0000 00 001113
Q ss_pred Cc--eeeccEEEEccCCCCCCCCCCc-ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHh
Q psy2398 302 DT--HIEVDTIIYATGYNRHFPFIDK-EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQ 377 (433)
Q Consensus 302 G~--~~~~D~vi~atG~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~ 377 (433)
|+ ++++|.||+|+|+.|+..++.. ..+.. ..+.+.+++..+.|+.|+||++||+...+..+..|..+|+.+|..|.
T Consensus 378 g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 378 GSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred CceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 33 5899999999999999887764 34444 33556666665789999999999998766677889999999998886
Q ss_pred hh
Q psy2398 378 AF 379 (433)
Q Consensus 378 g~ 379 (433)
..
T Consensus 458 ~~ 459 (464)
T PRK12831 458 EY 459 (464)
T ss_pred HH
Confidence 54
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=239.46 Aligned_cols=274 Identities=20% Similarity=0.207 Sum_probs=178.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+..+ .+...
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip-----------------------------~~~~~ 182 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIP-----------------------------EFRLP 182 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCC-----------------------------CccCC
Confidence 4579999999999999999999999999999999889887755411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.+.......+.++ .++.++.+. ..+++.+. ...||+||+|||+. .|+.|+++| ...+ +++..+
T Consensus 183 ~~~~~~~~~~l~~~gv--~~~~~~~v~--------~~v~~~~~-~~~yd~viiAtGa~-~p~~~~ipG~~~~g-v~~~~~ 249 (449)
T TIGR01316 183 KEIVVTEIKTLKKLGV--TFRMNFLVG--------KTATLEEL-FSQYDAVFIGTGAG-LPKLMNIPGEELCG-VYSAND 249 (449)
T ss_pred HHHHHHHHHHHHhCCc--EEEeCCccC--------CcCCHHHH-HhhCCEEEEeCCCC-CCCcCCCCCCCCCC-cEEHHH
Confidence 3444444455566676 466665431 12333332 24699999999973 578888888 3333 222221
Q ss_pred CC--------------CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 165 YK--------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 165 ~~--------------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
+. ......+++|+|||+|++|+|+|..+.+.|.+||++.|++...++. .
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~----------------~- 312 (449)
T TIGR01316 250 FLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTA----------------R- 312 (449)
T ss_pred HHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCC----------------C-
Confidence 11 1112468999999999999999999999999999999986421111 0
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC---C---eEEec----
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG---N---IVHFV---- 300 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~---~---~v~~~---- 300 (433)
. ...+.+. ..|+ .+.....+.++.+ . +|.+.
T Consensus 313 -~-----~~~~~l~--------~~GV-------------------------~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 353 (449)
T TIGR01316 313 -V-----EEIAHAE--------EEGV-------------------------KFHFLCQPVEIIGDEEGNVRAVKFRKMDC 353 (449)
T ss_pred -H-----HHHHHHH--------hCCC-------------------------EEEeccCcEEEEEcCCCeEEEEEEEEEEe
Confidence 0 1111110 0111 1111111222110 0 11111
Q ss_pred -----CC-----------ceeeccEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhh
Q psy2398 301 -----DD-----------THIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGD 363 (433)
Q Consensus 301 -----dG-----------~~~~~D~vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~ 363 (433)
+| .++++|.||+|+|++|+..+++...+..+ .+.+.++. .+.|+.|+||++||+...+..+.
T Consensus 354 ~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~-~~~Ts~~~VfA~GD~~~g~~~v~ 432 (449)
T TIGR01316 354 QEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDE-DQRTSIPGVFAGGDIILGAATVI 432 (449)
T ss_pred cCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCC-CCccCCCCEEEecCCCCCcHHHH
Confidence 12 25899999999999999888775555543 34555544 46788999999999987667778
Q ss_pred HHHHHHHHHHHHHhh
Q psy2398 364 GLRLQGQFIRSYIQA 378 (433)
Q Consensus 364 ~a~~qa~~~a~~i~g 378 (433)
.|..||+.+|..|..
T Consensus 433 ~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 433 RAMGQGKRAAKSINE 447 (449)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999998864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=250.87 Aligned_cols=295 Identities=19% Similarity=0.218 Sum_probs=184.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+|++||..|++.|++|+|||+.+.+||.+.+..| .+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP-----------------------------~~Rlp 588 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIP-----------------------------QFRIP 588 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecc-----------------------------ccccc
Confidence 3579999999999999999999999999999999999998765411 11111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 165 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~ 165 (433)
.++.+.-.+.+..+++ ++++++.+ .++ +++.....||+||+|||++ .+..++++|.-. .++++.++
T Consensus 589 ~evL~~die~l~~~GV--e~~~gt~V-di~---------le~L~~~gYDaVILATGA~-~~~~l~IpG~~~-gV~saldf 654 (1019)
T PRK09853 589 AELIQHDIEFVKAHGV--KFEFGCSP-DLT---------VEQLKNEGYDYVVVAIGAD-KNGGLKLEGGNQ-NVIKALPF 654 (1019)
T ss_pred HHHHHHHHHHHHHcCC--EEEeCcee-EEE---------hhhheeccCCEEEECcCCC-CCCCCCCCCccC-CceehHHH
Confidence 2333444455666777 58888766 222 1222345699999999995 345556777211 22222221
Q ss_pred CC------CCCCCCCeEEEEcCCCCHHHHHHHHhcc-C-CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 166 KS------PDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 166 ~~------~~~~~~~~v~VvG~G~sg~d~a~~l~~~-~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
.. .....+++|+|||+|++|+|+|..+.+. + ++|+++.|++...+|...
T Consensus 655 L~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~----------------------- 711 (1019)
T PRK09853 655 LEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWR----------------------- 711 (1019)
T ss_pred HHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccH-----------------------
Confidence 11 1123589999999999999999998887 4 589999998743333210
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecC-Cceeee--CC--eEEecCCceeeccEEEE
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNLN--GN--IVHFVDDTHIEVDTIIY 312 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~v~~~~--~~--~v~~~dG~~~~~D~vi~ 312 (433)
...+. ... .|+. .............+++.... .+...+ +. .+...++.++++|.||+
T Consensus 712 eEle~---Ale-----eGVe----------~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIv 773 (1019)
T PRK09853 712 EEYEE---ALE-----DGVE----------FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVIT 773 (1019)
T ss_pred HHHHH---HHH-----cCCE----------EEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEE
Confidence 01111 110 0110 00000000000112222100 000111 11 12233456799999999
Q ss_pred ccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhhcCCCc
Q psy2398 313 ATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKG 385 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~ 385 (433)
|+|++|+.+++...++..+ .+++.+ +..+.++.|+||++||+...+..+..|..||+.+|.+|.+....+..
T Consensus 774 AIG~~Pntelle~~GL~ld~~G~I~V-DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~~~~~ 846 (1019)
T PRK09853 774 AIGEQVDTELLKANGIPLDKKGWPVV-DANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREGIRSH 846 (1019)
T ss_pred CCCCcCChhHHHhcCccccCCCCEEe-CCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 9999999998875555443 355555 44567889999999999876777788999999999999987664443
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-29 Score=240.92 Aligned_cols=307 Identities=13% Similarity=0.105 Sum_probs=188.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 82 (433)
++|++|||||++|..+|.. ..|.+|+++|+ ..+||+|.+.. |.|+..+....... ....+...... ..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~G----CiPsK~l~~~a~~~~~~~~~~~~g~~~~~-~~ 73 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVG----CIPTKMFVYAAEVAQSIGESARLGIDAEI-DS 73 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccC----ccchHHHHHHHHHHHHHHHhhccCeeCCC-Cc
Confidence 5899999999999998654 46999999998 46999999874 34443322211110 11111111000 01
Q ss_pred CCHHHHHHHHHH-HHHHc-CCCcceEeC---cEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCC
Q psy2398 83 PNHSMMLDYLRS-YAKKF-DVYNHSIFN---TEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY 154 (433)
Q Consensus 83 ~~~~~~~~~l~~-~~~~~-~~~~~i~~~---~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~ 154 (433)
.....+.++... ..+.. .......+. ..|+-+... .+.++|.+.++.++.||+||+|||+ .|..|++.+.
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs--~p~~p~~~~~ 151 (452)
T TIGR03452 74 VRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGS--RPYIPPAIAD 151 (452)
T ss_pred cCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECC--CCCCCCCCCC
Confidence 234444444433 22211 000001110 122222211 3445677777778999999999998 7787764431
Q ss_pred CCC-ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCc
Q psy2398 155 FSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 233 (433)
Q Consensus 155 ~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 233 (433)
.+ .+..+.+...... .+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.. ++.. +.
T Consensus 152 -~~~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l-l~~~-------------d~----- 210 (452)
T TIGR03452 152 -SGVRYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL-LRHL-------------DE----- 210 (452)
T ss_pred -CCCEEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc-cccc-------------CH-----
Confidence 12 1222222222112 3689999999999999999999999999999987642 2211 01
Q ss_pred hHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC--eEEecCCceeeccE
Q psy2398 234 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN--IVHFVDDTHIEVDT 309 (433)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~--~v~~~dG~~~~~D~ 309 (433)
...+.+.+... .++ .+.....+.+++ +. .+.+.+|+++++|.
T Consensus 211 ----~~~~~l~~~~~-----~gI-------------------------~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~ 256 (452)
T TIGR03452 211 ----DISDRFTEIAK-----KKW-------------------------DIRLGRNVTAVEQDGDGVTLTLDDGSTVTADV 256 (452)
T ss_pred ----HHHHHHHHHHh-----cCC-------------------------EEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCE
Confidence 11111111110 011 233344455554 22 35567888899999
Q ss_pred EEEccCCCCCCCCCCcc--cccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 310 IIYATGYNRHFPFIDKE--KLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~--~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
||+|+|++|+.++++.+ ++.. +.+.+.+++++ .|+.|+||++|||.....+.+.|..||+.+|++|.+.
T Consensus 257 vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 257 LLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG-RTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred EEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCc-ccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 99999999999987533 3444 34557666654 6999999999999987778889999999999999875
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=242.44 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=186.7
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCc----ccCCCCCCCCC-CCCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFN----TQVPDYPMPDN-YPVYP 83 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~ 83 (433)
+|+||||||+|+++|..+++.|.+|+++|+. .+||+|.+.. |.|+..+...... .....+..... .....
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 76 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEG----CMPTKSLLESAEVHDKVKKANHFGITLPNGSISI 76 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCc----cccchHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence 7999999999999999999999999999986 5899888763 3443322111000 00011111100 00012
Q ss_pred CHHHHHHHHHHHHHH-----------cCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKK-----------FDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
....+.++..+..+. .++ .+ +..++..+ +.+.+.|+..++ .++.||+||+|||+ .|..|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~a~~~--~~~~v~v~~~~~~~~~~~d~lviATGs--~p~~~p~ 149 (458)
T PRK06912 77 DWKQMQARKSQIVTQLVQGIQYLMKKNKI--KV-IQGKASFE--TDHRVRVEYGDKEEVVDAEQFIIAAGS--EPTELPF 149 (458)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCc--EE-EEEEEEEc--cCCEEEEeeCCCcEEEECCEEEEeCCC--CCCCCCC
Confidence 233333333332222 222 11 11222222 245666766555 36899999999998 6777766
Q ss_pred CCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhc
Q psy2398 152 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 231 (433)
Q Consensus 152 ~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 231 (433)
++.....++++.+...... .+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.. +|.. + .
T Consensus 150 ~~~~~~~v~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l-l~~~----d---------~--- 211 (458)
T PRK06912 150 APFDGKWIINSKHAMSLPS-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL-LPGE----D---------E--- 211 (458)
T ss_pred CCCCCCeEEcchHHhCccc-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc-Cccc----c---------H---
Confidence 6511112444433332222 3578999999999999999999999999999987642 2211 0 0
Q ss_pred CchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeEEec-CCc--eee
Q psy2398 232 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIVHFV-DDT--HIE 306 (433)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v~~~-dG~--~~~ 306 (433)
.+.+.+.+.+. ..++ ++.....+.+++. ..+.+. +|. +++
T Consensus 212 ------e~~~~l~~~L~----~~GI-------------------------~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~ 256 (458)
T PRK06912 212 ------DIAHILREKLE----NDGV-------------------------KIFTGAALKGLNSYKKQALFEYEGSIQEVN 256 (458)
T ss_pred ------HHHHHHHHHHH----HCCC-------------------------EEEECCEEEEEEEcCCEEEEEECCceEEEE
Confidence 11111111111 1111 2333445666643 234443 443 589
Q ss_pred ccEEEEccCCCCCCCCCC--cccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 307 VDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 307 ~D~vi~atG~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+|.||+|||++|+..++. ...+....+++.+++. +.++.||||++||+.....+.+.|..|++.+|.++.|.
T Consensus 257 ~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~-~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 257 AEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEH-MQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred eCEEEEecCCccCCCCCCchhcCceecCCCEEeCCC-eecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999999999999988754 3334444445666554 46889999999999876677889999999999999875
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=239.22 Aligned_cols=277 Identities=21% Similarity=0.272 Sum_probs=181.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||++|+++|..|++.|++|++||+.+.+||.+.+..+ .+...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip-----------------------------~~~~~ 189 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIP-----------------------------EFRLP 189 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCC-----------------------------CccCC
Confidence 4579999999999999999999999999999999989887655310 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.++....++++++ .+++++.+.. .+++.+. ...||+||+|||+. .|+.++++| ...+ +++..+
T Consensus 190 ~~~~~~~~~~l~~~gv--~~~~~~~v~~--------~v~~~~~-~~~~d~vvlAtGa~-~~~~~~i~G~~~~g-v~~~~~ 256 (457)
T PRK11749 190 KDIVDREVERLLKLGV--EIRTNTEVGR--------DITLDEL-RAGYDAVFIGTGAG-LPRFLGIPGENLGG-VYSAVD 256 (457)
T ss_pred HHHHHHHHHHHHHcCC--EEEeCCEECC--------ccCHHHH-HhhCCEEEEccCCC-CCCCCCCCCccCCC-cEEHHH
Confidence 4556666666777776 4777766521 1222222 26899999999984 466677887 3222 222211
Q ss_pred CCC--------CCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhhchhhcCchH
Q psy2398 165 YKS--------PDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 235 (433)
Q Consensus 165 ~~~--------~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~ 235 (433)
+.. .....+++|+|||+|.+|+|+|..+.+.+. +|+++.|++...+|.. .
T Consensus 257 ~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~--------------~------- 315 (457)
T PRK11749 257 FLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS--------------E------- 315 (457)
T ss_pred HHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC--------------H-------
Confidence 111 111358999999999999999999999876 8999998764333211 0
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEEe-----------
Q psy2398 236 TMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVHF----------- 299 (433)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~~----------- 299 (433)
...+.+. ..++ .+.....+.++.+. +|.+
T Consensus 316 --~~~~~~~--------~~GV-------------------------~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~ 360 (457)
T PRK11749 316 --EEVEHAK--------EEGV-------------------------EFEWLAAPVEILGDEGRVTGVEFVRMELGEPDAS 360 (457)
T ss_pred --HHHHHHH--------HCCC-------------------------EEEecCCcEEEEecCCceEEEEEEEEEecCcCCC
Confidence 1111100 0111 11122223333211 1222
Q ss_pred --------cCCceeeccEEEEccCCCCCCCCCCc-ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 300 --------VDDTHIEVDTIIYATGYNRHFPFIDK-EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 300 --------~dG~~~~~D~vi~atG~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
.++.++++|.||+|+|++|+..++.. ..+.. ..+.+.+++..+.|+.|+||++||+......+..|..||
T Consensus 361 g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G 440 (457)
T PRK11749 361 GRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDG 440 (457)
T ss_pred CCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHH
Confidence 12346899999999999999776542 23333 345666666467889999999999986556777899999
Q ss_pred HHHHHHHhhhh
Q psy2398 370 QFIRSYIQAFI 380 (433)
Q Consensus 370 ~~~a~~i~g~~ 380 (433)
+.+|.+|...+
T Consensus 441 ~~aA~~I~~~l 451 (457)
T PRK11749 441 KDAAEAIHEYL 451 (457)
T ss_pred HHHHHHHHHHH
Confidence 99998886554
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-28 Score=249.01 Aligned_cols=297 Identities=19% Similarity=0.188 Sum_probs=188.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||||||+||..|++.|++|+|||+.+.+||...+..| .|.-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP-----------------------------~~rlp 355 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIP-----------------------------EFRLP 355 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCC-----------------------------CCcCh
Confidence 3589999999999999999999999999999999999998877622 22223
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.+...+..+.+|+ .++.++.+- ..+++++.....||+||+|||++ .|+.+++|| ...| ++.+.+
T Consensus 356 ~~vi~~~i~~l~~~Gv--~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~-~pr~l~IpG~dl~G-V~~a~d 423 (944)
T PRK12779 356 NQLIDDVVEKIKLLGG--RFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAG-LPTFMNVPGEHLLG-VMSANE 423 (944)
T ss_pred HHHHHHHHHHHHhhcC--eEEEeEEec--------cEEeHHHhccccCCEEEEeCCCC-CCCcCCCCCCcCcC-cEEHHH
Confidence 4555555566677777 466665431 23555554445799999999984 588888988 3333 221111
Q ss_pred CC---------------CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 165 YK---------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 165 ~~---------------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
+. ......||+|+|||+|++|+|+|..+.+.|.+|+++.|++...+| .+
T Consensus 424 fL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp----------------a~ 487 (944)
T PRK12779 424 FLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP----------------AR 487 (944)
T ss_pred HHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccccc----------------cc
Confidence 11 011246899999999999999999999999999999988642222 11
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccC---CCee-ecCCceee-----eCCeEEec
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH---GDIL-PKDDIKNL-----NGNIVHFV 300 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~-~~~~v~~~-----~~~~v~~~ 300 (433)
.. .+.+ ... .|+. ........+...+ +.+. +.....+. ++......
T Consensus 488 ~~------e~~~----a~e-----eGV~----------~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~ 542 (944)
T PRK12779 488 VE------ELHH----ALE-----EGIN----------LAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKP 542 (944)
T ss_pred HH------HHHH----HHH-----CCCE----------EEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeec
Confidence 00 0111 000 0110 0000000111111 0111 00000000 01111112
Q ss_pred CCc--eeeccEEEEccCCCCCCCCCCc-ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHH
Q psy2398 301 DDT--HIEVDTIIYATGYNRHFPFIDK-EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 301 dG~--~~~~D~vi~atG~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i 376 (433)
+|+ ++++|.||+|+|++|+..+... ..+.. ..+.+.+++..+.|+.|+||++||+...+..+..|..+++.+|..|
T Consensus 543 ~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I 622 (944)
T PRK12779 543 TGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEI 622 (944)
T ss_pred CCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHH
Confidence 343 5899999999999998654322 12333 3355666666678999999999999986667788999999999999
Q ss_pred hhhhcCCC
Q psy2398 377 QAFIRKSK 384 (433)
Q Consensus 377 ~g~~~lp~ 384 (433)
...+.+..
T Consensus 623 ~~~L~~~~ 630 (944)
T PRK12779 623 VGEIPFTP 630 (944)
T ss_pred HHHhcccc
Confidence 88766543
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=241.36 Aligned_cols=291 Identities=19% Similarity=0.215 Sum_probs=177.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+||||||+||+||..|++.|++|+|||+.+.+||...+..| .+....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP-----------------------------~~rlp~ 587 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIP-----------------------------EFRISA 587 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeeccc-----------------------------ccCCCH
Confidence 479999999999999999999999999999999999988755411 111112
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK 166 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~ 166 (433)
+..+...+.+..+++ .+++++.. .++..+.....||+||+|||++ .+..+.++|.-. .++.+.++.
T Consensus 588 e~l~~~ie~l~~~GV--e~~~g~~~----------d~~ve~l~~~gYDaVIIATGA~-~~~~l~I~G~~~-~v~~avefL 653 (1012)
T TIGR03315 588 ESIQKDIELVKFHGV--EFKYGCSP----------DLTVAELKNQGYKYVILAIGAW-KHGPLRLEGGGE-RVLKSLEFL 653 (1012)
T ss_pred HHHHHHHHHHHhcCc--EEEEeccc----------ceEhhhhhcccccEEEECCCCC-CCCCCCcCCCCc-ceeeHHHHH
Confidence 333333344555666 35555321 0112222235699999999984 344556776211 122211111
Q ss_pred ----C--CCCCCCCeEEEEcCCCCHHHHHHHHhcc-C-CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHH
Q psy2398 167 ----S--PDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 238 (433)
Q Consensus 167 ----~--~~~~~~~~v~VvG~G~sg~d~a~~l~~~-~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 238 (433)
. .....+++|+|||+|++|+|+|..+.+. | ++|+++.|+....+|... . .
T Consensus 654 ~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~-------------e---------E 711 (1012)
T TIGR03315 654 RAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASR-------------E---------E 711 (1012)
T ss_pred HHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCH-------------H---------H
Confidence 1 1123589999999999999999998876 5 589999988643333110 0 1
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecC-Cceee--eCCeEEecCCc--eeeccEEEEc
Q psy2398 239 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNL--NGNIVHFVDDT--HIEVDTIIYA 313 (433)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~v~~~--~~~~v~~~dG~--~~~~D~vi~a 313 (433)
+.+ ... .|+. + ..... ...+..+++++.. .+... ++......+|+ ++++|.||+|
T Consensus 712 l~~----ale-----eGVe-----~-----~~~~~-p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvA 771 (1012)
T TIGR03315 712 LEE----ALE-----DGVD-----F-----KELLS-PESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAA 771 (1012)
T ss_pred HHH----HHH-----cCCE-----E-----EeCCc-eEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEe
Confidence 111 111 0110 0 00000 0001112222110 00000 11112223454 5899999999
Q ss_pred cCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhhcC
Q psy2398 314 TGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRK 382 (433)
Q Consensus 314 tG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~l 382 (433)
+|++|+..+++...+.. ..+.+.++.....++.|+||++||+...+..+..|..||+.+|..|.++...
T Consensus 772 iG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 772 VGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREGL 841 (1012)
T ss_pred cCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccccC
Confidence 99999998887555554 3356666665578899999999999876777888999999999999876544
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=227.25 Aligned_cols=283 Identities=18% Similarity=0.227 Sum_probs=183.6
Q ss_pred cEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+|+|||||++|+.+|..|.++ +.+|+|||+++.. . |... + +....+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~--------~~~~----------~-----~~~~~g~~~~ 53 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----P--------YSGM----------L-----PGMIAGHYSL 53 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----c--------ccch----------h-----hHHHheeCCH
Confidence 589999999999999999643 6799999987642 0 1100 0 0000011223
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccC--
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSM-- 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~-- 163 (433)
.++...+.++++++++ ++. ..+|+.|+.+.+ +|.+.+++++.||+||+|||+ .|..|+++|.-. .+....
T Consensus 54 ~~~~~~~~~~~~~~gv--~~~-~~~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~--~~~~~~i~g~~~-~~~~~~~~ 125 (364)
T TIGR03169 54 DEIRIDLRRLARQAGA--RFV-IAEATGIDPDRR--KVLLANRPPLSYDVLSLDVGS--TTPLSGVEGAAD-LAVPVKPI 125 (364)
T ss_pred HHhcccHHHHHHhcCC--EEE-EEEEEEEecccC--EEEECCCCcccccEEEEccCC--CCCCCCCCcccc-cccccCCH
Confidence 4455556666777776 344 358999987544 677788878999999999998 888888888111 111000
Q ss_pred ----C----CCCC-C-CCCCCeEEEEcCCCCHHHHHHHHhcc----C--CcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 164 ----D----YKSP-D-QIRNKRVLVVGAGNSGCDIAVDASHH----S--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 164 ----~----~~~~-~-~~~~~~v~VvG~G~sg~d~a~~l~~~----~--~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
. +... . ...+++++|||+|.+|+|+|.+|.+. + .+|+++ +.+. +++.. +
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~-~l~~~-------------~ 190 (364)
T TIGR03169 126 ENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGAS-LLPGF-------------P 190 (364)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCc-ccccC-------------C
Confidence 0 0000 0 12357999999999999999999853 3 479888 4332 22211 1
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeec
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEV 307 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~ 307 (433)
..+.. .+.+. +. ..++ ++.....++++++..+.+.+|.++++
T Consensus 191 ~~~~~-----~~~~~----l~----~~gV-------------------------~v~~~~~v~~i~~~~v~~~~g~~i~~ 232 (364)
T TIGR03169 191 AKVRR-----LVLRL----LA----RRGI-------------------------EVHEGAPVTRGPDGALILADGRTLPA 232 (364)
T ss_pred HHHHH-----HHHHH----HH----HCCC-------------------------EEEeCCeeEEEcCCeEEeCCCCEEec
Confidence 11111 11111 11 1111 23334567777777889999999999
Q ss_pred cEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc-----CChhhHHHHHHHHHHHHHhhhh
Q psy2398 308 DTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA-----AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 308 D~vi~atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~-----~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
|.||+|+|.+|+ +++....+.. +.+++.+++.+..+++||||++|||+.. +.....|..||+.+|++|....
T Consensus 233 D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 233 DAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred CEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence 999999999998 5555444444 3466777766555589999999999853 2245578999999998886554
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=243.73 Aligned_cols=293 Identities=18% Similarity=0.232 Sum_probs=178.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+|++||..|++.|++|+|||+.+.+||.+.+..| ++ ...
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip--------------------~~---------rlp 480 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIP--------------------EF---------RLP 480 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCC--------------------CC---------CCC
Confidence 4579999999999999999999999999999998889988766411 11 111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 165 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~ 165 (433)
.++.+...+.++++++ .++.++.+. . .+++++.....||+||+|||++ .|+.|++||.....++++.++
T Consensus 481 ~~~~~~~~~~l~~~gv--~~~~~~~v~------~--~v~~~~l~~~~ydavvlAtGa~-~~~~l~ipG~~~~gV~~~~~~ 549 (752)
T PRK12778 481 KKIVDVEIENLKKLGV--KFETDVIVG------K--TITIEELEEEGFKGIFIASGAG-LPNFMNIPGENSNGVMSSNEY 549 (752)
T ss_pred HHHHHHHHHHHHHCCC--EEECCCEEC------C--cCCHHHHhhcCCCEEEEeCCCC-CCCCCCCCCCCCCCcEEHHHH
Confidence 2334444455566777 477676541 1 2333333346799999999983 578888888222222222211
Q ss_pred C-------------CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCc-EEEEEecCceeecccCCCCChhHHhHhhchhhc
Q psy2398 166 K-------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 231 (433)
Q Consensus 166 ~-------------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 231 (433)
. ......+++|+|||+|++|+|+|..+.+.|.+ |+++.|++...+|. ..
T Consensus 550 l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----------------~~- 612 (752)
T PRK12778 550 LTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA----------------RL- 612 (752)
T ss_pred HHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC----------------CH-
Confidence 1 11124689999999999999999999999876 99999886422221 11
Q ss_pred CchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCee-ecC-Cce--ee--eCCe-EEecCC
Q psy2398 232 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDIL-PKD-DIK--NL--NGNI-VHFVDD 302 (433)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~-~~~-~v~--~~--~~~~-v~~~dG 302 (433)
...+... ..++. ........+.. ..|+++ +.. .++ .. ++.. ....+|
T Consensus 613 ------~e~~~~~--------~~GV~----------i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g 668 (752)
T PRK12778 613 ------EEVKHAK--------EEGIE----------FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPG 668 (752)
T ss_pred ------HHHHHHH--------HcCCE----------EEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCC
Confidence 0001100 00110 00000000000 011111 000 000 00 0000 001122
Q ss_pred c--eeeccEEEEccCCCCCCCCCCcc-ccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 303 T--HIEVDTIIYATGYNRHFPFIDKE-KLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 303 ~--~~~~D~vi~atG~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+ ++++|.||+|+|++|+..++... .+..+ .+.+.+++.. .|+.|+||++||+...+..+..|..|++.+|..|..
T Consensus 669 ~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 669 STFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 2 58999999999999998766532 34443 3556665544 789999999999987666778899999999998875
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
.+
T Consensus 748 ~L 749 (752)
T PRK12778 748 YL 749 (752)
T ss_pred Hh
Confidence 43
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-27 Score=220.53 Aligned_cols=288 Identities=20% Similarity=0.217 Sum_probs=178.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
+...++|+|||||++|+.+|..|++.|.+|++||+.+.+||.+....+ . ...
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~--------------------~--------~~~ 66 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIP--------------------E--------FRI 66 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCc--------------------c--------ccc
Confidence 345679999999999999999999999999999999888876543200 0 011
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE----eCCeEEEEEc--cCcEEEeCEEEEccCCCCCCCCCCCCC-CCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ----YEDIWEVELS--NGKKKKYDFIAVCNGAQRVARYPNYSG-YFS 156 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~----~~~~~~v~~~--~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~ 156 (433)
+.+.+...+..+.+ .++ +++.++.+..+.. +.+.+..... ++..+.||+||+|||+. .|..|++|| ...
T Consensus 67 ~~~~~~~~~~~l~~-~~i--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~-~~~~~~ipg~~~~ 142 (352)
T PRK12770 67 PIERVREGVKELEE-AGV--VFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW-KSRKLGIPGEDLP 142 (352)
T ss_pred CHHHHHHHHHHHHh-CCe--EEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC-CCCcCCCCCcccc
Confidence 23444445555444 366 4777877765532 1222322211 11236899999999983 467788887 322
Q ss_pred Cce--------eccCCC--CCC---CCCCCCeEEEEcCCCCHHHHHHHHhccCCc-EEEEEecCceeecccCCCCChhHH
Q psy2398 157 GEI--------LHSMDY--KSP---DQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 157 g~~--------~~~~~~--~~~---~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
+.. +++... ... ..+.+++++|||+|.+|+|+|..|...+.+ |+++.|++.+..+.
T Consensus 143 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~---------- 212 (352)
T PRK12770 143 GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPA---------- 212 (352)
T ss_pred CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCC----------
Confidence 211 111111 111 134588999999999999999999888876 99999875321110
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEE
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVH 298 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~ 298 (433)
.. ...+.+. ..++ .+.....+.++.++ .|.
T Consensus 213 --------~~-----~~~~~l~--------~~gi-------------------------~i~~~~~v~~i~~~~~~~~v~ 246 (352)
T PRK12770 213 --------GK-----YEIERLI--------ARGV-------------------------EFLELVTPVRIIGEGRVEGVE 246 (352)
T ss_pred --------CH-----HHHHHHH--------HcCC-------------------------EEeeccCceeeecCCcEeEEE
Confidence 00 1111111 0111 01111112222110 011
Q ss_pred ------------------e--cCCceeeccEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEcccc
Q psy2398 299 ------------------F--VDDTHIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVN 356 (433)
Q Consensus 299 ------------------~--~dG~~~~~D~vi~atG~~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~ 356 (433)
. .++.++++|.||+|+|++|+..+... ..+..+ .+.+.++.. ..++.|+||++||++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~vyaiGD~~ 325 (352)
T PRK12770 247 LAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-HMTSREGVFAAGDVV 325 (352)
T ss_pred EEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-cccCCCCEEEEcccc
Confidence 1 12346899999999999999877654 333332 345555554 467899999999998
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 357 AAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 357 ~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
..+..+..|..||+.+|.+|...+
T Consensus 326 ~~~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 326 TGPSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHH
Confidence 766778889999999999987654
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-27 Score=235.44 Aligned_cols=291 Identities=19% Similarity=0.218 Sum_probs=179.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+..+ .+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip-----------------------------~~~~~ 242 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIP-----------------------------RFRLP 242 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCC-----------------------------CCCCC
Confidence 3479999999999999999999999999999999999998866411 11122
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.+...+.+..+++ ++++++.+. + .++..+. ...||.||+|||++ .+..++++| ...+ +++...
T Consensus 243 ~~~~~~~~~~l~~~Gv--~i~~~~~v~-~-------dv~~~~~-~~~~DaVilAtGa~-~~~~~~ipG~~~~g-v~~~~~ 309 (652)
T PRK12814 243 ESVIDADIAPLRAMGA--EFRFNTVFG-R-------DITLEEL-QKEFDAVLLAVGAQ-KASKMGIPGEELPG-VISGID 309 (652)
T ss_pred HHHHHHHHHHHHHcCC--EEEeCCccc-C-------ccCHHHH-HhhcCEEEEEcCCC-CCCCCCCCCcCcCC-cEeHHH
Confidence 3444444555666776 477776541 1 1222221 23599999999984 234567777 3333 221111
Q ss_pred C-----CCCCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHH
Q psy2398 165 Y-----KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 238 (433)
Q Consensus 165 ~-----~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 238 (433)
+ .......+++|+|||+|++|+|+|..+.+.+. +|+++.|++...+|... . .
T Consensus 310 ~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~-------------~---------e 367 (652)
T PRK12814 310 FLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANR-------------A---------E 367 (652)
T ss_pred HHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH-------------H---------H
Confidence 1 11123568999999999999999999998864 69999988743333210 0 1
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhccc-CCCeeecC-Ccee--ee--CC-eEEecCCc--eeeccE
Q psy2398 239 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG-HGDILPKD-DIKN--LN--GN-IVHFVDDT--HIEVDT 309 (433)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~-~v~~--~~--~~-~v~~~dG~--~~~~D~ 309 (433)
+.+. .. .|+. ...+........ .+.+.+.. .++. .+ +. .....+|+ ++++|.
T Consensus 368 i~~a----~~-----eGV~----------i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~ 428 (652)
T PRK12814 368 IEEA----LA-----EGVS----------LRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADT 428 (652)
T ss_pred HHHH----HH-----cCCc----------EEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCE
Confidence 1111 00 0110 000000000000 11111000 0000 00 00 01122343 489999
Q ss_pred EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 310 IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
||+|+|+.|+..+++...+..+ .+.+.++...+.++.|+||++||+...+..+..|..||+.+|.+|...
T Consensus 429 VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~ 499 (652)
T PRK12814 429 VISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLF 499 (652)
T ss_pred EEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876555553 356777777788999999999999876667778888888888877433
|
|
| >KOG0404|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=191.50 Aligned_cols=281 Identities=19% Similarity=0.231 Sum_probs=195.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+.+|+|||+||++.+||+++++..++-++||--- .|| .-++-.+.+...+..|+.|| +-...
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~~----------i~pGGQLtTTT~veNfPGFP------dgi~G 69 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-ANG----------IAPGGQLTTTTDVENFPGFP------DGITG 69 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeee-ccC----------cCCCceeeeeeccccCCCCC------ccccc
Confidence 45689999999999999999999999999999421 111 12223333333334444332 23346
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC----CCCCceec
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG----YFSGEILH 161 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g----~~~g~~~~ 161 (433)
.++.+-+++.+.++|.+ .+...|.+++.....|.+.++.+ .+.+|.||+|||+ ..+...+|| .|..+-+.
T Consensus 70 ~~l~d~mrkqs~r~Gt~---i~tEtVskv~~sskpF~l~td~~-~v~~~avI~atGA--sAkRl~~pg~ge~~fWqrGiS 143 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTE---IITETVSKVDLSSKPFKLWTDAR-PVTADAVILATGA--SAKRLHLPGEGEGEFWQRGIS 143 (322)
T ss_pred HHHHHHHHHHHHhhcce---eeeeehhhccccCCCeEEEecCC-ceeeeeEEEeccc--ceeeeecCCCCcchHHhcccc
Confidence 89999999999999973 44567889988888899988654 6999999999999 666666666 36677788
Q ss_pred cCCCCCCCC--CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 162 SMDYKSPDQ--IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 162 ~~~~~~~~~--~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
++..++... |++|.++|||||.||+|-|..|.+.+++|++++|+.++... +.
T Consensus 144 aCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs--------------------------~~ 197 (322)
T KOG0404|consen 144 ACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS--------------------------KI 197 (322)
T ss_pred hhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH--------------------------HH
Confidence 888888875 89999999999999999999999999999999999864222 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEEccCCCCC
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRH 319 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~ 319 (433)
+ .++...++.- ....+....+++..+++.-.-.| +.+...+-+.++++-++++.|-.|+
T Consensus 198 M---q~ra~~npnI-------------~v~~nt~~~ea~gd~~~l~~l~i-----kn~~tge~~dl~v~GlFf~IGH~Pa 256 (322)
T KOG0404|consen 198 M---QQRAEKNPNI-------------EVLYNTVAVEALGDGKLLNGLRI-----KNVKTGEETDLPVSGLFFAIGHSPA 256 (322)
T ss_pred H---HHHHhcCCCe-------------EEEechhhhhhccCcccccceEE-----EecccCcccccccceeEEEecCCch
Confidence 1 1111111100 01112222333333221110011 1111122245899999999999999
Q ss_pred CCCCCcccccc-cCCccccccccccCCCCcEEEEccccc
Q psy2398 320 FPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNA 357 (433)
Q Consensus 320 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~ 357 (433)
+.||+. .++. ..+++....+...+++|++|++||++.
T Consensus 257 t~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 257 TKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred hhHhcC-ceeeccCceEEeccCcccccccceeeccccch
Confidence 999985 4444 445666666788899999999999985
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=234.14 Aligned_cols=293 Identities=19% Similarity=0.219 Sum_probs=178.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+||||||+||++|..|++.|++|+|||+.+.+||...+..| .+....
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip-----------------------------~~rl~~ 480 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIP-----------------------------SFRLPR 480 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCC-----------------------------ccCCCH
Confidence 479999999999999999999999999999999999887665411 122234
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 165 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~ 165 (433)
++.+...+....+|+ ++++++.+ . . .++..+- ....||+||+|||++ .|+.+++||...+.+++..++
T Consensus 481 e~~~~~~~~l~~~Gv--~~~~~~~v-g-----~--~~~~~~l~~~~~yDaViIATGa~-~pr~l~IpG~~l~gV~~a~~f 549 (1006)
T PRK12775 481 DIIDREVQRLVDIGV--KIETNKVI-G-----K--TFTVPQLMNDKGFDAVFLGVGAG-APTFLGIPGEFAGQVYSANEF 549 (1006)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCcc-C-----C--ccCHHHHhhccCCCEEEEecCCC-CCCCCCCCCcCCCCcEEHHHH
Confidence 555556666777787 47777543 1 1 1221111 124699999999984 478888998322333333211
Q ss_pred --------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 166 --------------KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 166 --------------~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
.+.....+|+|+|||+|++|+|+|..+.+.|. +|+++.|+....+|. ..
T Consensus 550 L~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a----------------~~ 613 (1006)
T PRK12775 550 LTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPA----------------RI 613 (1006)
T ss_pred HHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCC----------------CH
Confidence 11223468999999999999999999998865 588888876432221 10
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCeee-cC-C--ceeee--CCeEEecCC
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILP-KD-D--IKNLN--GNIVHFVDD 302 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~-~~-~--v~~~~--~~~v~~~dG 302 (433)
...+... ..|+. ........+.. .+|+++- .- . ....+ +...-..+|
T Consensus 614 -------~e~~~a~--------eeGI~----------~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g 668 (1006)
T PRK12775 614 -------EEIRHAK--------EEGID----------FFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTG 668 (1006)
T ss_pred -------HHHHHHH--------hCCCE----------EEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCC
Confidence 0001000 00110 00000001111 0122210 00 0 00000 100001123
Q ss_pred c--eeeccEEEEccCCCCCCCCCCc-cccccc-CCcccccc----ccccCCCCcEEEEccccccCChhhHHHHHHHHHHH
Q psy2398 303 T--HIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFI----HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 374 (433)
Q Consensus 303 ~--~~~~D~vi~atG~~~~~~~l~~-~~~~~~-~~~~~~~~----~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~ 374 (433)
+ ++++|.||+|+|++|+..++.. ..+..+ .+.+.+++ ..+.|+.|+||++||+...+..+..|..+++.+|.
T Consensus 669 ~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~ 748 (1006)
T PRK12775 669 EFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAAR 748 (1006)
T ss_pred ceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHH
Confidence 3 5899999999999999776543 233332 34444443 36789999999999998766777788899999888
Q ss_pred HHhhhh
Q psy2398 375 YIQAFI 380 (433)
Q Consensus 375 ~i~g~~ 380 (433)
.|...+
T Consensus 749 ~I~~~L 754 (1006)
T PRK12775 749 SIATYL 754 (1006)
T ss_pred HHHHHH
Confidence 875543
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=211.21 Aligned_cols=291 Identities=18% Similarity=0.234 Sum_probs=175.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+|+++|..|++.|++|+++|+.+.+||.+.+..+ .+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip-----------------------------~~~~~ 190 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIP-----------------------------SFKLD 190 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCc-----------------------------cccCC
Confidence 3478999999999999999999999999999999999987765411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccC-
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM- 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~- 163 (433)
.++.+...+.++.+|+ .+++++.|.. .++..+ ....||.||+|||+.. +..++++| ...+ +.+..
T Consensus 191 ~~~~~~~~~~~~~~Gv--~~~~~~~v~~--------~~~~~~-~~~~~D~vilAtGa~~-~~~~~i~g~~~~g-V~~a~~ 257 (467)
T TIGR01318 191 KAVLSRRREIFTAMGI--EFHLNCEVGR--------DISLDD-LLEDYDAVFLGVGTYR-SMRGGLPGEDAPG-VLQALP 257 (467)
T ss_pred HHHHHHHHHHHHHCCC--EEECCCEeCC--------ccCHHH-HHhcCCEEEEEeCCCC-CCcCCCCCcCCCC-cEEHHH
Confidence 3455666667778887 5777876622 111111 1247999999999842 23456777 3222 21110
Q ss_pred ----------CCC-----CCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 164 ----------DYK-----SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 164 ----------~~~-----~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
... ......+++++|||+|.+|+|.|..+.+.+ ++||+++|++...+|...
T Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~------------- 324 (467)
T TIGR01318 258 FLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSR------------- 324 (467)
T ss_pred HHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCH-------------
Confidence 000 111246899999999999999999998887 579999998754333210
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhccc--CCCee---ec-CCceeeeCCe---EE
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG--HGDIL---PK-DDIKNLNGNI---VH 298 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~---~~-~~v~~~~~~~---v~ 298 (433)
...+... ..|+. ...+....+... .+++. +. ......+.++ ..
T Consensus 325 ----------~e~~~~~--------~~GV~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~ 376 (467)
T TIGR01318 325 ----------REVANAR--------EEGVE----------FLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPV 376 (467)
T ss_pred ----------HHHHHHH--------hcCCE----------EEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccce
Confidence 1111100 01110 000000000000 11111 00 0000000000 00
Q ss_pred ecCC--ceeeccEEEEccCCCCCC-CCCCccccccc-CCcccccc---ccccCCCCcEEEEccccccCChhhHHHHHHHH
Q psy2398 299 FVDD--THIEVDTIIYATGYNRHF-PFIDKEKLEWK-LGIPDLFI---HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQF 371 (433)
Q Consensus 299 ~~dG--~~~~~D~vi~atG~~~~~-~~l~~~~~~~~-~~~~~~~~---~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~ 371 (433)
..+| .++++|.||+|+|++|+. .++....+..+ .+.+.++. ..+.++.|+||++||+......+..|..||+.
T Consensus 377 ~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~ 456 (467)
T TIGR01318 377 PVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQ 456 (467)
T ss_pred ecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHH
Confidence 1122 358999999999999984 56654444443 34454442 34578899999999998766677789999999
Q ss_pred HHHHHhhh
Q psy2398 372 IRSYIQAF 379 (433)
Q Consensus 372 ~a~~i~g~ 379 (433)
+|.+|..-
T Consensus 457 aA~~i~~~ 464 (467)
T TIGR01318 457 AAQGILDW 464 (467)
T ss_pred HHHHHHHH
Confidence 99988654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=221.04 Aligned_cols=293 Identities=18% Similarity=0.225 Sum_probs=176.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+..+ .+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip-----------------------------~~~l~ 376 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIP-----------------------------AFKLD 376 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCC-----------------------------CccCC
Confidence 3579999999999999999999999999999999999998776411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCcee----
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL---- 160 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~---- 160 (433)
.++.+...+.++.+|+ .+++++.|.. .++..+ ....||.||+|||++ .+..+.++| ...|...
T Consensus 377 ~~~~~~~~~~~~~~Gv--~~~~~~~v~~--------~i~~~~-~~~~~DavilAtGa~-~~~~l~i~g~~~~Gv~~a~~~ 444 (654)
T PRK12769 377 KSLLARRREIFSAMGI--EFELNCEVGK--------DISLES-LLEDYDAVFVGVGTY-RSMKAGLPNEDAPGVYDALPF 444 (654)
T ss_pred HHHHHHHHHHHHHCCe--EEECCCEeCC--------cCCHHH-HHhcCCEEEEeCCCC-CCCCCCCCCCCCCCeEEhHHH
Confidence 3344444556677777 4777776521 111111 124799999999985 344556666 3333110
Q ss_pred ------ccCCCC---C--CCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 161 ------HSMDYK---S--PDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 161 ------~~~~~~---~--~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
+..... . ...+.+++|+|||+|.+|+|+|..+.+.+ ++|+++.|++...+|.. +
T Consensus 445 l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~----~---------- 510 (654)
T PRK12769 445 LIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGS----K---------- 510 (654)
T ss_pred HHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCC----H----------
Confidence 000010 0 01356899999999999999999988886 47999998864333311 0
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCee-ecC---Cceeee--CC-eEEe
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDIL-PKD---DIKNLN--GN-IVHF 299 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~-~~~---~v~~~~--~~-~v~~ 299 (433)
...+... ..|+. ...+....+.. ..+++. +.- .....+ +. ....
T Consensus 511 ---------~e~~~~~--------~~Gv~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~ 563 (654)
T PRK12769 511 ---------KEVKNAR--------EEGAN----------FEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVP 563 (654)
T ss_pred ---------HHHHHHH--------HcCCe----------EEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCccee
Confidence 1111111 00110 00000001111 011221 000 000000 00 0111
Q ss_pred cCCc--eeeccEEEEccCCCCCC-CCCCccccccc-CCccccccc---cccCCCCcEEEEccccccCChhhHHHHHHHHH
Q psy2398 300 VDDT--HIEVDTIIYATGYNRHF-PFIDKEKLEWK-LGIPDLFIH---IAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 372 (433)
Q Consensus 300 ~dG~--~~~~D~vi~atG~~~~~-~~l~~~~~~~~-~~~~~~~~~---~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~ 372 (433)
..|+ ++++|.||+|+|++|+. .+++...+..+ .+.+.++.. .+.|+.|+||++||+...+.++..|..||+.+
T Consensus 564 ~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~A 643 (654)
T PRK12769 564 IPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHA 643 (654)
T ss_pred CCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHH
Confidence 1233 58999999999999984 56665555553 344444432 36789999999999987777778899999999
Q ss_pred HHHHhhhh
Q psy2398 373 RSYIQAFI 380 (433)
Q Consensus 373 a~~i~g~~ 380 (433)
|..|..-+
T Consensus 644 A~~I~~~L 651 (654)
T PRK12769 644 AQGIIDWL 651 (654)
T ss_pred HHHHHHHh
Confidence 99987544
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-25 Score=215.76 Aligned_cols=287 Identities=16% Similarity=0.199 Sum_probs=172.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+..+ .+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip-----------------------------~~~~~ 192 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIP-----------------------------DFKLE 192 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCC-----------------------------cccCC
Confidence 3479999999999999999999999999999999999987765411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccC-
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM- 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~- 163 (433)
.++.+...+.+..+++ .+++++.+.. + ++. +.....||.||+|||+. .++.++++| ...+ +.+..
T Consensus 193 ~~~~~~~~~~~~~~gv--~~~~~~~v~~-~-------~~~-~~~~~~~d~vvlAtGa~-~~~~l~ipG~~~~g-V~~~~~ 259 (471)
T PRK12810 193 KEVIDRRIELMEAEGI--EFRTNVEVGK-D-------ITA-EELLAEYDAVFLGTGAY-KPRDLGIPGRDLDG-VHFAMD 259 (471)
T ss_pred HHHHHHHHHHHHhCCc--EEEeCCEECC-c-------CCH-HHHHhhCCEEEEecCCC-CCCcCCCCCccCCC-cEEHHH
Confidence 3344444556667777 4777776521 1 111 11125799999999984 366677887 3332 22110
Q ss_pred ------------CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 164 ------------DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 164 ------------~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
.........+++|+|||+|++|+|+|..+.+.+ ++|+...+.+. |....... . .+|.+.
T Consensus 260 ~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~---~~~~~~~~--~---~~~~~~ 331 (471)
T PRK12810 260 FLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM---PPSRRNKN--N---PWPYWP 331 (471)
T ss_pred HHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC---Cccccccc--c---CCcccc
Confidence 011112356899999999999999999888876 47885443321 11100000 0 000000
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----------CeEEec
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----------NIVHFV 300 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----------~~v~~~ 300 (433)
.. ...+... ..++ .+.....+.++.+ ..+.+.
T Consensus 332 ~~-----~~~~~~~--------~~GV-------------------------~i~~~~~~~~i~~~~g~v~~V~~~~~~~~ 373 (471)
T PRK12810 332 MK-----LEVSNAH--------EEGV-------------------------EREFNVQTKEFEGENGKVTGVKVVRTELG 373 (471)
T ss_pred hH-----HHHHHHH--------HcCC-------------------------eEEeccCceEEEccCCEEEEEEEEEEEec
Confidence 00 0011100 0011 1111222222221 111122
Q ss_pred CC---------ceeeccEEEEccCCCCCC-CCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 301 DD---------THIEVDTIIYATGYNRHF-PFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 301 dG---------~~~~~D~vi~atG~~~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
+| .++++|.||+|+|++|+. .+++...+..+ .+.+.+++..+.++.|+||++||+......+..|..||
T Consensus 374 ~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G 453 (471)
T PRK12810 374 EGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEG 453 (471)
T ss_pred CCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHH
Confidence 22 358999999999999985 46664445443 34555553456789999999999987555667788899
Q ss_pred HHHHHHHhhhh
Q psy2398 370 QFIRSYIQAFI 380 (433)
Q Consensus 370 ~~~a~~i~g~~ 380 (433)
+.+|..|...+
T Consensus 454 ~~AA~~i~~~L 464 (471)
T PRK12810 454 RQAARAIDAYL 464 (471)
T ss_pred HHHHHHHHHHH
Confidence 88888775443
|
|
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=197.66 Aligned_cols=311 Identities=16% Similarity=0.174 Sum_probs=195.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc-CCC-----CCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ-VPD-----YPMPDNY 79 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~ 79 (433)
..+||+|||+||+|..||.+.++.|++.+|+|++..+||+|.... |.|+..+...+.++. ... ....-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvG----cIPSKALL~nSh~yh~~q~~~~~~rGi~vs- 112 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVG----CIPSKALLNNSHLYHEAQHEDFASRGIDVS- 112 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeecc----ccccHHHhhhhHHHHHHhhhHHHhcCcccc-
Confidence 458999999999999999999999999999999999999999873 344443322222221 100 000000
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCcceEeCcEEEEEEEe-----CCeEEEEEccC--cEEEeCEEEEccCCCCCCCCCC
Q psy2398 80 PVYPNHSMMLDYLRSYAKKF--DVYNHSIFNTEVINLEQY-----EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~--~~~~~i~~~~~V~~v~~~-----~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
+--...+.++......++.+ ++. +.+-..+|+.+.-. .+...+...+| ..+.++++|+|||+ .+++
T Consensus 113 ~~~~dl~~~~~~k~~~vk~Lt~gi~-~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGS----eV~~ 187 (506)
T KOG1335|consen 113 SVSLDLQAMMKAKDNAVKQLTGGIE-NLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGS----EVTP 187 (506)
T ss_pred ceecCHHHHHHHHHHHHHHHhhHHH-HHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCC----ccCC
Confidence 11122344444444444443 121 11223345544432 45556665555 35899999999998 5667
Q ss_pred CCC-CCCC-ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 151 YSG-YFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 151 i~g-~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
+|| +..+ .++.|......... .++++|||+|.+|.|+..-+.+.|.+||++.-.+. +.+.
T Consensus 188 ~PGI~IDekkIVSStgALsL~~v-Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~-i~~~---------------- 249 (506)
T KOG1335|consen 188 FPGITIDEKKIVSSTGALSLKEV-PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQ-IGGV---------------- 249 (506)
T ss_pred CCCeEecCceEEecCCccchhhC-cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhh-hccc----------------
Confidence 778 4444 44444444444443 78999999999999999999999999999985443 1111
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC---eEEe---c
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN---IVHF---V 300 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~---~v~~---~ 300 (433)
+.. |..+..++++ .. .++ ...+.+.+...+ +. .|.+ +
T Consensus 250 -mD~--Eisk~~qr~L---~k----Qgi-------------------------kF~l~tkv~~a~~~~dg~v~i~ve~ak 294 (506)
T KOG1335|consen 250 -MDG--EISKAFQRVL---QK----QGI-------------------------KFKLGTKVTSATRNGDGPVEIEVENAK 294 (506)
T ss_pred -cCH--HHHHHHHHHH---Hh----cCc-------------------------eeEeccEEEEeeccCCCceEEEEEecC
Confidence 111 1112222222 11 111 111222222221 11 2222 2
Q ss_pred CCc--eeeccEEEEccCCCCCCCCCCcccccc--c-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 301 DDT--HIEVDTIIYATGYNRHFPFIDKEKLEW--K-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 301 dG~--~~~~D~vi~atG~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
+|+ +++||+++.|+|++|-+.-|+.+.+.. + .+++.+. ..|.+.+|+||+|||+...+.+.+-||.|+..+.+.
T Consensus 295 ~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~ 373 (506)
T KOG1335|consen 295 TGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEG 373 (506)
T ss_pred CCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhhhhchhheee
Confidence 333 489999999999999888777554333 2 3344444 456888999999999999888999999999999999
Q ss_pred Hhhhh
Q psy2398 376 IQAFI 380 (433)
Q Consensus 376 i~g~~ 380 (433)
|.|..
T Consensus 374 i~g~~ 378 (506)
T KOG1335|consen 374 IAGGH 378 (506)
T ss_pred ecccC
Confidence 98773
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-25 Score=213.87 Aligned_cols=231 Identities=17% Similarity=0.230 Sum_probs=157.7
Q ss_pred HHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEE--eCEEEEccCCCCCCCCCCCCCCCCCceeccCCCCCC-
Q psy2398 93 RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKK--YDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSP- 168 (433)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~--~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~~~- 168 (433)
+.+.+++++ +++++++|+.++.+++.+.+...+ +..+. ||+||+|||+ .|+.|+++|.-...+.+.....+.
T Consensus 51 ~~~~~~~gv--~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~--~p~~~~i~G~~~~~v~~~~~~~~~~ 126 (427)
T TIGR03385 51 EVFIKKRGI--DVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGA--SPIVPNIEGINLDIVFTLRNLEDTD 126 (427)
T ss_pred HHHHHhcCC--eEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCC--CCCCCCCCCcCCCCEEEECCHHHHH
Confidence 345577787 477899999998877766665432 34677 9999999998 888899988211222222221111
Q ss_pred ------CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 169 ------DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 169 ------~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
....+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+....+.. +..+.. .+.+
T Consensus 127 ~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~-------------~~~~~~-----~~~~- 187 (427)
T TIGR03385 127 AIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLF-------------DEEMNQ-----IVEE- 187 (427)
T ss_pred HHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcccc-------------CHHHHH-----HHHH-
Confidence 023578999999999999999999999999999998764321110 011111 1111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCe--EEecCCceeeccEEEEccCCCCCC
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI--VHFVDDTHIEVDTIIYATGYNRHF 320 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~--v~~~dG~~~~~D~vi~atG~~~~~ 320 (433)
.+. ..++ ++.....++++.... +.+.+|+++++|.+|+|+|++|+.
T Consensus 188 ---~l~----~~gV-------------------------~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 188 ---ELK----KHEI-------------------------NLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred ---HHH----HcCC-------------------------EEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCH
Confidence 111 1111 233345566665432 367889999999999999999999
Q ss_pred CCCCccccccc-CCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhh
Q psy2398 321 PFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 321 ~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~ 379 (433)
++++...+..+ .+++.+++. +.++.|+||++||+... ...++.|..||+.+|++|.|.
T Consensus 236 ~~l~~~gl~~~~~G~i~vd~~-~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 236 ELAKDSGLKLGETGAIWVNEK-FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred HHHHhcCcccCCCCCEEECCC-cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 88876555553 356666655 56889999999999852 235678999999999999885
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=194.94 Aligned_cols=293 Identities=15% Similarity=0.176 Sum_probs=188.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++++|+|+|+|.+|.+.++.|-..-++|+|+.++..+--+|. .|+. --+-..
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL---------------LpS~------------~vGTve 105 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL---------------LPST------------TVGTVE 105 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec---------------cCCc------------ccccee
Confidence 3568999999999999999999998899999998764311111 1110 012223
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE--ccC----cEEEeCEEEEccCCCCCCCCCCCCC-----
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--SNG----KKKKYDFIAVCNGAQRVARYPNYSG----- 153 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~--~~g----~~~~~d~vIvAtG~~s~p~~p~i~g----- 153 (433)
-..+.+.+...+.+.+.. .-.+..+...|+++.+...+.. .++ -.+.||++|+|+|+ .++.+.+||
T Consensus 106 ~rSIvEPIr~i~r~k~~~-~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA--~~~TFgipGV~e~~ 182 (491)
T KOG2495|consen 106 LRSIVEPIRAIARKKNGE-VKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGA--EPNTFGIPGVEENA 182 (491)
T ss_pred ehhhhhhHHHHhhccCCC-ceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccC--CCCCCCCCchhhch
Confidence 455677777777765432 2334666777877666555442 233 24889999999999 889999998
Q ss_pred CCCCceeccCCCCC-------------C---CCCCCCeEEEEcCCCCHHHHHHHHhcc--------------CCcEEEEE
Q psy2398 154 YFSGEILHSMDYKS-------------P---DQIRNKRVLVVGAGNSGCDIAVDASHH--------------SEKVYHST 203 (433)
Q Consensus 154 ~~~g~~~~~~~~~~-------------~---~~~~~~~v~VvG~G~sg~d~a~~l~~~--------------~~~V~~~~ 203 (433)
.|...+-++..++. . +..+=-+++|||||++|+|+|.+|+.. --+||++.
T Consensus 183 ~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiE 262 (491)
T KOG2495|consen 183 HFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIE 262 (491)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeec
Confidence 34433333333311 0 111123799999999999999999875 12466655
Q ss_pred ecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCe
Q psy2398 204 RRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDI 283 (433)
Q Consensus 204 r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (433)
..+. .+ +++.. ++.+...+.+ .+.++ .+
T Consensus 263 A~d~--------------iL----~mFdk-----rl~~yae~~f----~~~~I-------------------------~~ 290 (491)
T KOG2495|consen 263 AADH--------------IL----NMFDK-----RLVEYAENQF----VRDGI-------------------------DL 290 (491)
T ss_pred cchh--------------HH----HHHHH-----HHHHHHHHHh----hhccc-------------------------ee
Confidence 4432 11 11111 1211111111 11111 34
Q ss_pred eecCCceeeeCCeEEecCC----ceeeccEEEEccCCCCCCCCCCcccccc-c--CCccccccccccCCCCcEEEEcccc
Q psy2398 284 LPKDDIKNLNGNIVHFVDD----THIEVDTIIYATGYNRHFPFIDKEKLEW-K--LGIPDLFIHIAPRNLDNIFFFGFVN 356 (433)
Q Consensus 284 ~~~~~v~~~~~~~v~~~dG----~~~~~D~vi~atG~~~~~~~l~~~~~~~-~--~~~~~~~~~~~~~~~p~i~~iG~~~ 356 (433)
.....|+.++++.++.+++ +++++-+++|+||..+. |+........ + +.++.+++.+..++.+||||||||+
T Consensus 291 ~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca 369 (491)
T KOG2495|consen 291 DTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCA 369 (491)
T ss_pred ecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccc
Confidence 4456688888888887655 56889999999999997 5443211111 1 2356778888889999999999999
Q ss_pred cc---CChhhHHHHHHHHHHHHHhhhh
Q psy2398 357 AA---AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 357 ~~---~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
.. .+..+.|++||.|+|++|.-..
T Consensus 370 ~~~~~~~tAQVA~QqG~yLAk~fn~m~ 396 (491)
T KOG2495|consen 370 DQRGLKPTAQVAEQQGAYLAKNFNKMG 396 (491)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHh
Confidence 43 3567899999999999996544
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=205.96 Aligned_cols=307 Identities=15% Similarity=0.158 Sum_probs=175.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||||++|+++|..|++.|++|++||+.+.+||...+..+ .+....
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip-----------------------------~~~~~~ 193 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIP-----------------------------NMKLDK 193 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCC-----------------------------CccCCH
Confidence 379999999999999999999999999999999988887655411 111123
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCcee-----
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL----- 160 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~----- 160 (433)
++.....+.++.+++ .+++++.|. .+ ++. +.....||.||+|||+. .|..++++| ...+...
T Consensus 194 ~~~~~~~~~~~~~Gv--~~~~~~~v~-~~-------~~~-~~~~~~~d~VilAtGa~-~~~~l~i~G~~~~gV~~~~~~l 261 (485)
T TIGR01317 194 AIVDRRIDLLSAEGI--DFVTNTEIG-VD-------ISA-DELKEQFDAVVLAGGAT-KPRDLPIPGRELKGIHYAMEFL 261 (485)
T ss_pred HHHHHHHHHHHhCCC--EEECCCEeC-Cc-------cCH-HHHHhhCCEEEEccCCC-CCCcCCCCCcCCCCcEeHHHHH
Confidence 344444455666777 477777763 11 111 11235799999999984 377788888 3333111
Q ss_pred ccC--CCC-------CCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 161 HSM--DYK-------SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 161 ~~~--~~~-------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
+.. ... ......+|+|+|||+|++|+|.|..+.+.+ ++|+++.+.+.....+. ... .+|.+-
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~-~~~-------~~~~~~ 333 (485)
T TIGR01317 262 PSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARA-KDN-------PWPEWP 333 (485)
T ss_pred HHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcc-ccc-------CCCccc
Confidence 100 000 011256899999999999999988877765 68999987653210000 000 011110
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccC--CCeeecC--Cce-eeeCCe---EEecCC
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH--GDILPKD--DIK-NLNGNI---VHFVDD 302 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~--~v~-~~~~~~---v~~~dG 302 (433)
.. .+.....+... ...++. . ...+....+.... +++.-.. .++ ..+.++ .....|
T Consensus 334 ~~-~e~~~a~~e~~-------~~~gv~-----~----~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g 396 (485)
T TIGR01317 334 RV-YRVDYAHEEAA-------AHYGRD-----P----REYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPG 396 (485)
T ss_pred hh-hhhHHHHHhhh-------hhcCcc-----c----eEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCC
Confidence 00 00000011100 000000 0 0000001111111 1121000 000 000000 111122
Q ss_pred --ceeeccEEEEccCCC-CCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 303 --THIEVDTIIYATGYN-RHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 303 --~~~~~D~vi~atG~~-~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
.++++|.||+|+|.. |+.++++...+... .+.+...+..+.|+.|+||++||+.........|..|++.+|..|..
T Consensus 397 ~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 397 SEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred ceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 258999999999996 88888876555543 35555556667899999999999987666667788888888887754
Q ss_pred h
Q psy2398 379 F 379 (433)
Q Consensus 379 ~ 379 (433)
.
T Consensus 477 ~ 477 (485)
T TIGR01317 477 Y 477 (485)
T ss_pred H
Confidence 3
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=211.86 Aligned_cols=293 Identities=18% Similarity=0.266 Sum_probs=176.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||++||++|..|++.|++|++||+.+.+||.+.+..+ .+.-.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip-----------------------------~~~l~ 359 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIP-----------------------------PFKLD 359 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCC-----------------------------cccCC
Confidence 3589999999999999999999999999999999999999887622 01111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCcee----
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL---- 160 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~---- 160 (433)
.++.+...+.++.+|+ .+++++++.. .+++.+ ....||.|++|||++ .+..+.++| ...|...
T Consensus 360 ~~~~~~~~~~~~~~Gv--~~~~~~~v~~--------~~~~~~-l~~~~DaV~latGa~-~~~~~~i~g~~~~gv~~a~~~ 427 (639)
T PRK12809 360 KTVLSQRREIFTAMGI--DFHLNCEIGR--------DITFSD-LTSEYDAVFIGVGTY-GMMRADLPHEDAPGVIQALPF 427 (639)
T ss_pred HHHHHHHHHHHHHCCe--EEEcCCccCC--------cCCHHH-HHhcCCEEEEeCCCC-CCCCCCCCCCccCCcEeHHHH
Confidence 3444555566777787 4777776521 111212 235699999999985 344566777 3333211
Q ss_pred ------ccCCCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 161 ------HSMDYKS-----PDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 161 ------~~~~~~~-----~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
....... .....+|+|+|+|+|.+|+|.|..+.+.| ++||++.|++...+|..
T Consensus 428 l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~--------------- 492 (639)
T PRK12809 428 LTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGS--------------- 492 (639)
T ss_pred HHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC---------------
Confidence 0000111 12346899999999999999999888876 58999998864322211
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCeeecC--Cce--ee--eCC-eEEe
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKD--DIK--NL--NGN-IVHF 299 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~--~v~--~~--~~~-~v~~ 299 (433)
.. .+.+ .. ..|+. ........+.. ..|++.... .++ +. ++. ....
T Consensus 493 ----~~---e~~~-a~--------~eGv~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~ 546 (639)
T PRK12809 493 ----RK---EVVN-AR--------EEGVE----------FQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRP 546 (639)
T ss_pred ----HH---HHHH-HH--------HcCCe----------EEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCcccee
Confidence 00 0000 00 00110 00000000000 011221000 000 00 000 0111
Q ss_pred cCC--ceeeccEEEEccCCCCCC-CCCCccccccc-CCcccccc---ccccCCCCcEEEEccccccCChhhHHHHHHHHH
Q psy2398 300 VDD--THIEVDTIIYATGYNRHF-PFIDKEKLEWK-LGIPDLFI---HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 372 (433)
Q Consensus 300 ~dG--~~~~~D~vi~atG~~~~~-~~l~~~~~~~~-~~~~~~~~---~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~ 372 (433)
..| .++++|.||+|+|++|+. .+++...+..+ .+.+.+++ ..+.|+.|+||++||+...+.++..|..||+.+
T Consensus 547 ~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~A 626 (639)
T PRK12809 547 VAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQA 626 (639)
T ss_pred cCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHH
Confidence 122 258999999999999964 56664444443 24444432 246789999999999987667777899999999
Q ss_pred HHHHhhhh
Q psy2398 373 RSYIQAFI 380 (433)
Q Consensus 373 a~~i~g~~ 380 (433)
|..|...+
T Consensus 627 A~~i~~~l 634 (639)
T PRK12809 627 ARDMLTLF 634 (639)
T ss_pred HHHHHHHH
Confidence 98887543
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-25 Score=203.89 Aligned_cols=191 Identities=25% Similarity=0.390 Sum_probs=127.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCcccCCCCCCccccceEeecC--CCcccCCCCCCCCCC----
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGVWNSQASCGRVYPSLHLISP--KFNTQVPDYPMPDNY---- 79 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---- 79 (433)
.+|+++||.||++|+.|..|.+.+ .++..||+++.. .|... .+.++..++.+ +.+..+.+-..+-.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~g----mll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL 75 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPG----MLLPGARMQVSFLKDLVTLRDPTSPFSFLNYL 75 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGG----G--SS-B-SS-TTSSSSTTT-TTSTTSHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCc----cCCCCCccccccccccCcCcCCCCcccHHHHH
Confidence 479999999999999999999986 899999998766 67765 23444444443 233332221111111
Q ss_pred -------------CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC----eEEEEEc----cCcEEEeCEEEE
Q psy2398 80 -------------PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED----IWEVELS----NGKKKKYDFIAV 138 (433)
Q Consensus 80 -------------~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~----~~~v~~~----~g~~~~~d~vIv 138 (433)
..+|++.++.+|+++.+++++. .++++++|+.|++..+ .|+|++. ++.++.++.||+
T Consensus 76 ~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVl 153 (341)
T PF13434_consen 76 HEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVL 153 (341)
T ss_dssp HHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE
T ss_pred HHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEE
Confidence 1568899999999999999874 5999999999998732 5999984 345799999999
Q ss_pred ccCCCCCCCCCCCCCCC--CCceeccCCCCCCC--CCCCCeEEEEcCCCCHHHHHHHHhccCC--cEEEEEecCc
Q psy2398 139 CNGAQRVARYPNYSGYF--SGEILHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRGY 207 (433)
Q Consensus 139 AtG~~s~p~~p~i~g~~--~g~~~~~~~~~~~~--~~~~~~v~VvG~G~sg~d~a~~l~~~~~--~V~~~~r~~~ 207 (433)
|||. .|.+|+....+ ...++|+.++.... ..++++|+|||||.||+|++..|.+.+. +|+++.|++.
T Consensus 154 a~G~--~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 154 ATGG--QPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred CcCC--CCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 9996 89998765522 47899999886553 5678899999999999999999999854 8999999875
|
|
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=193.20 Aligned_cols=261 Identities=18% Similarity=0.227 Sum_probs=176.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
...++|||+|++|..|+..+++.|. +++++-+...+ .+.++ ..+.++....
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----pydr~---~Ls~~~~~~~-------------------- 126 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----PYDRA---RLSKFLLTVG-------------------- 126 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----cccch---hcccceeecc--------------------
Confidence 3679999999999999999999886 67777655432 11100 0011111111
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 164 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~ 164 (433)
.++..-..++.+..++ .+++++.|++++... .+|.+.+|+++.|+++++|||+ .++.|++||.....+ +.
T Consensus 127 -~~~a~r~~e~Yke~gI--e~~~~t~v~~~D~~~--K~l~~~~Ge~~kys~LilATGs--~~~~l~~pG~~~~nv---~~ 196 (478)
T KOG1336|consen 127 -EGLAKRTPEFYKEKGI--ELILGTSVVKADLAS--KTLVLGNGETLKYSKLIIATGS--SAKTLDIPGVELKNV---FY 196 (478)
T ss_pred -ccccccChhhHhhcCc--eEEEcceeEEeeccc--cEEEeCCCceeecceEEEeecC--ccccCCCCCccccce---ee
Confidence 1111111224555666 488899999998744 4788889999999999999999 899999999332222 22
Q ss_pred CCCCCC--------CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHH
Q psy2398 165 YKSPDQ--------IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 236 (433)
Q Consensus 165 ~~~~~~--------~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (433)
+++.++ -.++.|+++|+|..|+|+|.+|...+.+||++++.+. .+|+.. -..+++
T Consensus 197 ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~-~~~~lf------------~~~i~~---- 259 (478)
T KOG1336|consen 197 LREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW-LLPRLF------------GPSIGQ---- 259 (478)
T ss_pred eccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCcc-chhhhh------------hHHHHH----
Confidence 333321 2367899999999999999999999999999998864 334311 011111
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeC------CeEEecCCceeecc
Q psy2398 237 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG------NIVHFVDDTHIEVD 308 (433)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~------~~v~~~dG~~~~~D 308 (433)
. +.+.+.+..|+ ..+.+.++.+ ..|.+.||+++++|
T Consensus 260 -~-----------------------------------~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad 303 (478)
T KOG1336|consen 260 -F-----------------------------------YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD 303 (478)
T ss_pred -H-----------------------------------HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence 1 11122222333 3445555543 24678999999999
Q ss_pred EEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEcccccc
Q psy2398 309 TIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA 358 (433)
Q Consensus 309 ~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~ 358 (433)
.||+++|.+|+++++.......+.|++.++. .+.+++||||++||++..
T Consensus 304 lvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~-~f~t~~~~VyAiGDva~f 352 (478)
T KOG1336|consen 304 LVVVGIGIKPNTSFLEKGILLDSKGGIKVDE-FFQTSVPNVYAIGDVATF 352 (478)
T ss_pred eEEEeeccccccccccccceecccCCEeehh-ceeeccCCcccccceeec
Confidence 9999999999999998633333567777776 458889999999999964
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=209.56 Aligned_cols=275 Identities=21% Similarity=0.252 Sum_probs=173.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+||++|..|++.|++|+++|+.+.+||.+.+..+ .+.-.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip-----------------------------~~~~~ 186 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIP-----------------------------AYRLP 186 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCC-----------------------------CccCC
Confidence 3478999999999999999999999999999999999998765411 11111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEE-EEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEV-INLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~ 163 (433)
.++.+.-.+.+.++++ .+.+++.+ ..+..+ . ....||.||+|||+.. +..+.++| ...+. ++..
T Consensus 187 ~~~~~~~l~~~~~~Gv--~~~~~~~~~~~~~~~---------~-~~~~~D~Vi~AtG~~~-~~~~~i~g~~~~gv-~~~~ 252 (564)
T PRK12771 187 REVLDAEIQRILDLGV--EVRLGVRVGEDITLE---------Q-LEGEFDAVFVAIGAQL-GKRLPIPGEDAAGV-LDAV 252 (564)
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEECCcCCHH---------H-HHhhCCEEEEeeCCCC-CCcCCCCCCccCCc-EEHH
Confidence 2333434445666776 46667655 222110 0 1135899999999842 33445666 22222 1111
Q ss_pred CC-----CCCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 164 DY-----KSPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 164 ~~-----~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
.+ .......+++|+|+|+|.+|+|.+..+.+.+ ++|+++.|.+...+|.. .
T Consensus 253 ~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~----------------~------- 309 (564)
T PRK12771 253 DFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAH----------------D------- 309 (564)
T ss_pred HHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCC----------------H-------
Confidence 11 1113445889999999999999999888886 78999998764222211 0
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----------eEEe----c---
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----------IVHF----V--- 300 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----------~v~~----~--- 300 (433)
...+... . .++ ++.....+.++.+. .+.+ .
T Consensus 310 ~~~~~a~---~-----~GV-------------------------ki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~ 356 (564)
T PRK12771 310 EEIEEAL---R-----EGV-------------------------EINWLRTPVEIEGDENGATGLRVITVEKMELDEDGR 356 (564)
T ss_pred HHHHHHH---H-----cCC-------------------------EEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCC
Confidence 0011000 0 011 11111112222110 0000 1
Q ss_pred ----CC--ceeeccEEEEccCCCCCCCCCCc-ccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHH
Q psy2398 301 ----DD--THIEVDTIIYATGYNRHFPFIDK-EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR 373 (433)
Q Consensus 301 ----dG--~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a 373 (433)
+| .++++|.||+|+|++|+.++++. ..+..+.+.+.++...+.++.|+||++||+...+..+..|..||+.+|
T Consensus 357 ~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA 436 (564)
T PRK12771 357 PSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAA 436 (564)
T ss_pred eeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHH
Confidence 23 35899999999999999888874 334334566777776778999999999999876667778899999988
Q ss_pred HHHhhh
Q psy2398 374 SYIQAF 379 (433)
Q Consensus 374 ~~i~g~ 379 (433)
..|...
T Consensus 437 ~~i~~~ 442 (564)
T PRK12771 437 RNIDAF 442 (564)
T ss_pred HHHHHH
Confidence 887543
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=214.53 Aligned_cols=280 Identities=15% Similarity=0.162 Sum_probs=174.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.+||+||||||+||+||..|++.|++|+|+|+.+.+||.+..... ..+. .+..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~--------------------------~~~g-~~~~ 215 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE--------------------------TIDG-KPAA 215 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc--------------------------ccCC-ccHH
Confidence 479999999999999999999999999999999999997754310 0001 1223
Q ss_pred HHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEE-----E----c----c-CcEEEeCEEEEccCCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVE-----L----S----N-GKKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 87 ~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~-----~----~----~-g~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
++.+-+.+.++.++ + .+..+++|..+........+. . . + -..+.||.||+|||+ .++.|++
T Consensus 216 ~~~~~~~~~l~~~~~v--~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa--~~r~~pi 291 (985)
T TIGR01372 216 DWAAATVAELTAMPEV--TLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA--HERPLVF 291 (985)
T ss_pred HHHHHHHHHHhcCCCc--EEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC--CCcCCCC
Confidence 33233333333343 4 477788888775421111110 0 0 0 115889999999999 7788888
Q ss_pred CC-CCCCceecc---CCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 152 SG-YFSGEILHS---MDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 152 ~g-~~~g~~~~~---~~~~-~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
+| ...+ ++.. ..+. ......+++|+|||+|.+|+|+|..|++.| +.|+++.+++.. .+
T Consensus 292 pG~~~pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-~~-------------- 355 (985)
T TIGR01372 292 ANNDRPG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-SP-------------- 355 (985)
T ss_pred CCCCCCC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-hH--------------
Confidence 88 3333 2211 1111 112346899999999999999999999998 457777655320 00
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEec-
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFV- 300 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~- 300 (433)
.+.+. +. ..++ .+.....+.++.+. .|.+.
T Consensus 356 ------------~l~~~----L~----~~GV-------------------------~i~~~~~v~~i~g~~~v~~V~l~~ 390 (985)
T TIGR01372 356 ------------EARAE----AR----ELGI-------------------------EVLTGHVVAATEGGKRVSGVAVAR 390 (985)
T ss_pred ------------HHHHH----HH----HcCC-------------------------EEEcCCeEEEEecCCcEEEEEEEe
Confidence 11111 10 0111 12223344455432 34443
Q ss_pred ---CCceeeccEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 301 ---DDTHIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 301 ---dG~~~~~D~vi~atG~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
+++++++|.|++++|++|+..++..... .++... ..+ .-.++.|+||++||+.... .+..|..+++.++..
T Consensus 391 ~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~-~~~--~~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~ 466 (985)
T TIGR01372 391 NGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAI-AAF--LPGDAVQGCILAGAANGLF-GLAAALADGAAAGAA 466 (985)
T ss_pred cCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeecccc-Cce--ecCCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHH
Confidence 4567999999999999999888764432 222111 001 1136689999999998644 445689999999988
Q ss_pred HhhhhcC
Q psy2398 376 IQAFIRK 382 (433)
Q Consensus 376 i~g~~~l 382 (433)
+......
T Consensus 467 i~~~lg~ 473 (985)
T TIGR01372 467 AARAAGF 473 (985)
T ss_pred HHHHcCC
Confidence 8655543
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=210.36 Aligned_cols=289 Identities=19% Similarity=0.244 Sum_probs=169.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||+|++|+++|..|++.|++|+|||+.+..||.+.+..+ .+...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~-----------------------------~~~~~ 332 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIP-----------------------------SYRLP 332 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCC-----------------------------cccCC
Confidence 4578999999999999999999999999999999988887665411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.+...+.++++++ .+++++.|.. + ++.++ ....||+||+|||+. .|+.++++| ...+ +.++.+
T Consensus 333 ~~~~~~~~~~~~~~gv--~~~~~~~v~~-~-------~~~~~-~~~~yD~vilAtGa~-~~r~l~i~G~~~~g-v~~a~~ 399 (604)
T PRK13984 333 DEALDKDIAFIEALGV--KIHLNTRVGK-D-------IPLEE-LREKHDAVFLSTGFT-LGRSTRIPGTDHPD-VIQALP 399 (604)
T ss_pred HHHHHHHHHHHHHCCc--EEECCCEeCC-c-------CCHHH-HHhcCCEEEEEcCcC-CCccCCCCCcCCcC-eEeHHH
Confidence 3333444455666777 5777777631 1 11111 135799999999984 467778888 3222 222111
Q ss_pred CC---------CC-CCCCCCeEEEEcCCCCHHHHHHHHhccC------CcEEEEEec-CceeecccCCCCChhHHhHhhc
Q psy2398 165 YK---------SP-DQIRNKRVLVVGAGNSGCDIAVDASHHS------EKVYHSTRR-GYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 165 ~~---------~~-~~~~~~~v~VvG~G~sg~d~a~~l~~~~------~~V~~~~r~-~~~~~p~~~~~~~~~~~~~~~p 227 (433)
+. .. ....+++|+|||+|.+|+|+|..+++.+ .+|+++..+ ....+|
T Consensus 400 ~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~---------------- 463 (604)
T PRK13984 400 LLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMP---------------- 463 (604)
T ss_pred HHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCC----------------
Confidence 11 00 1124789999999999999999998864 367876432 111111
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc-cCCCeeec--CCceee-e--CC-eEEe-
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDILPK--DDIKNL-N--GN-IVHF- 299 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~v~~~-~--~~-~v~~- 299 (433)
... ...+... . .|+. ...+....+.. .+++++.. ..+... + +. ....
T Consensus 464 ~~~-------~e~~~~~---~-----~GV~----------i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~ 518 (604)
T PRK13984 464 ADM-------EEIEEGL---E-----EGVV----------IYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFD 518 (604)
T ss_pred CCH-------HHHHHHH---H-----cCCE----------EEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceec
Confidence 110 0011100 0 0110 00000000000 11222110 000000 0 00 0111
Q ss_pred -cCCceeeccEEEEccCCCCCCCCCCcc---cccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 300 -VDDTHIEVDTIIYATGYNRHFPFIDKE---KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 300 -~dG~~~~~D~vi~atG~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
.++.++++|.||+|+|++|+.++|..+ .+..+.+.+.+++ .+.|+.|+||++||++..+. ...|..+|+.+|..
T Consensus 519 ~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~-~~~Ts~~gVfAaGD~~~~~~-~v~Ai~~G~~AA~~ 596 (604)
T PRK13984 519 ESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNE-YGQTSIPWLFAGGDIVHGPD-IIHGVADGYWAAEG 596 (604)
T ss_pred CCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCC-CCccCCCCEEEecCcCCchH-HHHHHHHHHHHHHH
Confidence 122469999999999999998887632 2333445555554 56889999999999987554 45789999999998
Q ss_pred Hhhh
Q psy2398 376 IQAF 379 (433)
Q Consensus 376 i~g~ 379 (433)
|...
T Consensus 597 I~~~ 600 (604)
T PRK13984 597 IDMY 600 (604)
T ss_pred HHHH
Confidence 8654
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=181.73 Aligned_cols=265 Identities=18% Similarity=0.206 Sum_probs=186.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCC--CC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYP--VY 82 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 82 (433)
...|||+|||+||+|.+||.+.++.|++.=++- ..+||+-..... -+++. ..
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~------------------------IENfIsv~~ 262 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMG------------------------IENFISVPE 262 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccc------------------------hhheecccc
Confidence 356999999999999999999999999766654 246765443310 00111 12
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG 157 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g 157 (433)
...+++...+.+-.+++.+. +.--.+.+++.+. ++..+|++++|....++.||+|||+ ..+-..+|| +|..
T Consensus 263 teGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA--rWRn~nvPGE~e~rn 338 (520)
T COG3634 263 TEGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA--RWRNMNVPGEDEYRN 338 (520)
T ss_pred ccchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc--chhcCCCCchHHHhh
Confidence 34677888888888888763 4333455666664 5678999999999999999999999 446667888 6777
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
+-+..|..++..-|+||+|+|||||+||+|.|.+|+....+||++.-.+..
T Consensus 339 KGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL----------------------------- 389 (520)
T COG3634 339 KGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL----------------------------- 389 (520)
T ss_pred CCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh-----------------------------
Confidence 777778888998999999999999999999999999999999998744321
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC-----eEEec---CCc--ee
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFV---DDT--HI 305 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~-----~v~~~---dG~--~~ 305 (433)
+..+-+.+.+.. + .++++ +..-+++.++ ++.+. +|. .+
T Consensus 390 kAD~VLq~kl~s-l-----------------------------~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l 439 (520)
T COG3634 390 KADAVLQDKLRS-L-----------------------------PNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHL 439 (520)
T ss_pred hhHHHHHHHHhc-C-----------------------------CCcEEEecceeeEEecCCceecceEEEeccCCceeEE
Confidence 111111111110 0 03333 2233444332 23333 343 36
Q ss_pred eccEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC
Q psy2398 306 EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA 359 (433)
Q Consensus 306 ~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~ 359 (433)
+-+-|+.-.|.-||+.||+.. ++.+..+-.+.+....|+.|+||++|||...+
T Consensus 440 ~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~ 492 (520)
T COG3634 440 ELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492 (520)
T ss_pred EeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCc
Confidence 778899999999999999855 55544455555556699999999999998643
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=198.27 Aligned_cols=161 Identities=24% Similarity=0.322 Sum_probs=109.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHh--cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSE--GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~--~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..++|+||||||+||+||..|++ .|++|+|||+.+.+||...+.. .+.++
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv----------------------------aP~~~ 76 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV----------------------------APDHP 76 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc----------------------------CCCcc
Confidence 35789999999999999999987 6999999999999999877651 01233
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceecc
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHS 162 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~ 162 (433)
....+...+..+.+..++ .++.+..|- ..++.++- ...||.||+|||+. .++.+++|| ...+ ++..
T Consensus 77 ~~k~v~~~~~~~~~~~~v--~~~~nv~vg--------~dvtl~~L-~~~yDaVIlAtGa~-~~~~l~IpG~d~~g-V~~a 143 (491)
T PLN02852 77 ETKNVTNQFSRVATDDRV--SFFGNVTLG--------RDVSLSEL-RDLYHVVVLAYGAE-SDRRLGIPGEDLPG-VLSA 143 (491)
T ss_pred hhHHHHHHHHHHHHHCCe--EEEcCEEEC--------ccccHHHH-hhhCCEEEEecCCC-CCCCCCCCCCCCCC-eEEH
Confidence 334455566666666555 344444431 12333332 24799999999984 235677887 3222 2222
Q ss_pred CCC----------CCC--CCCCCCeEEEEcCCCCHHHHHHHHhcc---------------------CCcEEEEEecCc
Q psy2398 163 MDY----------KSP--DQIRNKRVLVVGAGNSGCDIAVDASHH---------------------SEKVYHSTRRGY 207 (433)
Q Consensus 163 ~~~----------~~~--~~~~~~~v~VvG~G~sg~d~a~~l~~~---------------------~~~V~~~~r~~~ 207 (433)
.++ ... ....+++|+|||+|++|+|+|..|.+. .++|+++.|++.
T Consensus 144 ~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 144 REFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred HHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCCh
Confidence 221 111 113589999999999999999998764 467999999984
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=173.76 Aligned_cols=194 Identities=21% Similarity=0.284 Sum_probs=141.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCcccCCCCCCccccceEeecC--CCcccCCC--------
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGVWNSQASCGRVYPSLHLISP--KFNTQVPD-------- 72 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------- 72 (433)
+....|++.||-||+-|+.|..|.+.+ .++..+||.+.+ .|... .+.++..++.+ +.+.+..+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpG----mllegstlQv~FlkDLVTl~~PTs~ySFL 75 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPG----MLLEGSTLQVPFLKDLVTLVDPTSPYSFL 75 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCC----cccCCccccccchhhhccccCCCCchHHH
Confidence 357799999999999999999999975 689999999887 78776 23444443332 11111111
Q ss_pred -C--------CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEE--EEEccCcEEEeCEEEEc
Q psy2398 73 -Y--------PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWE--VELSNGKKKKYDFIAVC 139 (433)
Q Consensus 73 -~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~--v~~~~g~~~~~d~vIvA 139 (433)
+ .+-.....++++.++.+|+++.+..+. .++|+++|+.|..- +.... +.+.++..++|+.||++
T Consensus 76 NYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~---~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg 152 (436)
T COG3486 76 NYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLP---SLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLG 152 (436)
T ss_pred HHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCC---ccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEc
Confidence 0 001111256889999999999999884 58999999977332 33333 55666778999999999
Q ss_pred cCCCCCCCCCCCCCCCC-CceeccCCCCCCC-CCCCCe-EEEEcCCCCHHHHHHHHhcc----CCcEEEEEecCce
Q psy2398 140 NGAQRVARYPNYSGYFS-GEILHSMDYKSPD-QIRNKR-VLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYH 208 (433)
Q Consensus 140 tG~~s~p~~p~i~g~~~-g~~~~~~~~~~~~-~~~~~~-v~VvG~G~sg~d~a~~l~~~----~~~V~~~~r~~~~ 208 (433)
+|. .|.+|+.-..+. ++++|+.++.... +..+++ |.|||+|.||+|+..+|... ..++.|+.|++.+
T Consensus 153 ~G~--~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf 226 (436)
T COG3486 153 VGT--QPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF 226 (436)
T ss_pred cCC--CcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC
Confidence 999 999996433333 4899999998553 445555 99999999999999999875 3468899998753
|
|
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=170.57 Aligned_cols=321 Identities=15% Similarity=0.159 Sum_probs=184.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC--CCCCCcccCCCC--CCccccceEeecCCC----cccCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME--SDLGGVWNSQAS--CGRVYPSLHLISPKF----NTQVPDYPMP 76 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~--~~~Gg~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (433)
+-.+|.+|||||.+||+||++.+..|.+|.|+|-- ...|..|..... +-.|.|...+...+. +.+-..+.+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34689999999999999999999999999999831 124444444322 012333222222111 1111111111
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHcCCCcceEe-CcEEEEEEEe---CCeEEEE--EccC--cEEEeCEEEEccCCCCCCC
Q psy2398 77 DNY-PVYPNHSMMLDYLRSYAKKFDVYNHSIF-NTEVINLEQY---EDIWEVE--LSNG--KKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 77 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~V~~v~~~---~~~~~v~--~~~g--~~~~~d~vIvAtG~~s~p~ 147 (433)
-.. .--..+..+.+-++......+-.-++.+ ..+|+.++-- .+..++. -..+ ..++++.++||||. +|+
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~--RPr 174 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL--RPR 174 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC--CCC
Confidence 111 1122345556666665555443223444 2334444321 1222332 2223 34789999999999 999
Q ss_pred CCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 148 YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 148 ~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
+|+|||. ....+.|.+..+...-+|| -+|||+|+.|.|.|..|+..|.+|++..|+-- -| |..
T Consensus 175 Yp~IpG~-~Ey~ITSDDlFsl~~~PGk-TLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~---Lr---GFD--------- 237 (503)
T KOG4716|consen 175 YPDIPGA-KEYGITSDDLFSLPYEPGK-TLVVGAGYVALECAGFLKGFGYDVTVMVRSIL---LR---GFD--------- 237 (503)
T ss_pred CCCCCCc-eeeeecccccccccCCCCc-eEEEccceeeeehhhhHhhcCCCcEEEEEEee---cc---ccc---------
Confidence 9999991 1223556666555444454 67899999999999999999999999998731 11 111
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeE--Ee---c--
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIV--HF---V-- 300 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v--~~---~-- 300 (433)
+ ...+. +...+...|++ +. +-.+-..|+.++..+. .. .
T Consensus 238 ----q-----dmae~----v~~~m~~~Gik-----f~-----------------~~~vp~~Veq~~~g~l~v~~k~t~t~ 282 (503)
T KOG4716|consen 238 ----Q-----DMAEL----VAEHMEERGIK-----FL-----------------RKTVPERVEQIDDGKLRVFYKNTNTG 282 (503)
T ss_pred ----H-----HHHHH----HHHHHHHhCCc-----ee-----------------ecccceeeeeccCCcEEEEeeccccc
Confidence 1 11111 11111122221 00 0001112333332221 11 1
Q ss_pred CCceeeccEEEEccCCCCCCCCCCccc--ccc-cCCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHH
Q psy2398 301 DDTHIEVDTIIYATGYNRHFPFIDKEK--LEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 301 dG~~~~~D~vi~atG~~~~~~~l~~~~--~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i 376 (433)
.+-+-++|.|+||.|+++...-|..+. +.. ....-.+.+....++.|.|||+||+.-. +-+.+.|.+.+|++|+.+
T Consensus 283 ~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rl 362 (503)
T KOG4716|consen 283 EEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRL 362 (503)
T ss_pred ccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHH
Confidence 122357999999999999877665443 333 1222233445668899999999998753 567789999999999888
Q ss_pred hhh
Q psy2398 377 QAF 379 (433)
Q Consensus 377 ~g~ 379 (433)
.+.
T Consensus 363 f~g 365 (503)
T KOG4716|consen 363 FAG 365 (503)
T ss_pred hcC
Confidence 554
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-22 Score=190.35 Aligned_cols=290 Identities=17% Similarity=0.125 Sum_probs=196.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..+++|||-|.+|..+...+++. -+++++|-..+... |...+++.. .+.-.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n------------Y~Ri~Ls~v--------------l~~~~ 56 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN------------YNRILLSSV--------------LAGEK 56 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc------------ccceeeccc--------------cCCCc
Confidence 36899999999999999999983 45899998766541 222222110 01112
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSM 163 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~ 163 (433)
..+++.-.-.++++++++ +++.+.+|+.|++ +...|+++.|.++.||.+|+|||+ .|.+|++||.....++-..
T Consensus 57 ~~edi~l~~~dwy~~~~i--~L~~~~~v~~idr--~~k~V~t~~g~~~~YDkLilATGS--~pfi~PiPG~~~~~v~~~R 130 (793)
T COG1251 57 TAEDISLNRNDWYEENGI--TLYTGEKVIQIDR--ANKVVTTDAGRTVSYDKLIIATGS--YPFILPIPGSDLPGVFVYR 130 (793)
T ss_pred cHHHHhccchhhHHHcCc--EEEcCCeeEEecc--CcceEEccCCcEeecceeEEecCc--cccccCCCCCCCCCeeEEe
Confidence 234444445667788888 6888999999987 444788889999999999999998 8999999993222222222
Q ss_pred CCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHH
Q psy2398 164 DYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 238 (433)
Q Consensus 164 ~~~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 238 (433)
.+.+.. ....++-+|||+|.-|.|.|..|...|-+|++++-.+..+. . .
T Consensus 131 ~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMe-----------------r---------Q 184 (793)
T COG1251 131 TIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME-----------------R---------Q 184 (793)
T ss_pred cHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHH-----------------H---------h
Confidence 222111 11234578999999999999999999999999885442110 0 1
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee----CCeEEecCCceeeccEEEEcc
Q psy2398 239 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN----GNIVHFVDDTHIEVDTIIYAT 314 (433)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~----~~~v~~~dG~~~~~D~vi~at 314 (433)
+++.--+.++..++..|+ ++.+....+++. ...+.|+||+.+++|.||+|+
T Consensus 185 LD~~ag~lL~~~le~~Gi-------------------------~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~ 239 (793)
T COG1251 185 LDRTAGRLLRRKLEDLGI-------------------------KVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAV 239 (793)
T ss_pred hhhHHHHHHHHHHHhhcc-------------------------eeecccchhhhhcCcceeeEeecCCCcccceeEEEec
Confidence 111111111222222222 233333222222 356889999999999999999
Q ss_pred CCCCCCCCCCcccccccCCccccccccccCCCCcEEEEcccccc----CChhhHHHHHHHHHHHHHhhhhc
Q psy2398 315 GYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAFIR 381 (433)
Q Consensus 315 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~----~~~~~~a~~qa~~~a~~i~g~~~ 381 (433)
|.+|+..+....++..++ ++.+++ .+.|++|+||++|.|+.. .++..-+-.|++.+|.++.+...
T Consensus 240 GIrPn~ela~~aGlavnr-GIvvnd-~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 240 GIRPNDELAKEAGLAVNR-GIVVND-YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred ccccccHhHHhcCcCcCC-Ceeecc-cccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence 999999888777777654 444554 458999999999999853 24445567899999999987744
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-17 Score=158.41 Aligned_cols=196 Identities=13% Similarity=0.171 Sum_probs=121.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCC-CCc-cccce-EeecCCCcccCCCCCC------
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQAS-CGR-VYPSL-HLISPKFNTQVPDYPM------ 75 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~------ 75 (433)
|++|+|||||++|+++|.+|.+.+ ++|+|||++..+|..+.+... .+. +.-.. ....+.....|..+..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 358999999999999999998764 589999998888855444321 000 00000 0000000011111100
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHHHHc-------CCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEE
Q psy2398 76 ---------PDNYPVYPNHSMMLDYLRSYAKKF-------DVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAV 138 (433)
Q Consensus 76 ---------~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIv 138 (433)
......|+++..+.+|+++..+.+ +....++.+++|+.++.+++.|.|++.+ +..+.+|.||+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 001125778888888877755433 2222456688999999888889999865 46789999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceeccCCCCC--CCCCCCCeEEEEcCCCCHHHHHHHHhccC--------------------
Q psy2398 139 CNGAQRVARYPNYSGYFSGEILHSMDYKS--PDQIRNKRVLVVGAGNSGCDIAVDASHHS-------------------- 196 (433)
Q Consensus 139 AtG~~s~p~~p~i~g~~~g~~~~~~~~~~--~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-------------------- 196 (433)
|||+. .|..+. +. . .++ ...+.. .....+.+|+|+|.|.|++|++..|...+
T Consensus 161 AtGh~-~p~~~~--~~-~-~yi-~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~ 234 (534)
T PRK09897 161 ATGHV-WPDEEE--AT-R-TYF-PSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASE 234 (534)
T ss_pred CCCCC-CCCCCh--hh-c-ccc-CCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecCCCC
Confidence 99973 222221 10 0 011 111110 11234689999999999999999987542
Q ss_pred -CcEEEEEecCce
Q psy2398 197 -EKVYHSTRRGYH 208 (433)
Q Consensus 197 -~~V~~~~r~~~~ 208 (433)
.++++++|++..
T Consensus 235 ~~~I~a~SRrGl~ 247 (534)
T PRK09897 235 KLNITLMSRTGIL 247 (534)
T ss_pred CceEEEEeCCCCC
Confidence 379999999853
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=168.20 Aligned_cols=310 Identities=18% Similarity=0.218 Sum_probs=170.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||+||+||+||-.|.+.|+-|+|+||.+.+||...|..| .+.+ ..
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygip------nmkl-----------------------dk 1835 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIP------NMKL-----------------------DK 1835 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCC------ccch-----------------------hH
Confidence 479999999999999999999999999999999999999988733 1110 11
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCC-----cee
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG-----EIL 160 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g-----~~~ 160 (433)
.+.+.--++...-|+ ++..|+++- + .+.. ++-.-..|.||+|+|+. .|+-.++|| ...| ..+
T Consensus 1836 ~vv~rrv~ll~~egi--~f~tn~eig------k--~vs~-d~l~~~~daiv~a~gst-~prdlpv~grd~kgv~fame~l 1903 (2142)
T KOG0399|consen 1836 FVVQRRVDLLEQEGI--RFVTNTEIG------K--HVSL-DELKKENDAIVLATGST-TPRDLPVPGRDLKGVHFAMEFL 1903 (2142)
T ss_pred HHHHHHHHHHHhhCc--eEEeecccc------c--cccH-HHHhhccCeEEEEeCCC-CCcCCCCCCccccccHHHHHHH
Confidence 123333334444465 244444431 1 1222 22235789999999995 677778888 3333 233
Q ss_pred ccCCC--------CCCCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccC----CCCChhHHhHhhc
Q psy2398 161 HSMDY--------KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFI----DGKPTPQWMLQLG 227 (433)
Q Consensus 161 ~~~~~--------~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~----~~~~~~~~~~~~p 227 (433)
|...- ......+||.|+|||||.+|-|....-.+.|. .|--+. ++|... .+.|+++ +|
T Consensus 1904 ~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~e-----llp~pp~~ra~~npwpq----wp 1974 (2142)
T KOG0399|consen 1904 EKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFE-----LLPQPPPERAPDNPWPQ----WP 1974 (2142)
T ss_pred HHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceeccee-----ecCCCCcccCCCCCCcc----Cc
Confidence 33211 11124579999999999999999888777754 343332 444332 2223222 12
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceee----eCCe-EEe---
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL----NGNI-VHF--- 299 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~----~~~~-v~~--- 299 (433)
.-++-. .--....+.+-.++..+.+.... +.. -.+|+++-.. +.++ +.++ -.+
T Consensus 1975 rvfrvd----ygh~e~~~~~g~dpr~y~vltk~-------------f~~-~~~g~v~gl~-~vrvew~k~~~g~w~~~ei 2035 (2142)
T KOG0399|consen 1975 RVFRVD----YGHAEAKEHYGSDPRTYSVLTKR-------------FIG-DDNGNVTGLE-TVRVEWEKDDKGRWQMKEI 2035 (2142)
T ss_pred eEEEee----cchHHHHHHhCCCcceeeeeeee-------------eec-cCCCceeeEE-EEEEEEEecCCCceEEEEc
Confidence 222210 00111111233333333221100 000 0112222100 1111 1111 111
Q ss_pred c-CCceeeccEEEEccCCCCCCCCC-Ccccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHH
Q psy2398 300 V-DDTHIEVDTIIYATGYNRHFPFI-DKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 300 ~-dG~~~~~D~vi~atG~~~~~~~l-~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i 376 (433)
. +-+.+++|+||+|.||...-+.+ +...++. .+..+..-...+.++.+.+|++|||+...+++..+...+|.+|+.+
T Consensus 2036 ~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2036 NNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred CCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 1 22358999999999998654433 3223333 2222322233468899999999999987665555555555555544
Q ss_pred ----hhhhcCCCc
Q psy2398 377 ----QAFIRKSKG 385 (433)
Q Consensus 377 ----~g~~~lp~~ 385 (433)
.|.--+|..
T Consensus 2116 d~~~~~~t~l~~~ 2128 (2142)
T KOG0399|consen 2116 DELMGGTTDLPGD 2128 (2142)
T ss_pred HHHhCCcccCCCC
Confidence 444456654
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=151.77 Aligned_cols=162 Identities=20% Similarity=0.301 Sum_probs=98.7
Q ss_pred CCCcEEEECCChHHHHHHHHHH-hcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELS-EGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~-~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..++|+||||||+|+.||.+|+ +.|++|+|||+.+.+||.+.+..+ +..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa----------------------------Pdh~~ 89 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA----------------------------PDHIH 89 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC----------------------------CCCcc
Confidence 4578999999999999999875 569999999999999999887621 11222
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC------------C--
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP------------N-- 150 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p------------~-- 150 (433)
-..+...+...+...++ ++..+.+| .. .++.++ -...||.||+|+|+. ...+| .
T Consensus 90 ~k~v~~~f~~~~~~~~v--~f~gnv~V---G~-----Dvt~ee-L~~~YDAVIlAtGA~-~l~ipi~~~~~~~~~~GGe~ 157 (506)
T PTZ00188 90 VKNTYKTFDPVFLSPNY--RFFGNVHV---GV-----DLKMEE-LRNHYNCVIFCCGAS-EVSIPIGQQDEDKAVSGGET 157 (506)
T ss_pred HHHHHHHHHHHHhhCCe--EEEeeeEe---cC-----ccCHHH-HHhcCCEEEEEcCCC-CCCCCcccccceeeeccccc
Confidence 34444444444443333 12222221 00 122221 124799999999984 22333 1
Q ss_pred ----CCCCCCCcee--ccCCCCC----CCC------C-CCCeEEEEcCCCCHHHHHHHHhc-------------------
Q psy2398 151 ----YSGYFSGEIL--HSMDYKS----PDQ------I-RNKRVLVVGAGNSGCDIAVDASH------------------- 194 (433)
Q Consensus 151 ----i~g~~~g~~~--~~~~~~~----~~~------~-~~~~v~VvG~G~sg~d~a~~l~~------------------- 194 (433)
++|.|...-+ +.....+ ... + ..++++|||.|+.|+|+|..|++
T Consensus 158 ~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~ 237 (506)
T PTZ00188 158 NPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIK 237 (506)
T ss_pred cccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHH
Confidence 3342222211 1111110 011 1 45789999999999999997532
Q ss_pred --cCCcEEEEEecCc
Q psy2398 195 --HSEKVYHSTRRGY 207 (433)
Q Consensus 195 --~~~~V~~~~r~~~ 207 (433)
..++|+++.|++.
T Consensus 238 ~s~v~~V~ivgRRGp 252 (506)
T PTZ00188 238 RHNIKHIYIVGRRGF 252 (506)
T ss_pred hCCCcEEEEEEecCH
Confidence 2568999999984
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=158.96 Aligned_cols=283 Identities=18% Similarity=0.199 Sum_probs=172.3
Q ss_pred EEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC-CCCHH
Q psy2398 10 LCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV-YPNHS 86 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 86 (433)
++|||+|++|+++|..|.+. +.+++++.........-.. .+..... .....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~ 54 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCP--------------------------LSLYVGGGIASLE 54 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCc--------------------------cchHHhcccCCHH
Confidence 58999999999999998885 4588877776543111000 0000000 00111
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK 166 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~ 166 (433)
++..... +..+.++ .++.+++|+.++.... .+.+.++ .+.||++++|||. .|..++ +.+...........
T Consensus 55 ~~~~~~~-~~~~~~i--~~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa--~~~~~~--~~~~~~~~~~~~~~ 124 (415)
T COG0446 55 DLRYPPR-FNRATGI--DVRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGA--RPRPPP--ISDWEGVVTLRLRE 124 (415)
T ss_pred Hhcccch-hHHhhCC--EEeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCC--cccCCC--ccccCceEEECCHH
Confidence 1111111 1134445 5778889999987444 5666666 7899999999999 667665 21111111111111
Q ss_pred CCCCC-----CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHH
Q psy2398 167 SPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 241 (433)
Q Consensus 167 ~~~~~-----~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 241 (433)
....+ ..++++|+|+|..|+++|..+.+.|.+|+++...+... ++... . .+.+
T Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~-~~~~~----------------~-----~~~~ 182 (415)
T COG0446 125 DAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG-GQLLD----------------P-----EVAE 182 (415)
T ss_pred HHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc-hhhhh----------------H-----HHHH
Confidence 11111 14789999999999999999999999999999876421 11000 0 1111
Q ss_pred HHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCe-------EEecCCceeeccEEEEcc
Q psy2398 242 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI-------VHFVDDTHIEVDTIIYAT 314 (433)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~-------v~~~dG~~~~~D~vi~at 314 (433)
.+.+.+ ...++ ++.....+.+++... +...++..+++|.+++++
T Consensus 183 ~~~~~l----~~~gi-------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 233 (415)
T COG0446 183 ELAELL----EKYGV-------------------------ELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGP 233 (415)
T ss_pred HHHHHH----HHCCc-------------------------EEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEee
Confidence 111111 11111 233344555555321 577888899999999999
Q ss_pred CCCCCCCCCCccc--ccccCCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhh
Q psy2398 315 GYNRHFPFIDKEK--LEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 315 G~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~ 379 (433)
|.+|+..+.+... .....+++.++........+++|++||+... ...++.+..|++.++.++.+.
T Consensus 234 g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 234 GERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred cccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 9999966665443 2334456777665533348999999998742 234567889999999999875
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=142.57 Aligned_cols=199 Identities=22% Similarity=0.308 Sum_probs=133.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC---CCeEEEccCCCCCCcccCCCCCCccccceEeecCCC-cccC-CCCC-------
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN---INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF-NTQV-PDYP------- 74 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g---~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~------- 74 (433)
+++|+|||+|++|+.+|.+|.+.- ..+.|||+...+|+...|.+. -+...+|.+.. +..+ ++.|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~----~p~~~lNv~a~~mS~~~pD~p~~F~~WL 76 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTE----EPEHLLNVPAARMSAFAPDIPQDFVRWL 76 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCC----CchhhhccccccccccCCCCchHHHHHH
Confidence 479999999999999999999861 239999999999988777643 22333444332 2222 2211
Q ss_pred ------------CCCCCCCCCCHHHHHHHHHHHHHHcCCC---c-ceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEE
Q psy2398 75 ------------MPDNYPVYPNHSMMLDYLRSYAKKFDVY---N-HSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFI 136 (433)
Q Consensus 75 ------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~-~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~v 136 (433)
...+.+.|+++..+.+|+.+..+.+-.. . -.+..++++.+.++ ...|.++..+|....||.+
T Consensus 77 ~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~ 156 (474)
T COG4529 77 QKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADII 156 (474)
T ss_pred HhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEE
Confidence 1234457889999999998887655111 1 12336677777776 6789999999999999999
Q ss_pred EEccCCCCCCCCCCCCC-CCCCc-eeccCCCCCCC--C-CCCCeEEEEcCCCCHHHHHHHHhccC--CcEEEEEecCcee
Q psy2398 137 AVCNGAQRVARYPNYSG-YFSGE-ILHSMDYKSPD--Q-IRNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHY 209 (433)
Q Consensus 137 IvAtG~~s~p~~p~i~g-~~~g~-~~~~~~~~~~~--~-~~~~~v~VvG~G~sg~d~a~~l~~~~--~~V~~~~r~~~~~ 209 (433)
|+|||+ .+..++... .+.+. .+.+..+.... . -.+.+|+|+|+|.+-+|....+.+.| .+||+++|++ .
T Consensus 157 Vlatgh--~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG--l 232 (474)
T COG4529 157 VLATGH--SAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG--L 232 (474)
T ss_pred EEeccC--CCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc--c
Confidence 999998 333332222 23321 12222222111 1 13456999999999999999999974 5799999998 4
Q ss_pred eccc
Q psy2398 210 YPKF 213 (433)
Q Consensus 210 ~p~~ 213 (433)
.|+.
T Consensus 233 ~~~~ 236 (474)
T COG4529 233 VPRP 236 (474)
T ss_pred ccCC
Confidence 4443
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=158.22 Aligned_cols=294 Identities=19% Similarity=0.159 Sum_probs=174.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
++|+||||||+||++|..|.+.|++|+++|+.+..||...+..| .|.-..+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP-----------------------------~~kl~k~ 174 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIP-----------------------------DFKLPKD 174 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCc-----------------------------hhhccch
Confidence 79999999999999999999999999999999999999888733 2333455
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCC-
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK- 166 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~- 166 (433)
+.+...++.++.|+ .++.++++=. .++.++ ..-.+|.|++|||.. .|+..+++|.-...+..+.++.
T Consensus 175 i~d~~i~~l~~~Gv--~~~~~~~vG~--------~it~~~-L~~e~Dav~l~~G~~-~~~~l~i~g~d~~gv~~A~dfL~ 242 (457)
T COG0493 175 ILDRRLELLERSGV--EFKLNVRVGR--------DITLEE-LLKEYDAVFLATGAG-KPRPLDIPGEDAKGVAFALDFLT 242 (457)
T ss_pred HHHHHHHHHHHcCe--EEEEcceECC--------cCCHHH-HHHhhCEEEEecccc-CCCCCCCCCcCCCcchHHHHHHH
Confidence 66666777777775 5777766521 122221 124569999999985 7777788882122222221111
Q ss_pred -------------CCCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 167 -------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 167 -------------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
......+|+|+|||+|.+++|++....+.|. +|+.+.+...- ....+ .|.+-..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~-----~~~~~-------~~~~~~~ 310 (457)
T COG0493 243 RLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRD-----DETNE-------WPTWAAQ 310 (457)
T ss_pred HHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccccc-----ccCCc-------ccccchh
Confidence 1112346999999999999999988888864 78887633210 00000 0010000
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCeeec--CCceee---eC----CeEEecC
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPK--DDIKNL---NG----NIVHFVD 301 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~--~~v~~~---~~----~~v~~~d 301 (433)
...+... -.+....+ ...-...+ ..|+|.-. ..+... .+ .-+-+ .
T Consensus 311 -----~~~~~a~--eeg~~~~~----------------~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v-~ 366 (457)
T COG0493 311 -----LEVRSAG--EEGVERLP----------------FVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGV-I 366 (457)
T ss_pred -----hhhhhhh--hcCCcccc----------------cCCceeEeecCCCcEeeeecccccccCcccccccccCccc-c
Confidence 0000000 00000000 00001111 12333311 111010 00 01111 2
Q ss_pred Cc--eeeccEEEEccCCCCCCCCCC-cc-cccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHH
Q psy2398 302 DT--HIEVDTIIYATGYNRHFPFID-KE-KLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 302 G~--~~~~D~vi~atG~~~~~~~l~-~~-~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i 376 (433)
|+ .+++|.|+.|+|+.++..... .. .+.. ..+.+.+......++.|++|+.||+.........|..++|-+|+.|
T Consensus 367 gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i 446 (457)
T COG0493 367 GTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAI 446 (457)
T ss_pred CceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhh
Confidence 33 478999999999999865432 11 2222 3345555554448889999999999986666777888899888887
Q ss_pred hh
Q psy2398 377 QA 378 (433)
Q Consensus 377 ~g 378 (433)
..
T Consensus 447 ~~ 448 (457)
T COG0493 447 DK 448 (457)
T ss_pred hH
Confidence 63
|
|
| >KOG1800|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=138.43 Aligned_cols=157 Identities=23% Similarity=0.336 Sum_probs=102.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||+||||+.+|..|+++ ++.|+++|+.+..+|.-++. -.|.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG-------------------------------VAPD 68 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG-------------------------------VAPD 68 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec-------------------------------cCCC
Confidence 45999999999999999999984 68999999999988877765 1222
Q ss_pred HHHHH---HHHHHHHHHcCCCcceEeCcEE-EEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCcee
Q psy2398 85 HSMML---DYLRSYAKKFDVYNHSIFNTEV-INLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 160 (433)
Q Consensus 85 ~~~~~---~~l~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~ 160 (433)
+++.. .-+...+++..+ .+..|.+| .. +++.+ -+-.||.||+|.|+. .++..+|||+-...++
T Consensus 69 HpEvKnvintFt~~aE~~rf--sf~gNv~vG~d---------vsl~e-L~~~ydavvLaYGa~-~dR~L~IPGe~l~~V~ 135 (468)
T KOG1800|consen 69 HPEVKNVINTFTKTAEHERF--SFFGNVKVGRD---------VSLKE-LTDNYDAVVLAYGAD-GDRRLDIPGEELSGVI 135 (468)
T ss_pred CcchhhHHHHHHHHhhccce--EEEecceeccc---------ccHHH-HhhcccEEEEEecCC-CCcccCCCCcccccce
Confidence 33333 333444444332 12224333 11 22211 235799999999996 5667788883222222
Q ss_pred ccCCCC-------C----CCCCCCCeEEEEcCCCCHHHHHHHHhcc----------------------CCcEEEEEecCc
Q psy2398 161 HSMDYK-------S----PDQIRNKRVLVVGAGNSGCDIAVDASHH----------------------SEKVYHSTRRGY 207 (433)
Q Consensus 161 ~~~~~~-------~----~~~~~~~~v~VvG~G~sg~d~a~~l~~~----------------------~~~V~~~~r~~~ 207 (433)
.+..+. + .-++.+..|+|||.|+.|+|+|..|... .+.|+++.|++.
T Consensus 136 Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 136 SAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred ehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCc
Confidence 222221 1 1245688999999999999999976542 356899999874
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=161.66 Aligned_cols=171 Identities=17% Similarity=0.188 Sum_probs=89.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCC--C-ccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASC--G-RVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
..++|+||||||+|++||.+|++.|++|++||+.+..|+......|- - ..++.+.-..+...-....+..+. .+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~---R~ 458 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITV---RW 458 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccc---cc
Confidence 45799999999999999999999999999999976655432210000 0 000000000000000111111111 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEe--CcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCcee
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIF--NTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 160 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~--~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~ 160 (433)
.....+.++...+ .+. .+.+ +++ +.. .++.++-....||.|++|||++ .|+.++++|.-...+.
T Consensus 459 --~k~~l~~i~~il~-~g~--~v~~~~gv~---lG~-----dit~edl~~~gyDAV~IATGA~-kpr~L~IPGeda~GV~ 524 (1028)
T PRK06567 459 --DKNNLDILRLILE-RNN--NFKYYDGVA---LDF-----NITKEQAFDLGFDHIAFCIGAG-QPKVLDIENFEAKGVK 524 (1028)
T ss_pred --hHHHHHHHHHHHh-cCC--ceEEECCeE---ECc-----cCCHHHHhhcCCCEEEEeCCCC-CCCCCCCCCccCCCeE
Confidence 1112222222222 232 2444 433 111 1222221235799999999984 5788888882222232
Q ss_pred ccCCCCCC------------C-CCCCCeEEEEcCCCCHHHHHHHHh
Q psy2398 161 HSMDYKSP------------D-QIRNKRVLVVGAGNSGCDIAVDAS 193 (433)
Q Consensus 161 ~~~~~~~~------------~-~~~~~~v~VvG~G~sg~d~a~~l~ 193 (433)
.+.++... . ...+++|+|||||++|+|+|....
T Consensus 525 sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAl 570 (1028)
T PRK06567 525 TASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESL 570 (1028)
T ss_pred EHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHH
Confidence 22221100 1 113689999999999999999444
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-16 Score=141.23 Aligned_cols=301 Identities=15% Similarity=0.251 Sum_probs=175.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC--------CcccCCCCCC-ccccceEeecCCCcccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG--------GVWNSQASCG-RVYPSLHLISPKFNTQVPDYPM 75 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G--------g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (433)
+...+|||+|.+..+++...... +.+|.+|...+.+- -.|.+..|+. .-+....++....-.-| .
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiff----e 253 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFF----E 253 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEe----c
Confidence 45689999999988888877765 55788876555431 1233222210 00111111111000000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC-CCC-
Q psy2398 76 PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN-YSG- 153 (433)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~-i~g- 153 (433)
|+ ..|.+.+++-. +.+-|+ -+..+.+|.+|+..++ .|++++|.++.||.++||||. .|+-.+ +..
T Consensus 254 pd--~FfvspeDLp~-----~~nGGv--Avl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~--~Pk~l~~~~~A 320 (659)
T KOG1346|consen 254 PD--GFFVSPEDLPK-----AVNGGV--AVLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGV--RPKKLQVFEEA 320 (659)
T ss_pred CC--cceeChhHCcc-----cccCce--EEEeccceEEeecccC--eEEecCCcEeehhheeeecCc--Ccccchhhhhc
Confidence 00 12344444322 122244 3566778888876554 577789999999999999999 776443 322
Q ss_pred --CCCCce--ec-cCCCCCCCC--CCCCeEEEEcCCCCHHHHHHHHhcc----CCcEEEEEecCceeecccCCCCChhHH
Q psy2398 154 --YFSGEI--LH-SMDYKSPDQ--IRNKRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 154 --~~~g~~--~~-~~~~~~~~~--~~~~~v~VvG~G~sg~d~a~~l~~~----~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
+...++ +| ..+|+..+. ..-+.|.|||+|..|.|+|+.|.+. |.+|+.+...... +
T Consensus 321 ~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n-------------m 387 (659)
T KOG1346|consen 321 SEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN-------------M 387 (659)
T ss_pred CHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC-------------h
Confidence 111121 11 122222211 1246899999999999999999985 5677766544321 0
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeee----CCe
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLN----GNI 296 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~----~~~ 296 (433)
..-||..+.+ +-.+.+. .+.|. .+..|+++. .-.
T Consensus 388 ~kiLPeyls~-----wt~ekir-----------------------------------~~GV~V~pna~v~sv~~~~~nl~ 427 (659)
T KOG1346|consen 388 EKILPEYLSQ-----WTIEKIR-----------------------------------KGGVDVRPNAKVESVRKCCKNLV 427 (659)
T ss_pred hhhhHHHHHH-----HHHHHHH-----------------------------------hcCceeccchhhhhhhhhccceE
Confidence 1115666666 4444433 22333 333444442 234
Q ss_pred EEecCCceeeccEEEEccCCCCCCCCCCccccccc--CCccccccccccCCCCcEEEEccccccCC---------hhhHH
Q psy2398 297 VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVNAAAG---------LGDGL 365 (433)
Q Consensus 297 v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~p~i~~iG~~~~~~~---------~~~~a 365 (433)
+.++||.++..|+|+.|+|-.||..+...++++.+ -|+.+++..+.. ..|||++||+++..- .+..+
T Consensus 428 lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdha 505 (659)
T KOG1346|consen 428 LKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHA 505 (659)
T ss_pred EEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccc
Confidence 56899999999999999999999999988877763 355666654432 589999999986421 12334
Q ss_pred HHHHHHHHHHHhhh
Q psy2398 366 RLQGQFIRSYIQAF 379 (433)
Q Consensus 366 ~~qa~~~a~~i~g~ 379 (433)
...+|++..++.|.
T Consensus 506 vvSGRLAGENMtgA 519 (659)
T KOG1346|consen 506 VVSGRLAGENMTGA 519 (659)
T ss_pred eeeceecccccccc
Confidence 45566666666554
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-14 Score=127.61 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=100.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC--------CcccCCCCCCccccceEeecC---CCc----ccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG--------GVWNSQASCGRVYPSLHLISP---KFN----TQVP 71 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G--------g~~~~~~~~~~~~~~~~~~~~---~~~----~~~~ 71 (433)
.+||+||||||+||.||..+.++|.+|+|||+.+.+| |.|+..+.. .+..+..+.| +.+ ..|.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~--~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSE--APDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccc--cHHHHHHhCCCcchHHHHHHHhCC
Confidence 5899999999999999999999999999999998764 556554321 1222222222 110 0111
Q ss_pred C---------CCC----CCCCCCCC---CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCE
Q psy2398 72 D---------YPM----PDNYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDF 135 (433)
Q Consensus 72 ~---------~~~----~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~ 135 (433)
. ... ...-.-|| ....+.+.+...+++.++ .++.+++|.+++.++..+.+++.+++++.||.
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 0 000 01111333 468889999999999999 69999999999998889999999998899999
Q ss_pred EEEccCCCCCCCC
Q psy2398 136 IAVCNGAQRVARY 148 (433)
Q Consensus 136 vIvAtG~~s~p~~ 148 (433)
+|+|||..|.|+.
T Consensus 159 lilAtGG~S~P~l 171 (408)
T COG2081 159 LILATGGKSWPKL 171 (408)
T ss_pred EEEecCCcCCCCC
Confidence 9999998877754
|
|
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=117.59 Aligned_cols=151 Identities=21% Similarity=0.313 Sum_probs=94.3
Q ss_pred cEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|||||++|.+||..|+.+ ..+++++..++.+-. ...-.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks-------------------------------------vtn~~ 43 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS-------------------------------------VTNYQ 43 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH-------------------------------------HhhHH
Confidence 368999999999999999986 457888876653310 11123
Q ss_pred HHHHHHHHHHHHcCCCcc------eEeCcEEEEEE-EeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCce
Q psy2398 87 MMLDYLRSYAKKFDVYNH------SIFNTEVINLE-QYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI 159 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~------i~~~~~V~~v~-~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~ 159 (433)
.+.+|+.. |.+.++ -.|.+-+..+. .+.....+++++|..+.|++|++|||. .|+.-. .| -...+
T Consensus 44 ~i~~ylek----fdv~eq~~~elg~~f~~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~--kPklq~-E~-~n~~I 115 (334)
T KOG2755|consen 44 KIGQYLEK----FDVKEQNCHELGPDFRRFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGY--KPKLQV-EG-INPKI 115 (334)
T ss_pred HHHHHHHh----cCccccchhhhcccHHHHHHhhhhhccccceEEecCCceeeEEEEEEecCC--Ccceee-cC-CCceE
Confidence 34444433 222110 01111111111 124556788999999999999999998 776532 11 11223
Q ss_pred eccCCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 160 LHSMDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 160 ~~~~~~~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+-..+..+.+ -.+.|.|+|+|.|-+++|+++++... +|+|....+
T Consensus 116 v~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~ 165 (334)
T KOG2755|consen 116 VGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE 165 (334)
T ss_pred EEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch
Confidence 3333333332 24688999999999999999998764 688888765
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-14 Score=126.90 Aligned_cols=117 Identities=23% Similarity=0.389 Sum_probs=72.3
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHHH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMM 88 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (433)
||+|||||++|++||..|++.+.+++++|+.+..+.. ... .+...... ........
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~~-----~~~~~~~~------------------~~~~~~~~ 56 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SGC-----IPSPLLVE------------------IAPHRHEF 56 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HSH-----HHHHHHHH------------------HHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-ccc-----cccccccc------------------cccccccc
Confidence 7999999999999999999999999999886532110 000 00000000 00000111
Q ss_pred HH----HHHHHHHHcCCCcceEeCcEEEEEEEeCCe-----EEEE---EccCcEEEeCEEEEccCCCCCCCCCCCCC
Q psy2398 89 LD----YLRSYAKKFDVYNHSIFNTEVINLEQYEDI-----WEVE---LSNGKKKKYDFIAVCNGAQRVARYPNYSG 153 (433)
Q Consensus 89 ~~----~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-----~~v~---~~~g~~~~~d~vIvAtG~~s~p~~p~i~g 153 (433)
.. .+.+.....++ .+++++++.+++...+. +.+. ..++.++.||+||+|||. .|+.|.++|
T Consensus 57 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~~~~~~i~g 129 (201)
T PF07992_consen 57 LPARLFKLVDQLKNRGV--EIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS--RPRTPNIPG 129 (201)
T ss_dssp HHHHHGHHHHHHHHHTH--EEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE--EEEEESSTT
T ss_pred ccccccccccccccceE--EEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc--ccceeecCC
Confidence 10 12222234455 46678999999887553 2332 233457999999999997 788888887
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=128.31 Aligned_cols=138 Identities=24% Similarity=0.317 Sum_probs=80.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC--------CcccCCCCCCccccceEee---cCCCcc----cCC-
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG--------GVWNSQASCGRVYPSLHLI---SPKFNT----QVP- 71 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G--------g~~~~~~~~~~~~~~~~~~---~~~~~~----~~~- 71 (433)
|||+|||||||||.||..+++.|.+|+|+|+.+.+| |.|+..+.. ......... .+..+. .|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~-~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLN-IDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccc-cchhhHhhhcccchHHHHHHHhcCCH
Confidence 699999999999999999999999999999999875 555543210 001111111 011110 010
Q ss_pred --------CCCC----CCCCCCCC---CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCE
Q psy2398 72 --------DYPM----PDNYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDF 135 (433)
Q Consensus 72 --------~~~~----~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~ 135 (433)
.... .++...|| ...++.+.+...+++.++ .++++++|..|+.++++ |.|.++++..+.+|.
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp HHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred HHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 0000 00111122 467788888888888888 69999999999988666 999997777899999
Q ss_pred EEEccCCCCCCCC
Q psy2398 136 IAVCNGAQRVARY 148 (433)
Q Consensus 136 vIvAtG~~s~p~~ 148 (433)
||+|||+.|.|..
T Consensus 158 vILAtGG~S~p~~ 170 (409)
T PF03486_consen 158 VILATGGKSYPKT 170 (409)
T ss_dssp EEE----SSSGGG
T ss_pred EEEecCCCCcccc
Confidence 9999999776653
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=108.52 Aligned_cols=127 Identities=22% Similarity=0.402 Sum_probs=90.9
Q ss_pred EEECCChHHHHHHHHHHhc-----CCCeEEEccCCCC-CCcccCCCCCCccccceEeecCCCcccC-CCCC---------
Q psy2398 11 CIIGGGPLGIGLGRELSEG-----NINYDLYEMESDL-GGVWNSQASCGRVYPSLHLISPKFNTQV-PDYP--------- 74 (433)
Q Consensus 11 ~IIGaG~~Gl~~a~~l~~~-----g~~v~v~e~~~~~-Gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------- 74 (433)
+|||+|++|++++.+|.++ ..+|+|||+.+.. |+.|.... .+...+|++...+.. ++.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~-----~~~~llN~~a~~~s~~~~~~~~~f~~Wl~ 75 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQ-----PPSHLLNTPADQMSLFPDDPGDDFVDWLR 75 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCC-----ChHHhhcccccccccccccCCCCHHHHHH
Confidence 6999999999999999987 4599999996653 35666541 234445555443332 2222
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHcC--CCc--c-eEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 75 -------MPDNYPVYPNHSMMLDYLRSYAKKFD--VYN--H-SIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 75 -------~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~--~-i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
.......|+++..+.+|+++..+.+- +.. . .+...+|+.|+..+++|.|.+.+|..+.||.||+|||+
T Consensus 76 ~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 76 ANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred hcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 01122368999999999998877641 111 1 23367899999988889999999999999999999996
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-12 Score=120.94 Aligned_cols=140 Identities=22% Similarity=0.299 Sum_probs=93.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC---cccCCCC----------------CCccccceEeecCC-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG---VWNSQAS----------------CGRVYPSLHLISPK- 65 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg---~~~~~~~----------------~~~~~~~~~~~~~~- 65 (433)
+++||+|||||++|+++|..|++.|++|+|+|+.+.... ....... .+............
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 578999999999999999999999999999999875321 0000000 00001111111111
Q ss_pred -CcccCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccC
Q psy2398 66 -FNTQVPDYPM-PDNY--PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 66 -~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG 141 (433)
.+..++.... ...+ .....+.++.+++.+.+...++ +++++++|+.++.+++.+.+++.+|+++.+|.||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 1111110000 0011 1234678889999998888777 58999999999987788899988888899999999999
Q ss_pred CCCCCC
Q psy2398 142 AQRVAR 147 (433)
Q Consensus 142 ~~s~p~ 147 (433)
.+|..+
T Consensus 161 ~~s~~r 166 (375)
T PRK06847 161 LYSKVR 166 (375)
T ss_pred CCcchh
Confidence 977543
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=119.11 Aligned_cols=138 Identities=16% Similarity=0.103 Sum_probs=89.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc-----CCCCCCccccc---------------eEeecC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN-----SQASCGRVYPS---------------LHLISP 64 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~-----~~~~~~~~~~~---------------~~~~~~ 64 (433)
+.++||+||||||+|++||..|++.|++|+|+||.+..|.... +.......++. ..+...
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcC
Confidence 4569999999999999999999999999999999876543211 00000000110 001111
Q ss_pred CCcc--cCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEcc
Q psy2398 65 KFNT--QVPDYPM--PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 65 ~~~~--~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAt 140 (433)
.... .+..... +........+.++.+++.+.+++.|+ .++.+++|+.+..+++.+.....++.++.+|.||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~ 160 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILAD 160 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEe
Confidence 1111 1111000 01111224578889999999988887 5888999999987666665444566679999999999
Q ss_pred CCCC
Q psy2398 141 GAQR 144 (433)
Q Consensus 141 G~~s 144 (433)
|.++
T Consensus 161 G~~s 164 (428)
T PRK10157 161 GVNS 164 (428)
T ss_pred CCCH
Confidence 9854
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=114.13 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=88.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCc--------------cccceEeecCCCcccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGR--------------VYPSLHLISPKFNTQVPDY 73 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 73 (433)
+||+|||||++|+++|..|++.|++|+|+|+....+..+....-... ............-. . ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDS-V-EI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcE-E-Ee
Confidence 59999999999999999999999999999998876542221100000 00000000000000 0 01
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEEccCCCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIvAtG~~s 144 (433)
+.+.......++..+.+.+.+.+.+.++ +++++++|+.+..+++.+.+.+.+ +.++++|+||+|+|.++
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 1111111235678899999999988887 588999999998877777776554 35799999999999965
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=117.61 Aligned_cols=139 Identities=15% Similarity=0.258 Sum_probs=89.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC------------------cccCCCCCCccccceEeecCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG------------------VWNSQASCGRVYPSLHLISPKF 66 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg------------------~~~~~~~~~~~~~~~~~~~~~~ 66 (433)
...+||+|||||++|+++|..|++.|++|+|||+.+..+. .|..-......+..........
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 4568999999999999999999999999999999865321 1110000011112222211111
Q ss_pred -c-----ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 67 -N-----TQVPDYPMPD-NYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 67 -~-----~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
. ..|....... .......+..+.+.+.+.+.+++.. .+++++|+.++.+++.|.|+++++.++.+|.||.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A 162 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPREDEVTVTLADGTTLSARLVVGA 162 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence 0 0011000000 0111245677888888777776432 47799999998888889999988888999999999
Q ss_pred cCCCCC
Q psy2398 140 NGAQRV 145 (433)
Q Consensus 140 tG~~s~ 145 (433)
+|.+|.
T Consensus 163 dG~~S~ 168 (388)
T PRK07494 163 DGRNSP 168 (388)
T ss_pred cCCCch
Confidence 999763
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-11 Score=116.26 Aligned_cols=142 Identities=17% Similarity=0.243 Sum_probs=92.4
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC----C--------------------cccCCCC-CCcc
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG----G--------------------VWNSQAS-CGRV 55 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G----g--------------------~~~~~~~-~~~~ 55 (433)
|++ ..++||+||||||+|+++|..|++.|++|+|+|+.+... + .|..-.. ....
T Consensus 1 ~~~-~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 1 MSR-RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCC-CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 553 456899999999999999999999999999999976431 1 0000000 0011
Q ss_pred ccceEeecC--CCcccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEE
Q psy2398 56 YPSLHLISP--KFNTQVPDYPMPD-NYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKK 132 (433)
Q Consensus 56 ~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~ 132 (433)
+..+..... .....++...... .......+..+.+.+.+.+++.++ .++++++|+.++.+++.+.+++.++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 157 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQDADRVRLRLDDGRRLE 157 (392)
T ss_pred ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEecCCeEEEEECCCCEEE
Confidence 111111110 0011111110000 011123467788888888887777 58899999999988888899988888899
Q ss_pred eCEEEEccCCCCC
Q psy2398 133 YDFIAVCNGAQRV 145 (433)
Q Consensus 133 ~d~vIvAtG~~s~ 145 (433)
+|.||.|+|.+|.
T Consensus 158 a~~vV~AdG~~S~ 170 (392)
T PRK08773 158 AALAIAADGAAST 170 (392)
T ss_pred eCEEEEecCCCch
Confidence 9999999999763
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-11 Score=118.59 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=90.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC--CCC-----------------CCccccceE-eecC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS--QAS-----------------CGRVYPSLH-LISP 64 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~--~~~-----------------~~~~~~~~~-~~~~ 64 (433)
+..+||+||||||+|+++|..|++.|++|+|+|+.+.....-.- -.+ .+....... +...
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 45689999999999999999999999999999998764211000 000 000000000 0000
Q ss_pred CCccc----CCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 65 KFNTQ----VPDYP-MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 65 ~~~~~----~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
..+.. +.... .........++..+.+.+.+.+...++ .++++++|+.++.+++++.+++.+++++.+++||.|
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv--~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgA 160 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA--AVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGA 160 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEEC
Confidence 01000 00000 000011123466778888888888887 699999999999887788888888878999999999
Q ss_pred cCCCCC
Q psy2398 140 NGAQRV 145 (433)
Q Consensus 140 tG~~s~ 145 (433)
+|.+|.
T Consensus 161 DG~~S~ 166 (487)
T PRK07190 161 DGSRSF 166 (487)
T ss_pred CCCCHH
Confidence 999773
|
|
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=105.00 Aligned_cols=114 Identities=18% Similarity=0.313 Sum_probs=68.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc-CC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG-NI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~-g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
+.+++|+|+|||.+|+++|..+.+. +. +|.|+|..... -|+..+......++.++.-..+.. .-.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H------------yYQPgfTLvGgGl~~l~~srr~~a-~li 103 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH------------YYQPGFTLVGGGLKSLDSSRRKQA-SLI 103 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc------------ccCcceEEeccchhhhhhccCccc-ccc
Confidence 3568999999999999999999875 44 89999987642 133333333333333322111000 001
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG 153 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g 153 (433)
|... .++++.++. .+++ +-+|.+++|+++.||++|+|+|. .-..-.|+|
T Consensus 104 P~~a---~wi~ekv~~---------------f~P~--~N~v~t~gg~eIsYdylviA~Gi--ql~y~~IkG 152 (446)
T KOG3851|consen 104 PKGA---TWIKEKVKE---------------FNPD--KNTVVTRGGEEISYDYLVIAMGI--QLDYGKIKG 152 (446)
T ss_pred cCCc---HHHHHHHHh---------------cCCC--cCeEEccCCcEEeeeeEeeeeec--eeccchhcC
Confidence 1111 222333333 3332 23577788899999999999999 555556666
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=117.58 Aligned_cols=137 Identities=20% Similarity=0.327 Sum_probs=90.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC--Cc-----ccCCCC---CCccccceE-----ee---cCCCcc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG--GV-----WNSQAS---CGRVYPSLH-----LI---SPKFNT 68 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G--g~-----~~~~~~---~~~~~~~~~-----~~---~~~~~~ 68 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+... +. +..... .-.+++.+. .. ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 3899999999999999999999999999999976421 10 000000 000011000 00 000001
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
.+...+..........+..+.+.+.+.+++.++ .++++++|+.++.+++.+.+++.++.++++|+||.|+|.+|.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 111111111111234567788888888888777 699999999999888888898888778999999999999774
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=119.19 Aligned_cols=136 Identities=22% Similarity=0.320 Sum_probs=88.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC---cccCCC----------------CCCccccceEeecCCCcc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG---VWNSQA----------------SCGRVYPSLHLISPKFNT 68 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg---~~~~~~----------------~~~~~~~~~~~~~~~~~~ 68 (433)
+||+||||||+|+++|..|++.|++|+|+|+.+.... ...... ..+..+............
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 7999999999999999999999999999999865310 000000 001111111111111111
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc--cC-cEEEeCEEEEccCCCCC
Q psy2398 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG-KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g-~~~~~d~vIvAtG~~s~ 145 (433)
.+........+....++..+.+.+.+.++..++ .++++++++.++.+++.+++++. ++ .++++|+||.|+|.+|.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 111111111111234577888888888888777 58999999999887777777664 34 46899999999999774
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-11 Score=114.94 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=86.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccC-CC---CCCcccCCC------C---CCccccceEeecCCCcccCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEME-SD---LGGVWNSQA------S---CGRVYPSLHLISPKFNTQVPDYP 74 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~-~~---~Gg~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~ 74 (433)
+||+||||||+|+++|+.|++.|++|+++|+. +. .|+...... + ....+......++.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999987 22 222211110 0 00112222333322211001111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc------C--cEEEeCEEEEccCCCCC
Q psy2398 75 MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------G--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~------g--~~~~~d~vIvAtG~~s~ 145 (433)
.+..+.....+..+.+++.+.+.+.++ .++ ..+|+.+..+++.+.+++.+ + .++.+|.||.|+|.+|.
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~--~v~-~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGA--ELI-HGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCC--EEE-eeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 111111236788999999999988887 354 44688888877888887653 1 36899999999999764
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-11 Score=115.01 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=90.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC---Cc-ccCC----CC------------------CCccccceE
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG---GV-WNSQ----AS------------------CGRVYPSLH 60 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G---g~-~~~~----~~------------------~~~~~~~~~ 60 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+... |. .... .+ ....+....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 3899999999999999999999999999999987532 10 0000 00 001112222
Q ss_pred eecCC--CcccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEE
Q psy2398 61 LISPK--FNTQVPDYPMPDNY-PVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFI 136 (433)
Q Consensus 61 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~v 136 (433)
..... ....+......... .....+..+.+.+.+.+... ++ .++++++|+.++.+++.+.+++.+|+++++|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI--TLLAPAELQQVAWGENEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence 11111 00111110000000 11345778888888877765 45 588999999998877788899888889999999
Q ss_pred EEccCCCCCC
Q psy2398 137 AVCNGAQRVA 146 (433)
Q Consensus 137 IvAtG~~s~p 146 (433)
|.|+|.+|.-
T Consensus 161 VgADG~~S~v 170 (400)
T PRK08013 161 VGADGANSWL 170 (400)
T ss_pred EEeCCCCcHH
Confidence 9999998744
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=115.66 Aligned_cols=137 Identities=15% Similarity=0.254 Sum_probs=90.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCc---------------------ccCCCCCCccccceEeec
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGV---------------------WNSQASCGRVYPSLHLIS 63 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~---------------------~~~~~~~~~~~~~~~~~~ 63 (433)
++||+||||||+|+++|..|++.| ++|+|+|+.+..... |..-...+.....+....
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 479999999999999999999985 999999997642100 000000000111111111
Q ss_pred CC-------CcccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCE
Q psy2398 64 PK-------FNTQVPDYP-MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDF 135 (433)
Q Consensus 64 ~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~ 135 (433)
.. ....+.... ....+.....+..+.+.+.+.+...++ .++++++|+.++.+++.+.+++.++.++.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETRDEGVTVTLSDGSVLEARL 158 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence 00 001111000 001111235678899999888888777 58899999999988888999988888899999
Q ss_pred EEEccCCCCC
Q psy2398 136 IAVCNGAQRV 145 (433)
Q Consensus 136 vIvAtG~~s~ 145 (433)
||.|+|.+|.
T Consensus 159 vI~AdG~~S~ 168 (403)
T PRK07333 159 LVAADGARSK 168 (403)
T ss_pred EEEcCCCChH
Confidence 9999999664
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=113.38 Aligned_cols=137 Identities=9% Similarity=0.121 Sum_probs=86.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc------ccCCCCCCccccce---------------Eeec
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV------WNSQASCGRVYPSL---------------HLIS 63 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~------~~~~~~~~~~~~~~---------------~~~~ 63 (433)
+.++||+||||||+|++||+.|++.|++|+++||.+..|.. ...... ...++.+ .+..
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~ 81 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTL-EAIIPGFAASAPVERKVTREKISFLT 81 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccH-HHHcccccccCCccccccceeEEEEe
Confidence 45699999999999999999999999999999998765421 110000 0011111 0000
Q ss_pred CC--CcccCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 64 PK--FNTQVPDYP--MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 64 ~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
.. ....+.... .+........+..+.+++.+.++..++ .++.+++|+.+..+++.+.....++.++.+|.||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv--~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A 159 (429)
T PRK10015 82 EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA--QFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA 159 (429)
T ss_pred CCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCC--EEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence 00 000111000 000011223578888889888888887 588899999988766666543334457999999999
Q ss_pred cCCCC
Q psy2398 140 NGAQR 144 (433)
Q Consensus 140 tG~~s 144 (433)
+|.++
T Consensus 160 dG~~s 164 (429)
T PRK10015 160 DGVNS 164 (429)
T ss_pred cCcch
Confidence 99854
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=106.57 Aligned_cols=129 Identities=18% Similarity=0.302 Sum_probs=83.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC------CCcccc-----------------ceEeecC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS------CGRVYP-----------------SLHLISP 64 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~------~~~~~~-----------------~~~~~~~ 64 (433)
.+|+|||+|++|++||..|++.|.+|+||||+..+||....+.- ++..|- ++.....
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 58999999999999999999999999999999999987665432 111111 1111111
Q ss_pred CCcccCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEcc
Q psy2398 65 KFNTQVPDY---PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCN 140 (433)
Q Consensus 65 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAt 140 (433)
..+.++.+. +.+...+ |.....+....+..++. + ++.++++|+.+.+.++.|++++++|. ...||.||+|.
T Consensus 82 ~~~~~~~~~~~~~~~d~~p-yvg~pgmsalak~LAtd--L--~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~ 156 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDP-YVGEPGMSALAKFLATD--L--TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAI 156 (331)
T ss_pred ccccccccCCCCCCCCCCc-cccCcchHHHHHHHhcc--c--hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEec
Confidence 222223221 1111111 33222233333333333 3 47899999999999999999997654 47899999987
Q ss_pred C
Q psy2398 141 G 141 (433)
Q Consensus 141 G 141 (433)
=
T Consensus 157 P 157 (331)
T COG3380 157 P 157 (331)
T ss_pred C
Confidence 6
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-11 Score=116.67 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=89.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc---ccCCCC----------------CCccccceEeecC--
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV---WNSQAS----------------CGRVYPSLHLISP-- 64 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~---~~~~~~----------------~~~~~~~~~~~~~-- 64 (433)
.+.||+|||||++|+++|..|++.|++|+|+|+.+.++.. ...... .+...........
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 3579999999999999999999999999999998765311 000000 0000111111100
Q ss_pred -CCcccCCCCC-CCCC--CC-CCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEE
Q psy2398 65 -KFNTQVPDYP-MPDN--YP-VYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAV 138 (433)
Q Consensus 65 -~~~~~~~~~~-~~~~--~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIv 138 (433)
.....++... .... .+ ....+.++.+.+.+.+.+.+ + +++++++|+.++.+++.+.+++.+|.++.+|.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 160 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLV--EFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIG 160 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCc--EEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEE
Confidence 0000000000 0000 01 12457778888887776654 4 58889999999887778889888888899999999
Q ss_pred ccCCCCCC
Q psy2398 139 CNGAQRVA 146 (433)
Q Consensus 139 AtG~~s~p 146 (433)
|+|.+|..
T Consensus 161 AdG~~S~~ 168 (396)
T PRK08163 161 CDGVKSVV 168 (396)
T ss_pred CCCcChHH
Confidence 99997754
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-11 Score=117.50 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=87.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC--CCC-----------------CCccccceEeecC-CC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS--QAS-----------------CGRVYPSLHLISP-KF 66 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~--~~~-----------------~~~~~~~~~~~~~-~~ 66 (433)
++||+||||||+|+++|..|++.|++|+|||+.+.....-.- -.+ .+..+........ ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 489999999999999999999999999999998754210000 000 0111111111111 00
Q ss_pred ccc--CCC-C-C---CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE---ccCcEEEeCEE
Q psy2398 67 NTQ--VPD-Y-P---MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL---SNGKKKKYDFI 136 (433)
Q Consensus 67 ~~~--~~~-~-~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~---~~g~~~~~d~v 136 (433)
+.. +.. . + .+.......++..+.+.+.+.+.+.++ +++++++|+.++.+++.+++++ .++.++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~v 160 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDADGVTARVAGPAGEETVRARYL 160 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEE
Confidence 000 000 0 0 000011123466777888888887776 6999999999998877777776 45567999999
Q ss_pred EEccCCCCC
Q psy2398 137 AVCNGAQRV 145 (433)
Q Consensus 137 IvAtG~~s~ 145 (433)
|.|+|.+|.
T Consensus 161 VgADG~~S~ 169 (502)
T PRK06184 161 VGADGGRSF 169 (502)
T ss_pred EECCCCchH
Confidence 999999874
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.5e-11 Score=114.20 Aligned_cols=137 Identities=16% Similarity=0.214 Sum_probs=88.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---CCcccCCCC----------------CCccccceEeecCC--C
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---GGVWNSQAS----------------CGRVYPSLHLISPK--F 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---Gg~~~~~~~----------------~~~~~~~~~~~~~~--~ 66 (433)
.||+|||||++|+++|..|++.|++|+|+|+.+.. |..+..... .+..+..+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 48999999999999999999999999999988753 221211110 01111222211111 1
Q ss_pred cccCCCCCCCCCC--C-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCC
Q psy2398 67 NTQVPDYPMPDNY--P-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 67 ~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
...++........ . ....+.++.+.+.+.+.. ++ .++++++|++++.+++.++|++++|+++.+|.||.|+|.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QV--ETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-Ce--EEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 1111111111111 1 124567777776654432 34 6899999999998888899999999889999999999997
Q ss_pred CCCC
Q psy2398 144 RVAR 147 (433)
Q Consensus 144 s~p~ 147 (433)
|.-+
T Consensus 158 S~vR 161 (391)
T PRK07588 158 SHVR 161 (391)
T ss_pred ccch
Confidence 7544
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=114.37 Aligned_cols=135 Identities=20% Similarity=0.352 Sum_probs=87.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc---ccCCCC----------------CCccccceEeecCCCcc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV---WNSQAS----------------CGRVYPSLHLISPKFNT 68 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~---~~~~~~----------------~~~~~~~~~~~~~~~~~ 68 (433)
++|+|||||++|+++|..|++.|++|+|+|+.+..... ...... .+.....+....+...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~- 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT- 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-
Confidence 37999999999999999999999999999998764211 100000 0011111222111110
Q ss_pred cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 69 QVPDYPMPDN-YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 69 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.+...+.... ......+..+.+.+.+.+.. . .++++++|++++.+++.+.+++++|.++.+|.||.|+|.+|.-+
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHH
Confidence 0001111100 11235677777777766542 2 58999999999988888999999988899999999999977433
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.4e-11 Score=112.68 Aligned_cols=138 Identities=21% Similarity=0.231 Sum_probs=93.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-C---CC--CcccCCC--------------C-CCccccceEeecCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-D---LG--GVWNSQA--------------S-CGRVYPSLHLISPK 65 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~---~G--g~~~~~~--------------~-~~~~~~~~~~~~~~ 65 (433)
++||+|||||++|+++|..|++.|++|+|||+.+ . .| .....+. . ....+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999972 2 11 0000000 0 11122222222211
Q ss_pred -CcccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEc-cCcEEEeCEEEEccC
Q psy2398 66 -FNTQVPDYPMPDN-YPVYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNG 141 (433)
Q Consensus 66 -~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~-~g~~~~~d~vIvAtG 141 (433)
....++....... .....++.++.+.+.+.+...+ + .++++++|+.++.+++.+++++. +|++++||.||.|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCC
Confidence 1222222222211 1123568889999999888775 5 58999999999998888889888 898999999999999
Q ss_pred CCCCC
Q psy2398 142 AQRVA 146 (433)
Q Consensus 142 ~~s~p 146 (433)
.+|.-
T Consensus 160 ~~S~v 164 (387)
T COG0654 160 ANSAV 164 (387)
T ss_pred CchHH
Confidence 98743
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=116.47 Aligned_cols=139 Identities=19% Similarity=0.300 Sum_probs=91.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc---CCC----------------CCCccccceEeecC--
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN---SQA----------------SCGRVYPSLHLISP-- 64 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~---~~~----------------~~~~~~~~~~~~~~-- 64 (433)
..+||+||||||+|+++|..|++.|++|+|||+.+....... ... ..+.......+...
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 468999999999999999999999999999999876432111 000 01111222222211
Q ss_pred CCcccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEeCEE
Q psy2398 65 KFNTQVPD-YPMPDNYP--VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFI 136 (433)
Q Consensus 65 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g--~~~~~d~v 136 (433)
.....++. ......++ ....+..+.+++.+.+.++ ++ .++++++|+.++.+++++++++. +| .++++|+|
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYV 166 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEE
Confidence 11112221 00001111 2345677888888877765 56 69999999999988888888876 35 36899999
Q ss_pred EEccCCCCCC
Q psy2398 137 AVCNGAQRVA 146 (433)
Q Consensus 137 IvAtG~~s~p 146 (433)
|.|+|.+|..
T Consensus 167 VgADG~~S~v 176 (538)
T PRK06183 167 VGCDGANSFV 176 (538)
T ss_pred EecCCCchhH
Confidence 9999998754
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=111.37 Aligned_cols=140 Identities=18% Similarity=0.219 Sum_probs=88.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---CCcccCCCC----------------CC-ccccceEeec-
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---GGVWNSQAS----------------CG-RVYPSLHLIS- 63 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---Gg~~~~~~~----------------~~-~~~~~~~~~~- 63 (433)
+.++||+||||||+|+++|..|++.|++|+|+|+.+.. ++.-...+. .+ .....+....
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHD 82 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecC
Confidence 45689999999999999999999999999999998864 121101100 00 0111111111
Q ss_pred CCCcccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCC--eEEEEEccCcEEEeCEEEEc
Q psy2398 64 PKFNTQVPDYPMP-DNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 64 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~--~~~v~~~~g~~~~~d~vIvA 139 (433)
......++..... ..+....++.++.+.+.+.+... ++ +++++++|+.++.+++ .+.|++.+|+++.+|.||.|
T Consensus 83 g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA 160 (388)
T PRK07045 83 KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA 160 (388)
T ss_pred CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence 1111111110000 01111245677888777776543 44 6899999999988633 35788888888999999999
Q ss_pred cCCCCCC
Q psy2398 140 NGAQRVA 146 (433)
Q Consensus 140 tG~~s~p 146 (433)
+|.+|.-
T Consensus 161 DG~~S~v 167 (388)
T PRK07045 161 DGARSMI 167 (388)
T ss_pred CCCChHH
Confidence 9998743
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=111.74 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=90.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC-------CC----------------cccCCCCCCccccceEeec
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL-------GG----------------VWNSQASCGRVYPSLHLIS 63 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~-------Gg----------------~~~~~~~~~~~~~~~~~~~ 63 (433)
++||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|..-......+..+....
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 469999999999999999999999999999986321 11 1110000011122222211
Q ss_pred CC--CcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEcc
Q psy2398 64 PK--FNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 64 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAt 140 (433)
.. ....+.... .........+.++.+.+.+.+...+ + .++++++++++..+++.+.++++++ ++++|.||.|+
T Consensus 81 ~~g~~~~~~~~~~-~~~~g~~v~r~~L~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgAD 156 (374)
T PRK06617 81 NKASEILDLRNDA-DAVLGYVVKNSDFKKILLSKITNNPLI--TLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICD 156 (374)
T ss_pred CCCceEEEecCCC-CCCcEEEEEHHHHHHHHHHHHhcCCCc--EEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeC
Confidence 11 111221110 0011123468889999988887765 4 5778999999988878888998776 89999999999
Q ss_pred CCCCCCC
Q psy2398 141 GAQRVAR 147 (433)
Q Consensus 141 G~~s~p~ 147 (433)
|.+|.-+
T Consensus 157 G~~S~vR 163 (374)
T PRK06617 157 GANSKVR 163 (374)
T ss_pred CCCchhH
Confidence 9987544
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=115.80 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=87.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC-----CCcccCCCCCC-------ccccceEeecCCCcccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL-----GGVWNSQASCG-------RVYPSLHLISPKFNTQVPDY 73 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~-----Gg~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 73 (433)
..+||+||||||+|+++|..|++.|++|+|+|+.+.. .|.|...-... ..|+............
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~---- 102 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKK---- 102 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCc----
Confidence 3579999999999999999999999999999997642 12222100000 0111111100000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
..........+.++.+++.+.+...++ +++ ..+|++|+.+++.+.|++++|.++.+|.||.|+|..+
T Consensus 103 -~~~~~y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 103 -DLDRPYGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred -cccCcceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 000011234688888999888887776 343 5789999988888999999988899999999999954
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=112.93 Aligned_cols=139 Identities=17% Similarity=0.256 Sum_probs=88.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC----CC---------------------cccCCCC-CCccccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL----GG---------------------VWNSQAS-CGRVYPS 58 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~----Gg---------------------~~~~~~~-~~~~~~~ 58 (433)
.+.+||+|||||++|+++|..|++.|++|+|+|+.+.. ++ .|..... ....+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 45689999999999999999999999999999987531 11 1110000 0000111
Q ss_pred eEe-ecCCCcccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCE
Q psy2398 59 LHL-ISPKFNTQVPDYPMPDNYP-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDF 135 (433)
Q Consensus 59 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~ 135 (433)
... ........+.......... ....+..+.+.+.+.++.. ++ .++++++|+.++.+++.+.|++.++.++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (391)
T PRK08020 83 LETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNV--TLRCPASLQALQRDDDGWELTLADGEEIQAKL 160 (391)
T ss_pred EEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCc--EEEcCCeeEEEEEcCCeEEEEECCCCEEEeCE
Confidence 110 0001111111100000001 1245677778887777665 65 57889999999887788999988888899999
Q ss_pred EEEccCCCCC
Q psy2398 136 IAVCNGAQRV 145 (433)
Q Consensus 136 vIvAtG~~s~ 145 (433)
||.|+|.+|.
T Consensus 161 vI~AdG~~S~ 170 (391)
T PRK08020 161 VIGADGANSQ 170 (391)
T ss_pred EEEeCCCCch
Confidence 9999999774
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.6e-11 Score=114.39 Aligned_cols=139 Identities=16% Similarity=0.259 Sum_probs=85.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC-----CcccCCCC----------------CCccccceEeecC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG-----GVWNSQAS----------------CGRVYPSLHLISP 64 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G-----g~~~~~~~----------------~~~~~~~~~~~~~ 64 (433)
..+||+|||||++|+++|..|++.|++|+|+|+.+... ........ .............
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 45899999999999999999999999999999987542 11110000 0011111111111
Q ss_pred C--CcccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEcc-C--cEEEeCEEE
Q psy2398 65 K--FNTQVPDYPMPDNYPV-YPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSN-G--KKKKYDFIA 137 (433)
Q Consensus 65 ~--~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g--~~~~~d~vI 137 (433)
. ....+........... ...+..+.+.+.+.+... ++ .++++++|++++.+++.+.|++.+ + .++++|.||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvI 174 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI--TWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVV 174 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEE
Confidence 1 1111211111111111 122456777777766665 45 578899999998877788888764 2 358999999
Q ss_pred EccCCCCCC
Q psy2398 138 VCNGAQRVA 146 (433)
Q Consensus 138 vAtG~~s~p 146 (433)
.|+|.+|.-
T Consensus 175 gADG~~S~v 183 (415)
T PRK07364 175 AADGARSPI 183 (415)
T ss_pred EeCCCCchh
Confidence 999998744
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=112.58 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=88.2
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC-----CCcccCCC--------------C-CCccccceE
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL-----GGVWNSQA--------------S-CGRVYPSLH 60 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~-----Gg~~~~~~--------------~-~~~~~~~~~ 60 (433)
|. ....+||+|||||++|+++|..|++.|++|+|+|+.+.. |..+.... . ....+..+.
T Consensus 1 ~~-~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~ 79 (407)
T PRK06185 1 MA-EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLR 79 (407)
T ss_pred CC-ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEE
Confidence 44 345689999999999999999999999999999997543 11111100 0 000111122
Q ss_pred eecCCC---cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeE---EEEEccCc-EEE
Q psy2398 61 LISPKF---NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW---EVELSNGK-KKK 132 (433)
Q Consensus 61 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~---~v~~~~g~-~~~ 132 (433)
...... ...+...+.+.....+..+..+.+.+.+.+.+. ++ .++++++|+.+..+++.+ .+...+++ ++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~ 157 (407)
T PRK06185 80 FEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIR 157 (407)
T ss_pred EEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEE
Confidence 111111 112221111111222456778888888877665 55 588899999998875554 33334553 689
Q ss_pred eCEEEEccCCCCC
Q psy2398 133 YDFIAVCNGAQRV 145 (433)
Q Consensus 133 ~d~vIvAtG~~s~ 145 (433)
+|.||.|+|.+|.
T Consensus 158 a~~vI~AdG~~S~ 170 (407)
T PRK06185 158 ADLVVGADGRHSR 170 (407)
T ss_pred eCEEEECCCCchH
Confidence 9999999999873
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=112.50 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=87.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEe-----ecCCCc--ccCCCCCCCCCCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHL-----ISPKFN--TQVPDYPMPDNYPV 81 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~ 81 (433)
||+|||||++|+++|..|++.|++|+|+|+.+.+|+.+...-... ..+.+.+ ..-... ..++........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDD-DLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAY 79 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHh-hhhhhchhhHHhhcCCCceEEecCCcchhcCCce
Confidence 799999999999999999999999999999887776332210000 0000000 000000 00111111111111
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 82 -~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
...+..+.+++.+.+...++ .+ +..+|..+..+ ++.|.|++.++.+++++.||.|+|.++
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv--~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGV--LW-LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCc--EE-EccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 25678889999888888776 34 46688888876 678889988887899999999999965
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=112.44 Aligned_cols=137 Identities=14% Similarity=0.219 Sum_probs=87.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc------ccCCC----C------------------CCccccce
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV------WNSQA----S------------------CGRVYPSL 59 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~------~~~~~----~------------------~~~~~~~~ 59 (433)
+||+|||||++|+++|..|++.|++|+|+|+.+...+. +.... + ....+..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 79999999999999999999999999999997621100 00000 0 00011111
Q ss_pred EeecCCC--cccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEE
Q psy2398 60 HLISPKF--NTQVPDYPMPDNY-PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFI 136 (433)
Q Consensus 60 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~v 136 (433)
....... ...|+........ .....+..+.+.+.+.+.+.++ +++++++|+.++.+++.+.|++.+|.++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRSGDDWLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEE
Confidence 1111111 1111110000000 1123456677777666666666 588899999999888889999988888999999
Q ss_pred EEccCCCCCC
Q psy2398 137 AVCNGAQRVA 146 (433)
Q Consensus 137 IvAtG~~s~p 146 (433)
|.|+|.+|..
T Consensus 161 VgAdG~~S~v 170 (405)
T PRK05714 161 VAADGANSAV 170 (405)
T ss_pred EEecCCCchh
Confidence 9999998743
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=111.69 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=88.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC--------cccCCCC-----------------CCccccceEeec
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG--------VWNSQAS-----------------CGRVYPSLHLIS 63 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg--------~~~~~~~-----------------~~~~~~~~~~~~ 63 (433)
||+|||||++|+++|..|++.|++|+|+|+.+..+- ....... ....+.......
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999875421 0110000 000111111111
Q ss_pred CCC--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 64 PKF--NTQVPDYPMPD-NYPVYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 64 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
... ...+....... .......+..+.+.+.+.+.+.+ + .++++++|+.++.+++.+.+++.+|.++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEe
Confidence 110 01111100000 01123457788888888887766 5 589999999998888888999888888999999999
Q ss_pred cCCCCC
Q psy2398 140 NGAQRV 145 (433)
Q Consensus 140 tG~~s~ 145 (433)
+|.+|.
T Consensus 159 dG~~S~ 164 (385)
T TIGR01988 159 DGANSK 164 (385)
T ss_pred CCCCCH
Confidence 999764
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=109.81 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=84.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC---cccCCCC----------------CCccccceEeecCCC-
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG---VWNSQAS----------------CGRVYPSLHLISPKF- 66 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg---~~~~~~~----------------~~~~~~~~~~~~~~~- 66 (433)
|+||+|||||++|+++|..|++.|++|+|||+.+.... ....... ...............
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 35999999999999999999999999999999876421 1111110 011112222221111
Q ss_pred -cccCCC-CCCCCCC--CC-CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccC
Q psy2398 67 -NTQVPD-YPMPDNY--PV-YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 67 -~~~~~~-~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG 141 (433)
+..... .+..... +. ...+.++.+.+.+.+ ..++ .++++++|+.++.+++.++|++.++.++++|.||.|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v--~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSV--EYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCc--EEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 000000 0000000 00 112455555544322 2344 58999999999887788899999998999999999999
Q ss_pred CCCCCC
Q psy2398 142 AQRVAR 147 (433)
Q Consensus 142 ~~s~p~ 147 (433)
.+|.-+
T Consensus 158 ~~S~vR 163 (372)
T PRK05868 158 LHSNVR 163 (372)
T ss_pred CCchHH
Confidence 987543
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.8e-11 Score=105.41 Aligned_cols=132 Identities=13% Similarity=0.197 Sum_probs=83.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc-ccCCCCCCccccceEeecC--CCcccCCCCCCCC--CCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV-WNSQASCGRVYPSLHLISP--KFNTQVPDYPMPD--NYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~ 80 (433)
..+||+||||||+|++||+.|++.|++|+++|+...+||. |... ..++....... ..+..+ ..++.. ...
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg----~~~~~~~v~~~~~~~l~~~-gv~~~~~~~g~ 98 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGG----MLFNKIVVQEEADEILDEF-GIRYKEVEDGL 98 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCc----cccccccchHHHHHHHHHC-CCCceeecCcc
Confidence 3589999999999999999999999999999999887763 3211 01111111000 000000 001100 001
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-e-EEEEEc-----------cCcEEEeCEEEEccCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-I-WEVELS-----------NGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~-~~v~~~-----------~g~~~~~d~vIvAtG~~s 144 (433)
....+.++...+...+.+.++ .++++++|+.+..+++ . +-+... +..++.++.||+|||+++
T Consensus 99 ~~vd~~~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 99 YVADSVEAAAKLAAAAIDAGA--KIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eeccHHHHHHHHHHHHHHcCC--EEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 124567888888888888887 6889999999876533 2 212111 124689999999999854
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-10 Score=102.51 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=84.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC-CcccCCCCCCccccceEeecC-CCcccCCCCCCCCCCC--C
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG-GVWNSQASCGRVYPSLHLISP-KFNTQVPDYPMPDNYP--V 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G-g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~ 81 (433)
..+||+||||||+|+++|+.|++.|++|+|+||...+| +.|... ..++......+ ..+..-...+...... .
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg----~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 95 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGG----MLFSKIVVEKPAHEILDEFGIRYEDEGDGYV 95 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCC----cceecccccchHHHHHHHCCCCeeeccCceE
Confidence 45899999999999999999999999999999998876 444322 11222111110 0000000111111111 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe---EEEEEc-----------cCcEEEeCEEEEccCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEVELS-----------NGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~---~~v~~~-----------~g~~~~~d~vIvAtG~~ 143 (433)
...+.++.+.+...+.+.++ .+++++.|+.+..+++. .-|.++ +..++.++.||.|||+.
T Consensus 96 ~~~~~el~~~L~~~a~e~GV--~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGA--KIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCC--EEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 23467888888888888887 58899999998876442 112221 12368999999999974
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=110.06 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=88.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC---C--CccccceE----eecCCCcccCC----CC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS---C--GRVYPSLH----LISPKFNTQVP----DY 73 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~---~--~~~~~~~~----~~~~~~~~~~~----~~ 73 (433)
++||+||||||||++||+.|++.|++|+++|++..+|.-...... . ..+.+... .........+. ..
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 589999999999999999999999999999999887652222100 0 00000000 00000000000 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEEccCCCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIvAtG~~s 144 (433)
..+........+..+.++|...+++.|. .+..++++..+..+++.+.+.... +.++++++||.|+|.++
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0010111234588899999999999998 589999999999887666555444 35799999999999854
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=110.13 Aligned_cols=134 Identities=16% Similarity=0.277 Sum_probs=86.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC---CcccCCC----C-------CCcccc-----------ceEe
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG---GVWNSQA----S-------CGRVYP-----------SLHL 61 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G---g~~~~~~----~-------~~~~~~-----------~~~~ 61 (433)
.+||+|||||++|+++|..|++.|++|+|+|+.+... ..|.... + .-..+. .+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 4799999999999999999999999999999987642 2222110 0 000000 0000
Q ss_pred ecCC-CcccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEE
Q psy2398 62 ISPK-FNTQVPDYPMPDNYP---VYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFI 136 (433)
Q Consensus 62 ~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~v 136 (433)
.... ....+... ....+ ....+..+.+.+.+.+++.+ + .++ +++|+.++.+++.+.|++.++.++.+|.|
T Consensus 85 ~~~~~~~~~~~~~--~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 159 (388)
T PRK07608 85 FGDAHARLHFSAY--QAGVPQLAWIVESSLIERALWAALRFQPNL--TWF-PARAQGLEVDPDAATLTLADGQVLRADLV 159 (388)
T ss_pred EECCCceeEeecc--ccCCCCCEEEEEhHHHHHHHHHHHHhCCCc--EEE-cceeEEEEecCCeEEEEECCCCEEEeeEE
Confidence 0000 00000000 00011 11346778888888887766 5 355 88999998777889999988878999999
Q ss_pred EEccCCCCC
Q psy2398 137 AVCNGAQRV 145 (433)
Q Consensus 137 IvAtG~~s~ 145 (433)
|.|+|.+|.
T Consensus 160 I~adG~~S~ 168 (388)
T PRK07608 160 VGADGAHSW 168 (388)
T ss_pred EEeCCCCch
Confidence 999999764
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-10 Score=106.80 Aligned_cols=134 Identities=18% Similarity=0.255 Sum_probs=82.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC----CCcccCCCC------CCccccc---------eEeecCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL----GGVWNSQAS------CGRVYPS---------LHLISPKF 66 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~----Gg~~~~~~~------~~~~~~~---------~~~~~~~~ 66 (433)
..++|+|||||++|+++|..|++.|++|+|+|+.+.. |+....... .-.+... ........
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 4589999999999999999999999999999998642 111000000 0000000 00000000
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCC
Q psy2398 67 NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p 146 (433)
- .+...+.+. ....+..+.+.+. +.+.. ..++++++|+.++.+++.+++++.+|.++.+|.||.|.|.+|..
T Consensus 85 ~-~~~~~~~~~---~~~~~~~l~~~L~---~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 R-VVQRRPMPQ---TQTSWNVLYRALR---AAFPA-ERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred C-EeeccCCCc---cccCHHHHHHHHH---HhCCC-cEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 0 000000000 1123444444443 33321 25899999999998888899999999899999999999998754
Q ss_pred C
Q psy2398 147 R 147 (433)
Q Consensus 147 ~ 147 (433)
+
T Consensus 157 R 157 (386)
T PRK07236 157 R 157 (386)
T ss_pred H
Confidence 4
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=110.24 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=86.8
Q ss_pred cEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCc--------c-cCCCC--------------CCccccceEeecC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGV--------W-NSQAS--------------CGRVYPSLHLISP 64 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~--------~-~~~~~--------------~~~~~~~~~~~~~ 64 (433)
||+||||||+|+++|..|++.| ++|+|+|+.+...-. . ..+.- .+...........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999997643110 0 00000 0000001111100
Q ss_pred C--CcccCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 65 K--FNTQVP--DYPMPDNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 65 ~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
. ....+. ++..+. ......+.++.+.+.+.+... ++ +++++++|+.+..+++.+++++.++.++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 81 GHFGATHLRASEFGLPA-LGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred CCCceEEechhhcCCCc-cEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 000010 000000 001245678888888888774 66 588899999998888889999888888999999999
Q ss_pred cCCCCC
Q psy2398 140 NGAQRV 145 (433)
Q Consensus 140 tG~~s~ 145 (433)
+|.+|.
T Consensus 158 dG~~S~ 163 (382)
T TIGR01984 158 DGANSK 163 (382)
T ss_pred cCCChH
Confidence 999763
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.5e-10 Score=107.86 Aligned_cols=137 Identities=12% Similarity=0.158 Sum_probs=84.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC--------CCcccCCC----------------CC-CccccceEe
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL--------GGVWNSQA----------------SC-GRVYPSLHL 61 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~--------Gg~~~~~~----------------~~-~~~~~~~~~ 61 (433)
.+||+||||||+|+++|..|+++|++|+|+|+.+.. |....... .. .........
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 389999999999999999999999999999998652 11000000 00 000011111
Q ss_pred ecCCC--cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHH-HcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEE
Q psy2398 62 ISPKF--NTQVPDYPMP-DNYPVYPNHSMMLDYLRSYAK-KFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIA 137 (433)
Q Consensus 62 ~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vI 137 (433)
..... ...++..... .......++..+.+.+.+.+. ..++ .++++++|+.++.+++.+.|++++|.++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLV 160 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEE
Confidence 11110 0111110000 000111344556555555443 3456 5899999999988777888988888889999999
Q ss_pred EccCCCCC
Q psy2398 138 VCNGAQRV 145 (433)
Q Consensus 138 vAtG~~s~ 145 (433)
.|+|.+|.
T Consensus 161 ~AdG~~S~ 168 (392)
T PRK09126 161 AADSRFSA 168 (392)
T ss_pred EeCCCCch
Confidence 99999664
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.5e-10 Score=111.46 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=88.5
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc--ccCCCC-----------------CCcc--c--c
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV--WNSQAS-----------------CGRV--Y--P 57 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~--~~~~~~-----------------~~~~--~--~ 57 (433)
|.|+...++|+||||||+|+++|..|+++|++|+|||+.+..... ...-.+ .+.. + .
T Consensus 1 ~~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~ 80 (545)
T PRK06126 1 AMENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTD 80 (545)
T ss_pred CCCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCC
Confidence 345567789999999999999999999999999999988642210 000000 0000 0 0
Q ss_pred ceEee--cCCCcccCCC--CC----C--------C-CCCCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCC
Q psy2398 58 SLHLI--SPKFNTQVPD--YP----M--------P-DNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED 119 (433)
Q Consensus 58 ~~~~~--~~~~~~~~~~--~~----~--------~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~ 119 (433)
..... ....+..+.. .. . . .......++..+.+.+.+.+.+. ++ .++++++|+.++.+++
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~~ 158 (545)
T PRK06126 81 IAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQDAD 158 (545)
T ss_pred ceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEECCC
Confidence 00000 0011111100 00 0 0 00012345677888888888765 55 6999999999998777
Q ss_pred eEEEEEcc---Cc--EEEeCEEEEccCCCCC
Q psy2398 120 IWEVELSN---GK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 120 ~~~v~~~~---g~--~~~~d~vIvAtG~~s~ 145 (433)
.+++++.+ ++ ++.+|+||.|+|.+|.
T Consensus 159 ~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 159 GVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred eEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 77776543 43 5899999999999874
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-10 Score=107.43 Aligned_cols=138 Identities=12% Similarity=0.185 Sum_probs=84.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC--C--CCcccCC----CC-------CCccccce-----------Ee
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD--L--GGVWNSQ----AS-------CGRVYPSL-----------HL 61 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~--~--Gg~~~~~----~~-------~~~~~~~~-----------~~ 61 (433)
+||+||||||+|+++|..|++.|++|+|||+.+. . .|.+... .+ .-.+++.+ ..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 7999999999999999999999999999998752 1 1110000 00 00011111 10
Q ss_pred -ecCCCcccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEE
Q psy2398 62 -ISPKFNTQVPDYPMPDN-YPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAV 138 (433)
Q Consensus 62 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIv 138 (433)
........+........ ......+..+...+.+.+... ++ .++++++|++++.+++.+++++.+|.++++|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i--~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNL--TLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCe--EEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEE
Confidence 00000011111000000 001123445555665555544 34 58889999999988888899999998999999999
Q ss_pred ccCCCCCCC
Q psy2398 139 CNGAQRVAR 147 (433)
Q Consensus 139 AtG~~s~p~ 147 (433)
|+|.+|.-+
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999987543
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-10 Score=108.55 Aligned_cols=137 Identities=17% Similarity=0.265 Sum_probs=85.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccC-CC--CCC---------------------cccCCCC-CCccccceEe
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEME-SD--LGG---------------------VWNSQAS-CGRVYPSLHL 61 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~-~~--~Gg---------------------~~~~~~~-~~~~~~~~~~ 61 (433)
.+||+||||||+|+++|..|++.|++|+|+|+. +. ++. .|..-.. ....+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 589999999999999999999999999999986 21 111 1111000 0011111111
Q ss_pred ecCC--CcccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEE
Q psy2398 62 ISPK--FNTQVPDYPMPDN-YPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIA 137 (433)
Q Consensus 62 ~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vI 137 (433)
.... ....|+....... ......+..+.+.+.+.+... ++ .++++++|+.++.+++.+.|++.+|+++++|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v--~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNV--TLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCe--EEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence 1111 0111111000000 001123556666666666554 45 5888999999988878888999888899999999
Q ss_pred EccCCCCC
Q psy2398 138 VCNGAQRV 145 (433)
Q Consensus 138 vAtG~~s~ 145 (433)
.|+|.+|.
T Consensus 162 gADG~~S~ 169 (405)
T PRK08850 162 GADGANSW 169 (405)
T ss_pred EeCCCCCh
Confidence 99999764
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-10 Score=106.67 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=83.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---------CCcccCCCC----CCccc-cceEeecCC--Ccc--
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---------GGVWNSQAS----CGRVY-PSLHLISPK--FNT-- 68 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---------Gg~~~~~~~----~~~~~-~~~~~~~~~--~~~-- 68 (433)
++||+||||||+|+++|..|++. ++|+++|+.+.. |+....+.- .-... +......+. .+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 47999999999999999999999 999999988743 221111000 00000 000000000 000
Q ss_pred cCCC-CCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEccCCC
Q psy2398 69 QVPD-YPMPDNYPV-YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQ 143 (433)
Q Consensus 69 ~~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~-~~g~--~~~~d~vIvAtG~~ 143 (433)
.+.. ......... ...+.++.+.+.+.. ..++ .+++++.|+.++.+++.|.|++ .++. ++++|.||.|+|.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0100 000001111 256788888777643 4455 5889999999988888898886 4554 58999999999997
Q ss_pred CCC
Q psy2398 144 RVA 146 (433)
Q Consensus 144 s~p 146 (433)
|..
T Consensus 157 S~v 159 (351)
T PRK11445 157 SMV 159 (351)
T ss_pred cHH
Confidence 643
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=105.54 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=83.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC---CcccCCCC----------------CCccccceEeecCCCcc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG---GVWNSQAS----------------CGRVYPSLHLISPKFNT 68 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G---g~~~~~~~----------------~~~~~~~~~~~~~~~~~ 68 (433)
+||+|||||++|+++|..|++.|++|+|||+.+.+. ........ .+...............
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 489999999999999999999999999999987542 11111000 00001111111111100
Q ss_pred cCCC-CCCC--CCCCC-CCCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeEEEEEccC-----cEEEeCEEEE
Q psy2398 69 QVPD-YPMP--DNYPV-YPNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIWEVELSNG-----KKKKYDFIAV 138 (433)
Q Consensus 69 ~~~~-~~~~--~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-----~~~~~d~vIv 138 (433)
.+.. .... ..++. ...+.++.+.|.+.+.+ .+. ..++++++|+.++.+++...+.+.++ .++.+|.||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEE
Confidence 0000 0000 01111 24578888888776644 453 25899999999987765555655442 3789999999
Q ss_pred ccCCCCCC
Q psy2398 139 CNGAQRVA 146 (433)
Q Consensus 139 AtG~~s~p 146 (433)
|+|.+|.-
T Consensus 160 ADG~~S~v 167 (413)
T PRK07538 160 ADGIHSAV 167 (413)
T ss_pred CCCCCHHH
Confidence 99998753
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-10 Score=108.83 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=83.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcc----------cCCC-C---CCccccc----------e
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVW----------NSQA-S---CGRVYPS----------L 59 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~----------~~~~-~---~~~~~~~----------~ 59 (433)
++||+||||||+|+++|..|+++ |++|+|||+........ .... . .-.+++. .
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 48999999999999999999998 99999999953211000 0000 0 0001111 1
Q ss_pred EeecCCCc--ccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCE
Q psy2398 60 HLISPKFN--TQVPDYPMPDNYP-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDF 135 (433)
Q Consensus 60 ~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~ 135 (433)
........ ..+.......... ....+..+.+.+.+.+... ++ .++++++|+.++.+++.|.|++.++.++.+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERTQGSVRVTLDDGETLTGRL 160 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence 11000000 0000000000000 1234566677777666553 45 58889999999887888999998888899999
Q ss_pred EEEccCCCCC
Q psy2398 136 IAVCNGAQRV 145 (433)
Q Consensus 136 vIvAtG~~s~ 145 (433)
||.|+|.+|.
T Consensus 161 vI~AdG~~S~ 170 (395)
T PRK05732 161 LVAADGSHSA 170 (395)
T ss_pred EEEecCCChh
Confidence 9999999763
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=111.61 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=85.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC---CcccCCCCCC-------ccccceEeecCCCcccCCCCC-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG---GVWNSQASCG-------RVYPSLHLISPKFNTQVPDYP- 74 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G---g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~- 74 (433)
..+||+||||||+|+++|..|++.|++|+++|+..... |.|...-... ..|+..... +++..
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~-------~~~~~~ 179 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVY-------LDDDKP 179 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEE-------ecCCce
Confidence 45899999999999999999999999999999865432 3443210000 001111111 11100
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEccCcEEEeCEEEEccCCCC
Q psy2398 75 MPDNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 75 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.....+ ....+..+.+.+.+.+...++ .+ ++++|+.+..+++.+. +++.++.++.++.||+|+|.+|
T Consensus 180 ~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 180 IMIGRAYGRVSRTLLHEELLRRCVESGV--SY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred eeccCcccEEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000111 235678888999888887777 34 6889999987656554 4556777899999999999976
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=110.15 Aligned_cols=139 Identities=18% Similarity=0.300 Sum_probs=88.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc---cCCCC----------------CCccccce-EeecC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW---NSQAS----------------CGRVYPSL-HLISP 64 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~---~~~~~----------------~~~~~~~~-~~~~~ 64 (433)
+..+||+||||||+|+++|..|++.|++|+|||+.+...... ..... .+..+... .....
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 456799999999999999999999999999999987542210 00000 00001100 01111
Q ss_pred CCcccCCCCCCC-CCCCC--CCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEc--cCc-EEEeCEEE
Q psy2398 65 KFNTQVPDYPMP-DNYPV--YPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS--NGK-KKKYDFIA 137 (433)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g~-~~~~d~vI 137 (433)
.....++..+.. ..++. ...+..+.+++.+.+.+. ++ .++++++|+.++.+++.+.+++. ++. ++.+|+||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v--~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vV 178 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI--DLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVI 178 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEE
Confidence 111111111100 11111 145677888888888776 44 68999999999988777777654 343 68999999
Q ss_pred EccCCCCC
Q psy2398 138 VCNGAQRV 145 (433)
Q Consensus 138 vAtG~~s~ 145 (433)
.|+|.+|.
T Consensus 179 gADG~~S~ 186 (547)
T PRK08132 179 ACDGARSP 186 (547)
T ss_pred ECCCCCcH
Confidence 99999774
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=110.73 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=83.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC--C-----------------CCc--cccceEeecC--
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA--S-----------------CGR--VYPSLHLISP-- 64 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~--~-----------------~~~--~~~~~~~~~~-- 64 (433)
+||+|||||++|+++|..|+++|++|+|||+.+.....-.-.. + ... ..........
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 6999999999999999999999999999999876421100000 0 000 0000011100
Q ss_pred ---------CCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---C--cE
Q psy2398 65 ---------KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---G--KK 130 (433)
Q Consensus 65 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g--~~ 130 (433)
.....+. ............+..+.+.|.+.++..++ .++++++++.++.+.+++.+.+.+ + .+
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~ 158 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQDDDGVTVVVRDGEDGEEET 158 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEETTEEEEEEEETCTCEEEE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeecccccccccccccccccccCCceeE
Confidence 0000010 00011111234578899999999988886 699999999999887776655543 2 26
Q ss_pred EEeCEEEEccCCCCC
Q psy2398 131 KKYDFIAVCNGAQRV 145 (433)
Q Consensus 131 ~~~d~vIvAtG~~s~ 145 (433)
+++|.||.|+|.+|.
T Consensus 159 i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 159 IEADLVVGADGAHSK 173 (356)
T ss_dssp EEESEEEE-SGTT-H
T ss_pred EEEeeeecccCcccc
Confidence 899999999999874
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-10 Score=105.58 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=88.1
Q ss_pred cEEEECCChHHHHHHHHH--HhcCCCeEEEccCCCC--CC--cccCCCCC--------CccccceEeecCCCcccCCCCC
Q psy2398 9 KLCIIGGGPLGIGLGREL--SEGNINYDLYEMESDL--GG--VWNSQASC--------GRVYPSLHLISPKFNTQVPDYP 74 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l--~~~g~~v~v~e~~~~~--Gg--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 74 (433)
||+|||||++|+++|.+| ++.|.+|+++|+.... .. +|...... ...|+......+......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~---- 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL---- 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE----
Confidence 899999999999999999 7779999999987765 21 33332211 011222222211111111
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCC
Q psy2398 75 MPDNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 75 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
...+ ....+..+.+++.+.+...+. +.++++|++|+.+++.+.+++.+|.+++++.||.|+|..
T Consensus 77 --~~~~Y~~i~~~~f~~~l~~~~~~~~~---~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 77 --IDYPYCMIDRADFYEFLLERAAAGGV---IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred --cccceEEEEHHHHHHHHHHHhhhCCe---EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 0111 245688899998888884443 778999999999888899999999899999999999963
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-10 Score=107.00 Aligned_cols=137 Identities=23% Similarity=0.250 Sum_probs=81.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---C---C-cccCCC--------------CCCccccceEeecCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---G---G-VWNSQA--------------SCGRVYPSLHLISPKF 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---G---g-~~~~~~--------------~~~~~~~~~~~~~~~~ 66 (433)
+||+||||||+|+++|..|++.|++|+|+|+.+.. + . ....+. ..+.....+.+.....
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 79999999999999999999999999999998741 1 1 100000 0011111222111111
Q ss_pred ccc--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE-eCCeEEEEE-ccCc--EEEeCEEEEcc
Q psy2398 67 NTQ--VPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ-YEDIWEVEL-SNGK--KKKYDFIAVCN 140 (433)
Q Consensus 67 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~-~~~~~~v~~-~~g~--~~~~d~vIvAt 140 (433)
... +....... .....++..+.+.+.+.+...++ .++++++++.++. +++...|++ .+|+ ++++|.||.|+
T Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~l~~~Ll~~a~~~gv--~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgAD 159 (392)
T PRK08243 83 RHRIDLTELTGGR-AVTVYGQTEVTRDLMAARLAAGG--PIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCD 159 (392)
T ss_pred EEEeccccccCCc-eEEEeCcHHHHHHHHHHHHhCCC--eEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECC
Confidence 111 11100000 00112345555566555666666 5899999999876 455556666 3553 58999999999
Q ss_pred CCCCCCC
Q psy2398 141 GAQRVAR 147 (433)
Q Consensus 141 G~~s~p~ 147 (433)
|.+|.-+
T Consensus 160 G~~S~vR 166 (392)
T PRK08243 160 GFHGVSR 166 (392)
T ss_pred CCCCchh
Confidence 9987544
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-10 Score=109.19 Aligned_cols=138 Identities=13% Similarity=0.245 Sum_probs=87.3
Q ss_pred CcEEEECCChHHHHHHHHHHh----cCCCeEEEccCCCCC----------CcccCCC----C------------------
Q psy2398 8 IKLCIIGGGPLGIGLGRELSE----GNINYDLYEMESDLG----------GVWNSQA----S------------------ 51 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~----~g~~v~v~e~~~~~G----------g~~~~~~----~------------------ 51 (433)
+||+||||||+|+++|..|++ .|++|+|||+.+... |.+.... +
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999998 799999999943211 1000000 0
Q ss_pred CCccccceEeecCCC--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC---CCcceEeCcEEEEEEEe-------CC
Q psy2398 52 CGRVYPSLHLISPKF--NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFD---VYNHSIFNTEVINLEQY-------ED 119 (433)
Q Consensus 52 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~~~~V~~v~~~-------~~ 119 (433)
....+..+....... ...|+............++..+.+.+.+.+...+ + .++++++|+.++.. +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v--~i~~~~~v~~i~~~~~~~~~~~~ 158 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNV--KILNPARLISVTIPSKYPNDNSN 158 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCe--EEecCCeeEEEEeccccccCCCC
Confidence 001111121111111 1122211100111112457778888888777664 4 58899999999752 45
Q ss_pred eEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 120 IWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 120 ~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.++|++.+|+++++|.||.|+|.+|.-+
T Consensus 159 ~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 159 WVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred ceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 6888888898999999999999987544
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=104.91 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=82.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCC----------C---ccccceEeecCCCcc-cCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASC----------G---RVYPSLHLISPKFNT-QVPDY 73 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~----------~---~~~~~~~~~~~~~~~-~~~~~ 73 (433)
+||+||||||+|++||..|++.|++|+++|+....+..|....+. . ..+......++.... .+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999976543222211110 0 001122222222110 11110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE---eCCeEEEEEc--c-----C--cEEEeCEEEEccC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ---YEDIWEVELS--N-----G--KKKKYDFIAVCNG 141 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~---~~~~~~v~~~--~-----g--~~~~~d~vIvAtG 141 (433)
.....+.....+..+.+++.+.+.+.|+ .++.+ ++..+.. .++.+.|+.. + + .+++++.||.|+|
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG 157 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGA--TLING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADG 157 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCC
Confidence 0011111236789999999999998887 46555 4666643 2455666532 1 2 3689999999999
Q ss_pred CCC
Q psy2398 142 AQR 144 (433)
Q Consensus 142 ~~s 144 (433)
.+|
T Consensus 158 ~~S 160 (398)
T TIGR02028 158 ANS 160 (398)
T ss_pred cch
Confidence 965
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-10 Score=106.73 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=86.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---CCcccCCCC----------------CCccccceEeecCCCc-
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---GGVWNSQAS----------------CGRVYPSLHLISPKFN- 67 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---Gg~~~~~~~----------------~~~~~~~~~~~~~~~~- 67 (433)
.+|+|||||++|+++|..|++.|++|+|+|+.+.. |........ .+.....+........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999998753 211111110 0000011111110000
Q ss_pred --ccCC--CCCCCCCCCC--CCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEc---cCcEEEeCEEE
Q psy2398 68 --TQVP--DYPMPDNYPV--YPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIA 137 (433)
Q Consensus 68 --~~~~--~~~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g~~~~~d~vI 137 (433)
.... +.....+... ...+..+.+.|.+.+... ++ .++++++|+.++.+++.+.+++. +++++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEE
Confidence 0000 0000000111 246778888888777653 45 58999999999887777887763 34578999999
Q ss_pred EccCCCCCCC
Q psy2398 138 VCNGAQRVAR 147 (433)
Q Consensus 138 vAtG~~s~p~ 147 (433)
.|+|.+|.-+
T Consensus 161 gADG~~S~vR 170 (400)
T PRK06475 161 ACDGVWSMLR 170 (400)
T ss_pred ECCCccHhHH
Confidence 9999987543
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-10 Score=106.48 Aligned_cols=134 Identities=20% Similarity=0.285 Sum_probs=87.1
Q ss_pred EEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCC------ccccceEee---cCCC----cccCC------
Q psy2398 11 CIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCG------RVYPSLHLI---SPKF----NTQVP------ 71 (433)
Q Consensus 11 ~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~------~~~~~~~~~---~~~~----~~~~~------ 71 (433)
+|||||++|++||..|++.|.+|+|+|+.+.+|+.+....... ...+.+... .+.. +..|+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999998876543221100 000000000 0000 00000
Q ss_pred ---CCCC----CCCCCCCC---CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccC
Q psy2398 72 ---DYPM----PDNYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 72 ---~~~~----~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG 141 (433)
.... ......|+ ....+.+.+.+.+++.++ .++++++|+.++.+++.|.+++. +.++.+|.||+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~~~~~~v~~~-~~~i~ad~VIlAtG 157 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKDDNGFGVETS-GGEYEADKVILATG 157 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEecCCeEEEEEC-CcEEEcCEEEECCC
Confidence 0000 00111122 357788888888888887 58999999999887778888874 45789999999999
Q ss_pred CCCCCC
Q psy2398 142 AQRVAR 147 (433)
Q Consensus 142 ~~s~p~ 147 (433)
.++.|.
T Consensus 158 ~~s~p~ 163 (400)
T TIGR00275 158 GLSYPQ 163 (400)
T ss_pred CcccCC
Confidence 977553
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=106.26 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=82.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCc---ccCCCC------C----------C----ccccceEe--
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGV---WNSQAS------C----------G----RVYPSLHL-- 61 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~---~~~~~~------~----------~----~~~~~~~~-- 61 (433)
.+|+|||||++||++|..|+++| ++|+|||+.+.++.. ...... . . ..+.....
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 699999998775321 111100 0 0 00000000
Q ss_pred ecCCCcccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEcc
Q psy2398 62 ISPKFNTQVPDYPMPDNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAt 140 (433)
..... ..+.......... ....+.++.+.+.+.+.. ..++++++|+.++.++++|++++.++.++.+|.||+|+
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgAD 155 (414)
T TIGR03219 81 RNGSD-ASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGAD 155 (414)
T ss_pred EecCc-cceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECC
Confidence 00000 0000000000010 124466666666554422 24789999999998888899999998889999999999
Q ss_pred CCCCC
Q psy2398 141 GAQRV 145 (433)
Q Consensus 141 G~~s~ 145 (433)
|.+|.
T Consensus 156 G~~S~ 160 (414)
T TIGR03219 156 GIKSA 160 (414)
T ss_pred CccHH
Confidence 99875
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=105.68 Aligned_cols=138 Identities=20% Similarity=0.303 Sum_probs=83.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC----CCCcccCCC------CCC---ccccceEeecCCCc-ccC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD----LGGVWNSQA------SCG---RVYPSLHLISPKFN-TQV 70 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~----~Gg~~~~~~------~~~---~~~~~~~~~~~~~~-~~~ 70 (433)
..++||+||||||+|+++|..|++.|++|+++|+... .||...... +.. .....+.+.++... ..+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~ 116 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 116 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEe
Confidence 3468999999999999999999999999999998753 232211100 000 00111122222111 111
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe---CCeEEEEEcc---------CcEEEeCEEEE
Q psy2398 71 PDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSN---------GKKKKYDFIAV 138 (433)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~~~---------g~~~~~d~vIv 138 (433)
.....+..+.....+..+.++|.+.+.+.|. .++.. +++.++.. ++.+.|++.+ +.++.+|.||.
T Consensus 117 ~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIg 193 (450)
T PLN00093 117 GKTLKPHEYIGMVRREVLDSFLRERAQSNGA--TLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIG 193 (450)
T ss_pred cccCCCCCeEEEecHHHHHHHHHHHHHHCCC--EEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEE
Confidence 1100011111126789999999999998887 35544 57777642 3456676532 24689999999
Q ss_pred ccCCCCC
Q psy2398 139 CNGAQRV 145 (433)
Q Consensus 139 AtG~~s~ 145 (433)
|+|.+|.
T Consensus 194 ADG~~S~ 200 (450)
T PLN00093 194 ADGANSR 200 (450)
T ss_pred cCCcchH
Confidence 9998663
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=104.42 Aligned_cols=136 Identities=21% Similarity=0.304 Sum_probs=80.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC------CC-cccCCC-C-------------CCccccceEeecCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL------GG-VWNSQA-S-------------CGRVYPSLHLISPKF 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~------Gg-~~~~~~-~-------------~~~~~~~~~~~~~~~ 66 (433)
+||+|||||++|+++|..|++.|++|+|||+.+.. |. ....+. . .+.....+.......
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 79999999999999999999999999999998741 11 100000 0 011111111111111
Q ss_pred cc--cCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE-eCCeEEEEEc-cCc--EEEeCEEEEc
Q psy2398 67 NT--QVPDYPMPDNYPV-YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ-YEDIWEVELS-NGK--KKKYDFIAVC 139 (433)
Q Consensus 67 ~~--~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~-~~~~~~v~~~-~g~--~~~~d~vIvA 139 (433)
.. .+.... ..... ...+..+.+.+.+.+...+. .++++++++.+.. +.....|++. +|+ ++++|.||.|
T Consensus 83 ~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~g~--~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGA 158 (390)
T TIGR02360 83 RFRIDLKALT--GGKTVMVYGQTEVTRDLMEAREAAGL--TTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGC 158 (390)
T ss_pred EEEEeccccC--CCceEEEeCHHHHHHHHHHHHHhcCC--eEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEEC
Confidence 11 111110 00000 11344556666666666665 5788888777754 3445566664 664 5899999999
Q ss_pred cCCCCCCC
Q psy2398 140 NGAQRVAR 147 (433)
Q Consensus 140 tG~~s~p~ 147 (433)
+|.+|.-+
T Consensus 159 DG~~S~VR 166 (390)
T TIGR02360 159 DGFHGVSR 166 (390)
T ss_pred CCCchhhH
Confidence 99988543
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.3e-10 Score=106.46 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEccCcEEEeCEEEEccCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g~~~~~d~vIvAtG~~s~p 146 (433)
....+.+.+.+.+++.|+ .++.+++|++++.+++.|+ |.+.+|+ +.+|.||+|+|.++..
T Consensus 145 ~~~~l~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGV--EIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred cccchhhhhHHHHHHhhh--hccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 468889999999999888 6999999999999999998 9999987 9999999999996533
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=91.77 Aligned_cols=128 Identities=13% Similarity=0.237 Sum_probs=83.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC-CcccCCCCCCccccceEeecCCCcccCCCCCCCC--CC--CCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG-GVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPD--NY--PVY 82 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~ 82 (433)
.||+|+||||+||+||++|++.|++|+|||++-.+| |.|.-. .+++.+....+.... +.++..+. .. ...
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GG----mlf~~iVv~~~a~~i-L~e~gI~ye~~e~g~~v 105 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGG----MLFNKIVVREEADEI-LDEFGIRYEEEEDGYYV 105 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccc----cccceeeecchHHHH-HHHhCCcceecCCceEE
Confidence 699999999999999999999999999999988765 456544 345555555443211 11111111 11 112
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC--------eEEEEEc-----cCcEEEeCEEEEccCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--------IWEVELS-----NGKKKKYDFIAVCNGA 142 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~--------~~~v~~~-----~g~~~~~d~vIvAtG~ 142 (433)
....++..-+...+-..+. +|+..+.|+.+-..++ .|+.... |-.++++++||-|||+
T Consensus 106 ~ds~e~~skl~~~a~~aGa--ki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 106 ADSAEFASKLAARALDAGA--KIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred ecHHHHHHHHHHHHHhcCc--eeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 3345566666555656665 6787888888876533 1332222 2235899999999998
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=98.12 Aligned_cols=42 Identities=31% Similarity=0.444 Sum_probs=39.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
.+++|||||++|++||+.|++.|++|.++||.+.+||.....
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 689999999999999999999999999999999999976543
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=102.24 Aligned_cols=132 Identities=15% Similarity=0.232 Sum_probs=87.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcC----CCeEEEccCCCCC---------------------CcccCCCCCCccccce
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGN----INYDLYEMESDLG---------------------GVWNSQASCGRVYPSL 59 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g----~~v~v~e~~~~~G---------------------g~~~~~~~~~~~~~~~ 59 (433)
+..+||+||||||+|+++|..|++.| ++|+++|+.+... |.|... ...+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~---~~~~~~~ 85 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPAD---ATPIEHI 85 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhc---CCcccEE
Confidence 45689999999999999999999987 4699999975321 111110 0111111
Q ss_pred EeecCC----CcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC---cEEE
Q psy2398 60 HLISPK----FNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKK 132 (433)
Q Consensus 60 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g---~~~~ 132 (433)
...... ......+...+. ......+..+.+.|.+.+...++ .+.++++++.++.+++.+++++.++ ++++
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~ 162 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQDADGVTLALGTPQGARTLR 162 (398)
T ss_pred EEecCCCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeecCCeEEEEECCCCcceEEe
Confidence 111100 011111111111 01124578888999888888776 5888999999988888899988754 5799
Q ss_pred eCEEEEccCC
Q psy2398 133 YDFIAVCNGA 142 (433)
Q Consensus 133 ~d~vIvAtG~ 142 (433)
+|.||.|+|.
T Consensus 163 a~lvIgADG~ 172 (398)
T PRK06996 163 ARIAVQAEGG 172 (398)
T ss_pred eeEEEECCCC
Confidence 9999999996
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-10 Score=103.90 Aligned_cols=138 Identities=23% Similarity=0.276 Sum_probs=89.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCC---CCcc-ccce---------------------
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQAS---CGRV-YPSL--------------------- 59 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~---~~~~-~~~~--------------------- 59 (433)
++||+|||||+.|+++|..|++.+ ++|+|+||.+.+|..-..++. ++.. |+.-
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999998 999999999887643322221 0000 0000
Q ss_pred ---EeecCCCcccCCCC---------------CCC-----------CCCC---------------CCCCHHHHHHHHHHH
Q psy2398 60 ---HLISPKFNTQVPDY---------------PMP-----------DNYP---------------VYPNHSMMLDYLRSY 95 (433)
Q Consensus 60 ---~~~~~~~~~~~~~~---------------~~~-----------~~~~---------------~~~~~~~~~~~l~~~ 95 (433)
..+.++....+.+. +.+ .+.| ......++...+...
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~ 162 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEE 162 (429)
T ss_pred CCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHH
Confidence 00000000000000 000 0001 122345566666667
Q ss_pred HHHcCCCcceEeCcEEEEEEEeCC-eEEEEEccCcE-EEeCEEEEccCCCCCC
Q psy2398 96 AKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKK-KKYDFIAVCNGAQRVA 146 (433)
Q Consensus 96 ~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~g~~-~~~d~vIvAtG~~s~p 146 (433)
++..|. .++++++|+.+++.++ .+.+.+.+|++ ++++.||+|.|.++.+
T Consensus 163 a~~~g~--~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 163 AQANGV--ELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHcCC--EEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 777777 6999999999999866 67888888866 9999999999998654
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-09 Score=75.96 Aligned_cols=80 Identities=31% Similarity=0.353 Sum_probs=66.7
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHHH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMM 88 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (433)
+|+|||||+.|+.+|..|++.|.+|+++++.+.+. ..-..++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--------------------------------------~~~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--------------------------------------PGFDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--------------------------------------TTSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--------------------------------------hhcCHHH
Confidence 58999999999999999999999999999987651 0113667
Q ss_pred HHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC
Q psy2398 89 LDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG 128 (433)
Q Consensus 89 ~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g 128 (433)
.+++.+..++.++ ++++++.+.+++.++++++|+++||
T Consensus 43 ~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 43 AKILEEYLRKRGV--EVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHTTE--EEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHHHCCC--EEEeCCEEEEEEEeCCEEEEEEecC
Confidence 7888888888888 6999999999999865566887765
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.2e-09 Score=104.83 Aligned_cols=143 Identities=21% Similarity=0.300 Sum_probs=85.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCC---CCcccCCCC----------------CCccccceEeecC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDL---GGVWNSQAS----------------CGRVYPSLHLISP 64 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~---Gg~~~~~~~----------------~~~~~~~~~~~~~ 64 (433)
...+||+||||||+||++|..|++. |++|+|||+.+.. |........ .+..........+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 3468999999999999999999995 9999999988642 110000000 0000011110000
Q ss_pred -----CCcc---cCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC---CeEEEEEc-----
Q psy2398 65 -----KFNT---QVPDYPMP-DNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE---DIWEVELS----- 126 (433)
Q Consensus 65 -----~~~~---~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~---~~~~v~~~----- 126 (433)
..+. .+.+.... ..++ ...++..+.+.+.+.+.+.+..-.++++++++.++.++ ..+++++.
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 0000 00111100 0111 12456678888888887766432478899999998763 33667664
Q ss_pred -cC--cEEEeCEEEEccCCCCCCC
Q psy2398 127 -NG--KKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 127 -~g--~~~~~d~vIvAtG~~s~p~ 147 (433)
+| +++++|+||.|.|.+|.-+
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR 213 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVR 213 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHH
Confidence 24 4789999999999987544
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=98.52 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-----cEEEeCEEEEccCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-----KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-----~~~~~d~vIvAtG~~s~ 145 (433)
..+...+...++..|+ .+..+++|++++.+++.|.+.+.++ .++++|.||+|+|.++.
T Consensus 197 ~~~~~~l~~~a~~~G~--~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 197 HKFTTGLAAACARLGV--QFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 4555666677777787 5888999999988777787765443 26899999999999753
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=102.62 Aligned_cols=137 Identities=15% Similarity=0.214 Sum_probs=84.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC-C-C-Cccc----CCCC-----------------CCccccceEe
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD-L-G-GVWN----SQAS-----------------CGRVYPSLHL 61 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~-~-G-g~~~----~~~~-----------------~~~~~~~~~~ 61 (433)
++.+|+|||||++||++|..|++.|++|+|||+.+. . + |.+. .... ...+......
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 458999999999999999999999999999999752 1 1 1110 0000 0000000000
Q ss_pred ----ec--CCCcccCCCCCC-CC-CCC--CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEE
Q psy2398 62 ----IS--PKFNTQVPDYPM-PD-NYP--VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK 131 (433)
Q Consensus 62 ----~~--~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~ 131 (433)
.. ......++.... .. ..+ ....+.++.+.|.+ ..+.. .++++++|+.++.+++.+++++.++.++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~---alg~~-~i~~g~~V~~I~~~~d~VtV~~~dG~ti 235 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILAR---AVGED-VIRNESNVVDFEDSGDKVTVVLENGQRY 235 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHh---hCCCC-EEEcCCEEEEEEEeCCEEEEEECCCCEE
Confidence 00 000111111110 00 001 12356667766643 33332 4678999999998888899999998889
Q ss_pred EeCEEEEccCCCCCC
Q psy2398 132 KYDFIAVCNGAQRVA 146 (433)
Q Consensus 132 ~~d~vIvAtG~~s~p 146 (433)
.+|.||.|.|.+|.-
T Consensus 236 ~aDlVVGADG~~S~v 250 (668)
T PLN02927 236 EGDLLVGADGIWSKV 250 (668)
T ss_pred EcCEEEECCCCCcHH
Confidence 999999999998743
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=104.18 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
...+.+.+.+.+++.|+ .++++++|..++.+++.|.|.+.++ ++.+|.||+|+|.++
T Consensus 148 ~~~l~~aL~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGG--EIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCC--EEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 56677777777777777 5888999999988777788888776 699999999999975
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.7e-09 Score=98.79 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
....+.+.+.+.++..++ .+..+++|++++.+++.+.|.+.++ ++.+|.||+|+|.++.
T Consensus 143 ~p~~~~~~l~~~~~~~g~--~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 143 YAEKALRALQELAEAHGA--TVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTS 201 (380)
T ss_pred cHHHHHHHHHHHHHHcCC--EEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchH
Confidence 456677777777887787 5888999999998777888888766 6899999999998643
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=98.12 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
....+...+.+.+.+.++ .++++++|+.++.+++.|.|+++++ ++.+|.||+|+|.++....+
T Consensus 147 ~p~~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 147 RPELAIKAHLRLAREAGA--ELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred cHHHHHHHHHHHHHHCCC--EEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcc
Confidence 345566666666667777 5888999999998877888988877 69999999999997544333
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=100.65 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---Cc--EEEeCEEEEccCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g~--~~~~d~vIvAtG~~s~ 145 (433)
..+...+...+.+.|. .+..+++|+.+..+++.|.+++.+ ++ ++.++.||+|+|.++.
T Consensus 155 ~rl~~~l~~~A~~~Ga--~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGA--EILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCC--EEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 4444455556777787 588899999998877778887654 42 5899999999999763
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=97.50 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=76.9
Q ss_pred cEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCC--cccCCCCCCc-----cccc-eEeecCCCcccCCCCCCCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGG--VWNSQASCGR-----VYPS-LHLISPKFNTQVPDYPMPDN 78 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg--~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (433)
||+|||||++|+++|..|++. |++|+++|+.+.+|| +|......-. .+.. .....+.....+++......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887776 4433211000 0000 00011111111111111111
Q ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 79 YP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 79 ~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.+ ....+.++.+++.+.+ +. .++++++|+.++ .+.+++ .+|.++++|.||.|+|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l---~~--~i~~~~~V~~v~--~~~v~l--~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAF---PE--GVILGRKAVGLD--ADGVDL--APGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhh---cc--cEEecCEEEEEe--CCEEEE--CCCCEEEeeEEEECCCCCC
Confidence 11 2334677777765433 33 277788999884 344444 6788899999999999853
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.94 E-value=7e-09 Score=87.43 Aligned_cols=129 Identities=15% Similarity=0.222 Sum_probs=74.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC-cccCCCCCCccccceEeecCCCcccCCCCCCC--C--CCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG-VWNSQASCGRVYPSLHLISPKFNTQVPDYPMP--D--NYPV 81 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~ 81 (433)
.+||+||||||+||+||+.|++.|++|++||++..+|| .|.-. .+++......+.... +.++..+ + +...
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg----~lf~~iVVq~~a~~i-L~elgi~y~~~~~g~~ 91 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG----MLFNKIVVQEEADEI-LDELGIPYEEYGDGYY 91 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C----TT---EEEETTTHHH-HHHHT---EE-SSEEE
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc----cccchhhhhhhHHHH-HHhCCceeEEeCCeEE
Confidence 47999999999999999999999999999999988775 46543 345656555543211 1111111 0 1112
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeE---EEEEc---------cCcEEEeCEEEEccCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIW---EVELS---------NGKKKKYDFIAVCNGA 142 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~---~v~~~---------~g~~~~~d~vIvAtG~ 142 (433)
.....++...+...+-+-|. +++-.+.|+.+-..+ +.. .+... |-.+++++.||-|||+
T Consensus 92 v~d~~~~~s~L~s~a~~aGa--kifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 92 VADSVEFTSTLASKAIDAGA--KIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp ES-HHHHHHHHHHHHHTTTE--EEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred EEcHHHHHHHHHHHHhcCCC--EEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 23456666766666655666 577788888887654 322 22211 1236899999999998
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=99.61 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=79.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-CCCCc-ccCCCC---CCccccceEeec-------CCCcccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-DLGGV-WNSQAS---CGRVYPSLHLIS-------PKFNTQVPDY 73 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~~Gg~-~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~ 73 (433)
..+||+|||||++|+.||..+++.|.+|+++|+.. .+|+. |+.... .+.....+.... ......+...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 45999999999999999999999999999999874 56542 111100 000000000000 0000001000
Q ss_pred CC---CCCC-C-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeE-EEEEccCcEEEeCEEEEccCCCC
Q psy2398 74 PM---PDNY-P-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 74 ~~---~~~~-~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.. +..+ + ....+..+...+...+... ++ .+ +++.|+.+..+++.. -|.+.+|..+.++.||+|||.++
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV--~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNL--DL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCc--EE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 00 0000 0 1234555667777766655 55 23 567888887655543 47778888899999999999843
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=98.92 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC----cEEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG----KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g----~~~~~d~vIvAtG~~s~ 145 (433)
...+...+...+...|. .+..+++|+.+..+++.|.|++.++ .++.++.||+|+|.++.
T Consensus 154 ~~rl~~~l~~~a~~~Ga--~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGA--TILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCC--EEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 34455555566777787 5888999999988777888887654 25899999999999753
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-08 Score=96.67 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=35.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG 43 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G 43 (433)
++..+||+|||||++|+++|..|++. +.+|+|+||.+.+|
T Consensus 3 ~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 3 KSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 45678999999999999999999998 89999999944543
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-08 Score=95.38 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=85.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+.+++|||||+.|+..|..+++.|.+|+|+|+.+.+- | .-
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL--------------------------------p------~~ 212 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL--------------------------------P------GE 212 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------------C------cC
Confidence 346789999999999999999999999999999988651 0 11
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCCCCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p~~p~i 151 (433)
.+++.+.+....++.++ .++++++++.++..++...++++++. ++.+|.|++|+|. .|+...+
T Consensus 213 D~ei~~~~~~~l~~~gv--~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR--~Pn~~~L 277 (454)
T COG1249 213 DPEISKELTKQLEKGGV--KILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR--KPNTDGL 277 (454)
T ss_pred CHHHHHHHHHHHHhCCe--EEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC--ccCCCCC
Confidence 36788888888888667 58889999999887665778887765 6889999999998 7777643
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-08 Score=95.20 Aligned_cols=102 Identities=22% Similarity=0.202 Sum_probs=81.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||++|+.+|..|.+.|.+|+++|+.+.+.. . ..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~~ 210 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP------------------------------------G--ED 210 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC------------------------------------C--CC
Confidence 347899999999999999999999999999998764310 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.+++.+.+.+.++ .++.+|.||+|+|. .|+..
T Consensus 211 ~~~~~~~~~~l~~~gi--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~--~p~~~ 272 (461)
T TIGR01350 211 AEVSKVVAKALKKKGV--KILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR--KPNTE 272 (461)
T ss_pred HHHHHHHHHHHHHcCC--EEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC--cccCC
Confidence 4456667777777787 5899999999988777777776666 46999999999998 66655
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=104.58 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
....+.+.+.+.+.. ++ .++++++|+.++..++.|.|.++++..+.+|.||+|+|.++.
T Consensus 406 ~p~~l~~aL~~~a~~-Gv--~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 406 CPAELCRALLALAGQ-QL--TIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CHHHHHHHHHHhccc-Cc--EEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 345666666666666 66 588899999999888889998888876789999999999754
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=98.84 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHH----cCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKK----FDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~----~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
....+.+.+.+.+++ .|..-.++++++|+.++.. ++.|.|++.+| ++.+|+||+|+|.++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 345566666666776 6632258899999999987 66799998877 5999999999999864
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=92.32 Aligned_cols=130 Identities=19% Similarity=0.342 Sum_probs=74.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCCCC-cccCCCCCCccccceEeecC--CCcccCCCCCCCC--CC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDLGG-VWNSQASCGRVYPSLHLISP--KFNTQVPDYPMPD--NY 79 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~Gg-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~ 79 (433)
..+||+|||||++|+++|..|++. |++|+++|+....|| .|.... .+.......+ ..+..+ ..++.. .+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~----l~~~~vv~~~a~e~LeEl-GV~fd~~dgy 165 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQ----LFSAMVVRKPAHLFLDEL-GVPYDEQENY 165 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcc----cccccccccHHHHHHHHc-CCCcccCCCe
Confidence 357999999999999999999976 899999999888765 453221 1111111111 000000 111111 11
Q ss_pred CCCCCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCe-------EEEEEcc--C------cEEEeCEEEEccCC
Q psy2398 80 PVYPNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI-------WEVELSN--G------KKKKYDFIAVCNGA 142 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~-------~~v~~~~--g------~~~~~d~vIvAtG~ 142 (433)
.......++...+...+.+ .++ +++.++.++.+..+++. |.+...+ + ..+.++.||+|||+
T Consensus 166 ~vv~ha~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 166 VVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred eEecchHHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 1111223444455544433 455 57778888888765443 3222111 1 25899999999996
|
|
| >KOG2614|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-08 Score=90.83 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
+.+|+|||||++|+++|..|.++|++|+|+|++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 469999999999999999999999999999997765
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-07 Score=92.42 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=81.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC-----CCC-------------ccccceE-------
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA-----SCG-------------RVYPSLH------- 60 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~-----~~~-------------~~~~~~~------- 60 (433)
..+||+|||+|.+|++||..+++.|.+|+|+||.+..||.-.... ..+ ..+..+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 357999999999999999999999999999999988776321100 000 0000000
Q ss_pred ---------eecC---CCc----ccCCCCC------CCC-CCC--CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEE
Q psy2398 61 ---------LISP---KFN----TQVPDYP------MPD-NYP--VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE 115 (433)
Q Consensus 61 ---------~~~~---~~~----~~~~~~~------~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~ 115 (433)
-++. .++ ..|.... .+. +.+ .......+.+.+.+.+++.++ .+++++.|+.+.
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv--~i~~~t~v~~l~ 217 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKI--PLFVNADVTKIT 217 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCC--eEEeCCeeEEEE
Confidence 0000 000 0010000 000 000 011234566777777777787 589999999998
Q ss_pred EeCCe---EEEEEccC--cEEEeCEEEEccCCCC
Q psy2398 116 QYEDI---WEVELSNG--KKKKYDFIAVCNGAQR 144 (433)
Q Consensus 116 ~~~~~---~~v~~~~g--~~~~~d~vIvAtG~~s 144 (433)
.+++. +.+...++ .++.++.||+|||.+.
T Consensus 218 ~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 218 EKDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred ecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 65543 34443443 2588999999999864
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=92.45 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=81.7
Q ss_pred cEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCcccCCCC-----CCc-------------cccce------Ee--
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGVWNSQAS-----CGR-------------VYPSL------HL-- 61 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~~~~~~~-----~~~-------------~~~~~------~~-- 61 (433)
||+|||||.+|++||..++++| .+|+|+||.+..||.-..... .+. .+... ..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999998877654221100 000 00000 00
Q ss_pred --------ecC---CCcc-c----CCCC------CCCC-CCC--CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE
Q psy2398 62 --------ISP---KFNT-Q----VPDY------PMPD-NYP--VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ 116 (433)
Q Consensus 62 --------~~~---~~~~-~----~~~~------~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~ 116 (433)
.+. .++. . +... ..+. ..+ .......+.+.+.+.+++.++ +++++++|+++..
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv--~i~~~~~v~~l~~ 158 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI--DTRLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC--EEEeCCEeeEeEE
Confidence 000 0000 0 0000 0000 000 112346788888888888888 6999999999987
Q ss_pred e-CC---eEEEEEccCc--EEEeCEEEEccCCCCC
Q psy2398 117 Y-ED---IWEVELSNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 117 ~-~~---~~~v~~~~g~--~~~~d~vIvAtG~~s~ 145 (433)
+ ++ ++.+...++. .+.++.||+|||.++.
T Consensus 159 ~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 159 DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 5 33 2333333443 3678999999999754
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-07 Score=86.18 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+||+|||+|++|+++|..|++.|.+|+++|+..
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 899999999999999999999999999999863
|
|
| >KOG2820|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-08 Score=87.28 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=96.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC--C---------------------------cccCCCC---
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG--G---------------------------VWNSQAS--- 51 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G--g---------------------------~~~~~~~--- 51 (433)
+....+|+|||||.-|+++|.+|+++|.++.++|+.+-.- | .|.....
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 3456799999999999999999999999999999866321 1 1111110
Q ss_pred ------CCccccce---------------------EeecCCCcccCC-CCCCCCCCC-------CCCCHHHHHHHHHHHH
Q psy2398 52 ------CGRVYPSL---------------------HLISPKFNTQVP-DYPMPDNYP-------VYPNHSMMLDYLRSYA 96 (433)
Q Consensus 52 ------~~~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~l~~~~ 96 (433)
....+.+. .+.+...-..|+ ..++++.+. ++....+....++.++
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 00000000 000000011233 334444443 3445678888899999
Q ss_pred HHcCCCcceEeCcEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 97 KKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 97 ~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
.++|+ -++.+.+|..++.. +....|.|.+|..+.++.+|+++|+|-..-+|.
T Consensus 164 ~~~G~--i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 164 RELGV--IFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHcCe--EEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCc
Confidence 99998 48889999888864 566788888998899999999999975555554
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=92.56 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=77.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC---------C-------------CCccccce----E
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA---------S-------------CGRVYPSL----H 60 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~---------~-------------~~~~~~~~----~ 60 (433)
|+||+|||||.+||+||..+++.|.+|+|+||....+.++.... . ...+.+.+ .
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 37999999999999999999999999999999764322111000 0 00000000 0
Q ss_pred eecC---CCc----ccCCCCCC--CCCCCC-----CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEE
Q psy2398 61 LISP---KFN----TQVPDYPM--PDNYPV-----YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VEL 125 (433)
Q Consensus 61 ~~~~---~~~----~~~~~~~~--~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~ 125 (433)
.+++ .++ ..|..... ...++. -.....+.+.+.+.+++.++ .+... .++.+..+++.+. +..
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~-~v~~l~~~~g~v~Gv~~ 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGV--NFIRG-FAEELAIKNGKAYGVFL 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCC--EEEEe-EeEEEEeeCCEEEEEEE
Confidence 0000 000 01110000 001110 11245678888888888787 35554 7777765555543 333
Q ss_pred ccCcEEEeCEEEEccCCCCC
Q psy2398 126 SNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 126 ~~g~~~~~d~vIvAtG~~s~ 145 (433)
++..+.++.||+|||.++.
T Consensus 158 -~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 -DGELLKFDATVIATGGFSG 176 (466)
T ss_pred -CCEEEEeCeEEECCCcCcC
Confidence 5567899999999999754
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.9e-08 Score=94.23 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
....+.+.+.+.+++.|+ +++.++.|+.++. ++.+.|++.+| ++.+|.||+|||.++....|
T Consensus 181 ~P~~l~~~L~~~a~~~Gv--~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~~l~~ 242 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGV--EIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMASHFP 242 (460)
T ss_pred CHHHHHHHHHHHHHHcCC--EEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccccccCh
Confidence 345666677777777887 5888999999975 55678888777 58999999999997644333
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-07 Score=94.11 Aligned_cols=137 Identities=14% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC--CCCcccCCC--------CCC---------ccccceE----e-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD--LGGVWNSQA--------SCG---------RVYPSLH----L- 61 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~--~Gg~~~~~~--------~~~---------~~~~~~~----~- 61 (433)
..+||+|||+|++|++||..+++.|.+|+|+||.+. .||.-.... ... ..+..+. .
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 458999999999999999999999999999999874 454321110 000 0000000 0
Q ss_pred -----------ecC---CCcc----cCCCCC---C--CCCCCCC-CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe
Q psy2398 62 -----------ISP---KFNT----QVPDYP---M--PDNYPVY-PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY 117 (433)
Q Consensus 62 -----------~~~---~~~~----~~~~~~---~--~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~ 117 (433)
++. .++. .|.... . +.....+ .....+...+.+.+++.++ +++++++|+++..+
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv--~i~~~t~v~~l~~~ 160 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGV--EIRYDAPVTALELD 160 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCC--EEEcCCEEEEEEec
Confidence 000 0000 000000 0 0000000 0135677777778888887 68999999999876
Q ss_pred CCeEE-EEEc--cC--cEEEeCEEEEccCCCC
Q psy2398 118 EDIWE-VELS--NG--KKKKYDFIAVCNGAQR 144 (433)
Q Consensus 118 ~~~~~-v~~~--~g--~~~~~d~vIvAtG~~s 144 (433)
++.+. +... ++ ..+.++.||+|||.++
T Consensus 161 ~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 161 DGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred CCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 55432 3332 22 3578999999999864
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-07 Score=92.76 Aligned_cols=139 Identities=16% Similarity=0.161 Sum_probs=78.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC----CcccCCC---------------C-CCccccceEeec-
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG----GVWNSQA---------------S-CGRVYPSLHLIS- 63 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G----g~~~~~~---------------~-~~~~~~~~~~~~- 63 (433)
+..+||+|||||++|+++|..|++.|.+|+|+|+..... |.+...+ . ............
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~ 120 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKD 120 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEEC
Confidence 346899999999999999999999999999999875311 1111100 0 000111111111
Q ss_pred CCC-cccCCCCC--CCCCCC-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCe---EEEEEccCcE--EEe
Q psy2398 64 PKF-NTQVPDYP--MPDNYP-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI---WEVELSNGKK--KKY 133 (433)
Q Consensus 64 ~~~-~~~~~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~---~~v~~~~g~~--~~~ 133 (433)
... ...|+... .+.... ....+.++.+.+.+.+... ++ .+..+ +++.+..+++. .++...+|++ +.+
T Consensus 121 g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V--~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~A 197 (514)
T PLN02985 121 GKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNV--RLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALA 197 (514)
T ss_pred CEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCe--EEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence 111 11121100 000001 1345678888888888765 34 35444 56666554432 3333345543 568
Q ss_pred CEEEEccCCCCCC
Q psy2398 134 DFIAVCNGAQRVA 146 (433)
Q Consensus 134 d~vIvAtG~~s~p 146 (433)
|.||.|+|.+|.-
T Consensus 198 dLVVgADG~~S~v 210 (514)
T PLN02985 198 PLTVVCDGCYSNL 210 (514)
T ss_pred CEEEECCCCchHH
Confidence 9999999998753
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.2e-09 Score=71.97 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=35.2
Q ss_pred EECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 12 IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
|||||++||++|..|++.|.+|+|+|+.+.+||.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence 89999999999999999999999999999999988765
|
... |
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=91.33 Aligned_cols=97 Identities=18% Similarity=0.299 Sum_probs=79.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ... ..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~------------------------------------~~~-~~ 183 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA------------------------------------SLM-PP 183 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc------------------------------------hhC-CH
Confidence 46899999999999999999999999999998764310 000 13
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
.+...+.+..++.++ ++.++++|.+++.+++.+.+++.+++++.+|.||+|+|.
T Consensus 184 ~~~~~l~~~l~~~gV--~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 184 EVSSRLQHRLTEMGV--HLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHHHHHhCCC--EEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 455667777778887 588899999998877778888888888999999999998
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-08 Score=89.58 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=74.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEE-ccCCCCCCc-ccCCCC--------------CCcc-----ccce---EeecC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLY-EMESDLGGV-WNSQAS--------------CGRV-----YPSL---HLISP 64 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~-e~~~~~Gg~-~~~~~~--------------~~~~-----~~~~---~~~~~ 64 (433)
||+|||||.||+.||.++++.|.+|+++ .+.+.+|.. |+.... .+.+ .... .+|.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 444445432 111100 0000 0000 01111
Q ss_pred CCcccCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeC-CeEEEEEccCcEEEeCEEEEcc
Q psy2398 65 KFNTQVPDYPMPDNYP--VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 65 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g~~~~~d~vIvAt 140 (433)
+. |..+. ....+..+.+++++.++.. ++ .+ ++.+|+.+..++ .-+-|.+.+|..+.+|.||+||
T Consensus 81 kG---------pav~a~r~qvDr~~y~~~~~~~l~~~~nl--~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaT 148 (392)
T PF01134_consen 81 KG---------PAVHALRAQVDRDKYSRAMREKLESHPNL--TI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLAT 148 (392)
T ss_dssp S----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTE--EE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-T
T ss_pred CC---------CCccchHhhccHHHHHHHHHHHHhcCCCe--EE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEec
Confidence 10 11111 1356788999999988874 34 23 477899998864 4466788899999999999999
Q ss_pred CCC
Q psy2398 141 GAQ 143 (433)
Q Consensus 141 G~~ 143 (433)
|.+
T Consensus 149 Gtf 151 (392)
T PF01134_consen 149 GTF 151 (392)
T ss_dssp TTG
T ss_pred ccc
Confidence 973
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=92.94 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=80.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. + .+ ..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~----~~--~~ 213 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL--------------------------------P----GE--DK 213 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--------------------------------C----cC--CH
Confidence 4689999999999999999999999999999876541 0 01 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC---cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g---~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|++++.+++.+.+.+.++ .++.+|.||+|+|. .|+..
T Consensus 214 ~~~~~l~~~l~~~gV--~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~--~p~~~ 275 (462)
T PRK06416 214 EISKLAERALKKRGI--KIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR--RPNTE 275 (462)
T ss_pred HHHHHHHHHHHHcCC--EEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC--ccCCC
Confidence 566777777777787 6899999999988766777776655 56899999999998 66554
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.1e-09 Score=101.74 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=36.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEee----c------CCCcccCCCCCCC--
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLI----S------PKFNTQVPDYPMP-- 76 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~-- 76 (433)
||+|||||++|++||..+++.|.+|+|+|+.+.+||....... ..+...... . ...+......+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~--~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGV--SPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS---EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCc--CChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence 7999999999999999999999999999999999997765421 001111100 0 0001110000000
Q ss_pred C-CC-CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEcc---CcEEEeCEEEEccCC
Q psy2398 77 D-NY-PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSN---GKKKKYDFIAVCNGA 142 (433)
Q Consensus 77 ~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~---g~~~~~d~vIvAtG~ 142 (433)
. +. ........+...+.+.+.+.++ .+++++.|..+..++ .-+.|++.+ ..++.++.+|-|||-
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 79 YGWVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00 0123345556667777777777 599999999998874 334444443 346899999999995
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=90.99 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
+...++..+++... +++++++|+.|.++...+.+.+.+|..+.||.||++.=.
T Consensus 214 ~~~l~~al~~~l~~--~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 214 LQSLIEALAEKLEA--KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred HHHHHHHHHHHhhh--ceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCH
Confidence 34555556666555 489999999999987778888888888999999998764
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=91.45 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=77.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.+. + .+ ..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il--------------------------------~----~~--~~ 221 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL--------------------------------P----TE--DA 221 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC--------------------------------C----cC--CH
Confidence 4799999999999999999999999999999876431 0 01 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEE--eCCeEEEEEccC--cEEEeCEEEEccCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQ--YEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~--~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
++.+.+.+..++.++ .++++++|+.++. +++...+.+.+| .++.+|.||+|+|. .|+.+.
T Consensus 222 ~~~~~l~~~l~~~gI--~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~~ 285 (472)
T PRK05976 222 ELSKEVARLLKKLGV--RVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR--RPNTEG 285 (472)
T ss_pred HHHHHHHHHHHhcCC--EEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCC--ccCCCC
Confidence 566677777777788 5899999999986 333333444455 35899999999998 666543
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-07 Score=91.93 Aligned_cols=102 Identities=24% Similarity=0.202 Sum_probs=82.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~d 215 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------------------------F--LD 215 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------c--CC
Confidence 357899999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|+.++.+++.+.+++.++.++.+|.||+|+|. .|+..
T Consensus 216 ~~~~~~l~~~l~~~gI--~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 275 (461)
T PRK05249 216 DEISDALSYHLRDSGV--TIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR--TGNTD 275 (461)
T ss_pred HHHHHHHHHHHHHcCC--EEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC--Ccccc
Confidence 4566677777777787 588899999998776778888877878999999999998 55543
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=91.50 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=79.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeec---CCC---------cccCCCCC-
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLIS---PKF---------NTQVPDYP- 74 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~- 74 (433)
+||+|||||++|+.+|..+++.|.+|+++|+....+|.+.-++..+....+..... ... ...|....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 58999999999999999999999999999987544332211100000001100000 000 00011110
Q ss_pred --CCC-CCC-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 75 --MPD-NYP-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 75 --~~~-~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
-+. +.+ ....+..+...+++.+++. ++ ..+...|+.+..+ +..+.|.+.+|..+.++.||+|||.+.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV---~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNL---SLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCc---EEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 011 111 1335667778888878776 44 2345677777654 345667888888899999999999853
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=90.87 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=78.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~~~ 198 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP------------------------------------R--EEP 198 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC------------------------------------C--CCH
Confidence 46899999999999999999999999999999765410 0 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|++++.+++.+.++. ++.++.+|.||+|+|. .|+..
T Consensus 199 ~~~~~~~~~l~~~GI--~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~--~p~~~ 256 (438)
T PRK07251 199 SVAALAKQYMEEDGI--TFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR--KPNTE 256 (438)
T ss_pred HHHHHHHHHHHHcCC--EEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC--CCCcc
Confidence 556667777778888 5888999999987666665654 4567999999999998 66654
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=94.33 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...+||+|||||+.|+++|+.|+++|++|+|+|+.+.
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 4468999999999999999999999999999999653
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=89.96 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+||+|||||++|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999753
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-07 Score=90.10 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=78.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + . ..
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll--------------------------------~----~--~d 210 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL--------------------------------P----G--ED 210 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------c----c--cc
Confidence 34689999999999999999999999999999876441 0 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.++..+.+...++ .++.+|.||+|+|. .|+..
T Consensus 211 ~e~~~~l~~~L~~~GI--~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~--~p~~~ 271 (458)
T PRK06912 211 EDIAHILREKLENDGV--KIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGR--KPRVQ 271 (458)
T ss_pred HHHHHHHHHHHHHCCC--EEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCC--ccCCC
Confidence 4566777777777788 5899999999987655555544322 35899999999998 66654
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-07 Score=89.96 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=77.6
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC------------------------------CCcccc-
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS------------------------------CGRVYP- 57 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~------------------------------~~~~~~- 57 (433)
||+|||+|.+|++||..++++|.+|+|+||.+..||....... .....+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999987763322210 000000
Q ss_pred -------------------ceEeec-CC---CcccCCCCCCC----CCCC-----CCCCHHHHHHHHHHHHHHcCCCcce
Q psy2398 58 -------------------SLHLIS-PK---FNTQVPDYPMP----DNYP-----VYPNHSMMLDYLRSYAKKFDVYNHS 105 (433)
Q Consensus 58 -------------------~~~~~~-~~---~~~~~~~~~~~----~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~i 105 (433)
.+.+.. .. ....+...... .... .......+.+.+.+.+++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv--~i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGV--DI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTE--EE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCe--ee
Confidence 000000 00 00000000000 0000 112457788888888998886 69
Q ss_pred EeCcEEEEEEEeCCeEE-EEE---ccCc--EEEeCEEEEccCCCCC
Q psy2398 106 IFNTEVINLEQYEDIWE-VEL---SNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 106 ~~~~~V~~v~~~~~~~~-v~~---~~g~--~~~~d~vIvAtG~~s~ 145 (433)
+++++++++..+++..+ +.. .++. .+.++.||+|||.+..
T Consensus 159 ~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 99999999998865432 222 2344 4789999999999764
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-07 Score=89.67 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=79.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.+. ....
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~~ 186 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-------------------------------------NAPP 186 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh-------------------------------------hcCH
Confidence 468999999999999999999999999999987654110 0124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.+.+++.+..++.++ +++++++|++++. ++.+.+++.+|+++.+|.||+|+|. .|+
T Consensus 187 ~~~~~l~~~l~~~GV--~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~--~pn 242 (396)
T PRK09754 187 PVQRYLLQRHQQAGV--RILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI--SAN 242 (396)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC--Chh
Confidence 556777777778888 5889999999876 5567788888888999999999998 454
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-07 Score=89.17 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEEccCcEEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
...+.+.+.+.+++.|+ .++++++|+.++.+++.+ .++++++ ++.+|.||+|+|.++.
T Consensus 200 p~~~~~~l~~~~~~~G~--~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGV--KFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHHHCCC--EEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH
Confidence 44666667777777777 588899999998876665 4666554 6899999999999753
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.2e-08 Score=85.60 Aligned_cols=42 Identities=29% Similarity=0.441 Sum_probs=37.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
...+.+|+|||+|++||+||..|.++ .+|++||....+||.-
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha 46 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHA 46 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcc
Confidence 45678999999999999999999986 7999999999998843
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-07 Score=90.61 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=80.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~~--~~ 208 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------------------------------------GF--DP 208 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------------------------------------cc--CH
Confidence 47899999999999999999999999999998764310 01 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|.+++.+++ .+.+.+.+|.++.+|.||+|+|. .|+..
T Consensus 209 ~~~~~l~~~L~~~GV--~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~--~p~~~ 268 (450)
T PRK06116 209 DIRETLVEEMEKKGI--RLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR--EPNTD 268 (450)
T ss_pred HHHHHHHHHHHHCCc--EEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC--CcCCC
Confidence 566677777778888 5899999999987644 37788878888999999999998 66654
|
|
| >KOG0685|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=9e-08 Score=89.47 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=35.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~ 45 (433)
...+|+|||||.|||+||.+|.+.|. +++|+|..+.+||.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 44689999999999999999998766 89999999999883
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-07 Score=89.98 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=80.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l------------------------------------~~~--d~ 207 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL------------------------------------RGF--DD 207 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC------------------------------------ccc--CH
Confidence 4689999999999999999999999999999876430 011 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ +++++++|.+++.+++...+++.++.++.+|.||+|+|. .|+.
T Consensus 208 ~~~~~l~~~l~~~gV--~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~--~pn~ 265 (446)
T TIGR01424 208 DMRALLARNMEGRGI--RIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR--SPNT 265 (446)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC--CcCC
Confidence 556667777777788 588999999998766667787777778999999999998 5554
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-07 Score=91.93 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45799999999999999999999999999999875
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-07 Score=89.70 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~~--d~ 207 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP------------------------------------RE--EP 207 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC------------------------------------cc--CH
Confidence 47899999999999999999999999999998765410 01 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---CcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..+..++ +++++++|+.++.+++.+.+++.. +.++.+|.||+|+|. .|+..
T Consensus 208 ~~~~~l~~~l~~~gV--~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~--~p~~~ 269 (463)
T TIGR02053 208 EISAAVEEALAEEGI--EVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR--RPNTD 269 (463)
T ss_pred HHHHHHHHHHHHcCC--EEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC--CcCCC
Confidence 456677777777788 589999999998765666666532 357999999999998 66654
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=90.24 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=77.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .+ ..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~------------------------------------~~--d~ 207 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR------------------------------------HL--DD 207 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------cc--CH
Confidence 57999999999999999999999999999998765410 01 13
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
++.+.+.+..+ .++ +++++++|++++.+++...+++.++.++.+|.|++|+|. .|+.+.
T Consensus 208 ~~~~~l~~l~~-~~v--~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~--~pn~~~ 266 (451)
T PRK07846 208 DISERFTELAS-KRW--DVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR--VPNGDL 266 (451)
T ss_pred HHHHHHHHHHh-cCe--EEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC--ccCccc
Confidence 34455554433 355 588899999998766667777777888999999999998 666543
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-07 Score=86.22 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=38.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
..+..||+|||||.+||.+|..|.+.|++|+|+|.++++||.
T Consensus 4 p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 4 PPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 455689999999999999999999999999999999998874
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.2e-07 Score=87.78 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~d 223 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------------------------A--AD 223 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------------------------------------c--CC
Confidence 347999999999999999999999999999998764310 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc--C--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN--G--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~--g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++.+++|++++.+++...+.+.+ + ..+.+|.|++|+|. .|+.+
T Consensus 224 ~~~~~~~~~~l~~~gi--~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~--~p~~~ 287 (475)
T PRK06327 224 EQVAKEAAKAFTKQGL--DIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR--VPNTD 287 (475)
T ss_pred HHHHHHHHHHHHHcCc--EEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC--ccCCC
Confidence 4555666666677787 588899999998776666666544 3 46899999999998 66655
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-07 Score=87.53 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
...+...+...+.+.+.. .+..++.+..++.+...|.|.+.+|. +.+|.||+|+|.++.
T Consensus 155 p~~~~~~l~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVV-IIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 455566666666776642 45668888888763256888888886 999999999998653
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.3e-07 Score=88.84 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=81.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ ..
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~~--d~ 218 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP------------------------------------GE--DA 218 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC------------------------------------CC--CH
Confidence 46899999999999999999999999999998765410 11 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ ++..+++|.+++.+++.+.+.+.++.++.+|.|++|+|. .|+..
T Consensus 219 ~~~~~l~~~L~~~gV--~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~--~pn~~ 277 (466)
T PRK07845 219 DAAEVLEEVFARRGM--TVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS--VPNTA 277 (466)
T ss_pred HHHHHHHHHHHHCCc--EEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC--CcCCC
Confidence 456677777778888 588899999998766677788778888999999999998 66654
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.3e-07 Score=89.38 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=81.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+- +. ...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l------------------------------------~~--~d~ 244 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL------------------------------------RG--FDD 244 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC------------------------------------cc--cCH
Confidence 4689999999999999999999999999999876430 01 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|.+++.+++...+.+.++.++.+|.|++|+|. .|+..
T Consensus 245 ~~~~~l~~~l~~~GI--~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~pn~~ 303 (499)
T PLN02507 245 EMRAVVARNLEGRGI--NLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR--APNTK 303 (499)
T ss_pred HHHHHHHHHHHhCCC--EEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC--CCCCC
Confidence 566777777777788 589999999998766677788877878999999999998 56554
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.9e-07 Score=88.65 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=78.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------~--~~~ 212 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP------------------------------------R--EDE 212 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc------------------------------------c--cCH
Confidence 47899999999999999999999999999998765410 0 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---cCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+....++.++ +++++++|.+++.+++...+.+. ++.++.+|.||+|+|. .|+..
T Consensus 213 ~~~~~l~~~l~~~GV--~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~--~pn~~ 274 (463)
T PRK06370 213 DVAAAVREILEREGI--DVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR--VPNTD 274 (463)
T ss_pred HHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC--CcCCC
Confidence 556677777778888 58999999999876555555442 2446899999999998 66654
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-07 Score=88.64 Aligned_cols=38 Identities=29% Similarity=0.615 Sum_probs=36.0
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
+|+|||||++||+||..|++.|++|+|+|+++.+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 68999999999999999999999999999999999854
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.2e-07 Score=88.50 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=79.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+. + .+ ..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~----~~--d~ 213 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL--------------------------------P----NE--DA 213 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------C----cc--CH
Confidence 4689999999999999999999999999999876441 0 11 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|++++.+++.+.+.+. ++ .++.+|.||+|+|. .|+..
T Consensus 214 ~~~~~l~~~l~~~gV--~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~--~pn~~ 276 (466)
T PRK07818 214 EVSKEIAKQYKKLGV--KILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF--APRVE 276 (466)
T ss_pred HHHHHHHHHHHHCCC--EEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc--ccCCC
Confidence 556777777778888 59999999999876666666554 45 36899999999998 66654
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.9e-07 Score=88.06 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=79.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .+ ..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------~~--d~ 207 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------------------------------------SF--DS 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------------------------------------cc--CH
Confidence 47899999999999999999999999999998765410 11 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEccC-cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNG-KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..+..++ +++.+++|++++.++ +...+++.++ ..+.+|.||+|+|. .|+..
T Consensus 208 ~~~~~~~~~l~~~gI--~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~--~pn~~ 268 (450)
T TIGR01421 208 MISETITEEYEKEGI--NVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR--KPNTK 268 (450)
T ss_pred HHHHHHHHHHHHcCC--EEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC--CcCcc
Confidence 456667777777788 588999999998753 3366777676 56899999999998 66654
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.3e-07 Score=89.30 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEc---cC--cEEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELS---NG--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~---~g--~~~~~d~vIvAtG~~s~ 145 (433)
...+.+.+.+.++..|+ .++++++|+.++.+ ++.|.+++. ++ .++.+|+||+|+|.++.
T Consensus 177 p~~l~~aL~~~a~~~Gv--~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGT--TIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 46667777777777777 69999999999885 456887643 23 25899999999999764
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.6e-07 Score=89.60 Aligned_cols=138 Identities=9% Similarity=0.036 Sum_probs=80.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC--------CCC---------------CCccccc----
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS--------QAS---------------CGRVYPS---- 58 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~--------~~~---------------~~~~~~~---- 58 (433)
..+||+|||+|.+||+||..+++.|.+|+|+||....+|.-.. ..+ ...+-+.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 3589999999999999999999999999999998865432111 100 0000000
Q ss_pred eEeecC---CCc----ccCCCCC--------CC-CCCCC------CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE
Q psy2398 59 LHLISP---KFN----TQVPDYP--------MP-DNYPV------YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ 116 (433)
Q Consensus 59 ~~~~~~---~~~----~~~~~~~--------~~-~~~~~------~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~ 116 (433)
+.-.++ .++ ..|.... .. ..... -.....+.+.|.+.+++.++ .+..++.|+.+..
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV--~i~~~~~v~~Li~ 172 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPL--DIREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCC--EEEECeEeeeeEE
Confidence 000000 000 0011000 00 00000 11356778888888888886 5888999999976
Q ss_pred eCC----eEEEE-----EccC-cEEEeCEEEEccCCCCC
Q psy2398 117 YED----IWEVE-----LSNG-KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 117 ~~~----~~~v~-----~~~g-~~~~~d~vIvAtG~~s~ 145 (433)
+++ +..+. ..++ ..+.++.||+|||.++.
T Consensus 173 ~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 532 23333 1222 35789999999999763
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.3e-07 Score=89.70 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=37.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
.+..+||+|||+|++|++||..++++|.+|+|+||....||.
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 345689999999999999999999999999999999887764
|
|
| >KOG2415|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=4e-07 Score=83.40 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc------CCCeEEEccCCCCCCcccCCCC----------------CCcc-----ccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG------NINYDLYEMESDLGGVWNSQAS----------------CGRV-----YPS 58 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~------g~~v~v~e~~~~~Gg~~~~~~~----------------~~~~-----~~~ 58 (433)
+.+||+||||||+||+||++|.++ .++|+|+||...+||......- .... -..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 458999999999999999999875 5699999999999985443321 0000 111
Q ss_pred eEeecCCCcccCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEc---------
Q psy2398 59 LHLISPKFNTQVPD-YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELS--------- 126 (433)
Q Consensus 59 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~--------- 126 (433)
+...+.+.....+. .++.+.....++-.++.+++-+.|+.+|+. |.-+-.+..|-.+ +.-.-|.+.
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~edgsVkGiaT~D~GI~k~G~ 232 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDEDGSVKGIATNDVGISKDGA 232 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcCCCcEeeEeeccccccCCCC
Confidence 12222222222221 122233334456789999999999999884 4433333333332 111222222
Q ss_pred ------cCcEEEeCEEEEccCCCC
Q psy2398 127 ------NGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 127 ------~g~~~~~d~vIvAtG~~s 144 (433)
.|-.+.++.-|.|-|++.
T Consensus 233 pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 233 PKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred ccccccccceecceeEEEeccccc
Confidence 233477888888888753
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.6e-07 Score=86.98 Aligned_cols=58 Identities=17% Similarity=0.378 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEe-CCeEEEEEcc---Cc--EEEeCEEEEccCCCCC
Q psy2398 86 SMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQY-EDIWEVELSN---GK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~-~~~~~v~~~~---g~--~~~~d~vIvAtG~~s~ 145 (433)
..+.+.+.+.+++.+ + +++++++|+.++.+ ++.|.+++.+ +. ++.+++||+|+|.++.
T Consensus 183 ~~l~~aL~~~a~~~Ggv--~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQGNF--ELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCCCe--EEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 456666666677665 5 58999999999885 4458887543 43 5899999999999864
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.7e-07 Score=85.72 Aligned_cols=57 Identities=19% Similarity=0.069 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCe-EEEEEccCcEEEeCEEEEccCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI-WEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~-~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
...+...+...+.+.|+ ++..+++|+.++.. ++. +.|.+.++ ++.++.||+|+|.++
T Consensus 182 p~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 182 HDAVAWGYARGADRRGV--DIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 34455556667777787 58889999999764 344 45777776 699999999999865
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=98.67 Aligned_cols=120 Identities=14% Similarity=0.187 Sum_probs=75.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCC---CCcccCCCC-------CC-----------ccccceEeecC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDL---GGVWNSQAS-------CG-----------RVYPSLHLISP 64 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~---Gg~~~~~~~-------~~-----------~~~~~~~~~~~ 64 (433)
++|+||||||+||++|..|++. |++|+|+|+.+.. |........ .. ..+....+...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 3799999999999999999998 8999999998753 321111100 00 00111111100
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.... .. ....+ .-..+.++.+.|.+.+.+.++ .++++++|+.++. ....+|.||.|+|.+|
T Consensus 81 g~~~--~~--~g~~~-~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S 141 (765)
T PRK08255 81 GRRI--RS--GGHGF-AGIGRKRLLNILQARCEELGV--KLVFETEVPDDQA------------LAADADLVIASDGLNS 141 (765)
T ss_pred CEEE--EE--CCeeE-ecCCHHHHHHHHHHHHHHcCC--EEEeCCccCchhh------------hhcCCCEEEEcCCCCH
Confidence 0000 00 00001 125689999999999999887 5899988876532 1257999999999987
Q ss_pred CC
Q psy2398 145 VA 146 (433)
Q Consensus 145 ~p 146 (433)
..
T Consensus 142 ~v 143 (765)
T PRK08255 142 RI 143 (765)
T ss_pred HH
Confidence 44
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=88.01 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=41.1
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
|.|....+||+|||+|++|+++|..++++|.+|+||||.+..||..
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 6666778999999999999999999999999999999988777643
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=87.00 Aligned_cols=136 Identities=12% Similarity=0.042 Sum_probs=78.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC--------CCCCc---------------cccce----
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ--------ASCGR---------------VYPSL---- 59 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~--------~~~~~---------------~~~~~---- 59 (433)
.+||+|||+|.+||+||..+++.|. |+|+||.+..||.-... .+..+ +-+.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3799999999999999999999997 99999986554422111 00000 00000
Q ss_pred EeecC---CCc----ccCCCCC--------CC-CCCC-----CCCCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEe
Q psy2398 60 HLISP---KFN----TQVPDYP--------MP-DNYP-----VYPNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQY 117 (433)
Q Consensus 60 ~~~~~---~~~----~~~~~~~--------~~-~~~~-----~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~ 117 (433)
...++ .++ ..|.... .. ...+ .-.....+.+.+.+.+++ .++ .+++++.|+.+..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi--~i~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNI--RIIEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCc--EEEECeEeeeeecc
Confidence 00000 000 0011000 00 0000 011345677778777776 466 58899999999765
Q ss_pred CCeEE-EEEcc-C--cEEEeCEEEEccCCCCC
Q psy2398 118 EDIWE-VELSN-G--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 118 ~~~~~-v~~~~-g--~~~~~d~vIvAtG~~s~ 145 (433)
++... +...+ + ..+.++.||+|||.++.
T Consensus 159 ~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 54433 33322 2 35789999999999764
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=86.62 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=77.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+.. .+ .
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------------------------~~--d 214 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------------------------GT--D 214 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------------------------CC--C
Confidence 457999999999999999999999999999998765410 11 1
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---c--CcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---N--GKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~--g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.++ +++++++|++++.+++.+.+.+. + +..+.+|.|++|+|. .|+.
T Consensus 215 ~~~~~~l~~~l~~~gV--~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~--~pn~ 278 (466)
T PRK06115 215 TETAKTLQKALTKQGM--KFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR--RPYT 278 (466)
T ss_pred HHHHHHHHHHHHhcCC--EEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC--cccc
Confidence 3455667777777788 58999999999876556655543 2 346899999999998 5554
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=86.46 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=76.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ..
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~------------------------------------~~--d~ 210 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR------------------------------------HL--DE 210 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc------------------------------------cc--CH
Confidence 47899999999999999999999999999998764310 00 13
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..+ .++ .++++++|++++.+++.+.+++.+++++.+|.|++|+|. .|+..
T Consensus 211 ~~~~~l~~~~~-~gI--~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~--~pn~~ 268 (452)
T TIGR03452 211 DISDRFTEIAK-KKW--DIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR--VPNGD 268 (452)
T ss_pred HHHHHHHHHHh-cCC--EEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc--CcCCC
Confidence 34444544433 355 588899999998766667777777778999999999998 66553
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-07 Score=93.59 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~ 42 (433)
.+||+|||||.+||+||..+++. |.+|+|+||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 47999999999999999999998 9999999998753
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=88.67 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=32.5
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
||+|||+|.+|++||..+++.|.+|+|+||....+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999987544
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-07 Score=93.28 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=78.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCC-CCcccCCC--CCC----------------------ccccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDL-GGVWNSQA--SCG----------------------RVYPS 58 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~-Gg~~~~~~--~~~----------------------~~~~~ 58 (433)
..+||+|||||.+|++||..+++. |.+|+|+||.+.. +|...... ... ...+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 457999999999999999999987 6899999998753 22211100 000 00000
Q ss_pred e----EeecC---CCc----ccCCCCCCC-------CCCC----CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE
Q psy2398 59 L----HLISP---KFN----TQVPDYPMP-------DNYP----VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ 116 (433)
Q Consensus 59 ~----~~~~~---~~~----~~~~~~~~~-------~~~~----~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~ 116 (433)
+ ...++ .++ ..|...... .... .......+.+.+...+++.++ ++.+++.|+.+..
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~~~v~~Li~ 165 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARV--LITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCC--EEEcceEEEEEEE
Confidence 0 00000 000 000000000 0000 011345677888888887777 5899999999976
Q ss_pred e-CCeEE-E---EEccCc--EEEeCEEEEccCCCCC
Q psy2398 117 Y-EDIWE-V---ELSNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 117 ~-~~~~~-v---~~~~g~--~~~~d~vIvAtG~~s~ 145 (433)
+ ++... + ...++. .+.++.||+|||.++.
T Consensus 166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 5 44322 1 223453 4789999999999653
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=88.60 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=34.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
...+||+|||||.+||+||..+++.|.+|+|+||....+
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 345799999999999999999999999999999976543
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.2e-07 Score=86.93 Aligned_cols=41 Identities=24% Similarity=0.452 Sum_probs=37.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
...+||+|||||+.|+.+|+.++.+|++|+++|+++...|+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT 50 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT 50 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc
Confidence 46789999999999999999999999999999999875554
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-06 Score=85.50 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=79.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ .
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------~~~--~ 198 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL------------------------------------PRE--D 198 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC------------------------------------CCc--C
Confidence 34689999999999999999999999999999875431 011 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.++ +++++++|.+++.+++.+.+.+.++ ++.+|.|++|+|. .|+.
T Consensus 199 ~~~~~~l~~~l~~~gV--~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~--~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQGV--DIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR--QPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC--CcCC
Confidence 4556777777888888 5888999999987666677766555 5899999999998 5554
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-06 Score=85.74 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||+|.+||+||..+. .|.+|+|+||.+..||
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 4589999999999999999985 6999999999887654
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.8e-07 Score=90.64 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=36.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
..+||+|||+|.+|++||.++++.|.+|+|+||....||.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 3589999999999999999999999999999998876663
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=92.51 Aligned_cols=136 Identities=16% Similarity=0.028 Sum_probs=78.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC-CCCcccCCC--------CCCcc---ccc--------------
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD-LGGVWNSQA--------SCGRV---YPS-------------- 58 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~-~Gg~~~~~~--------~~~~~---~~~-------------- 58 (433)
...+||+|||+|.+|++||..+ +.|.+|+|+||... .||.-.... +..+. +..
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 3457999999999999999999 88999999999764 344221110 00000 000
Q ss_pred --eEeecC---CCcccCCCCCCC-----------CCCCCC--------CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEE
Q psy2398 59 --LHLISP---KFNTQVPDYPMP-----------DNYPVY--------PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINL 114 (433)
Q Consensus 59 --~~~~~~---~~~~~~~~~~~~-----------~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v 114 (433)
+...++ .++..+ ..++. .....+ .....+...+.+.+.+.++ .+.+++.++.+
T Consensus 84 ~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~t~v~~L 160 (543)
T PRK06263 84 EILVKEAPKRLKDLEKF-GALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERI--KILEEVMAIKL 160 (543)
T ss_pred HHHHHHHHHHHHHHHHc-CCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCC--EEEeCeEeeee
Confidence 000000 000000 00000 000001 1245677777777777777 68999999998
Q ss_pred EEeCCe-EE-EE--E-ccCc--EEEeCEEEEccCCCC
Q psy2398 115 EQYEDI-WE-VE--L-SNGK--KKKYDFIAVCNGAQR 144 (433)
Q Consensus 115 ~~~~~~-~~-v~--~-~~g~--~~~~d~vIvAtG~~s 144 (433)
..++++ .. +. . .++. .+.++.||+|||.++
T Consensus 161 i~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 161 IVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred EEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 776443 21 22 1 3453 478999999999965
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=88.63 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE----EEEccCc--EEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE----VELSNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~----v~~~~g~--~~~~d~vIvAtG~~s~ 145 (433)
...+...+.+.+.+.++ ++..++.|+.+..+++... +...++. .+.++.||+|||.++.
T Consensus 134 G~~i~~~L~~~~~~~gi--~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 134 GHAILHELVNNLRRYGV--TIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred hHHHHHHHHHHHhhCCC--EEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 45677777777777777 5888999999876544321 2333443 4789999999999753
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=83.42 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCCCCCccc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESDLGGVWN 47 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~~Gg~~~ 47 (433)
+++++|||||++||+||.+|.+. |.+|+|+|+.+.+||...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 57999999999999999999985 679999999999999765
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-06 Score=87.90 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=35.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcC---CCeEEEccCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGN---INYDLYEMESDLGG 44 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g---~~v~v~e~~~~~Gg 44 (433)
...+||+|||||.+||+||..+++.| .+|+|+||....|+
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 45689999999999999999999998 89999999876554
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.8e-07 Score=90.93 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
.+||+|||||.+|++||..+++.|.+|+|+||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 4799999999999999999999999999999987543
|
|
| >KOG0029|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-07 Score=93.03 Aligned_cols=43 Identities=26% Similarity=0.422 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
.++++|+|||||+|||+||+.|.+.|++|+|+|.++.+||...
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 3567999999999999999999999999999999999998544
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-06 Score=85.29 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=34.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||+|.+|++||..+++.|.+|+|+||....+|
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 457999999999999999999999999999999865443
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-05 Score=76.06 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
||+|||+|.+||++|+.|.+. .+|+|+-|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 999999999999999999997 99999999764
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-06 Score=85.26 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=78.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
.+.+++|||||+.|+.+|..+... |.+|+++++.+.+.. .+
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~------------------------------------~~ 229 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR------------------------------------GF 229 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc------------------------------------cc
Confidence 357899999999999999876654 899999998765410 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
..++.+.+.+..++.++ ++++++.|++++.+ ++...+.+.++.++.+|.|++|+|. .|+..
T Consensus 230 --d~~~~~~l~~~L~~~GI--~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~Pn~~ 291 (486)
T TIGR01423 230 --DSTLRKELTKQLRANGI--NIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR--VPRTQ 291 (486)
T ss_pred --CHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC--CcCcc
Confidence 25566777777788888 58999999999875 3335667767778999999999998 55543
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=84.99 Aligned_cols=101 Identities=22% Similarity=0.297 Sum_probs=75.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||+.|+.+|..|.+.|.+|+++|+.+.+.. .+ .
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~------------------------------------~~--d 214 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP------------------------------------AA--D 214 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC------------------------------------cC--C
Confidence 347899999999999999999999999999998765410 11 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc--C--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN--G--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~--g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++. + .+.+++.|+.++.+++...+++.+ + .++.+|.||+|+|. .|+..
T Consensus 215 ~~~~~~~~~~l~~~-v--~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~--~pn~~ 277 (471)
T PRK06467 215 KDIVKVFTKRIKKQ-F--NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR--VPNGK 277 (471)
T ss_pred HHHHHHHHHHHhhc-e--EEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc--cccCC
Confidence 34555555555544 5 588899999998766666666543 2 35899999999998 66654
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-06 Score=84.73 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=78.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++...+ .....
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l---------------------------------------~~~d~ 228 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL---------------------------------------FREDP 228 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC---------------------------------------CcchH
Confidence 468999999999999999999999999999874211 00124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|+.++.+++.+.+.+.++ ++.+|.||+|+|. .|+..
T Consensus 229 ~~~~~l~~~L~~~GV--~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~--~pn~~ 286 (479)
T PRK14727 229 LLGETLTACFEKEGI--EVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGR--HANTH 286 (479)
T ss_pred HHHHHHHHHHHhCCC--EEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCC--CCCcc
Confidence 566777777888888 5888999999987767777777665 5899999999998 55543
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=89.15 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=35.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
...+||+|||||+.|+++|+.|+++|++|+|+|+.+..+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 3458999999999999999999999999999999864333
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=85.11 Aligned_cols=99 Identities=22% Similarity=0.304 Sum_probs=76.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|++.|.+|+++++.+.+.. +.+ ..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-----------------------------------~~~--~~ 179 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-----------------------------------KLF--DE 179 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-----------------------------------ccc--CH
Confidence 46899999999999999999999999999998764300 001 14
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+++.+..++.++ ++.++++|.+++.++. . +.+.+++++.+|.||+|+|. .|+.
T Consensus 180 ~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~--~p~~ 235 (427)
T TIGR03385 180 EMNQIVEEELKKHEI--NLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGI--KPNS 235 (427)
T ss_pred HHHHHHHHHHHHcCC--EEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCc--cCCH
Confidence 556777777888888 5888999999986433 3 45567778999999999998 5543
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-06 Score=86.13 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
.+||+|||||.+||+||..+++.|.+|+|+||...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4799999999999999999999999999999866543
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-06 Score=84.35 Aligned_cols=99 Identities=10% Similarity=0.159 Sum_probs=77.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||+|+.|+.+|..|++.|.+|+++++...+ + . ...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l---------------------------------~----~--~~~ 218 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL---------------------------------S----Q--EDP 218 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC---------------------------------C----C--CCH
Confidence 468999999999999999999999999999864211 0 0 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|..++.+++.+.+.+.++ ++.+|.||+|+|. .|+..
T Consensus 219 ~~~~~l~~~l~~~GI--~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~--~pn~~ 276 (468)
T PRK14694 219 AVGEAIEAAFRREGI--EVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGR--TPNTE 276 (468)
T ss_pred HHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCC--CCCcC
Confidence 556677777777888 5888999999987666666766554 6999999999998 55543
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-06 Score=85.89 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=34.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg 44 (433)
..+||+|||||.+||+||..+++. |.+|+|+||....||
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 357999999999999999999987 479999999876554
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=84.82 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . -..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~------------------------------------~--~d~ 189 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK------------------------------------L--MDA 189 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch------------------------------------h--cCH
Confidence 46899999999999999999999999999998765410 0 024
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ +++++++|.+++. . .+++.+++++.+|.|++|+|. .|+.
T Consensus 190 ~~~~~l~~~l~~~gI--~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~--~pn~ 243 (438)
T PRK13512 190 DMNQPILDELDKREI--PYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT--HPNS 243 (438)
T ss_pred HHHHHHHHHHHhcCC--EEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC--CcCh
Confidence 566677777777888 5888999999863 2 466667778999999999998 5554
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-06 Score=84.11 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=77.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+++|||||+.|+.+|..|++.|.+|+++++. .+. +.+ ..
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l------------------------------------~~~--d~ 220 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL------------------------------------RGF--DQ 220 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc------------------------------------ccc--CH
Confidence 468999999999999999999999999999863 220 011 25
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC---cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g---~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+++.+..++.++ ++++++.+..++..++...+++.++ .++.+|.|++|+|. .|+..
T Consensus 221 ~~~~~l~~~L~~~gV--~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~--~pn~~ 282 (484)
T TIGR01438 221 DCANKVGEHMEEHGV--KFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR--DACTR 282 (484)
T ss_pred HHHHHHHHHHHHcCC--EEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC--CcCCC
Confidence 566777777788888 5889999988887655566666554 36899999999998 55543
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=88.45 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=35.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||+|.+|++||..+++.|.+|+|+||....+|
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 357999999999999999999999999999999876554
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=84.04 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=77.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||++|+.+|..|.+.|.+|+++++.+.+.. . .+ ..
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--------------------------------~---~~--~~ 191 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP--------------------------------D---SF--DK 191 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc--------------------------------h---hc--CH
Confidence 46899999999999999999999999999998654300 0 01 25
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+++.+.+++.++ +++++++|++++.+++.+.+.++++ ++.+|.||+|+|. .|+.
T Consensus 192 ~~~~~l~~~l~~~gI--~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~--~p~~ 248 (444)
T PRK09564 192 EITDVMEEELRENGV--ELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGV--KPNT 248 (444)
T ss_pred HHHHHHHHHHHHCCC--EEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCC--CcCH
Confidence 677788888888888 5889999999976544445555544 6999999999998 5543
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-06 Score=81.38 Aligned_cols=100 Identities=24% Similarity=0.410 Sum_probs=77.6
Q ss_pred CcEEEECCChHHHHHHHHHHhc-------------CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG-------------NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYP 74 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~-------------g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (433)
-+|+|+|||++|+..|-+|++. .++|+++|+.+.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 4799999999999999999864 13899999987651
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEccCCCCCCCCCCC
Q psy2398 75 MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAtG~~s~p~~p~i 151 (433)
+. -..++.+|.++..++.|+ .+++++.|++|+. + .|++.+++ .+.++.+|-|+|....|-.-.+
T Consensus 205 -----p~--~~~~l~~~a~~~L~~~GV--~v~l~~~Vt~v~~--~--~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 205 -----PM--FPPKLSKYAERALEKLGV--EVLLGTPVTEVTP--D--GVTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred -----cC--CCHHHHHHHHHHHHHCCC--EEEcCCceEEECC--C--cEEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 11 136677899999999999 5999999999986 3 35566666 4999999999999544444343
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=83.84 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=78.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+++|||+|+.|+.+|..|++.|.+|+++++. .+. . .+ ..
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l----~--------------------------------~~--d~ 222 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL----R--------------------------------GF--DR 222 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc----c--------------------------------cC--CH
Confidence 468999999999999999999999999999863 220 0 11 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++.++.+..++..++...+.+.+++++.+|.|++|+|. .|+..
T Consensus 223 ~~~~~l~~~l~~~GV--~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~pn~~ 281 (499)
T PTZ00052 223 QCSEKVVEYMKEQGT--LFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR--KPDIK 281 (499)
T ss_pred HHHHHHHHHHHHcCC--EEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC--CCCcc
Confidence 456777777778888 588899998888765556677777878999999999998 66654
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-06 Score=86.11 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
|+.....+||+|||+|.+||+||..+++.|.+|+|+||....+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~ 43 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTR 43 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 5555556899999999999999999999999999999986544
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-06 Score=85.79 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=38.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
+..+||+|||+|.+|+++|..+.+.|.+|+||||.+..||...
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 3468999999999999999999999999999999887777543
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-06 Score=85.57 Aligned_cols=99 Identities=9% Similarity=0.154 Sum_probs=78.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++...+ . . ...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----~---------------------------------~--~d~ 310 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----F---------------------------------R--EDP 310 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----c---------------------------------c--cCH
Confidence 478999999999999999999999999999974311 0 0 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|..++.+++.+.+.+.++ ++.+|.||+|+|. .|+..
T Consensus 311 ~~~~~l~~~l~~~gI--~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~--~pn~~ 368 (561)
T PRK13748 311 AIGEAVTAAFRAEGI--EVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR--APNTR 368 (561)
T ss_pred HHHHHHHHHHHHCCC--EEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC--CcCCC
Confidence 566777777788888 5888999999987666777776655 5999999999998 66654
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.6e-06 Score=85.56 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=34.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 347999999999999999999999999999999875443
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.8e-07 Score=89.25 Aligned_cols=44 Identities=25% Similarity=0.446 Sum_probs=40.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
+++||+|||||++||+||..|.++|++|+|+|+++.+||.+...
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~ 46 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTV 46 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeee
Confidence 56799999999999999999999999999999999999976543
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.1e-06 Score=83.74 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGG 44 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg 44 (433)
.+||+|||||.+||.||..+++. |.+|+|+||....|+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999987 589999999876554
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-06 Score=83.80 Aligned_cols=101 Identities=17% Similarity=0.285 Sum_probs=77.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il------------------------------------~~~--d~ 278 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL------------------------------------RKF--DE 278 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc------------------------------------ccC--CH
Confidence 5789999999999999999999999999999876441 011 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEcc-CcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSN-GKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~-g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ ++++++.|.+++.++ +...+...+ +.++.+|.|++|+|. .|+..
T Consensus 279 ~i~~~l~~~L~~~GV--~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr--~Pn~~ 339 (561)
T PTZ00058 279 TIINELENDMKKNNI--NIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR--SPNTE 339 (561)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCC--CCCcc
Confidence 556777777777788 588999999998753 345555444 346999999999997 55543
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.6e-06 Score=83.78 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
...+||+|||+|.+||+||..+++.|.+|+|+||....+
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~ 48 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR 48 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 345799999999999999999999999999999975433
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-07 Score=87.25 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe--EEEEEccCcEEEeCEEEEccCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~--~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
..+..+.++|.+.+.+.|+. +..+ +|+.+..+.++ ..|++.+|.++++|.||-|||..
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred EeHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 35899999999999999984 4444 68888877444 36778889899999999999974
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4e-06 Score=83.40 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=33.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
.+||+|||+|.+|++||..+++ |.+|+|+||.+..||
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4799999999999999999977 899999999876554
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-06 Score=88.63 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=79.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+- . .. -..
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll---~---------------------------------~~-ld~ 182 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM---A---------------------------------KQ-LDQ 182 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh---h---------------------------------hh-cCH
Confidence 4689999999999999999999999999999865430 0 00 023
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
...+.+.+..+..++ ++++++.++++..++....|++.+|+++.+|.||+|+|. .|+.
T Consensus 183 ~~~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~--~Pn~ 240 (785)
T TIGR02374 183 TAGRLLQRELEQKGL--TFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI--RPND 240 (785)
T ss_pred HHHHHHHHHHHHcCC--EEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC--CcCc
Confidence 455667777778888 589999999887655556678888889999999999998 5554
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.4e-06 Score=83.40 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=39.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+..+||+|||+|.+|+++|..+++.|.+|+|+||...+||....
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 35689999999999999999999999999999999888876443
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.7e-06 Score=81.65 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=75.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~d 209 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP------------------------------------L--ED 209 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------------------------------------c--hh
Confidence 357899999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEcc--CcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSN--GKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~--g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++. + +++++++|.+++.+++ ..+++..+ +.++.+|.|++|+|. .|+..
T Consensus 210 ~~~~~~~~~~l~~~-I--~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~--~p~~~ 271 (460)
T PRK06292 210 PEVSKQAQKILSKE-F--KIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR--RPNTD 271 (460)
T ss_pred HHHHHHHHHHHhhc-c--EEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC--ccCCC
Confidence 45566666666665 6 5888999999987543 34443323 346899999999998 66665
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.1e-06 Score=88.45 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=37.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
...||+|||+|.+|++||..+++.|.+|+|+||.+..||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4589999999999999999999999999999999888774
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.9e-06 Score=83.63 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||||.+|++||..+++. .+|+|+||....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 458999999999999999999986 89999999765443
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.4e-07 Score=89.68 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=39.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
++||+|||||++||+||..|+++|++|+|+||+..+||.....
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~ 45 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF 45 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEE
Confidence 5899999999999999999999999999999999999966554
|
|
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-06 Score=76.70 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=83.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++++|||||..||..+.-..++|.+|+++|-.+++|+.+
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m-------------------------------------- 250 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM-------------------------------------- 250 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc--------------------------------------
Confidence 346799999999999999999999999999999998887642
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEcc-----CcEEEeCEEEEccCCCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN-----GKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~-----g~~~~~d~vIvAtG~~s~p~~ 148 (433)
..++...++...++.++ .+.++++|..++++ ++...|++.+ .+++++|.+++|+|. .|..
T Consensus 251 D~Eisk~~qr~L~kQgi--kF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR--rP~t 316 (506)
T KOG1335|consen 251 DGEISKAFQRVLQKQGI--KFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR--RPFT 316 (506)
T ss_pred CHHHHHHHHHHHHhcCc--eeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC--cccc
Confidence 14566777777888888 58899999999988 4477777665 246899999999997 4443
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=79.80 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=38.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..+||+|||+| +|++||..+++.|.+|+|+||.+.+||+....
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence 46899999999 89999999999999999999998888866544
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=88.68 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=35.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
...+||+|||||.+||+||..+++.|.+|+|+||.+..+
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 456899999999999999999999999999999976543
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.3e-06 Score=86.87 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=79.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+-. .. -..
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~------------------------------------~~-ld~ 187 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA------------------------------------EQ-LDQ 187 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh------------------------------------hh-cCH
Confidence 46899999999999999999999999999998764300 00 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
+..+.+.+..++.++ ++++++.+++|..+ +....+++.+|+.+.+|.||+|+|. .|+.
T Consensus 188 ~~~~~l~~~L~~~GV--~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~--rPn~ 247 (847)
T PRK14989 188 MGGEQLRRKIESMGV--RVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI--RPQD 247 (847)
T ss_pred HHHHHHHHHHHHCCC--EEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc--ccCc
Confidence 556777788888888 59999999999764 2345677888889999999999998 5554
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-06 Score=77.78 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=33.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG 43 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G 43 (433)
+.+||++||||+.|.+.+..|++. .++|.|+||.+.++
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 468999999999999999999987 57999999988754
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.2e-06 Score=81.57 Aligned_cols=102 Identities=9% Similarity=0.140 Sum_probs=77.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~------------------------------------~--~d 292 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR------------------------------------G--FD 292 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc------------------------------------c--cC
Confidence 357999999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+++.+..++.++ +++.++++..+..+ ++...+.+.++....+|.||+|+|. .|+..
T Consensus 293 ~~~~~~l~~~L~~~GV--~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~--~Pnt~ 353 (558)
T PLN02546 293 EEVRDFVAEQMSLRGI--EFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGR--KPNTK 353 (558)
T ss_pred HHHHHHHHHHHHHCCc--EEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecc--ccCCC
Confidence 4556677777777888 58889999999764 4445565555544458999999998 55543
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=81.53 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=33.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
.+|+|||||.+|+.+|..|++.|++|+|||+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 489999999999999999999999999999877654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.3e-06 Score=82.40 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=75.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||||+.|+..|..|.+.|.+|+++|+.+.+.. . -..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~------------------------------------~--~d~ 353 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP------------------------------------L--LDA 353 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc------------------------------------c--CCH
Confidence 46899999999999999999999999999999875410 0 124
Q ss_pred HHHHHHHHHH-HHcCCCcceEeCcEEEEEEEeCCe--EEEEEcc-------C--------cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYA-KKFDVYNHSIFNTEVINLEQYEDI--WEVELSN-------G--------KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~-~~~~~~~~i~~~~~V~~v~~~~~~--~~v~~~~-------g--------~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+++.... +..++ .++.++.|..++.+++. ..+.+.+ + .++.+|.|++|+|. .|+.
T Consensus 354 eis~~l~~~ll~~~GV--~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr--~Pnt 429 (659)
T PTZ00153 354 DVAKYFERVFLKSKPV--RVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR--KPNT 429 (659)
T ss_pred HHHHHHHHHHhhcCCc--EEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc--ccCC
Confidence 4556666543 45677 58999999999875432 4554321 1 26899999999998 6665
Q ss_pred CC
Q psy2398 149 PN 150 (433)
Q Consensus 149 p~ 150 (433)
..
T Consensus 430 ~~ 431 (659)
T PTZ00153 430 NN 431 (659)
T ss_pred cc
Confidence 43
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.1e-06 Score=79.77 Aligned_cols=100 Identities=20% Similarity=0.342 Sum_probs=81.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..++||||+|+.|+.+|..|+++|++|+++|+.+.+++... . .
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~-----------------------------------~--~ 178 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL-----------------------------------D--P 178 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh-----------------------------------h--H
Confidence 37999999999999999999999999999999887643210 0 5
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE---EEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE---VELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~---v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.+.+.+.+..+.+++ .+++++.+..|+...+... +...++..+.+|.+++++|. .|+
T Consensus 179 ~~~~~~~~~l~~~gi--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~--~p~ 238 (415)
T COG0446 179 EVAEELAELLEKYGV--ELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGE--RPN 238 (415)
T ss_pred HHHHHHHHHHHHCCc--EEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecc--ccc
Confidence 677888888888887 5888999999987644322 56667778999999999998 554
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-07 Score=66.28 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=32.3
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCcee
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHY 209 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~ 209 (433)
+++|||+|.+|+|+|..|++.+.+||++.|++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999998643
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=4e-06 Score=79.50 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
.||+|||||++|+.+|..|++.|++|+|+|+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 69999999999999999999999999999987654
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.4e-06 Score=79.71 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEE--EEEc-cCcEEEeCEEEEccCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWE--VELS-NGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~--v~~~-~g~~~~~d~vIvAtG~~s 144 (433)
...+.+.+.+.+++.++ .++++++|+++..+. +++. +... ++..+.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv--~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGV--EIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCC--EEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 45677888888888887 699999999998752 3333 2332 334689999999999854
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=78.50 Aligned_cols=91 Identities=21% Similarity=0.411 Sum_probs=72.1
Q ss_pred CcEEEECCChHHHHHHHHHHh--------------cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSE--------------GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDY 73 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~--------------~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (433)
.+|+|||||+.|+..|..|.+ .+.+|+++++.+.+..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~----------------------------- 224 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG----------------------------- 224 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-----------------------------
Confidence 489999999999999999876 3688999998765410
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
.+ ...+.+++.+..++.++ +++++++|.+++. + .+.+++|+++.+|.||+|+|.
T Consensus 225 -------~~--~~~~~~~~~~~L~~~gV--~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 225 -------SF--DQALRKYGQRRLRRLGV--DIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred -------cC--CHHHHHHHHHHHHHCCC--EEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCC
Confidence 11 24566777888888888 5888999998864 3 366778888999999999997
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-05 Score=77.34 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
.+||+|||+|++|+++|..+++.|.+|+|+||...+||....
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 479999999999999999999999999999998888876543
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.5e-06 Score=80.43 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=75.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC-CCccccceEe---ecCCCccc----CCC--CCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS-CGRVYPSLHL---ISPKFNTQ----VPD--YPM 75 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~-~~~~~~~~~~---~~~~~~~~----~~~--~~~ 75 (433)
..+||+|||||.+|+.||.+.++.|.++.++--..+.=|.+ ..+| -+..-++... +.-...+. ... +.+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~m-sCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~ 81 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEM-SCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRM 81 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeec-ccccccCCcccceeEEeehhccchHHHhhhhcCCchhh
Confidence 34999999999999999999999999998887544322221 1111 0011111100 00000000 000 000
Q ss_pred CCCC--C------CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCC--eEEEEEccCcEEEeCEEEEccCCC
Q psy2398 76 PDNY--P------VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 76 ~~~~--~------~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~--~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
.+.. | ....+..+.+.++...+.. ++ -.++..|+.+...++ .+-|.+.+|..+.|+.||++||.+
T Consensus 82 LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL---~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 82 LNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNL---HLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred ccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCc---eehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 0000 1 1123445566666666554 33 234667777666433 467888899999999999999974
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-05 Score=80.29 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
.+||+|||+|.+||+||..+++.| +|+|+||....||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 479999999999999999999999 9999999887654
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-05 Score=79.43 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
+.||+|||+|.+||+||..+++.|.+|+|+||....|
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4699999999999999999999999999999987654
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-05 Score=79.40 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=30.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...||+|||+|.+||+||..++ +.+|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4589999999999999999997 569999999875
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-06 Score=81.97 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=38.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
++||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 369999999999999999999999999999999999996543
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-06 Score=85.73 Aligned_cols=41 Identities=32% Similarity=0.515 Sum_probs=37.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~ 48 (433)
++|+|||||++||+||+.|++.| ++|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 47999999999999999999987 899999999999997654
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-06 Score=84.99 Aligned_cols=41 Identities=29% Similarity=0.537 Sum_probs=37.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
.+|+|||||.+||+||+.|.+.|++|+|+|+++.+||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 47999999999999999999999999999999999997543
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=80.87 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=34.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
+..+||+|||+|.+|++||..+.+ |.+|+|+||.+..||
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg 45 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTS 45 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCC
Confidence 456899999999999999999964 999999999886555
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=85.83 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=39.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcC-----CCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGN-----INYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g-----~~v~v~e~~~~~Gg~~~~~ 49 (433)
+.+||+|||||++||+||..|++.| ++|+|+|+++.+||.+...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 4589999999999999999999887 8999999999999976543
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-06 Score=85.16 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=38.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~~Gg~~~~ 48 (433)
++||+|||||++||+||..|.++ |++|+|+|+++.+||....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 46999999999999999999998 9999999999999997654
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-06 Score=85.37 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..++||+|||||++||++|+.|.+. |++|+|+|+++.+||.....
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~ 55 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSV 55 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEe
Confidence 3567999999999999999999999 99999999999999975543
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-05 Score=78.03 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=30.7
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
|+|||+|.+||+||..+++.|.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999999999999999998744
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-06 Score=75.64 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=40.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
++|++|||||.+|+.+|..|+++|.+|.|+||++++||.+...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde 43 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence 4799999999999999999999999999999999999988765
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=6e-05 Score=75.61 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=35.9
Q ss_pred CCCC-CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 1 MKYK-NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 1 M~~~-~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
|+++ ...+||+|||+|.+|++||..+++. .+|+|+||....||
T Consensus 1 ~~~~~~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 1 MNTSPEHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred CCCCccccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 4443 3457999999999999999999986 89999999876655
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-06 Score=82.96 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=39.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNS 48 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~ 48 (433)
...+||+|||||++||+||.+|+++|. +|+|+|+++.+||.+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 456899999999999999999999998 69999999999986543
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-06 Score=80.92 Aligned_cols=41 Identities=32% Similarity=0.579 Sum_probs=38.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
++|+|+|||.+||+||+.|+++|++|+|+|+++.+||....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 47999999999999999999999999999999999997654
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.1e-05 Score=72.61 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=70.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|..|+.+|..|++.+.+|+++++.+.+. ...
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~----------------------------------------~~~ 185 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR----------------------------------------AEK 185 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC----------------------------------------CCH
Confidence 4689999999999999999999999999999865320 012
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEcc------CcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSN------GKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~------g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.+.+.+.+..+..++ ++..++.+++++.++. .-.|++.+ .+++.+|.||+|+|. .|+.
T Consensus 186 ~~~~~~~~~l~~~gV--~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~--~p~~ 250 (321)
T PRK10262 186 ILIKRLMDKVENGNI--ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH--SPNT 250 (321)
T ss_pred HHHHHHHhhccCCCe--EEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC--ccCh
Confidence 234455555556666 5788999999976532 22344332 136899999999998 5554
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.3e-06 Score=83.46 Aligned_cols=41 Identities=34% Similarity=0.417 Sum_probs=36.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc------CCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG------NINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~------g~~v~v~e~~~~~Gg~~~~ 48 (433)
++|+|||||++||+||+.|.+. |.+|+|+|+++.+||....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 5899999999999999999986 3799999999999997544
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.2e-06 Score=83.37 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=38.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
.||+|||||++||+||..|++.|++|+|+|+++.+||.....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~ 43 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF 43 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccee
Confidence 689999999999999999999999999999999999866543
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-05 Score=71.79 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
-..+.+-+.++.+.+|. .++|+++|+.++..++ ...+.+++|..+.+|+||+|.|..+
T Consensus 172 l~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGG--EIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCc--EEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 35667778888888887 6999999999998654 4677888898999999999999854
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=74.10 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+..|..|.+.+.+|+++.+..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 58999999999999999999999999999764
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00031 Score=66.98 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEccC--cEEEeCEEEEccCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNG--KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g--~~~~~d~vIvAtG~~ 143 (433)
...+.+.+.+.+++.|. .+..+++|.++..+++.++ +.+.++ .++.+|.||+|+|++
T Consensus 262 G~RL~~aL~~~~~~~Gg--~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGG--VMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHHCCC--EEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 45666777777777777 4777889999988766555 454554 479999999999996
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.2e-06 Score=83.59 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=35.5
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence 68999999999999999999999999999999998643
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.8e-06 Score=82.27 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+||+|||||.+||++|..|+++|.+|+|+||++.+||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 58999999999999999999999999999999999885543
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >KOG2404|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.6e-05 Score=69.43 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=35.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
..|+|||+|.+||+++..+...|-.|+++|+...+||.-.
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 4699999999999999999998778999999999998543
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.3e-06 Score=80.76 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=37.1
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+|+|||||++||++|..|.++|++|+|+|+++.+||.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999997643
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.5e-05 Score=78.86 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHH----hcCCCeEEEccCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELS----EGNINYDLYEMESD 41 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~----~~g~~v~v~e~~~~ 41 (433)
||+|||||.+||+||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.99 E-value=7e-05 Score=71.56 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=67.3
Q ss_pred CCcEEEECCChHHHHHHHHHHh----cC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE----GN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYP 80 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~----~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
..+|+|||+|++|+.+|..|.+ .| .+|+++. .+.+. +
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l------------------------------------~ 187 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL------------------------------------P 187 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc------------------------------------c
Confidence 3589999999999999999975 34 4788883 22210 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
. ....+.+.+.+..++.++ ++..+++|..++. + .+.+.++.++.+|.||+|+|.
T Consensus 188 ~--~~~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 188 G--FPAKVRRLVLRLLARRGI--EVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred c--CCHHHHHHHHHHHHHCCC--EEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCC
Confidence 0 123455667777788888 5888999988863 2 566777888999999999998
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.4e-05 Score=74.26 Aligned_cols=95 Identities=20% Similarity=0.230 Sum_probs=68.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|++.+.+|+++++.+.+. .
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~----------------------------------------~-- 389 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK----------------------------------------A-- 389 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC----------------------------------------h--
Confidence 4689999999999999999999999999999765330 0
Q ss_pred HHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeE-EEEEcc---C--cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIW-EVELSN---G--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~---g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
...+....+. .++ ++++++.++++..+++.. .|++.+ + .++.+|.|++|+|. .|+..
T Consensus 390 --~~~l~~~l~~~~gV--~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~--~Pn~~ 453 (515)
T TIGR03140 390 --DKVLQDKLKSLPNV--DILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL--VPNTE 453 (515)
T ss_pred --hHHHHHHHhcCCCC--EEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC--cCCch
Confidence 1223333433 467 588899999997653332 355433 2 35899999999998 55543
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.4e-05 Score=83.12 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+||+|||||.+||.||..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999999999999999764
|
|
| >KOG1298|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=67.38 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=32.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+...||+|||||.+|.+.|..|.+.|-+|+|+||.-
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 345799999999999999999999999999999853
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.4e-05 Score=81.71 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
..++|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 457999999999999999999999999999999988887644
|
|
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00013 Score=68.77 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=84.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
...|+++|+|..|+.+|..|...+.+|++|++.+.+ ++. .-..
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------------------------------~~~-----lf~~ 255 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------------------------------LPR-----LFGP 255 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------------------------------hhh-----hhhH
Confidence 357999999999999999999999999999987632 000 1135
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS 152 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~ 152 (433)
.+.+.+..+.++.++ ++..++.+.+++.+ +.--.|.+.++.++.+|.||+++|. .|+.+.+.
T Consensus 256 ~i~~~~~~y~e~kgV--k~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~--~p~t~~~~ 319 (478)
T KOG1336|consen 256 SIGQFYEDYYENKGV--KFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGI--KPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHhcCe--EEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecc--cccccccc
Confidence 677888888888888 58889999888876 3445677888999999999999999 78777655
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.4e-05 Score=78.10 Aligned_cols=41 Identities=32% Similarity=0.530 Sum_probs=38.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
+++|+|||||++||++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 46999999999999999999999999999999999998654
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.7e-05 Score=77.66 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=36.8
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
|..-+...||+|||+| +|++||.++++.|.+|+|+||.+..||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3433356899999999 999999999999999999999887664
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.2e-05 Score=77.44 Aligned_cols=40 Identities=35% Similarity=0.563 Sum_probs=36.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999986544
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.8e-05 Score=79.97 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=38.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
...+|+|||||++|+++|+.|.+.|++|+|+|+++.+||...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 357999999999999999999999999999999999988643
|
|
| >KOG2844|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=70.92 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
......+.+.+...|+++|. .|..+..|++|.-. ++.+-|.|..| .+++.+||.|+|.|.
T Consensus 183 ~~DP~~lC~ala~~A~~~GA--~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGA--LVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCc--EEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 45577788889999999998 58889999999765 67778888877 499999999999864
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.9e-05 Score=75.22 Aligned_cols=44 Identities=18% Similarity=0.082 Sum_probs=41.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
+.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 56999999999999999999999999999999999999988754
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=4e-05 Score=77.21 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=36.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC--CCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES--DLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~--~~Gg~ 45 (433)
..+||+|||+|.+||+||..+++.|.+|+|+||.+ ..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 56899999999999999999999999999999998 56664
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=68.42 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=64.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccce--EeecCCCcccCCCCCCC-----
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSL--HLISPKFNTQVPDYPMP----- 76 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----- 76 (433)
..++|+|||||.++..++..|.+.+- +|+++-|+..+ .... +..+ .+..|..+..|...+..
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~---~~~d------~s~f~ne~f~P~~v~~f~~l~~~~R~~~ 259 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF---FPMD------DSPFVNEIFSPEYVDYFYSLPDEERREL 259 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS----EB----------CCHHGGGSHHHHHHHHTS-HHHHHHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc---CCCc------cccchhhhcCchhhhhhhcCCHHHHHHH
Confidence 45799999999999999999999864 79999887643 0000 0000 11111111111111100
Q ss_pred --CC---CCCCCCHHHHHHHHHH-HHHHc-C-CCcceEeCcEEEEEEEeC-CeEEEEEcc-----CcEEEeCEEEEccCC
Q psy2398 77 --DN---YPVYPNHSMMLDYLRS-YAKKF-D-VYNHSIFNTEVINLEQYE-DIWEVELSN-----GKKKKYDFIAVCNGA 142 (433)
Q Consensus 77 --~~---~~~~~~~~~~~~~l~~-~~~~~-~-~~~~i~~~~~V~~v~~~~-~~~~v~~~~-----g~~~~~d~vIvAtG~ 142 (433)
.. ...-++...+.+..+. |.++. + -+-++..+++|+.++.++ ++|++++.+ ..++.+|.||+|||-
T Consensus 260 l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 260 LREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp HHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred HHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 00 0011222222111111 11121 1 122466799999999986 699999876 235899999999995
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.6e-05 Score=76.81 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
..++|+|||||++||++|.+|.+.|++|+++|+++.+||..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcc
Confidence 45789999999999999999999999999999998888853
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00043 Score=62.22 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=35.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC--CCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD--LGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~--~Gg~ 45 (433)
...||+|||||.+||.+|.+|++.|.+|+++|+... +||+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 457999999999999999999999999999997653 6664
|
|
| >KOG2853|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00055 Score=61.77 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~ 41 (433)
..||+|||||-.|.+.|.-|.++ |++|+|+|+.+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 46999999999999999999875 799999999874
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.9e-05 Score=77.78 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=39.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
...+|+|||||++|+.+|..|.+.|++|+|+|+++.+||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 3579999999999999999999999999999999999997653
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00032 Score=70.22 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=66.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||||.+|+.+|..|+..+.+|+++++.+.+. . .
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~---------------------------------------~-~- 389 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK---------------------------------------A-D- 389 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc---------------------------------------c-c-
Confidence 3689999999999999999999999999999765430 0 0
Q ss_pred HHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeE-EEEEc---cC--cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIW-EVELS---NG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~-~v~~~---~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++...... .++ ++++++.++++..+++.. .+++. ++ .++.+|.|++|+|. .|+.
T Consensus 390 ---~~l~~~l~~~~gI--~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~--~p~~ 451 (517)
T PRK15317 390 ---QVLQDKLRSLPNV--TIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL--VPNT 451 (517)
T ss_pred ---HHHHHHHhcCCCc--EEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC--ccCc
Confidence 223333333 466 588899999998753332 24433 23 35899999999998 5543
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00023 Score=67.56 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCC-eEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~ 40 (433)
.+|+|||+|+.|+.+|..|.+.|.+ |+++++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999999997 99999754
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00055 Score=67.48 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=66.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+|+|||+|..|+.+|..|.+.|. +|+++++++.. ..+..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~--------------------------------------~~~~~ 314 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE--------------------------------------EMPAS 314 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc--------------------------------------cCCCC
Confidence 4689999999999999999999998 89999976421 00101
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe---EEEEE-----------------ccCcEEEeCEEEEccCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEVEL-----------------SNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~---~~v~~-----------------~~g~~~~~d~vIvAtG~~s~ 145 (433)
.. ..+.+++.|+ ++.+++.+..+..+++. .++.. .++.++.+|.||+|+|. .
T Consensus 315 ~~----~~~~~~~~GV--~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~--~ 386 (457)
T PRK11749 315 EE----EVEHAKEEGV--EFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ--T 386 (457)
T ss_pred HH----HHHHHHHCCC--EEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC--C
Confidence 11 1234556787 58889999888765432 33221 12346899999999998 5
Q ss_pred CC
Q psy2398 146 AR 147 (433)
Q Consensus 146 p~ 147 (433)
|+
T Consensus 387 p~ 388 (457)
T PRK11749 387 PN 388 (457)
T ss_pred CC
Confidence 55
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.4e-05 Score=75.67 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=37.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
..+||+|||+|.+|+++|..+++.|.+|+|||+....||+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 46899999999999999999999999999999988777753
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.8e-05 Score=75.85 Aligned_cols=40 Identities=15% Similarity=0.364 Sum_probs=36.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
...||+|||+|.+||+||..+++.|.+|+|+||.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3579999999999999999999999999999999887763
|
|
| >KOG2311|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00027 Score=66.44 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+||+|||||.+|+.||.+.++.|.+.+++-.+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 46899999999999999999999999988887543
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00073 Score=66.35 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||||..|+.+|..|.+.|.+|++++++.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3689999999999999999999999999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00071 Score=63.95 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~ 148 (433)
...++.+.+...+++.++ .++++++|+.| +++.|.+.+.++ ..+.+|+||+|||+.+.|+.
T Consensus 84 ~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGV--QFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred CHHHHHHHHHHHHHHCCC--EEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcccccc
Confidence 578899999999999999 59999999999 344688887543 46899999999999765543
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=65.88 Aligned_cols=138 Identities=12% Similarity=0.173 Sum_probs=75.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce----eeccc---C--CCCChhHHhHhhc---hhhcCchHHH-HHH
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH----YYPKF---I--DGKPTPQWMLQLG---NKFSSKEETM-AYI 240 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~----~~p~~---~--~~~~~~~~~~~~p---~~~~~~~~~~-~~~ 240 (433)
..|+|||+|++|+=.|..+++.|.+|.++.+.+.. .+.-- + .-.+.+.++...| ..+.. .+. .-.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~s--al~~ft~ 81 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKS--ALARFTP 81 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHH--HHHhCCH
Confidence 36999999999999999999999999999987642 11100 0 0011333443344 22211 000 111
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCc------cChhhhhcccCCCeee--cCCceeeeC----CeEEecCCceeecc
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPI------MNSQILYHIGHGDILP--KDDIKNLNG----NIVHFVDDTHIEVD 308 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~--~~~v~~~~~----~~v~~~dG~~~~~D 308 (433)
+.+..++. .+|+..-........|. +-+-+...+...+|++ +..|.++.. ..+.+.+|+++.||
T Consensus 82 ~d~i~~~e----~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d 157 (408)
T COG2081 82 EDFIDWVE----GLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCD 157 (408)
T ss_pred HHHHHHHH----hcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEcc
Confidence 11121221 22222111111111111 1133444456666665 567777753 34667888899999
Q ss_pred EEEEccCCC
Q psy2398 309 TIIYATGYN 317 (433)
Q Consensus 309 ~vi~atG~~ 317 (433)
.+|+|||=+
T Consensus 158 ~lilAtGG~ 166 (408)
T COG2081 158 SLILATGGK 166 (408)
T ss_pred EEEEecCCc
Confidence 999999944
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.6e-05 Score=73.89 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=37.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
+||+|||+||+|+.+|..|++.|++|++||++...|+.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 5999999999999999999999999999999999888773
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.6e-05 Score=79.51 Aligned_cols=44 Identities=25% Similarity=0.507 Sum_probs=40.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..++|+|||||++|+++|..|.+.|++|+|||+++.+||.|...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 34799999999999999999999999999999999999987654
|
|
| >KOG1276|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0001 Score=68.47 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=36.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCC--eEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNIN--YDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~--v~v~e~~~~~Gg~~~~ 48 (433)
.++|+|+|||++||++|++|++++.+ +++||+.+.+||....
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 47999999999999999999999765 5669999999986554
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=65.28 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||+|..|+.+|..|.+.|.+|+++.++.
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4699999999999999999999999999999764
|
|
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00015 Score=70.85 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=36.1
Q ss_pred ceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 104 HSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 104 ~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
+|+++++|++|+.+++++.+++.++.++.||+||+|+....
T Consensus 225 ~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 225 EIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp GEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred eeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence 59999999999999999999999999999999999998743
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >KOG2852|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00065 Score=59.91 Aligned_cols=38 Identities=29% Similarity=0.572 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC------CCeEEEccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN------INYDLYEMESDLGG 44 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g------~~v~v~e~~~~~Gg 44 (433)
.++|+|+|||+.|+++|++|.+++ +.+++||.....||
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 479999999999999999999987 79999998776554
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0014 Score=64.81 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=61.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++|+|||+|..|+.+|..+.+.|. +|++++........+. .....+.++.
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~---------------------------~~~~~~~~~~- 332 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN---------------------------KNNPWPYWPM- 332 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccc---------------------------cccCCcccch-
Confidence 4689999999999999999998886 6887765432210000 0000111111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EE-----EccC---------cEEEeCEEEEccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VE-----LSNG---------KKKKYDFIAVCNGA 142 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~-----~~~g---------~~~~~d~vIvAtG~ 142 (433)
....+.+.+.|+ .+++++.++++..+++..+ |. ..+| .++.+|.||+|+|.
T Consensus 333 ----~~~~~~~~~~GV--~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 333 ----KLEVSNAHEEGV--EREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred ----HHHHHHHHHcCC--eEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 111233455677 5888888888864333322 22 1111 46899999999997
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=68.08 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~ 41 (433)
||++|||+|++|..+|.+|++.+ .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999864
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=59.79 Aligned_cols=37 Identities=30% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+..-.|+|||+|++|+-.|..+++.+.+|.++.+.+.
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3345799999999999999999999999999998753
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00044 Score=67.83 Aligned_cols=91 Identities=21% Similarity=0.372 Sum_probs=61.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..... .+. ..+.+
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~-----------~~~--------------~~~~~---------- 248 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD-----------TYE--------------KLPVP---------- 248 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc-----------ccc--------------cCcCC----------
Confidence 4789999999999999999999999999998864220 000 00000
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS 152 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~ 152 (433)
. ..+..+..|..+.. ++ .|.+.+|+.+.+|.||+|||. .+..|-++
T Consensus 249 -------------~--~~v~~~~~I~~~~~-~g--~V~f~DG~~~~~D~Ii~~TGy--~~~~pfL~ 294 (461)
T PLN02172 249 -------------Q--NNLWMHSEIDTAHE-DG--SIVFKNGKVVYADTIVHCTGY--KYHFPFLE 294 (461)
T ss_pred -------------C--CceEECCcccceec-CC--eEEECCCCCccCCEEEECCcC--CccccccC
Confidence 0 02334444544432 23 377788888999999999998 66665443
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00096 Score=59.88 Aligned_cols=36 Identities=31% Similarity=0.294 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..-.|+|||+|++|+=.|..+++.+.+|.++.|++.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 344699999999999999999999999999999863
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00021 Score=75.96 Aligned_cols=35 Identities=23% Similarity=0.031 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+|+|+|||+|++|+-.|..|++.|.+|+++.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 58999999999999999999999999999999864
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0064 Score=58.51 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~~Gg~~~~ 48 (433)
.++.=|||+|+++|+||.+|-+. |-+|+|+|+.+..||.+.-
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg 47 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDG 47 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccC
Confidence 35788999999999999999986 5599999999988876543
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00028 Score=74.25 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..+|+|+|||+|++|+..|..|++.|.+|+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3578999999999999999999999999999997753
|
|
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00045 Score=64.32 Aligned_cols=99 Identities=16% Similarity=0.291 Sum_probs=69.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc--------------CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--------------NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDY 73 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--------------g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (433)
-.++||||||.|+..|.+|+.. .++|+++|..+.+=
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------ 268 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------ 268 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------------------
Confidence 4789999999999999999763 45899999877540
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
-+-...+.+|.++...+.++ .+..++.|..|+. ....+.+.+| +.+.|--+|-|||....|..
T Consensus 269 --------~mFdkrl~~yae~~f~~~~I--~~~~~t~Vk~V~~--~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 269 --------NMFDKRLVEYAENQFVRDGI--DLDTGTMVKKVTE--KTIHAKTKDGEIEEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred --------HHHHHHHHHHHHHHhhhccc--eeecccEEEeecC--cEEEEEcCCCceeeecceEEEecCCCCCchhh
Confidence 00124456666666666676 5778888888764 3334444444 35889999999998555544
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0014 Score=66.26 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+ ....
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~----------------------------------------~~~~ 182 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF----------------------------------------TCAK 182 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc----------------------------------------ccCH
Confidence 468999999999999999999999999999987532 0001
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEE---EccCcEE----EeCE----EEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVE---LSNGKKK----KYDF----IAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~---~~~g~~~----~~d~----vIvAtG~~s~p~~ 148 (433)
.+ .....++.++ .+++++.|+++..++....+. ..+|+.. .+|. |++|+|. .|+.
T Consensus 183 ~~---~~~~~~~~gV--~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~--~Pn~ 248 (555)
T TIGR03143 183 LI---AEKVKNHPKI--EVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY--APSS 248 (555)
T ss_pred HH---HHHHHhCCCc--EEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCC--CCCh
Confidence 11 1222233466 588899999997543322222 2335433 2565 9999998 5554
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00028 Score=70.38 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=36.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 3 YKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 3 ~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
+...++||+|||||.+||.||..+++.|++|+|+||....+
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 34567899999999999999999999999999999977543
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00077 Score=66.97 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|.+|+++|..|+++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999753
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00026 Score=63.51 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+||+|||||.+|++|+++|+++|.++.++.++.
T Consensus 3 fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 3 FDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred ccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 899999999999999999999999999998754
|
|
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00089 Score=60.62 Aligned_cols=104 Identities=12% Similarity=0.165 Sum_probs=76.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
+.+++++|+|||+.++..|--++..|.++.+|-|.+.+ . - .|
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv-------------L-----------R------------~F-- 228 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV-------------L-----------R------------GF-- 228 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh-------------h-----------c------------ch--
Confidence 45789999999999999999999999999999887643 0 0 11
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
.+.+.+.+.+..+.-++ +++-++.++++.+. ++...+.+.++....+|.|+.|+|. .|+...
T Consensus 229 D~~i~~~v~~~~~~~gi--nvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR--~Pntk~ 291 (478)
T KOG0405|consen 229 DEMISDLVTEHLEGRGI--NVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR--KPNTKG 291 (478)
T ss_pred hHHHHHHHHHHhhhcce--eecccccceeeeecCCCceEEEEeccccccccEEEEEecC--CCCccc
Confidence 13445555555566677 58888999999887 4445666666655569999999997 555443
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00084 Score=64.71 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
...+|+|||||.+|+-+|..|++.|.+|+++.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 356899999999999999999999999999999864
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00028 Score=71.37 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHh-cCCCeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~v~e~~~ 40 (433)
...+|++|||||++|+.+|..|++ .|.+|+|+|+++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 456899999999999999999999 799999999985
|
|
| >KOG2665|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.002 Score=57.62 Aligned_cols=39 Identities=31% Similarity=0.566 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG 43 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G 43 (433)
...+|++|||||+.|++.|++|.-+ +++|.|+|+...++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 3568999999999999999999876 88999999987654
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0077 Score=59.48 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
.++|+|||+|..|+.+|..+.+.|. +|+++++++.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 3689999999999999999999996 7999998653
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >KOG3855|consensus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0051 Score=57.26 Aligned_cols=38 Identities=29% Similarity=0.611 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc----CCCeEEEccC--CCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG----NINYDLYEME--SDLG 43 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~--~~~G 43 (433)
+.+||+|+||||.|++.|..|... ..++.++|.. +.++
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~ 78 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLG 78 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccc
Confidence 478999999999999999999865 4699999987 4444
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00078 Score=64.30 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=67.9
Q ss_pred EEEEcCCCCHHHHHHHHhcc--CCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCc
Q psy2398 176 VLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVD 253 (433)
Q Consensus 176 v~VvG~G~sg~d~a~~l~~~--~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (433)
|+|||+|.+|..+|..|++. +.+|.++.+.+. +.+ ....-.|...+...... . .+. .+...-..
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~-~~~----~~tw~~~~~~~~~~~~~-----~-~~~---~v~~~W~~ 67 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT-IGG----NHTWSFFDSDLSDAQHA-----W-LAD---LVQTDWPG 67 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC-CCC----cccceecccccchhhhh-----h-hhh---hheEeCCC
Confidence 89999999999999999986 899999998752 111 00000000001100000 0 000 00000000
Q ss_pred CCCCCCC--CCCC-CCCCccChhhhhc----ccCCCeeecCCceeeeCCeEEecCCceeeccEEEEccCCCC
Q psy2398 254 YGLKKPD--HPLD-AAHPIMNSQILYH----IGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNR 318 (433)
Q Consensus 254 ~~~~~~~--~~~~-~~~~~~~~~~~~~----~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~ 318 (433)
+.+..+. ..+. ........++.+. +..+ +.....|.+++.++|++.||+++.+|.||.|.|.++
T Consensus 68 ~~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 68 YEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CEEECcchhhhcCCCceEEEHHHHHHHHHHhhccc-EEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 1000010 0000 0011112333333 3343 656667888888889899999999999999999765
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.003 Score=66.25 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~ 40 (433)
.++|+|||||..|+.+|..+.+.|.+ |+++++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999999997 99999764
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.22 E-value=7.3e-05 Score=64.81 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=29.1
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999996654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0036 Score=67.51 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------------
Confidence 4689999999999999999999996 57888875422
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc----cCcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS----NGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~----~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
...+....++.++ .++.++.|+.+..++..-.|++. ++.++.+|.|+++.|. .|+.
T Consensus 354 ---~~~l~~~L~~~GV--~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~--~Pnt 413 (985)
T TIGR01372 354 ---SPEARAEARELGI--EVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGW--TPVV 413 (985)
T ss_pred ---hHHHHHHHHHcCC--EEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCc--Cchh
Confidence 0112344566677 58889999988764332223332 3457899999999998 5554
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG3923|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=57.82 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=28.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-------CCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-------INYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-------~~v~v~e~~~ 40 (433)
+.+|+|||||..||++|..+++.. .+|+++..+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 479999999999999999998853 5889987544
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00073 Score=55.91 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=25.9
Q ss_pred EEEcCCCCHHHHHHHHhcc-----CCcEEEEEecCc
Q psy2398 177 LVVGAGNSGCDIAVDASHH-----SEKVYHSTRRGY 207 (433)
Q Consensus 177 ~VvG~G~sg~d~a~~l~~~-----~~~V~~~~r~~~ 207 (433)
+|||+|.+|+-++..|.+. ..+|+++.+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999987 357888887553
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0057 Score=52.08 Aligned_cols=40 Identities=28% Similarity=0.209 Sum_probs=34.8
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 167 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 167 ~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+..++..-.|+|||+|+||.-.|+.|++.+-+|.++.|+.
T Consensus 24 ~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 24 DLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred HHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 3344556689999999999999999999999999999985
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0017 Score=60.21 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc----CCCeE-EEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG----NINYD-LYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~-v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
++..|.|||.|+-|-..|..|.+. |.+|. ||+..... ....|
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm---------------------------------~kiLP 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM---------------------------------EKILP 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh---------------------------------hhhhH
Confidence 357899999999999998888774 34433 33322111 01111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.-+.++-....++-|+ .++-+..|+.+....+...+.+.||.++..|.||+|+|. .|+.
T Consensus 393 -----eyls~wt~ekir~~GV--~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~--ePN~ 451 (659)
T KOG1346|consen 393 -----EYLSQWTIEKIRKGGV--DVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE--EPNS 451 (659)
T ss_pred -----HHHHHHHHHHHHhcCc--eeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC--CCch
Confidence 1122333344556677 588899999998887888999999999999999999998 6664
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0021 Score=55.72 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=24.1
Q ss_pred EEEcCCCCHHHHHHHHhccCCc-EEEEEecC
Q psy2398 177 LVVGAGNSGCDIAVDASHHSEK-VYHSTRRG 206 (433)
Q Consensus 177 ~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~ 206 (433)
+|||+|++|+-+|..|.+.+.+ |+++.|++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999988 99999874
|
... |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.016 Score=59.81 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
.++|+|||+|..|+.+|..+.+.|. +|+++.++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4789999999999999999999987 599998764
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00024 Score=66.98 Aligned_cols=31 Identities=39% Similarity=0.668 Sum_probs=25.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.|+|||||.+|+|.|..+++.|.+|.++...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~ 31 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHN 31 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeec
Confidence 4899999999999999999999999999533
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=68.56 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..+|+|+|||+|++|+.+|..|+..|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468999999999999999999999999999999754
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00073 Score=66.29 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhc--cCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASH--HSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~--~~~~V~~~~r~~~ 207 (433)
.+++|+|||+|++|+..|..|++ .+.+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 46789999999999999999986 6899999998873
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.007 Score=56.35 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=36.2
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhcc-CCcEEEEEecC
Q psy2398 162 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 206 (433)
Q Consensus 162 ~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~-~~~V~~~~r~~ 206 (433)
...+.+..++..-.|+|||+|.+|+=.|..|++. +.+|+++.+..
T Consensus 81 ~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 81 RRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred HhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 3344444555666899999999999999999976 78999999875
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0013 Score=59.22 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
..|-|||||.+|..||+.++++|++|.++|-++.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 57999999999999999999999999999987643
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0048 Score=60.31 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCc-EEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~ 206 (433)
...|+|||+|.||+-+|..|.+.+.. +.++.++.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 35799999999999999999999877 99999885
|
|
| >KOG4254|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00084 Score=62.92 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=37.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
..+|++|||+|..||++|..|++.|.+|+++|++..+||.-
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaa 53 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAA 53 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcce
Confidence 46899999999999999999999999999999997777743
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0011 Score=66.44 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
....+|++|||+|.+|..+|..|++.|.+|+++|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4467999999999999999999999999999999984
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0021 Score=68.16 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+++|+|||||++|+..|..|++.|.+|+++.+++
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 36799999999999999999999999999999875
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0069 Score=59.14 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|++|.-+|..|++.|.+|.++.+++.
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 699999999999999999999999999998764
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.017 Score=59.68 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
.++|+|||+|..|+.+|..+.++|. +|+++.+++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 3589999999999999999999987 699988764
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.02 Score=56.87 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
.++|+|||||..|+.+|..+.+.|. +|+++|..+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4689999999999999988888875 7999987653
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0025 Score=61.11 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 45799999999999999999999999999998864
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0038 Score=62.35 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=72.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
..-+|||+|.-|+.+|..|...|.+++|++-.+.+ .... . ...
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--MerQ----------------------------------L-D~~ 188 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--MERQ----------------------------------L-DRT 188 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH--HHHh----------------------------------h-hhH
Confidence 45799999999999999999999999999865432 0000 0 022
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
-...|+...++.++ +++++...+.+...+..-.+.+.+|..+.||.||.|+|. .|+.
T Consensus 189 ag~lL~~~le~~Gi--~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI--rPn~ 245 (793)
T COG1251 189 AGRLLRRKLEDLGI--KVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI--RPND 245 (793)
T ss_pred HHHHHHHHHHhhcc--eeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc--cccc
Confidence 24556667777787 466666666665545555678889988999999999999 6654
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0025 Score=63.30 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+.+++|+|+|+|.+|+++|..|.+.|.+|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 457899999999999999999999999999987654
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0014 Score=70.30 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+++|+|||+|++|+..|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 36899999999999999999999999999999775
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0097 Score=57.02 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=31.3
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|+|||||.+|+-+|..|++.|.+|+++.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 699999999999999999999999999999874
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.067 Score=50.09 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=34.0
Q ss_pred ceEeCcEEEEEEEeCCe-EEEEEcc-----CcEEEeCEEEEccCCCCCCCCCCC
Q psy2398 104 HSIFNTEVINLEQYEDI-WEVELSN-----GKKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 104 ~i~~~~~V~~v~~~~~~-~~v~~~~-----g~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
++.-+++|..++.++++ +.+++.. ..++++|.||+|||- ....|.+
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY--~~~~P~f 345 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGY--RRAVPSF 345 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEeccc--ccCCchh
Confidence 35558899999987544 8887654 246889999999998 5566644
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.026 Score=54.73 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++|+|||+|.||.-.|..|.+.|.+++++.|++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 5789999999999999999999999999999986
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.002 Score=64.92 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHhcC-CCeEEEccCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGN-INYDLYEMESD 41 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~ 41 (433)
|++|||||.+|+.+|.+|++.+ ++|+|+|+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 69999999863
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.025 Score=52.15 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=66.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||+|-+.+..|..|.+.+-+|+++=|++.+ ...
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~----------------------------------------ra~- 181 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF----------------------------------------RAE- 181 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc----------------------------------------CcC-
Confidence 359999999999999999999999999999988654 111
Q ss_pred HHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeC-CeEEEEEccC--cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYE-DIWEVELSNG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
..+.+.+.+. ++ .+++++.+.++.-++ ...++....+ ..+.+|.|+++.|. .|+.
T Consensus 182 ---~~~~~~l~~~~~i--~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~--~p~~ 240 (305)
T COG0492 182 ---EILVERLKKNVKI--EVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGH--LPNT 240 (305)
T ss_pred ---HHHHHHHHhcCCe--EEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCC--CCch
Confidence 2233333333 44 588899999988654 3333332212 25789999999998 5553
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.072 Score=54.91 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
.++|+|||+|..|+.+|..+.+.|. +|+++.+++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4689999999999999999998886 7999987653
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0042 Score=59.75 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=25.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|++|+=.|..+++.+.+|.++.|.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~ 34 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR 34 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 489999999999999999999999999999864
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0052 Score=53.63 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=24.6
Q ss_pred CCeEEecCCceeeccEEEEccCCCCCC
Q psy2398 294 GNIVHFVDDTHIEVDTIIYATGYNRHF 320 (433)
Q Consensus 294 ~~~v~~~dG~~~~~D~vi~atG~~~~~ 320 (433)
++.|++.+|.++.++.+.+||||+|.+
T Consensus 80 ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 80 EHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred cceEEecCCceeeEEEEEEecCCCcce
Confidence 467899999999999999999999974
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0098 Score=59.59 Aligned_cols=32 Identities=34% Similarity=0.563 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||||.+|++.|..+++.|.+|.++.+++
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 59999999999999999999999999999874
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0092 Score=58.04 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHh-ccCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDAS-HHSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~-~~~~~V~~~~r~~~ 207 (433)
..++|+|||+|++|+..|..|+ +.+.+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4679999999999999999876 45899999999874
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.016 Score=55.50 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhcc--CC-cEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHH--SE-KVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~--~~-~V~~~~r~~ 206 (433)
++|+|||+|.||+.+|.+|++. .. .|.++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 4799999999999999999986 22 388888765
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0049 Score=62.36 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..+|++|||||.+|+.+|..|.+ +.+|+|+|++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35899999999999999999999 689999999863
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.046 Score=52.90 Aligned_cols=91 Identities=11% Similarity=-0.030 Sum_probs=65.6
Q ss_pred EEECCChHHHHHH-HHHH----hcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 11 CIIGGGPLGIGLG-RELS----EGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 11 ~IIGaG~~Gl~~a-~~l~----~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+|++.|..|+..+ ..+. +.|.+|++++..+.. .+.
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps----------------------------------------lpG 258 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS----------------------------------------VPG 258 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC----------------------------------------Cch
Confidence 5678888888877 4443 459999999876532 122
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEE-EEccC--cEEEeCEEEEccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV-ELSNG--KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v-~~~~g--~~~~~d~vIvAtG~~ 143 (433)
.++.+.+.+..++.++ .+..+++|++++.+++.... .+.++ ..+.+|.||+|||.+
T Consensus 259 ~rL~~aL~~~l~~~Gv--~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 259 LRLQNALRRAFERLGG--RIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 3577778777777787 58899999999877655443 33344 358999999999973
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.013 Score=58.41 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||+|.+|+-.|..|.+...+|.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 5799999999999999999999888999888764
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG0042|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0024 Score=61.28 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=38.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
...+||+|||||..|..||.-.+-+|+++.++|+.+...|+-...
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkS 109 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKS 109 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccc
Confidence 345999999999999999999999999999999998766654433
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.017 Score=55.62 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=29.7
Q ss_pred EEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 176 v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
|+|||+|.+|.-+|..|++.|.+|.++.+++.
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 89999999999999999999999999998753
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >KOG2960|consensus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0014 Score=55.03 Aligned_cols=42 Identities=19% Similarity=0.482 Sum_probs=34.8
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC-CcccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG-GVWNSQ 49 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G-g~~~~~ 49 (433)
.||+|+|||.+||++|+.+..+ +++|.+||..-..| |.|.-.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGG 121 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGG 121 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccc
Confidence 5999999999999999999865 67999999876654 566544
|
|
| >TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.019 Score=55.29 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p 146 (433)
....+...+.+.+.+ |+ .+++++.|+.++.+++.|.|++.+|..+.+|.||+|+|.++..
T Consensus 133 dp~~~~~~l~~~~~~-G~--~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RL--TLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred ChHHHHHHHHhccCC-Cc--EEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccccc
Confidence 445666666666666 66 5888999999998878899999888778999999999997543
|
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.022 Score=54.89 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|+|||+|.+|+=+|..|++.|-+|+++.+.+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 469999999999999999999999999999983
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.029 Score=54.62 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~ 207 (433)
+|+|||+|.+|+-+|..|++.| -+|+++.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 6999999999999999999987 49999999864
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0058 Score=54.86 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.5
Q ss_pred Cceeee--CCeEEecCCceeeccEEEEccCCCCCCCCC
Q psy2398 288 DIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFI 323 (433)
Q Consensus 288 ~v~~~~--~~~v~~~dG~~~~~D~vi~atG~~~~~~~l 323 (433)
.|++++ .++|.+.+|+++.+|.+|+|+|.+-++.-+
T Consensus 113 kv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~I 150 (446)
T KOG3851|consen 113 KVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKI 150 (446)
T ss_pred HHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchh
Confidence 345553 578999999999999999999999987644
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.029 Score=53.69 Aligned_cols=34 Identities=29% Similarity=0.222 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999999999999999875
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.01 Score=49.09 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||||..|.++|..|+++|.+|+++.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999864
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.006 Score=58.42 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=28.9
Q ss_pred EEEEcCCCCHHHHHHHH--hccCCcEEEEEecCc
Q psy2398 176 VLVVGAGNSGCDIAVDA--SHHSEKVYHSTRRGY 207 (433)
Q Consensus 176 v~VvG~G~sg~d~a~~l--~~~~~~V~~~~r~~~ 207 (433)
|+|||+|++|.-+|..| ++.+.+|.++.+++.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 89999999999999999 677999999988764
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.034 Score=55.49 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCC--cEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~--~V~~~~r~~ 206 (433)
++|+|||+|.+|+=+|..|.+.+. +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 579999999999999999987643 799998864
|
|
| >KOG2614|consensus | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.07 Score=50.07 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.+|+|||||.+|+-.|..|++.|-+|.+...+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 4799999999999999999999999999998653
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.074 Score=48.85 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..|++.+.+|+++.+++.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 489999999999999999999999999999864
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.1 Score=53.57 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=25.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC------CeEEEc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI------NYDLYE 37 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~------~v~v~e 37 (433)
..+|+|||||..|+.+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4799999999999999999998753 566654
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.072 Score=53.50 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=29.6
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+++|..+++.+.+|.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 48999999999999999999999999999864
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.012 Score=50.02 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=27.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|+|||.|..|+.+|..|++.|++|+.+|....
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.046 Score=54.36 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4699999999999999999999999999999864
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.047 Score=45.52 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCCCC-HHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~s-g~d~a~~l~~~~~~V~~~~r~ 205 (433)
.+.+++++|||+|.+ |.-+|..|.+.+.+|+++.|+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 467999999999985 888999999998889988865
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.012 Score=44.73 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
+.++++|+|||+|..|..=+..|.+.+.+|+++.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 356899999999999999999999999999999865
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.023 Score=55.50 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.9
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|++|+-+|..|++.|.+|.++.|.+.
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 699999999999999999999999999998764
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.019 Score=52.62 Aligned_cols=36 Identities=14% Similarity=0.445 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...+|+|||+|..|...|..|+..|++|+++|..+.
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 456899999999999999999999999999998764
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.013 Score=40.62 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=27.3
Q ss_pred EEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 178 VVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 178 VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999999864
|
... |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.035 Score=48.29 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.++++|+|||||..|..=+..|.+.+.+||++...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 45889999999999999999999999999998743
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.023 Score=50.07 Aligned_cols=34 Identities=38% Similarity=0.609 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++++|||+|..|.+.|..|.+.|.+|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999998764
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.024 Score=48.02 Aligned_cols=32 Identities=25% Similarity=0.592 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||||..|...|..++..|++|+++|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999865
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.03 Score=51.96 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...+|+|||+|..|...|..++..|++|+++|..+.
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 446899999999999999999999999999998653
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.034 Score=53.93 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=30.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
..|+|||+|.+|.-+|..|++.|-+|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999986
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.022 Score=53.11 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.|||.|+.||..|..|++.|++|+++|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999765
|
|
| >KOG2311|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.15 Score=48.68 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=28.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.|+|||||-.|+|.|...++.|.+.+++..+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 5999999999999999999999999888865
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.057 Score=49.15 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
+++||+++|+|.|. .|.-++..|...+..|++++|+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 56799999999997 9999999999888899998874
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.024 Score=56.05 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+|+|||+|++|+++|+.|.+.|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998754
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.031 Score=54.15 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhccC--CcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~--~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..|++.| .+|+++.+++.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 4899999999999999999985 89999999864
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.033 Score=58.32 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..|++|.|||+|++|.-.|..|-+.|..|++..|+..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 4589999999999999999999999999999999863
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.031 Score=55.68 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=28.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.|+|||+|++|+-+|..+++.|.+|.++.+.
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 6999999999999999999999999999764
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.2 Score=50.89 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=29.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~ 40 (433)
..+|+|||+|..|+.++..+.+.+ .+|+++.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 468999999999999999898888 4688888764
|
|
| >TIGR02352 thiamin_ThiO glycine oxidase ThiO | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.092 Score=49.38 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEEccCcEEEeCEEEEccCCCCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g~~~~~d~vIvAtG~~s~p 146 (433)
......+...+.+.+.+.|+ +++.+++|+.++.+++.+ .|.+.+| ++.||.||+|+|.++..
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~--~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGV--EIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred eEChHHHHHHHHHHHHHcCC--EEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 34467778888888888887 588999999999876655 4666666 79999999999997543
|
This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. |
| >KOG1238|consensus | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.025 Score=56.12 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDL 42 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~ 42 (433)
..||.+|||||.+|+..|..|.+. .++|.++|++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 468999999999999999999997 5799999998764
|
|
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.03 Score=54.08 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=35.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..+||+|+|.|..-.-.|..|++.|.+|+.+|+++.-||.|..-
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl 46 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASL 46 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcc
Confidence 67999999999999999999999999999999999999988754
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.086 Score=51.32 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||||-.|+|.|...++.|.++.++.-..
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 69999999999999999999999998888663
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.046 Score=47.31 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|+|||||..|..-+..|.+.|.+|+|+++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34689999999999999999999999999999753
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.043 Score=51.16 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|+|||+|..|...|..|++.|.+|+++.+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 44689999999999999999999999999999854
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.027 Score=42.84 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
+..+|+|||+|..|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4579999999999999999999999999999986
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.037 Score=53.52 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=32.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYP 211 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p 211 (433)
.|+|||+|++|.-+|..|++.|.+|.++.+.+..-.|
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k 41 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK 41 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 6999999999999999999999999999998754333
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.038 Score=51.38 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|.|||+|..|.+.|..|+++|++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998753
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.05 Score=45.54 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=29.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+.+|+|+|+|.+|..|+..|...|.+++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35799999999999999999999999999999754
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.13 Score=46.72 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+.||+++|||.|. .|.-+|..|...+..|++++++.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 57799999999988 99999999999999999998754
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.032 Score=53.43 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=32.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 208 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~ 208 (433)
++|+|||||.+|+++|..|++.|.+|+++.+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999987643
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.051 Score=44.49 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|+|+|+|..|...|..|++.|.+|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999863
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.039 Score=45.53 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEE
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST 203 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~ 203 (433)
+.++++|+|||||..|...+..|.+.+.+|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 5679999999999999999999999999999985
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.057 Score=53.72 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=36.0
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
|++.....+|.|||+|..|...|..|+..|++|+++|+...
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 55555667899999999999999999999999999998753
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.053 Score=53.40 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|+|||+|..|+++|..|++.|.+|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34789999999999999999999999999999864
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.051 Score=53.03 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
...+++|+|||+|+.|...|..|++.+..|+++.|.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 3457899999999999999999999999999988765
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.066 Score=44.14 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEM 38 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~ 38 (433)
...+|+|||||..|..-+..|.+.|.+|+|+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 357899999999999999999999999999964
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.038 Score=43.77 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..++++||.| .|...|..|++.|.+|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3679999999 999899999999999999997664
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.058 Score=44.20 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+.||+++|+|=|..|--+|..|...|.+|++....|
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4579999999999999999999999999999998776
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.51 Score=39.33 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=29.7
Q ss_pred eEEEEcC-CCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~-G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|.|||+ |..|..++.++.++|.+||.+.|++.
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChH
Confidence 5788885 99999999999999999999999863
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.045 Score=52.28 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.++++|||||.+|++.|.+|++.|-+|+++.+++.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 57899999999999999999999999999999874
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.075 Score=48.98 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|..|...|..|++.|++|+++|+..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999999864
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.049 Score=47.13 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.+++|+|||||.+|.--+..|.+.|.+|+++...
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 356899999999999999999999999999998754
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.11 Score=41.75 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~ 40 (433)
+..+++|||||-+|-+++.+|.+.|.+ ++++.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457999999999999999999999996 99999863
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.087 Score=45.51 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
..++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999864
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.072 Score=49.62 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|.|||+|..|...|..|++.|++|+++|+..
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 45689999999999999999999999999999754
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.057 Score=43.32 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
..+|+|||+|..|..+|..|.+.|+ +++++|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999999 799999753
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.15 Score=46.53 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=66.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+-+-+|||||+.+|.||-.|.-.|++|+|.=|+--+- +| .+
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr-------------------------------------GF--Dq 238 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR-------------------------------------GF--DQ 238 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc-------------------------------------cc--cH
Confidence 4578999999999999999999999999988753220 11 25
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEcc-----CcEEEeCEEEEccCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN-----GKKKKYDFIAVCNGA 142 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~-----g~~~~~d~vIvAtG~ 142 (433)
++.+.+....+..|+. +.-.+..+.|+.. ++...|...+ +....||.|+.|.|.
T Consensus 239 dmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 239 DMAELVAEHMEERGIK--FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred HHHHHHHHHHHHhCCc--eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhcc
Confidence 6777777777777873 4445455666654 4555554332 224679999999997
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.047 Score=52.62 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=30.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|+|||||.+|+++|..|++.|.+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999998764
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.057 Score=46.64 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.+++|+|||+|..|.-.+..|.+.+.+|+++.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 457899999999999999999999999999998753
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.15 Score=50.33 Aligned_cols=36 Identities=36% Similarity=0.475 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+++|+++|+|+|.+|+.+|..|++.|.+|+++.+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468999999999999999999999999999988754
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.077 Score=48.77 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+|+|||+|..|.+.|..|++.|.+|+++|+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 589999999999999999999999999999764
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.076 Score=48.84 Aligned_cols=34 Identities=21% Similarity=0.489 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+|+|||+|..|...|..|++.|++|+++|+.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4799999999999999999999999999998653
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.072 Score=51.66 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|+|||.|..|+..|..|++.|++|+++|+.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6899999999999999999999999999998654
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.086 Score=48.34 Aligned_cols=34 Identities=18% Similarity=0.418 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+|+|||+|..|...|..|++.|++|+++|..+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 5799999999999999999999999999997653
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.1 Score=49.05 Aligned_cols=35 Identities=14% Similarity=0.395 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|.|||+|.-|...|..|.+.|++|+++++..
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 45689999999999999999999999999999864
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.11 Score=48.06 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...+|.|||+|..|...|..|+..|++|+++|+..
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 34679999999999999999999999999999865
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.1 Score=48.38 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||+|..|...|..|.+.|.+|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999863
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.1 Score=49.70 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...+|+|||+|..|+.++..|...|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999999864
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.094 Score=48.33 Aligned_cols=34 Identities=12% Similarity=0.435 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+|+|||+|..|...|..|+..|++|+++|+.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998653
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.15 Score=47.44 Aligned_cols=37 Identities=19% Similarity=0.431 Sum_probs=32.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
+....+|+|||+|..|.++|..|...++ ++.++|...
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4556799999999999999999999888 799999754
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.12 Score=43.10 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=29.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|++|.+||-|..|...|..|.+.|++|.++|+.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 4689999999999999999999999999999864
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.11 Score=41.68 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCc-EEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~ 206 (433)
.+++++++|+|+|.+|--++..|...|.+ |+++.|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 56799999999999999999999998754 99998864
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.11 Score=48.24 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||+|..|...|..|.+.|.+|+++++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999853
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.16 Score=47.39 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=33.5
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
|+| -+..+|+|||||..|.++|..++..|+ +++++|..+.
T Consensus 1 ~~~-~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 1 MTM-IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCC-CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 554 234799999999999999999999896 8999998654
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.11 Score=48.12 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEcc
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEM 38 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~ 38 (433)
+|+|||+|..|...|..|.+.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.1 Score=51.51 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...+|+|||+|+.|+.++..++..|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999999999999999999999999999865
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.13 Score=48.68 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
++|+|||+|..|...|..|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 47999999999999999999999999999975
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.16 Score=43.75 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEME 39 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~ 39 (433)
..+|+|||+|--|..+|..|++.|+ +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4789999999999999999999999 69999975
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.11 Score=41.59 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|+|||+.+.+.+.-+...|++|+++|.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998754
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.51 Score=37.95 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCCCC-HHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~s-g~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+++||+++|+|.+.+ |.-++..|.+.+..|++++++.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t 62 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT 62 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 678999999997654 8888888888899999887543
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >KOG4405|consensus | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.14 Score=47.93 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=41.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
+..+||+|||-|..=-..|.++.+.|.+|.=+|++...||.|...
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSf 50 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASF 50 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccce
Confidence 356899999999999999999999999999999999999999875
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.16 Score=47.66 Aligned_cols=33 Identities=21% Similarity=0.503 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.|||+|..|...|..|++.|.+|+++++.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999864
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.15 Score=48.94 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|+|+|+.|+.+|..++..|.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4689999999999999999999999999999764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.43 Score=43.21 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCC-CCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G-~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.||+|+|||.| ..|.-+|..|...+..|++++..
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~ 190 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL 190 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence 6779999999999 88999999999999999988643
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.17 Score=49.77 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=30.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
....++|+|+|.|-+|.++|+.|.+ |.+|++.|..
T Consensus 3 ~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 3 SHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3445789999999999999999995 9999999954
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.12 Score=50.30 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++|+|||+|.+|+-+|..|++.|.+|+++.|+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 379999999999999999999999999999875
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.16 Score=49.27 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=38.1
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhcc-C-CcEEEEEecC
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRG 206 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~-~-~~V~~~~r~~ 206 (433)
....+..++.....+.-.|+|||+|.+|+-+|.+|++. + ++|+++.|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 15 HRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 34445556666544456799999999999999999985 7 5899999864
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.15 Score=50.14 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~ 41 (433)
++|+|||+|..|+.+|..|++.| ++|+.+|....
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 57999999999999999999984 78999997653
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.38 Score=43.61 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCCC-HHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~s-g~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.||+++|||.|.+ |.-+|..|...+..|++++++
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~ 191 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK 191 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC
Confidence 567999999999988 999999999999999987754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 433 | ||||
| 4a9w_A | 357 | Flavin-Containing Monooxygenase From Stenotrophomon | 8e-15 | ||
| 2xvi_A | 464 | Crystal Structure Of The Mutant Bacterial Flavin Co | 2e-11 | ||
| 3uov_A | 545 | Crystal Structure Of Otemo (Fad Bound Form 1) Lengt | 4e-11 | ||
| 2xve_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 5e-11 | ||
| 2xlp_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 8e-11 | ||
| 2xvf_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 8e-11 | ||
| 2xls_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 9e-11 | ||
| 2xlr_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 1e-10 | ||
| 2vq7_A | 461 | Bacterial Flavin-Containing Monooxygenase In Comple | 1e-10 | ||
| 3gwd_A | 540 | Closed Crystal Structure Of Cyclohexanone Monooxyge | 1e-09 | ||
| 3ucl_A | 573 | Cyclohexanone-Bound Crystal Structure Of Cyclohexan | 2e-09 | ||
| 2gv8_A | 447 | Crystal Structure Of Flavin-Containing Monooxygenas | 3e-08 | ||
| 1vqw_A | 457 | Crystal Structure Of A Protein With Similarity To F | 3e-08 | ||
| 2ylx_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 1e-07 | ||
| 2ylw_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 2e-07 | ||
| 1w4x_A | 542 | Phenylacetone Monooxygenase, A Baeyer-villiger Mono | 2e-07 | ||
| 2ylz_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 2e-07 | ||
| 4ap3_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 2e-05 | ||
| 4ap1_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 2e-05 | ||
| 4aos_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 2e-05 |
| >pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357 | Back alignment and structure |
|
| >pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464 | Back alignment and structure |
|
| >pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545 | Back alignment and structure |
|
| >pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461 | Back alignment and structure |
|
| >pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540 | Back alignment and structure |
|
| >pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573 | Back alignment and structure |
|
| >pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447 | Back alignment and structure |
|
| >pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457 | Back alignment and structure |
|
| >pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542 | Back alignment and structure |
|
| >pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542 | Back alignment and structure |
|
| >pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542 | Back alignment and structure |
|
| >pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542 | Back alignment and structure |
|
| >pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 2e-92
Identities = 75/379 (19%), Positives = 135/379 (35%), Gaps = 39/379 (10%)
Query: 11 CIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQV 70
+IGGG G+ G L ++Y + + E+ GG W + SLHL SP + +
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ------HAWHSLHLFSPAGWSSI 60
Query: 71 PDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKK 130
P +PMP + YP + +L YL Y +K+ + V + + + V +G++
Sbjct: 61 PGWPMPASQGPYPARAEVLAYLAQYEQKYALPVL--RPIRVQRVSHFGERLRVVARDGRQ 118
Query: 131 KKYDFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDI 188
+ G A P Y G F+G LHS Y +P RV ++G GNSG I
Sbjct: 119 WLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQI 178
Query: 189 AVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAG 248
+ S +E + + DG+ + +
Sbjct: 179 LAEVSTVAETTWITQHEPAFLADDV-DGRVLFERATER---------------------- 215
Query: 249 FDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVD 308
+ G + P +M +L G + + + + D T D
Sbjct: 216 WKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFD 275
Query: 309 TIIYATGYNRHFPFIDKEKLEWKLG-IPDLFIHIAPRNLDNIFFFGFVN----AAAGLGD 363
+I+ TG+ + L G + + + +++ G+ + A+A L
Sbjct: 276 AVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLI- 334
Query: 364 GLRLQGQFIRSYIQAFIRK 382
G+ + + A+
Sbjct: 335 GVTRYAREAVRQVTAYCAD 353
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-52
Identities = 61/389 (15%), Positives = 114/389 (29%), Gaps = 101/389 (25%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYD--LYEMESDLGGVWN------------------- 47
K+ IIG GP G+ + L L+E GGVWN
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 67
Query: 48 ---------SQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 98
+Y L +P D +P+ + +Y R YA+
Sbjct: 68 TEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQP 127
Query: 99 FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKK------YDFIAVCNGAQRVARYPNYS 152
+ T+V+++E+ + W V K +D +++CNG V PN
Sbjct: 128 LLPFIK--LATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIK 185
Query: 153 G------YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206
G G +LHS ++ P+ + VLVVG +S D+ + ++ + + G
Sbjct: 186 GLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 245
Query: 207 YHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAA 266
+ + Q + I + + +
Sbjct: 246 GGDIQ--------NESLQQ-----------VPEITKFD----------PTTREIYLKGGK 276
Query: 267 HPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE 326
+++Y G+ +P F ++ +
Sbjct: 277 VLSNIDRVIYCTGYLYSVP-------------FPSLAKLKSPETKLIDDGSH-------- 315
Query: 327 KLEWKLGIPDLFIHIAPRNLDNIFFFGFV 355
+ +++ HI + F G
Sbjct: 316 -------VHNVYQHIFYIPDPTLAFVGLA 337
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 8e-45
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 29/236 (12%)
Query: 9 KLCIIGGGPLGIGLGRELSE------GNINYDLYEMESDLGGVWN----------SQASC 52
++ I+G GP G+ R +E ++D GG WN +
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 63
Query: 53 GRVYPSLHLISPKFNTQVPDYPMPDNY----PVYPNHSMMLDYLRSYAKKFDVYNHSIFN 108
+Y L PK + DY +++ YP ++ DY++ +K V + FN
Sbjct: 64 SSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123
Query: 109 TEVINLEQYED--IWEVELSNGKKKK-----YDFIAVCNGAQRVARYPNYSGY--FSGEI 159
T V ++E ED + V + + +D++ C G P + G+ F G I
Sbjct: 124 TAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRI 183
Query: 160 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFID 215
LH+ D++ + ++K VL+VG+ S DI + K S R K+ +
Sbjct: 184 LHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPE 239
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-38
Identities = 60/387 (15%), Positives = 110/387 (28%), Gaps = 71/387 (18%)
Query: 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYP-SLHLISP 64
++ K+ IIG G GIG+ L + I + + +G + + +P S I+P
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSF-------KHWPKSTRTITP 55
Query: 65 KFNTQVP-----------DYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 113
F + P + + +YL+ A +++ + NT V N
Sbjct: 56 SFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYEL--NIFENTVVTN 113
Query: 114 LEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRN 173
+ + + + + D+I V G + P G +H + + D
Sbjct: 114 ISADDAYYTIATTTETYH-ADYIFVATGDYNFPKKPFKYG------IHYSEIEDFDNFNK 166
Query: 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 233
+ +V+G SG D A + + + T P + Q
Sbjct: 167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNV--- 223
Query: 234 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN 293
+ G + + I + YHI
Sbjct: 224 ------------------IKQGARIEMNVHYTVKDIDFNNGQYHISFDS----------- 254
Query: 294 GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFG 353
+ I ATG++ I ++ L H NIF G
Sbjct: 255 -------GQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIG 307
Query: 354 FV----NAAAGLGDGLRLQGQFIRSYI 376
NA R + + +
Sbjct: 308 ATVENDNAKLCYIYKFRARFAVLAHLL 334
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 71/406 (17%), Positives = 127/406 (31%), Gaps = 64/406 (15%)
Query: 12 IIGGGPLGIGLGRELSE-----GNINYDLYEMESDLG---GVWNSQASC--GRVYPSLHL 61
+G GP I L L E G + + + D SQ+ + + L
Sbjct: 35 GVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSL 94
Query: 62 ISPK--------FNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 113
+P + + YP DYLR A F S + EV+
Sbjct: 95 RNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQ--EQSRYGEEVLR 152
Query: 114 LEQYEDIWEVEL-------SNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMD 164
+E +VE ++G++ A+ R P G + H
Sbjct: 153 IEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQ 212
Query: 165 Y------KSPDQIRNKRVLVVGAGNSGCDIAVD--ASHHSEKVYHSTRRGYHYYP----K 212
Y + + ++ ++G G S + +D S+ S + R P
Sbjct: 213 YLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRA-SALKPADDSP 271
Query: 213 FIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNS 272
F++ P++ + +S + + + + + VD L ++ + +
Sbjct: 272 FVNEVFAPKFTDLI---YSREHAERERLLREYHNTNYSVVDTDL------IERIYGVFYR 322
Query: 273 QILYHIGHGDILPKDDIKNL----NGNIVHFVD-----DTHIEVDTIIYATGYNRHFP-- 321
Q + I ++ G + D + D +I ATGY R
Sbjct: 323 QKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQ 382
Query: 322 FID--KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGL 365
++ E L D + R I+ GF A+ GL D L
Sbjct: 383 LLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTL 428
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 3e-20
Identities = 64/251 (25%), Positives = 86/251 (34%), Gaps = 58/251 (23%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW--NSQASCGRVYPSLHLISPKFNTQ 69
+IG G GI +++ + E D+GG W N YP +T+
Sbjct: 14 VIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNR-------YPGCR-----LDTE 61
Query: 70 VPDYPMPDNYPVYPNHSM---------MLDYLRSYAKKFDVYNHSIFNTEVINLEQYED- 119
Y + P ML Y+ A DV H FNT V Y +
Sbjct: 62 SYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAAR-YVEN 120
Query: 120 --IWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSGEILHS----MDYKSPDQ- 170
+WEV L N + F+ G +R P+ G F GE HS D + +
Sbjct: 121 DRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKG 180
Query: 171 --IRNKRVLVVGAGNSG----CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML 224
KRV V+G G +G A A +Y R TP W
Sbjct: 181 VDFTGKRVGVIGTGATGVQIIPIAAETAKE----LYVFQR--------------TPNWCT 222
Query: 225 QLGNKFSSKEE 235
LGN SKE+
Sbjct: 223 PLGNSPMSKEK 233
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 7e-20
Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 48/243 (19%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW--NSQASCGRVYPSL------HLIS 63
++G G G+ L E + + E D+GGVW N YP
Sbjct: 21 VVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR-------YPGARCDIESIEYC 73
Query: 64 PKFNTQVPDYPMPDNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE--QYEDI 120
F+ + N+ Y + +L Y+ A KFD+ + F+T V + +
Sbjct: 74 YSFS---EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNT 130
Query: 121 WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSGEILHSM--DYKSPDQIRNKRV 176
W V+ ++G + + ++ + +G V + PN+ G F+G + H+ ++ D +RV
Sbjct: 131 WTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVD-FSGQRV 189
Query: 177 LVVGAGNSG----CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232
V+G G+SG IA A+ ++ R TP + + N
Sbjct: 190 GVIGTGSSGIQVSPQIAKQAAE----LFVFQR--------------TPHFAVPARNAPLD 231
Query: 233 KEE 235
E
Sbjct: 232 PEF 234
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 9e-20
Identities = 53/249 (21%), Positives = 83/249 (33%), Gaps = 52/249 (20%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW--NSQASCGRVYPSLHLISPKFNTQ 69
++G G G+ + +E S +GGVW N YP + +
Sbjct: 26 VVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR-------YPGAR-----CDVE 73
Query: 70 VPDY-----PMPDNYPV----YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE--QYE 118
DY P + Y +L YL A +FD+ F+T V + +
Sbjct: 74 SIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEG 133
Query: 119 DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSGEILHSM--DYKSPDQIRNK 174
W V G + F+ V G A P + G F+G+I+H+ + D K
Sbjct: 134 LRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVD-FTGK 192
Query: 175 RVLVVGAGNSGC----DIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230
RV V+G G+SG IA A ++ R + + + GN
Sbjct: 193 RVGVIGTGSSGIQSIPIIAEQAEQ----LFVFQR--------------SANYSIPAGNVP 234
Query: 231 SSKEETMAY 239
Sbjct: 235 LDDATRAEQ 243
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 6e-19
Identities = 56/245 (22%), Positives = 93/245 (37%), Gaps = 52/245 (21%)
Query: 12 IIGGGPLGIGLGREL-SEGNINYDLYEMESDLGGVW--NSQASCGRVYPSL------HLI 62
+IG G GI +L E + ++ GG W N YP HL
Sbjct: 13 VIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNR-------YPGALSDTESHLY 65
Query: 63 SPKF---NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE--QY 117
F Q + Y +L+YL +FD+ H F TEV +
Sbjct: 66 RFSFDRDLLQESTWKT-----TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD 120
Query: 118 EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSGEILHSMDY-KSPDQIRNK 174
E++WEV +G+ + ++ G +PN G F GE +H+ + + + +
Sbjct: 121 ENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKS-LAGR 179
Query: 175 RVLVVGAGNSG----CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230
RV V+G G++G +A + H + R TPQ+ + +GN+
Sbjct: 180 RVGVIGTGSTGQQVITSLAPEVEH----LTVFVR--------------TPQYSVPVGNRP 221
Query: 231 SSKEE 235
+ E+
Sbjct: 222 VNPEQ 226
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 63/361 (17%), Positives = 125/361 (34%), Gaps = 90/361 (24%)
Query: 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ 69
L IIGGGP GI + NI+ + E LGG Q +YP
Sbjct: 17 LTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG----Q--LAALYP---------EKH 61
Query: 70 VPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNG 128
+ D +P P ++ + L + A++++ N V + +D +E + G
Sbjct: 62 IYDVA---GFPEVPAIDLV-ESLWAQAERYNPDVV--LNETVTKYTKLDDGTFETRTNTG 115
Query: 129 KK--KKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDY--KSPDQIRNKRVLVVGAG 182
+ IA GA + P + +G ++ Y KS + + KRV++VG G
Sbjct: 116 NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVY---YAVKSVEDFKGKRVVIVGGG 172
Query: 183 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242
+S D V ++ V R ++F +T +
Sbjct: 173 DSALDWTVGLIKNAASVTLVHRG----------------------HEFQGHGKT---AHE 207
Query: 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDD 302
V + +D + +++ +L + +++ +G+
Sbjct: 208 VERARANGTIDV--------------YLETEVASIEESNGVLTRVHLRSSDGSK------ 247
Query: 303 THIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPR---NLDNIFFFGFVNAAA 359
+E D ++ G+ + + W L + + + + ++D ++ AA
Sbjct: 248 WTVEADRLLILIGFKSNLGPL----ARWDLELYENALVVDSHMKTSVDGLY-------AA 296
Query: 360 G 360
G
Sbjct: 297 G 297
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 35/204 (17%)
Query: 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ 69
+ I+G GP G+ G + +++ + + GG Q +YP K
Sbjct: 8 VLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG----Q--LTALYPE------K---- 51
Query: 70 VPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN 127
Y + +P ++ L F+ LE+ D+++V S
Sbjct: 52 -YIY----DVAGFPKVYAKDLVKGLVEQVAPFNPVYS--LGERAETLEREGDLFKVTTSQ 104
Query: 128 GKK--KKYDFIAVCNGA--QRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGN 183
G K IA GA R P + + +++ KS + + KRVL+VG G+
Sbjct: 105 GNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAV--KSKAEFQGKRVLIVGGGD 162
Query: 184 SGCDIAVDASHHSEKVY--HSTRR 205
S D A++ + ++ H RR
Sbjct: 163 SAVDWALNLLDTARRITLIH--RR 184
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 47/213 (22%), Positives = 77/213 (36%), Gaps = 35/213 (16%)
Query: 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLH 60
M+ K + IIGGGP+G+ + + E LGG Q +YP
Sbjct: 1 MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGG----Q--LSALYP--- 51
Query: 61 LISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI 120
+ D +P ++ + L+ KFD V ++E+ D
Sbjct: 52 ------EKYIYDVA---GFPKIRAQELI-NNLKEQMAKFDQTIC--LEQAVESVEKQADG 99
Query: 121 WEVELSNGKKK--KYDFIAVCNGAQRVARYPNYSGY--FSGEILHSMDY--KSPDQIRNK 174
++N + K I NGA R + G+ LH Y + +
Sbjct: 100 VFKLVTNEETHYSKTVIITAGNGA-FKPRKLELENAEQYEGKNLH---YFVDDLQKFAGR 155
Query: 175 RVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 205
RV ++G G+S D A+ +++V H RR
Sbjct: 156 RVAILGGGDSAVDWALMLEPIAKEVSIIH--RR 186
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 50/313 (15%), Positives = 94/313 (30%), Gaps = 66/313 (21%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT 68
L ++G GP G+ + L++ S++GG +N
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK------------------ 416
Query: 69 QVPDYP-MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN 127
Q+P + L Y R + V N V + +
Sbjct: 417 QIPGKEEFYE----------TLRYYRRMIEVTGVTLK--LNHTV----TADQL------- 453
Query: 128 GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCD 187
+ +D + +G V R P G ++L +D +V ++G G G D
Sbjct: 454 ---QAFDETILASGI--VPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFD 508
Query: 188 IAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLA 247
A+ S E + F + + Q G + +Q+ L
Sbjct: 509 TAMYLSQPGESTSQNI-------AGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQ 561
Query: 248 GFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPKDDIKNLNGNIVHFVDDTH-- 304
KP L ++ L G ++P + ++ + +H V +
Sbjct: 562 RKAS------KPGQGLGKTTGWIHRTTLLS--RGVKMIPGVSYQKIDDDGLHVVINGETQ 613
Query: 305 -IEVDTIIYATGY 316
+ VD ++ G
Sbjct: 614 VLAVDNVVICAGQ 626
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 48/396 (12%), Positives = 107/396 (27%), Gaps = 107/396 (27%)
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYD-FIAVCN 140
Y ++ + ++ FD + +++ E+ + I + + F + +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLS 73
Query: 141 -GAQRVARY------PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS 193
+ V ++ NY F + + + + P +
Sbjct: 74 KQEEMVQKFVEEVLRINYK--FLMSPIKT-EQRQPSMMT--------------------- 109
Query: 194 HHSEKVYHSTR-RGYHYYPKFIDGK-PTPQWMLQLGNKFSSKEETMAYI---------KQ 242
++Y R R Y+ F Q L+L + + K
Sbjct: 110 ----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKT 164
Query: 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY-HIGHGDILPKDDIKNLNGNIVHFVD 301
+A + Y ++ M+ +I + ++ + + P+ ++ L +++ +D
Sbjct: 165 W--VALDVCLSYKVQC----------KMDFKIFWLNLKNCNS-PETVLEMLQ-KLLYQID 210
Query: 302 DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRN----LDNI-------- 349
H + + L N L N+
Sbjct: 211 PNWTSRSDHSSNIKLRIH---------SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 350 FFFG----FVNAAAGLGDGLRLQGQFIRSYIQAFI----RKSKGYL-KFLNAKKNDNPDL 400
F + D L S + + K L K+L+ + D P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 401 GQDY----------FIDSHRHLWEVDFWKFIKCARM 426
I W D WK + C ++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKL 355
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 41/146 (28%)
Query: 77 DNYPVYPNHS---MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQYEDIWEVELSNGKKKK 132
+NY P + L+ + ++DV S +++I + ++E ++G K
Sbjct: 45 ENYISVPKTEGQKLAGA-LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLK 103
Query: 133 YDFIAVCNGAQRVARYPN------YSG------------YFSGEILHSMDYKSPDQIRNK 174
I V GA+ R N Y F + K
Sbjct: 104 ARSIIVATGAK--WRNMNVPGEDQYRTKGVTYCPHCDGPLF----------------KGK 145
Query: 175 RVLVVGAGNSGCDIAVDASHHSEKVY 200
RV V+G GNSG + A+D + E V
Sbjct: 146 RVAVIGGGNSGVEAAIDLAGIVEHVT 171
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 39/158 (24%)
Query: 69 QVPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQYEDIWEVEL 125
QV D +NY P + L+++ +DV S ++++ + ++E
Sbjct: 248 QVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIET 307
Query: 126 SNGKKKKYDFIAVCNGAQRVARYPN------YSGY------------FSGEILHSMDYKS 167
++G K I + GA+ R N Y F
Sbjct: 308 ASGAVLKARSIIIATGAK--WRNMNVPGEDQYRTKGVTYCPHCDGPLF------------ 353
Query: 168 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
+ KRV V+G GNSG + A+D + E V
Sbjct: 354 ----KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 387
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 9e-04
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 41/152 (26%)
Query: 77 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 127
+N+P +P + + D R +++F T + E + +V+ S+
Sbjct: 58 ENFPGFPEGILGVELTDKFRKQSERF--------GTTIF----TETVTKVDFSSKPFKLF 105
Query: 128 GKKKKY--DFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKS------------PDQIRN 173
K D + + GA A+ + F G + + RN
Sbjct: 106 TDSKAILADAVILAIGAV--AKRLS----FVGSGEVLGGFWNRGISACAVCDGAAPIFRN 159
Query: 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
K + V+G G+S + A + + KVY RR
Sbjct: 160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 433 | |||
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 100.0 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 100.0 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 100.0 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.98 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 99.98 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 99.98 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 99.98 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.98 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.98 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.98 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.98 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 99.98 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.98 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.98 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.97 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.97 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.97 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.97 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.97 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.97 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.97 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.97 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.97 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.97 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 99.97 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.97 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.97 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.97 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.97 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.97 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.97 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.97 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.97 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.97 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.97 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.97 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.97 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.97 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.97 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.97 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.97 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.97 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.97 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.97 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.97 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.97 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.97 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 99.97 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.96 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.96 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.96 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.96 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.95 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.95 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.95 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.94 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.94 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.94 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.94 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.93 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.93 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.92 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.92 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.91 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.65 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.62 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.6 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.56 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.49 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.47 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.42 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 99.38 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 99.37 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 99.35 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 99.35 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 99.35 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 99.35 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 99.34 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 99.32 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 99.31 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 99.3 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.3 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 99.3 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 99.3 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 99.29 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.29 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 99.28 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 99.28 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 99.27 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 99.25 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 99.23 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 99.21 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 99.21 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.21 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 99.2 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.2 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.19 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 99.18 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 99.18 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 99.18 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 99.17 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 99.17 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.16 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 99.15 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 99.14 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 99.14 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 99.13 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 99.12 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 99.1 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.1 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 99.09 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 99.08 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.06 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 99.06 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 99.05 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 99.03 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 99.0 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.99 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 98.97 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.96 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.96 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.95 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.94 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.94 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.92 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.92 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.91 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.91 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.9 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.89 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.87 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.86 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.85 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.85 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.85 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.85 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.84 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.81 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.79 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.78 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.77 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 98.76 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.75 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.74 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.73 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.71 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.7 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.7 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.7 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.7 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.69 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.69 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.68 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.67 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.67 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.66 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.66 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.66 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.66 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.66 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.65 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.65 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.65 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.64 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.64 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 98.64 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.64 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 98.64 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.63 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.63 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.63 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.63 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.62 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.62 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.61 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.6 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.6 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.59 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.59 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.58 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 98.58 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.56 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.56 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.55 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 98.53 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 98.52 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 98.51 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.48 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.47 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.44 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 98.43 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.43 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.43 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.42 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.42 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.41 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.41 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 98.41 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.38 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 98.37 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.37 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 98.33 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 98.33 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.32 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.29 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 98.27 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 98.27 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 98.23 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 98.22 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.2 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 98.19 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 98.17 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 98.16 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 98.16 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 98.16 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.16 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 98.15 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.14 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.13 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 98.13 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.12 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.12 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 98.11 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.09 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.08 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.07 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.06 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 98.06 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 98.06 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.03 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 98.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 97.99 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 97.99 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.97 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 97.96 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.96 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 97.95 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.94 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 97.92 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 97.89 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.87 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 97.86 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.86 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 97.86 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 97.84 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.8 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.77 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 97.76 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.74 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.74 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.72 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.63 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 97.62 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 97.55 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.54 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.48 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 97.48 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 97.47 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.43 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 97.4 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 97.34 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 97.34 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 97.3 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.29 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.28 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 97.27 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.25 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.23 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.19 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 97.17 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 97.17 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.15 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 97.08 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 97.02 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 97.01 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.99 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 96.93 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 96.92 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.84 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.82 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 96.8 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.79 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.77 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 96.75 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.73 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.73 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.64 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.62 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.62 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.59 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 96.57 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 96.53 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 96.39 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.32 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 96.23 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 96.12 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 96.05 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.02 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.99 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 95.95 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 95.94 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.92 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 95.91 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 95.88 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.76 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 95.73 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 95.68 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 95.58 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 95.54 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.21 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 95.21 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.2 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 95.19 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 95.12 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.04 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.95 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.88 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 94.86 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 94.8 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.8 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 94.66 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 94.61 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 94.58 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.58 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 94.45 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 94.44 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.41 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 94.4 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 94.28 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 94.28 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 94.24 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.19 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.19 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.1 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 94.09 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 94.06 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 94.06 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 94.05 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 94.02 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.0 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.99 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 93.99 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 93.95 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 93.9 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 93.89 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.78 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 93.77 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 93.77 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 93.73 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 93.71 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 93.67 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 93.67 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 93.61 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 93.58 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 93.57 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 93.43 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 93.43 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 93.36 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 93.35 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 93.32 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 93.3 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 93.27 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 93.27 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 93.24 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 93.19 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 93.16 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 93.14 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 93.1 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 93.1 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 93.1 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 93.1 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 92.99 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 92.98 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 92.97 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 92.97 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 92.94 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 92.92 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 92.91 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 92.88 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 92.88 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 92.87 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 92.86 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 92.85 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 92.79 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 92.74 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 92.68 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 92.67 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 92.66 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 92.59 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 92.58 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 92.55 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 92.55 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 92.53 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 92.52 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 92.51 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 92.44 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 92.42 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.39 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 92.37 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 92.31 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 92.31 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 92.27 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 92.26 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 92.23 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 92.15 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 92.07 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 92.04 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 92.04 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 92.02 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 91.99 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 91.93 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 91.9 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 91.85 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 91.79 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 91.7 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 91.69 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 91.66 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 91.62 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 91.58 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 91.58 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 91.58 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.57 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 91.57 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 91.55 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 91.54 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 91.51 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 91.5 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 91.47 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 91.45 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 91.43 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 91.43 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 91.42 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 91.42 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 91.41 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 91.4 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 91.36 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 91.35 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 91.35 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 91.33 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 91.29 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 91.19 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 91.19 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 91.17 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 91.16 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 91.09 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 91.08 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 91.08 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 91.05 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 91.04 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 90.98 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 90.97 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 90.91 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 90.9 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 90.88 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 90.85 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 90.83 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 90.8 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 90.79 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 90.73 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 90.71 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 90.7 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 90.69 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 90.66 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 90.62 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 90.61 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 90.58 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 90.56 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 90.55 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 90.53 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 90.5 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 90.47 |
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-53 Score=415.94 Aligned_cols=351 Identities=23% Similarity=0.369 Sum_probs=288.8
Q ss_pred CcEEEECCChHHHHHHHHHHh---cCCC---eEEEccCCCCCCcccCCCC----------CCccccceEeecCCCcccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSE---GNIN---YDLYEMESDLGGVWNSQAS----------CGRVYPSLHLISPKFNTQVP 71 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~---~g~~---v~v~e~~~~~Gg~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 71 (433)
+||+|||||++|+++|..|++ .|++ |+|||+.+.+||+|.+... .+.+|+.+..+.++..+.|+
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 699999999999999999999 9999 9999999999999997532 24578888888888888888
Q ss_pred CCCCCCC----CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC--eEEEEEcc---C--cEEEeCEEEEcc
Q psy2398 72 DYPMPDN----YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSN---G--KKKKYDFIAVCN 140 (433)
Q Consensus 72 ~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~--~~~v~~~~---g--~~~~~d~vIvAt 140 (433)
+++++.. .+.++++.++.+|++++++++++..+++++++|+.|+.+++ .|.|++.+ | .++.||+||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 8776532 25688899999999999999998666999999999998754 89999865 3 468999999999
Q ss_pred CCCCCCCCCCCCC--CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCC
Q psy2398 141 GAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKP 218 (433)
Q Consensus 141 G~~s~p~~p~i~g--~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~ 218 (433)
|+++.|+.|+++| .|.+.++|+..++++..+.+|+|+|||+|.||+|+|.+|++.+++|+++.|++... +.
T Consensus 163 G~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~-~~------ 235 (464)
T 2xve_A 163 GHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM-GY------ 235 (464)
T ss_dssp CSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC-CC------
T ss_pred CCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC-CC------
Confidence 9988999999999 67888999999998888899999999999999999999999999999999876310 10
Q ss_pred hhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEE
Q psy2398 219 TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVH 298 (433)
Q Consensus 219 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~ 298 (433)
.+ ..+|.+.+.|+++++.+|+
T Consensus 236 ----------~~-------------------------------------------------~~~V~~~~~V~~i~~~~V~ 256 (464)
T 2xve_A 236 ----------KW-------------------------------------------------PENWDERPNLVRVDTENAY 256 (464)
T ss_dssp ----------CC-------------------------------------------------CTTEEECSCEEEECSSEEE
T ss_pred ----------CC-------------------------------------------------CCceEEcCCeEEEeCCEEE
Confidence 00 0156666788899888999
Q ss_pred ecCCceeeccEEEEccCCCCCCCCCCcc-cccccCC-cc-ccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 299 FVDDTHIEVDTIIYATGYNRHFPFIDKE-KLEWKLG-IP-DLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 299 ~~dG~~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~-~~-~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
+.||+++++|.||+||||+|+++||+.+ .+..+++ .+ .+|+++++++.|+|||+||+.. +..++.++.||+++|++
T Consensus 257 ~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v~~~~~~~~~t~~p~i~aiGd~~~-~~~~~~a~~qa~~~a~~ 335 (464)
T 2xve_A 257 FADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQ-WYSFNMFDAQAWYARDV 335 (464)
T ss_dssp ETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCCSSEETTTEESSSTTEEECSCSCC-SSCHHHHHHHHHHHHHH
T ss_pred ECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcccccccceEecCCCCCEEEEeCccc-ccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999853 4444444 44 7888888999999999999876 46789999999999999
Q ss_pred HhhhhcCCCcchhHHHHhhcCCCccC-CCccccCCCceeeeeHHHHHHHHHHhhccc
Q psy2398 376 IQAFIRKSKGYLKFLNAKKNDNPDLG-QDYFIDSHRHLWEVDFWKFIKCARMYRDML 431 (433)
Q Consensus 376 i~g~~~lp~~~~~~~~m~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 431 (433)
|.|+.+||+. ++|.+++++... ...|....++.. . .+.|+|+|++++|+.
T Consensus 336 l~G~~~lP~~----~~m~~~~~~~~~~~~~~~~~~~~~~-~-~~~Y~~~l~~~~g~~ 386 (464)
T 2xve_A 336 IMGRLPLPSK----EEMKADSMAWREKELTLVTAEEMYT-Y-QGDYIQNLIDMTDYP 386 (464)
T ss_dssp HTTSSCCCCH----HHHHHHHHHHHHHHHTCCSHHHHHH-H-HHHHHHHHHTTSSSC
T ss_pred HcCCCCCcCH----HHHHHHHHHHHHHhhccCCCCCccc-c-HHHHHHHHHHHcCCC
Confidence 9999999997 899877532111 112321122210 0 368999999999985
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-51 Score=400.10 Aligned_cols=347 Identities=22% Similarity=0.339 Sum_probs=286.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCC----------------------------CCc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQAS----------------------------CGR 54 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~----------------------------~~~ 54 (433)
...+||+|||||++|+++|..|++.|. +|+|||+.+.+||.|.+... .+.
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~ 83 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP 83 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCc
Confidence 346899999999999999999999999 99999999999999988642 134
Q ss_pred cccceEeecCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---Cc--
Q psy2398 55 VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK-- 129 (433)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g~-- 129 (433)
+|..+..+.++.++.|++++++...+.++.+.++.+|+.+++++++. .++++++|+.++.+++.|.|++.+ |.
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~ 161 (447)
T 2gv8_A 84 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKKDGSWVVTYKGTKAGSPI 161 (447)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEETTEEEEEEEESSTTCCE
T ss_pred hhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhC--eEEeCCEEEEEEeCCCeEEEEEeecCCCCee
Confidence 55666666666677788888887777889999999999999998754 689999999999888899999876 65
Q ss_pred -EEEeCEEEEccCCCCCCCCCCCCC--C----CCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCc-EEE
Q psy2398 130 -KKKYDFIAVCNGAQRVARYPNYSG--Y----FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYH 201 (433)
Q Consensus 130 -~~~~d~vIvAtG~~s~p~~p~i~g--~----~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~-V~~ 201 (433)
++.||+||+|||+++.|++|+++| . +.+.++|+..++++..+.+++|+|||+|.||+|+|.+|++.+++ |++
T Consensus 162 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l 241 (447)
T 2gv8_A 162 SKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQ 241 (447)
T ss_dssp EEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEE
T ss_pred EEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEE
Confidence 789999999999999999999999 3 36789999999998888999999999999999999999999999 999
Q ss_pred EEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCC
Q psy2398 202 STRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG 281 (433)
Q Consensus 202 ~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (433)
+.|++.+ +...
T Consensus 242 ~~r~~~~---------------------------------------------------------------------l~~~ 252 (447)
T 2gv8_A 242 SLLGGGD---------------------------------------------------------------------IQNE 252 (447)
T ss_dssp ECTTCCS---------------------------------------------------------------------CBCS
T ss_pred EeCCCCc---------------------------------------------------------------------CCCC
Confidence 9987631 0112
Q ss_pred CeeecCCceee--eCCeEEecCCce-eeccEEEEccCCCCCCCC-----CCcc--cccccCC-ccccccccccCCCCcEE
Q psy2398 282 DILPKDDIKNL--NGNIVHFVDDTH-IEVDTIIYATGYNRHFPF-----IDKE--KLEWKLG-IPDLFIHIAPRNLDNIF 350 (433)
Q Consensus 282 ~v~~~~~v~~~--~~~~v~~~dG~~-~~~D~vi~atG~~~~~~~-----l~~~--~~~~~~~-~~~~~~~~~~~~~p~i~ 350 (433)
+|...+.|+++ ++.+|++.||++ +++|.||+||||+|+++| |+.. .+..++. ...+|.+++.+++|+||
T Consensus 253 ~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~ 332 (447)
T 2gv8_A 253 SLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLA 332 (447)
T ss_dssp SEEEECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEE
T ss_pred CeEEecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEE
Confidence 56666778888 456899999987 799999999999999999 8742 2222222 24678888889999999
Q ss_pred EEccccccCChhhHHHHHHHHHHHHHhhhhcCCCcchhHHHHhhcCCCc----cCCCccccCCCceee-eeHHHHHHHHH
Q psy2398 351 FFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPD----LGQDYFIDSHRHLWE-VDFWKFIKCAR 425 (433)
Q Consensus 351 ~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~m~~~~~~~----~~~~~~~~~~~~~~~-~~~~~y~~~~~ 425 (433)
|+||+... ..++.++.||+++|++|.|+.+||+. ++|++|.+++ ...++ ..|... .++..|+++|+
T Consensus 333 ~~G~~~~~-~~~~~a~~qa~~~a~~~~g~~~lp~~----~~m~~~~~~~~~~~~~~~~----~~~~~~~~~~~~y~~~l~ 403 (447)
T 2gv8_A 333 FVGLALHV-VPFPTSQAQAAFLARVWSGRLKLPSK----EEQLKWQDELMFSLSGANN----MYHSLDYPKDATYINKLH 403 (447)
T ss_dssp ESSCCBSS-CHHHHHHHHHHHHHHHHTTSSCCCCH----HHHHHHHHHHHHHHTTCGG----GTTBCTTTHHHHHHHHHH
T ss_pred EEeccccc-cCchHHHHHHHHHHHHHcCCCCCcCH----HHHHHHHHHHHHHhcCCCc----ceeecCCccHHHHHHHHH
Confidence 99999875 47899999999999999999999998 9999996432 12211 114433 46789999999
Q ss_pred Hhhccc
Q psy2398 426 MYRDML 431 (433)
Q Consensus 426 ~~~~~~ 431 (433)
+++|..
T Consensus 404 ~~~~~~ 409 (447)
T 2gv8_A 404 DWCKQA 409 (447)
T ss_dssp HHHHTC
T ss_pred HHhCcc
Confidence 999864
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-46 Score=367.10 Aligned_cols=367 Identities=20% Similarity=0.276 Sum_probs=291.7
Q ss_pred CCcEEEECCChHHHHHHHHHH-hcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCC----CCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELS-EGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYP----MPDNYPV 81 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~-~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 81 (433)
++||+|||||++|+++|..|+ +.|++|+|||+.+.+||+|..+ .|++..++.+...+.++..+ .+.+...
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~-----~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~ 82 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWN-----RYPGALSDTESHLYRFSFDRDLLQESTWKTT 82 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHC-----CCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccccc-----CCCCceecCCcceeeeccccccccCCCCccc
Confidence 479999999999999999999 8999999999999999999876 48888888777766665321 1233345
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC--CeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG 157 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~--~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g 157 (433)
++.+.++.+|+...++++++..+++++++|+.++.++ +.|+|++.+|+++.||+||+|||.++.|+.|+++| .|.+
T Consensus 83 ~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g 162 (540)
T 3gwf_A 83 YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEG 162 (540)
T ss_dssp EEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCC
Confidence 6788999999999999999977899999999999884 48999999998899999999999988999999999 6899
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhH--HhH-hhchhhc---
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ--WML-QLGNKFS--- 231 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~--~~~-~~p~~~~--- 231 (433)
..+|+..+.....+.+|+|+|||+|.||+|+|.+|++.+.+|+++.|++.|++|......+... .+. .+|....
T Consensus 163 ~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (540)
T 3gwf_A 163 ETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAK 242 (540)
T ss_dssp EEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHH
T ss_pred CEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHH
Confidence 9999999888778899999999999999999999999999999999999999998754332211 111 1111100
Q ss_pred ------------------CchHH----------------------------------HHHHHHHHHHhcCCCCcCCCCCC
Q psy2398 232 ------------------SKEET----------------------------------MAYIKQVFKLAGFDGVDYGLKKP 259 (433)
Q Consensus 232 ------------------~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 259 (433)
.+++. ..+.....+....++.....+.|
T Consensus 243 ~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P 322 (540)
T 3gwf_A 243 NSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMP 322 (540)
T ss_dssp TSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCC
T ss_pred hccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCC
Confidence 00000 01111111122233333344567
Q ss_pred CCCCCCCCCccChhhhhcccCCCeeec----CCceeeeCCeEEecCCceeeccEEEEccCCCCCCCCCCc------cccc
Q psy2398 260 DHPLDAAHPIMNSQILYHIGHGDILPK----DDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDK------EKLE 329 (433)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~------~~~~ 329 (433)
+ .+++.++.+++++.+.+..++|++. ..|+++++++|.++||+++++|+||+||||+++..++.. ++..
T Consensus 323 ~-~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~ 401 (540)
T 3gwf_A 323 K-GLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLH 401 (540)
T ss_dssp C-SCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCB
T ss_pred C-CCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCeEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCcC
Confidence 7 8899999999999999999999975 689999999999999999999999999999998644432 2221
Q ss_pred c---cCCccccccccccCCCCcEEEE-ccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 330 W---KLGIPDLFIHIAPRNLDNIFFF-GFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 330 ~---~~~~~~~~~~~~~~~~p~i~~i-G~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
. -.+.+..|.++..+++||+|++ |...+.++.+.++|.|++|+++.|...
T Consensus 402 l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~~~ 455 (540)
T 3gwf_A 402 INDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYA 455 (540)
T ss_dssp HHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 1 1256789999999999999999 766555677889999999999999644
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=359.27 Aligned_cols=368 Identities=19% Similarity=0.265 Sum_probs=287.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCC----CCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYP----MPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 81 (433)
.++||+|||||++|+++|..|++.|++|+|||+.+.+||+|..+ .|++..++.+...+.++..+ .+.+...
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~-----~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~ 94 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWN-----RYPGARCDVESIDYSYSFSPELEQEWNWSEK 94 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-----CCTTCBCSSCTTTSSCCSCHHHHHHCCCSSS
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC-----CCCCceeCCCchhcccccccccccCCCCccC
Confidence 34799999999999999999999999999999999999999866 48888888887777665331 1244456
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC--CeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG 157 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~--~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g 157 (433)
++.+.++.+|++..++++++..+++++++|+.++.++ +.|+|++.+|+++.||+||+|||.++.|+.|+++| .|.+
T Consensus 95 ~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g 174 (549)
T 4ap3_A 95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTG 174 (549)
T ss_dssp SCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCC
Confidence 7889999999999999999877899999999999874 48999999998899999999999888999999999 6889
Q ss_pred ceeccCCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhH--HhH-hhchhhcC-
Q psy2398 158 EILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ--WML-QLGNKFSS- 232 (433)
Q Consensus 158 ~~~~~~~~~-~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~--~~~-~~p~~~~~- 232 (433)
..+|+..+. +..++.+|+|+|||+|.||+|+|..|++.+++|+++.|++.|++|+.....+... .+. .+|.....
T Consensus 175 ~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (549)
T 4ap3_A 175 DIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLS 254 (549)
T ss_dssp EEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHH
T ss_pred ceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHH
Confidence 999999888 5677889999999999999999999999999999999999999998654332211 111 11111100
Q ss_pred --------------------chHHHH--------------------------------HHHHHHHHhcCCCCcCCCCCCC
Q psy2398 233 --------------------KEETMA--------------------------------YIKQVFKLAGFDGVDYGLKKPD 260 (433)
Q Consensus 233 --------------------~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~ 260 (433)
+++... +.....+....+..-.....|.
T Consensus 255 r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~ 334 (549)
T 4ap3_A 255 RESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPK 334 (549)
T ss_dssp HHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCS
T ss_pred HhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCC
Confidence 000101 1111111111222222334576
Q ss_pred -CCCCCCCCccChhhhhcccCCCeeec----CCceeeeCCeEEecCCceeeccEEEEccCCCCCCCCCCcc------ccc
Q psy2398 261 -HPLDAAHPIMNSQILYHIGHGDILPK----DDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE------KLE 329 (433)
Q Consensus 261 -~~~~~~~~~~~~~~~~~~~~~~v~~~----~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~------~~~ 329 (433)
+...+.++.+++++.+.+..++|++. ..|+++++++|.++|| ++++|+||+||||+++..++... +..
T Consensus 335 ~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~g~~G~~ 413 (549)
T 4ap3_A 335 DHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETGIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEIVGRGGRT 413 (549)
T ss_dssp SCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCEEESSTTGGGSEEECGGGCB
T ss_pred CCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCcEEeCCC-ceecCEEEECCcccccccccCceeEECCCCcC
Confidence 88899999999999999999999975 6899999999999999 99999999999999987555422 111
Q ss_pred c---cCCccccccccccCCCCcEEEEccccc---cCChhhHHHHHHHHHHHHHhhh
Q psy2398 330 W---KLGIPDLFIHIAPRNLDNIFFFGFVNA---AAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 330 ~---~~~~~~~~~~~~~~~~p~i~~iG~~~~---~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
. -.+.+..|.++..+++||+|++.-..+ .++...++|.|++|+++.|...
T Consensus 414 l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~~~ 469 (549)
T 4ap3_A 414 LKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYL 469 (549)
T ss_dssp HHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHHHH
Confidence 1 124678999999999999999855442 3467788999999999999644
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=357.49 Aligned_cols=368 Identities=22% Similarity=0.306 Sum_probs=284.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCC----CCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPM----PDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 81 (433)
..+||+|||||++|+++|..|++.|++|+|||+++.+||+|..+ +|++..+..+...+.++..+. ..+...
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~-----~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~ 82 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN-----RYPGCRLDTESYAYGYFALKGIIPEWEWSEN 82 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-----CCTTCBCSSCHHHHCHHHHTTSSTTCCCSBS
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC-----CCCceeecCchhhcccccCcccccCCCcccc
Confidence 45799999999999999999999999999999999999999876 588888777766665542221 234446
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG 157 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g 157 (433)
++.+.++.+|++..++++++..+++++++|+.++.+ ++.|.|++.+|+++.||+||+|||.++.|+.|+++| .|.+
T Consensus 83 ~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g 162 (545)
T 3uox_A 83 FASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKG 162 (545)
T ss_dssp SCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCC
Confidence 788999999999999999997789999999999987 468999999998899999999999888999999999 7889
Q ss_pred ceeccCCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhH--HhH-hhc
Q psy2398 158 EILHSMDYKSP-------DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ--WML-QLG 227 (433)
Q Consensus 158 ~~~~~~~~~~~-------~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~--~~~-~~p 227 (433)
..+|+..+... .++.+|+|+|||+|.||+|+|.+|++.+++||++.|++.|++|+.....+... .+. .+|
T Consensus 163 ~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p 242 (545)
T 3uox_A 163 ESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYP 242 (545)
T ss_dssp EEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHH
T ss_pred CeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhH
Confidence 99999888765 66789999999999999999999999999999999999999998654332211 111 122
Q ss_pred hhhc---------------------CchHHHH---------------------------------HHHHHHHHhcCCCCc
Q psy2398 228 NKFS---------------------SKEETMA---------------------------------YIKQVFKLAGFDGVD 253 (433)
Q Consensus 228 ~~~~---------------------~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 253 (433)
..+. .++++.. ......+....++.-
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~ 322 (545)
T 3uox_A 243 TILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVV 322 (545)
T ss_dssp HHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1110 0011111 111111111122222
Q ss_pred CCCCCC-CCCCCCCCCccChhhhhcccCCCeeec----CCceeeeCCeEEecCCceeeccEEEEccCCCCCCCCCCcc--
Q psy2398 254 YGLKKP-DHPLDAAHPIMNSQILYHIGHGDILPK----DDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE-- 326 (433)
Q Consensus 254 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-- 326 (433)
.....| .+...+.++.+++++.+.+..++|++. ..|+++++++|.++|| ++++|+||+||||+++..++...
T Consensus 323 ~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~i 401 (545)
T 3uox_A 323 AEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVTGSLDRIDI 401 (545)
T ss_dssp HHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSSCSCTTSEE
T ss_pred HHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCeEEeCCC-eeecCEEEECCccccccccCCCceE
Confidence 234467 688899999999999999999999975 6899999999999999 99999999999999876554322
Q ss_pred ----cccc---cCCccccccccccCCCCcEEEEccccc---cCChhhHHHHHHHHHHHHHhhh
Q psy2398 327 ----KLEW---KLGIPDLFIHIAPRNLDNIFFFGFVNA---AAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 327 ----~~~~---~~~~~~~~~~~~~~~~p~i~~iG~~~~---~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+... -...+..|.++..+++||+|++.-..+ .++...++|.|++++++.|...
T Consensus 402 ~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~ 464 (545)
T 3uox_A 402 RGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMISYM 464 (545)
T ss_dssp ECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 2111 124678899999999999999865553 2466788999999999999643
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-44 Score=337.94 Aligned_cols=344 Identities=21% Similarity=0.349 Sum_probs=275.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
++||+|||||++|+++|..|++.|++|+|||+.+.+||.|.+. |+.+.+..+.....++.++.+.....++.+.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA------WHSLHLFSPAGWSSIPGWPMPASQGPYPARA 76 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGS------CTTCBCSSCGGGSCCSSSCCCCCSSSSCBHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCC------CCCcEecCchhhhhCCCCCCCCCccCCCCHH
Confidence 4799999999999999999999999999999999999999986 7888888888888888888887777888999
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSM 163 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~ 163 (433)
++.+|+.++++++++ .++++++|+.++.+++.|. |++.++ ++.||+||+|||.++.|.+|+++| .+.+..+|+.
T Consensus 77 ~~~~~l~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~ 153 (357)
T 4a9w_A 77 EVLAYLAQYEQKYAL--PVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSA 153 (357)
T ss_dssp HHHHHHHHHHHHTTC--CEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGG
T ss_pred HHHHHHHHHHHHcCC--EEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEec
Confidence 999999999999998 4899999999999989999 998887 799999999999988999999999 7788899999
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHH
Q psy2398 164 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQV 243 (433)
Q Consensus 164 ~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 243 (433)
.+.....+.+++|+|||+|.+|+|+|..|++.+ +|+++.|++..++|....+.... .++.. .+.+
T Consensus 154 ~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~-- 218 (357)
T 4a9w_A 154 HYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLF-------ERATE-----RWKA-- 218 (357)
T ss_dssp GCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHH-------TC--------------
T ss_pred cCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHH-------HHHHH-----HHhc--
Confidence 999888889999999999999999999999998 59999998655656543221100 11111 0000
Q ss_pred HHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEEccCCCCCCCCC
Q psy2398 244 FKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFI 323 (433)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l 323 (433)
.. ...+ .+........+.+++.+...+..+.+.....+++++..++.+.||+++++|.||+|||++|+++++
T Consensus 219 --~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 290 (357)
T 4a9w_A 219 --QQ-----EGRE-PDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHL 290 (357)
T ss_dssp -----------------------CBCCCHHHHHHHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGG
T ss_pred --cc-----cccC-CCcccccccCcccChhHHHHHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCccc
Confidence 00 0000 001111123345667777788888888888999999999999999999999999999999999999
Q ss_pred CcccccccCCccccccc-cccCCCCcEEEEc--cccc-cCChhhHHHHHHHHHHHHHhhhhcC
Q psy2398 324 DKEKLEWKLGIPDLFIH-IAPRNLDNIFFFG--FVNA-AAGLGDGLRLQGQFIRSYIQAFIRK 382 (433)
Q Consensus 324 ~~~~~~~~~~~~~~~~~-~~~~~~p~i~~iG--~~~~-~~~~~~~a~~qa~~~a~~i~g~~~l 382 (433)
+...+..+.+++.+++. ++.++.|+||++| |+.. .+..+..|..||+.+|.+|...++-
T Consensus 291 ~~~gl~~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 291 KGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp TTTTCBCTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred CcccccCCCCCccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHh
Confidence 87666655567777776 5789999999999 5554 3455667899999999998776543
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=353.75 Aligned_cols=369 Identities=18% Similarity=0.292 Sum_probs=283.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCC----CCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPM----PDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 81 (433)
..+||+|||||++|+++|..|++.|++|+|||+.+.+||+|..+ +|++..+..+...+.++..+. ..+...
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~-----~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~ 89 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN-----RYPGARCDIESIEYCYSFSEEVLQEWNWTER 89 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-----CCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccc-----CCCceeecccccccccccChhhhhccCcccc
Confidence 35799999999999999999999999999999999999999866 577777777666665542221 123335
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC--CeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG 157 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~--~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g 157 (433)
++.+.++.+|++.+++++++..+++++++|++++.++ +.|+|++.+|+++.||+||+|||.++.|+.|+++| .|.|
T Consensus 90 ~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G 169 (542)
T 1w4x_A 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAG 169 (542)
T ss_dssp SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCS
T ss_pred cCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCC
Confidence 7789999999999999998777899999999999873 58999999988899999999999999999999999 6889
Q ss_pred ceeccCCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHH--hHh-hchh----
Q psy2398 158 EILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW--MLQ-LGNK---- 229 (433)
Q Consensus 158 ~~~~~~~~~-~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~--~~~-~p~~---- 229 (433)
..+|+..+. +..++.+|+|+|||+|.||+|+|..+++.+.+|+++.|++.|++|+.......... +.. +|..
T Consensus 170 ~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~ 249 (542)
T 1w4x_A 170 NLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249 (542)
T ss_dssp EEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHH
T ss_pred ceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHH
Confidence 999998887 44567899999999999999999999999999999999999888875432221110 000 1110
Q ss_pred ----------------hcC-chH--------------------------------HHHHHHHHHHHhcCCCCcCCCCCC-
Q psy2398 230 ----------------FSS-KEE--------------------------------TMAYIKQVFKLAGFDGVDYGLKKP- 259 (433)
Q Consensus 230 ----------------~~~-~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~- 259 (433)
+.. +++ ...+.....+....+........|
T Consensus 250 ~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~ 329 (542)
T 1w4x_A 250 RNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPK 329 (542)
T ss_dssp HTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCC
T ss_pred HhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCC
Confidence 000 000 001111111111223322333456
Q ss_pred CCCCCCCCCccChhhhhcccCCCeee----cCCceeeeCCeEEecCCceeeccEEEEccCCCCCCCCCCccc------cc
Q psy2398 260 DHPLDAAHPIMNSQILYHIGHGDILP----KDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEK------LE 329 (433)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~------~~ 329 (433)
++.+++.++.+++++.+.+..++|++ ...|+++++++|.++| +++++|+||+||||+++..++.... ..
T Consensus 330 ~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~~ 408 (542)
T 1w4x_A 330 GYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALTGALFKIDIRGVGNVA 408 (542)
T ss_dssp SSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEEEESS-CEEECSEEEECCCCCCTTHHHHTSEEECGGGCB
T ss_pred CCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCeEEeCC-eEEecCEEEEcCCccccccCcCceeeECCCCCC
Confidence 68889999999999999999999996 4689999999999999 8999999999999999766543221 11
Q ss_pred c---cCCccccccccccCCCCcEEEE-ccccc--cCChhhHHHHHHHHHHHHHhhhh
Q psy2398 330 W---KLGIPDLFIHIAPRNLDNIFFF-GFVNA--AAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 330 ~---~~~~~~~~~~~~~~~~p~i~~i-G~~~~--~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
. -.+.+..|..+..+++||+|++ |+.++ .++....+|.|+++++++|....
T Consensus 409 l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~ 465 (542)
T 1w4x_A 409 LKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMF 465 (542)
T ss_dssp HHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 1 1245677888889999999998 98854 34566899999999999997654
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=298.93 Aligned_cols=316 Identities=19% Similarity=0.215 Sum_probs=223.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCC---cccCCCCCC--CCC--
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF---NTQVPDYPM--PDN-- 78 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~-- 78 (433)
.+||+|||||++|+++|..|++.|. +|+|||+.+ +||.|....... ....+.. .+.+.++.. +..
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~ 76 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKST------RTITPSFTSNGFGMPDMNAISMDTSP 76 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTC------BCSSCCCCCGGGTCCCTTCSSTTCCH
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccc------cccCcchhcccCCchhhhhccccccc
Confidence 4799999999999999999999999 999999988 999987642211 1111111 111111110 111
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCC
Q psy2398 79 ----YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY 154 (433)
Q Consensus 79 ----~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~ 154 (433)
...++.+.++.+|+..+++++++ .++++++|+.++.+++.|.|++.++ ++.||+||+|||+++.|.+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~p~ip~---- 149 (369)
T 3d1c_A 77 AFTFNEEHISGETYAEYLQVVANHYEL--NIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNFPKKPF---- 149 (369)
T ss_dssp HHHHCCSSCBHHHHHHHHHHHHHHTTC--EEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTSBCCCS----
T ss_pred cccccccCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCccCCCC----
Confidence 12356778899999999999988 5888999999998777899998877 589999999999966554443
Q ss_pred CCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCch
Q psy2398 155 FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 234 (433)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 234 (433)
+..+|+..+.....+++++|+|||+|.+|+|+|..|++.+.+|+++.|++.+..+.+..... ++..+..
T Consensus 150 --~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~-------~~~~~~~-- 218 (369)
T 3d1c_A 150 --KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVR-------LSPYTRQ-- 218 (369)
T ss_dssp --SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTS-------CCHHHHH--
T ss_pred --CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcc-------CCHHHHH--
Confidence 45678877877777788999999999999999999999999999999987643222111000 1111111
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCC-eee--cCCceee--eCC--eEEecCCceee-
Q psy2398 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGD-ILP--KDDIKNL--NGN--IVHFVDDTHIE- 306 (433)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~--~~~v~~~--~~~--~v~~~dG~~~~- 306 (433)
.+.+ .+.... |.+ ...|.++ ++. .+.+.||+++.
T Consensus 219 ---~l~~-----------------------------------~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~ 260 (369)
T 3d1c_A 219 ---RLGN-----------------------------------VIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHT 260 (369)
T ss_dssp ---HHHH-----------------------------------HHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEE
T ss_pred ---HHHH-----------------------------------HHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEecc
Confidence 1111 111222 443 4566777 333 46788998765
Q ss_pred ccEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC----ChhhHHHHHHHHHHHHHhhhhcC
Q psy2398 307 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFIRK 382 (433)
Q Consensus 307 ~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----~~~~~a~~qa~~~a~~i~g~~~l 382 (433)
+|.||+|||++|+++++....+....+++.+++..+.++.|+||++||++... ..+..++.||+++|++|.++.++
T Consensus 261 ~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~ 340 (369)
T 3d1c_A 261 PHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGL 340 (369)
T ss_dssp SSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTC
T ss_pred CCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccCC
Confidence 69999999999998666544444344567788877889999999999998542 22346889999999999999999
Q ss_pred CCc
Q psy2398 383 SKG 385 (433)
Q Consensus 383 p~~ 385 (433)
|+.
T Consensus 341 p~~ 343 (369)
T 3d1c_A 341 PAK 343 (369)
T ss_dssp CCC
T ss_pred CCc
Confidence 997
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=284.08 Aligned_cols=296 Identities=18% Similarity=0.239 Sum_probs=218.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++||+|||||++|+++|..|++.|++|+|||+.+.+||.|... ++.... ..++.+ .....
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~------~~~~~~------~~~~~~-------~~~~~ 64 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL------YPEKYI------YDVAGF-------PKVYA 64 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT------CTTSEE------CCSTTC-------SSEEH
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc------CCCcee------eccCCC-------CCCCH
Confidence 46899999999999999999999999999999999999988654 222111 111111 11346
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC-CCCCCCCCC--CCCCceecc
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR-VARYPNYSG--YFSGEILHS 162 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s-~p~~p~i~g--~~~g~~~~~ 162 (433)
.++.+++.+.++++++ .++++++|+.++.+++.|.|++.++.++.||+||+|||..+ .|..|+++| .+.+..+|.
T Consensus 65 ~~~~~~l~~~~~~~~~--~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~ 142 (335)
T 2zbw_A 65 KDLVKGLVEQVAPFNP--VYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYY 142 (335)
T ss_dssp HHHHHHHHHHHGGGCC--EEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEES
T ss_pred HHHHHHHHHHHHHcCC--EEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEE
Confidence 7888899888888887 58889999999988778999998887899999999999865 578888888 455443433
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 163 ~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
. +.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+. +. + ...+.
T Consensus 143 ~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-~~-----~-------------------~~~~~ 196 (335)
T 2zbw_A 143 A-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-AH-----E-------------------ASVKE 196 (335)
T ss_dssp S-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-SC-----H-------------------HHHHH
T ss_pred e-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-cc-----H-------------------HHHHH
Confidence 2 344455678999999999999999999999999999999886421 10 0 11111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC----eEEec---CC--ceeeccEEE
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFV---DD--THIEVDTII 311 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~----~v~~~---dG--~~~~~D~vi 311 (433)
+.+.+ ....|++ ...+.++.+. .|.+. +| .++++|.||
T Consensus 197 l~~~l-------------------------------~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi 245 (335)
T 2zbw_A 197 LMKAH-------------------------------EEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVL 245 (335)
T ss_dssp HHHHH-------------------------------HTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred HHhcc-------------------------------ccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEE
Confidence 11111 1113332 2345555432 57776 77 568999999
Q ss_pred EccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEcccccc---CChhhHHHHHHHHHHHHHhhhh
Q psy2398 312 YATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 312 ~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~---~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|||++|+.++++...+..+.+++.++. .+.++.|+||++|||+.. +..+..|..||+.+|.++.+.+
T Consensus 246 ~a~G~~p~~~~l~~~~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 316 (335)
T 2zbw_A 246 ILAGYITKLGPLANWGLALEKNKIKVDT-TMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYA 316 (335)
T ss_dssp ECCCEEEECGGGGGSCCCEETTEEECCT-TCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCCCchHhhhcceeccCCeeeeCC-CCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHh
Confidence 9999999998887655555556677765 457899999999999853 3466778899999999887654
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-37 Score=286.44 Aligned_cols=291 Identities=17% Similarity=0.220 Sum_probs=222.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++||+|||||++|+++|..|++.|++|+|||+.+.+||.|... |+..... .++.+ .....
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~------~~~~~~~------~~~~~-------~~~~~ 66 (332)
T 3lzw_A 6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL------YPEKYIY------DVAGF-------PKIRA 66 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHH------CTTSEEC------CSTTC-------SSEEH
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhc------CCCceEe------ccCCC-------CCCCH
Confidence 45799999999999999999999999999999999999999643 3322211 11111 11247
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEccCcEEEeCEEEEccCCCC-CCCCCCCCC--CCCCceec
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR-VARYPNYSG--YFSGEILH 161 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~g~~~~~d~vIvAtG~~s-~p~~p~i~g--~~~g~~~~ 161 (433)
.++.+++.++++++++ +++++++|+.++..++ .|.|++.+++ +.||+||+|||..+ .|..|+++| .|.+..+|
T Consensus 67 ~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~ 143 (332)
T 3lzw_A 67 QELINNLKEQMAKFDQ--TICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLH 143 (332)
T ss_dssp HHHHHHHHHHHTTSCC--EEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEE
T ss_pred HHHHHHHHHHHHHhCC--cEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEE
Confidence 8899999999998887 6888999999998755 8999998876 99999999999865 788899999 56677777
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHH
Q psy2398 162 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 241 (433)
Q Consensus 162 ~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 241 (433)
+ .+.+...+++++++|||+|.+|+|+|..|.+.+.+|+++.|++.. .+. + ...+
T Consensus 144 ~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~-~~~-------~-----------------~~~~ 197 (332)
T 3lzw_A 144 Y-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKF-RAH-------E-----------------HSVE 197 (332)
T ss_dssp S-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSC-SSC-------H-----------------HHHH
T ss_pred E-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcC-Ccc-------H-----------------HHHH
Confidence 7 666666778999999999999999999999999999999988642 110 0 1111
Q ss_pred HHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC----eEEecC-----CceeeccEE
Q psy2398 242 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVD-----DTHIEVDTI 310 (433)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~----~v~~~d-----G~~~~~D~v 310 (433)
.+. ...|.+ ...+.++... .|.+.+ +.++++|.|
T Consensus 198 ~l~-----------------------------------~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~v 242 (332)
T 3lzw_A 198 NLH-----------------------------------ASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDL 242 (332)
T ss_dssp HHH-----------------------------------HSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEE
T ss_pred HHh-----------------------------------cCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEE
Confidence 110 112332 3345555543 377766 456899999
Q ss_pred EEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccc---cCChhhHHHHHHHHHHHHHhhhh
Q psy2398 311 IYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNA---AAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 311 i~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~---~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
|+|+|++|+.++++...+..+.+++.++. .+.++.|+||++|||+. .+..+..|..||+.+|.++....
T Consensus 243 v~a~G~~p~~~~~~~~~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 314 (332)
T 3lzw_A 243 IVNYGFVSSLGPIKNWGLDIEKNSIVVKS-TMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYM 314 (332)
T ss_dssp EECCCEECCCGGGGGSSCCEETTEEECCT-TSBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeccCCCchHHhhcCccccCCeEEeCC-CCceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhh
Confidence 99999999999988666666666777766 45688999999999984 34567788999999998887654
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=275.18 Aligned_cols=281 Identities=14% Similarity=0.104 Sum_probs=214.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
+||+|||||++|+++|..|++.|++|+|||+....++.+... ..+.. .......+
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~------------------~~~~~-------~~~~~~~~ 57 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS------------------HGFLG-------QDGKAPGE 57 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC------------------CSSTT-------CTTCCHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh------------------cCCcC-------CCCCCHHH
Confidence 799999999999999999999999999999976433222111 00100 12356788
Q ss_pred HHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccCC
Q psy2398 88 MLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMD 164 (433)
Q Consensus 88 ~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~~ 164 (433)
+.+++.+.+++++ + ..++++|+.++++++.|.|++.++.++.||+||+|||. .|..|+++| .+.+..++...
T Consensus 58 ~~~~~~~~~~~~~~v---~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~--~~~~~~~~g~~~~~~~~~~~~~ 132 (297)
T 3fbs_A 58 IIAEARRQIERYPTI---HWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGV--TDELPEIAGLRERWGSAVFHCP 132 (297)
T ss_dssp HHHHHHHHHTTCTTE---EEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCC--EEECCCCBTTGGGBTTTEESCH
T ss_pred HHHHHHHHHHhcCCe---EEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCC--CCCCCCCCCchhhcCCeeEEcc
Confidence 8999999888873 3 23366999999988889999999888999999999999 788899998 45555566655
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHH
Q psy2398 165 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVF 244 (433)
Q Consensus 165 ~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 244 (433)
+.....+++++|+|||+|.+|+|+|..|.+.+ +|+++.+++..+ .. .+.+.
T Consensus 133 ~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~-----------------~~---------~~~~~-- 183 (297)
T 3fbs_A 133 YCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEP-----------------DA---------DQHAL-- 183 (297)
T ss_dssp HHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCCC-----------------CH---------HHHHH--
T ss_pred cCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCCC-----------------CH---------HHHHH--
Confidence 55556677999999999999999999999998 999998775310 01 11111
Q ss_pred HHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee-cCCceeeeCC-eEEecCCceeeccEEEEccCCCCCCCC
Q psy2398 245 KLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNGN-IVHFVDDTHIEVDTIIYATGYNRHFPF 322 (433)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~v~~~~~~-~v~~~dG~~~~~D~vi~atG~~~~~~~ 322 (433)
+....|++ ...++++.+. .|.+.||+++++|.||+|||++|+.++
T Consensus 184 ---------------------------------l~~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~ 230 (297)
T 3fbs_A 184 ---------------------------------LAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDW 230 (297)
T ss_dssp ---------------------------------HHHTTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCEEECCCSC
T ss_pred ---------------------------------HHHCCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCcccCchh
Confidence 11113332 3567777765 799999999999999999999999998
Q ss_pred CCcccccccC---C-ccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhhc
Q psy2398 323 IDKEKLEWKL---G-IPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR 381 (433)
Q Consensus 323 l~~~~~~~~~---~-~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~ 381 (433)
++...+..+. + ++.++.. +.++.|+||++|||+..+..+..|..||+.+|.++.....
T Consensus 231 ~~~~g~~~~~~~~G~~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 292 (297)
T 3fbs_A 231 IEKLGCAVEEGPMGSTIVTDPM-KQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSIL 292 (297)
T ss_dssp HHHHTCCEEEETTEEEECCCTT-CBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccccCCCCceEEeCCC-CccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHHh
Confidence 8765554432 3 4555554 6789999999999998777888999999999999876543
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=276.04 Aligned_cols=287 Identities=15% Similarity=0.162 Sum_probs=212.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++||+|||||++|+++|..|++.|++|++||+. .+||.|..... +..++.+ +.....
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~---------------~~~~~~~------~~~~~~ 64 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEE---------------VENFPGF------PEPIAG 64 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSC---------------BCCSTTC------SSCBCH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccc---------------cccCCCC------CCCCCH
Confidence 3579999999999999999999999999999998 78998876411 0011111 113457
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCe-EEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCcee
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDI-WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 160 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~-~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~ 160 (433)
.++.+++.+.++++++ .+++ .+|+.++.+ ++. |.|.+.++.++.||+||+|||. .|..|+++| .+.+..+
T Consensus 65 ~~~~~~l~~~~~~~gv--~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~--~~~~~~i~g~~~~~~~~~ 139 (325)
T 2q7v_A 65 MELAQRMHQQAEKFGA--KVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA--DPRKLGIPGEDNFWGKGV 139 (325)
T ss_dssp HHHHHHHHHHHHHTTC--EEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE--EECCCCCTTTTTTBTTTE
T ss_pred HHHHHHHHHHHHHcCC--EEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC--CcCCCCCCChhhccCceE
Confidence 8899999999999887 4665 589999886 443 8888888888999999999998 788888988 4555555
Q ss_pred ccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHH
Q psy2398 161 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 240 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (433)
|.....+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+... . .+.
T Consensus 140 ~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------~---------~~~ 194 (325)
T 2q7v_A 140 STCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRAN----------------K---------VAQ 194 (325)
T ss_dssp ESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC----------------H---------HHH
T ss_pred EEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcc----------------h---------HHH
Confidence 554443334466899999999999999999999999999999988642100 0 111
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC----eEEec---CCc--eeeccE
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFV---DDT--HIEVDT 309 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~----~v~~~---dG~--~~~~D~ 309 (433)
+.+. ....|++ ...++++.+. +|.+. +|+ ++++|.
T Consensus 195 ~~l~----------------------------------~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~ 240 (325)
T 2q7v_A 195 ARAF----------------------------------ANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDG 240 (325)
T ss_dssp HHHH----------------------------------TCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSE
T ss_pred HHHH----------------------------------hcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCE
Confidence 1111 0113332 3345555432 46665 676 689999
Q ss_pred EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHHhhhh
Q psy2398 310 IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
||+|||++|+.++++.. +..+ .+++.+++. +.++.|+||++|||+.. +..+..|..||+.+|.++....
T Consensus 241 vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 311 (325)
T 2q7v_A 241 VFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDE-IYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQL 311 (325)
T ss_dssp EEECSCEEESCGGGTTT-SCBCTTSCBCCBTT-TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCCChHHHhhh-cccCCCccEecCCC-CccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754 4443 456666665 57899999999999875 4677889999999999987654
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=273.82 Aligned_cols=287 Identities=16% Similarity=0.223 Sum_probs=213.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++||+|||||++|+++|..|++.|+ +|++||+. ..||.|..... +..++. .+.....
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~---------------~~~~~~------~~~~~~~ 58 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSE---------------IENYPG------VKEVVSG 58 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSC---------------BCCSTT------CCSCBCH
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccccccc---------------cccCCC------CcccCCH
Confidence 3799999999999999999999999 99999995 68888765411 001111 1123567
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~ 163 (433)
.++.+++.+.++++++ .+++ ++|+.++.+++.|.+++.++.++.||+||+|||. .|..|+++| .|.+..+|..
T Consensus 59 ~~~~~~l~~~~~~~~v--~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~--~~~~~~~~g~~~~~~~~~~~~ 133 (311)
T 2q0l_A 59 LDFMQPWQEQCFRFGL--KHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG--SPKRTGIKGESEYWGKGVSTC 133 (311)
T ss_dssp HHHHHHHHHHHHTTSC--EEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE--EECCCCCBTHHHHBTTTEESC
T ss_pred HHHHHHHHHHHHHcCC--EEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC--CCCCCCCCChhhccCCcEEEe
Confidence 8899999999998887 4666 7899999888889998888888999999999998 778899988 4545555554
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHH
Q psy2398 164 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQV 243 (433)
Q Consensus 164 ~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 243 (433)
...+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+... . .+.+.+
T Consensus 134 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------~---------~~~~~l 188 (311)
T 2q0l_A 134 ATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCA----------------P---------ITLEHA 188 (311)
T ss_dssp HHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSC----------------H---------HHHHHH
T ss_pred ecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCC----------------H---------HHHHHH
Confidence 443334456899999999999999999999999999999987642100 0 111111
Q ss_pred HHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC-----eEEec---CCc--eeeccEEE
Q psy2398 244 FKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFV---DDT--HIEVDTII 311 (433)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~-----~v~~~---dG~--~~~~D~vi 311 (433)
. ....|.+ ...+.++... .|.+. +|+ ++++|.||
T Consensus 189 ~----------------------------------~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi 234 (311)
T 2q0l_A 189 K----------------------------------NNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFF 234 (311)
T ss_dssp H----------------------------------TCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEE
T ss_pred h----------------------------------hCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEE
Confidence 1 0113433 3345555432 46665 676 68999999
Q ss_pred EccCCCCCCCCCCccc----cccc-CCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHHhhhh
Q psy2398 312 YATGYNRHFPFIDKEK----LEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 312 ~atG~~~~~~~l~~~~----~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|+|++|+.++++... +..+ .+++.++.. +.++.|+||++|||+.. +..+..|..||+.+|.++...+
T Consensus 235 ~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 308 (311)
T 2q0l_A 235 IFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS-MKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYL 308 (311)
T ss_dssp ECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCccChhhhhcccccceeEeccCCCEEeCCc-cccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999987542 4443 456666654 57899999999999875 4677889999999999987643
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=277.00 Aligned_cols=285 Identities=18% Similarity=0.208 Sum_probs=214.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
++||+|||||++|+++|..|++.|++|+|||+. +||.|.+... ...++.+ ......
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~---------------~~~~~~~-------~~~~~~ 70 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGI---------------VDDYLGL-------IEIQAS 70 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCE---------------ECCSTTS-------TTEEHH
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeeccccc---------------ccccCCC-------CCCCHH
Confidence 479999999999999999999999999999998 8998876310 0001111 113468
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMD 164 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~~ 164 (433)
++.+++.+.++++++ ++++ ++|+.++.+++.|.+++.++.++.||+||+|||. .|..|+++| .+.+..+|...
T Consensus 71 ~~~~~~~~~~~~~~v--~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~--~~~~~~i~g~~~~~~~~~~~~~ 145 (323)
T 3f8d_A 71 DMIKVFNKHIEKYEV--PVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGV--KRRKLGVPGEQEFAGRGISYCS 145 (323)
T ss_dssp HHHHHHHHHHHTTTC--CEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCC--EECCCCCTTTTTTBTTTEESCH
T ss_pred HHHHHHHHHHHHcCC--EEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCC--CCccCCCCchhhhcCCceEEec
Confidence 899999999999888 4777 8999999888889999998888999999999999 688899998 55556666555
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHH
Q psy2398 165 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVF 244 (433)
Q Consensus 165 ~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 244 (433)
..+...+.+++|+|||+|.+|+|+|..|.+.+.+|+++.|++... +. + .+.+.+.
T Consensus 146 ~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~-~~-----~-------------------~~~~~~~ 200 (323)
T 3f8d_A 146 VADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK-AQ-----P-------------------IYVETVK 200 (323)
T ss_dssp HHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC-SC-----H-------------------HHHHHHH
T ss_pred cCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC-cC-----H-------------------HHHHHHH
Confidence 555556778999999999999999999999999999999886421 10 0 1111111
Q ss_pred HHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC----eEEecC---Cc--eeeccEEEEc
Q psy2398 245 KLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVD---DT--HIEVDTIIYA 313 (433)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~----~v~~~d---G~--~~~~D~vi~a 313 (433)
....|.+ ...+.++... .|.+.+ |+ ++++|.||+|
T Consensus 201 ----------------------------------~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a 246 (323)
T 3f8d_A 201 ----------------------------------KKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIE 246 (323)
T ss_dssp ----------------------------------TCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred ----------------------------------hCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEE
Confidence 1113443 3345666533 477766 77 6899999999
Q ss_pred cCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc---CChhhHHHHHHHHHHHHHhhhh
Q psy2398 314 TGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 314 tG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~---~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|++|+.++++...+.. ..+++.++. .+.++.|+||++|||+.. +..+..|..||+.+|.++....
T Consensus 247 ~G~~p~~~~~~~~g~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 247 IGFDPPTDFAKSNGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp CCEECCHHHHHHTTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCChhHHhhcCeeecCCCcEecCC-CceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHH
Confidence 99999988887655554 345666655 557899999999999874 5677889999999988886543
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=276.42 Aligned_cols=296 Identities=19% Similarity=0.249 Sum_probs=215.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++||+|||||++|+++|..|++.|++|+|||+.+.+||.|... ++.... ...+.+ .....
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~------~~~~~~------~~~~~~-------~~~~~ 73 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAAL------YPEKHI------YDVAGF-------PEVPA 73 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT------CTTSEE------CCSTTC-------SSEEH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccc------CCCccc------ccCCCC-------CCCCH
Confidence 35799999999999999999999999999999999999988643 121110 011110 01246
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEccCcEEEeCEEEEccCCCC-CCCCCCCCC---CCCCcee
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQR-VARYPNYSG---YFSGEIL 160 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g~~~~~d~vIvAtG~~s-~p~~p~i~g---~~~g~~~ 160 (433)
.++.+++.+.++++++ .++++++|+.++.++ +.|.|++.++.++.||+||+|||..+ .|..|+++| .+.+..+
T Consensus 74 ~~~~~~l~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v 151 (360)
T 3ab1_A 74 IDLVESLWAQAERYNP--DVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSV 151 (360)
T ss_dssp HHHHHHHHHHHHTTCC--EEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTE
T ss_pred HHHHHHHHHHHHHhCC--EEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceE
Confidence 7888999998888887 588899999999874 48999998888899999999999965 577777776 3444334
Q ss_pred ccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHH
Q psy2398 161 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 240 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (433)
|.. +++...+.+++|+|||+|.+|+|+|..|.+.+.+|+++.|++.+. +. + ...
T Consensus 152 ~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-~~-----~-------------------~~~ 205 (360)
T 3ab1_A 152 YYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ-GH-----G-------------------KTA 205 (360)
T ss_dssp ESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS-SC-----S-------------------HHH
T ss_pred EEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC-CC-----H-------------------HHH
Confidence 332 344556678999999999999999999999999999999886421 10 0 000
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeC--C---eEEec--CC--ceeeccE
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N---IVHFV--DD--THIEVDT 309 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~--~---~v~~~--dG--~~~~~D~ 309 (433)
+. +.+......|++ ...+.++.. . .|.+. +| .++++|.
T Consensus 206 ~~-------------------------------l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~ 254 (360)
T 3ab1_A 206 HE-------------------------------VERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADR 254 (360)
T ss_dssp HS-------------------------------SHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSE
T ss_pred HH-------------------------------HHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCE
Confidence 00 011111113443 234555542 2 56664 78 4689999
Q ss_pred EEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEcccccc---CChhhHHHHHHHHHHHHHhhhh
Q psy2398 310 IIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~---~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
||+|||++|+.++++...+..+.+++.++. .+.++.|+||++|||+.. +..+..|..||+.+|.++.+..
T Consensus 255 vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 327 (360)
T 3ab1_A 255 LLILIGFKSNLGPLARWDLELYENALVVDS-HMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYI 327 (360)
T ss_dssp EEECCCBCCSCGGGGGSSCCEETTEEECCT-TSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHhhccccccCeeeecC-CCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhc
Confidence 999999999998887655555556777766 457889999999999853 3566788899999998887654
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=275.79 Aligned_cols=289 Identities=19% Similarity=0.222 Sum_probs=216.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC----CCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME----SDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~----~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
.++||+|||||++|+++|..|++.|++|+|||+. ..+||.|..... ...++. ++.
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~---------------~~~~~~------~~~ 79 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTE---------------IENFPG------FPD 79 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSE---------------ECCSTT------CTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchh---------------hcccCC------Ccc
Confidence 4589999999999999999999999999999994 478888876410 011111 123
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---cCcEEEeCEEEEccCCCCCCCCCCCCC--CCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRVARYPNYSG--YFS 156 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~ 156 (433)
+....++.+++...++++++ .+++++ |+.++.+++.|.+++. ++.++.||+||+|||. .|..|+++| .+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~gv--~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~--~~~~~~~~g~~~~~ 154 (338)
T 3itj_A 80 GLTGSELMDRMREQSTKFGT--EIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA--SAKRMHLPGEETYW 154 (338)
T ss_dssp CEEHHHHHHHHHHHHHHTTC--EEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE--EECCCCCTTHHHHB
T ss_pred cCCHHHHHHHHHHHHHHcCC--EEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC--CcCCCCCCCchhcc
Confidence 45578999999999999988 588887 9999988888999884 5667999999999999 788999998 455
Q ss_pred CceeccCCCCCCC--CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCch
Q psy2398 157 GEILHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 234 (433)
Q Consensus 157 g~~~~~~~~~~~~--~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 234 (433)
+..++........ .+.+++++|||+|.+|+|+|..|.+.+.+|+++.|++.+... .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~--------------------~-- 212 (338)
T 3itj_A 155 QKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRAS--------------------T-- 212 (338)
T ss_dssp TTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSC--------------------H--
T ss_pred CccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCC--------------------H--
Confidence 5555554433333 467899999999999999999999999999999988642110 0
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC-----eEEecC-----C
Q psy2398 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFVD-----D 302 (433)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~-----~v~~~d-----G 302 (433)
.+.+.+. ....|++ ...+.++... .|.+.+ +
T Consensus 213 ---~~~~~l~----------------------------------~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~ 255 (338)
T 3itj_A 213 ---IMQKRAE----------------------------------KNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEE 255 (338)
T ss_dssp ---HHHHHHH----------------------------------HCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEE
T ss_pred ---HHHHHHH----------------------------------hcCCeEEeecceeEEEEcccCcEEEEEEEECCCCce
Confidence 1111111 0113333 3455666432 267765 4
Q ss_pred ceeeccEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHHhhhh
Q psy2398 303 THIEVDTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 303 ~~~~~D~vi~atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
.++++|.||+|||++|+.++++. .+.. +.+++.+.+..+.++.|+||++|||+.. +..+..|..||+.+|.++...+
T Consensus 256 ~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 334 (338)
T 3itj_A 256 TDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYL 334 (338)
T ss_dssp EEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHHH
Confidence 57999999999999999998875 5554 3556666677778999999999999964 4566788999999998887654
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=267.28 Aligned_cols=287 Identities=18% Similarity=0.250 Sum_probs=213.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEE-EccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDL-YEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v-~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..++||+|||||++|+++|..|++.|++|++ +|+ +.+||.|..... +..++. .+...
T Consensus 2 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~---------------~~~~~~------~~~~~ 59 (315)
T 3r9u_A 2 NAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSE---------------IENYPG------VAQVM 59 (315)
T ss_dssp CSCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSC---------------BCCSTT------CCSCB
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeece---------------eccCCC------CCCCC
Confidence 3568999999999999999999999999999 999 678998876511 000111 11234
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC--CeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCce
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 159 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~--~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~ 159 (433)
...++..++.++++++++ .++++ +|+.+ .++ +.|.+++..+.++.||+||+|||. .|..|+++| .+.+..
T Consensus 60 ~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~--~~~~~~~~g~~~~~~~~ 133 (315)
T 3r9u_A 60 DGISFMAPWSEQCMRFGL--KHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGS--APKKAGFKGEDEFFGKG 133 (315)
T ss_dssp CHHHHHHHHHHHHTTTCC--EEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCE--EECCCCCBTTTTTBTTT
T ss_pred CHHHHHHHHHHHHHHcCc--EEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCC--CCCCCCCCChhhcCCCe
Confidence 678999999999999988 47766 88999 776 789853333228999999999998 889999998 566666
Q ss_pred eccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 160 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
+|+..+.....+.+++++|||+|.+|+|+|..|.+.+.+|+++.+++.+... . .+
T Consensus 134 ~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~----------------~---------~~ 188 (315)
T 3r9u_A 134 VSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAA----------------P---------ST 188 (315)
T ss_dssp EESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSC----------------H---------HH
T ss_pred EEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCC----------------H---------HH
Confidence 7766655555667899999999999999999999999999999988642100 0 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeCC-----eEEec--CCc--eeecc
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN-----IVHFV--DDT--HIEVD 308 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~~-----~v~~~--dG~--~~~~D 308 (433)
.+... ....|+ ....+.++... .+.+. +|+ ++++|
T Consensus 189 ~~~~~----------------------------------~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D 234 (315)
T 3r9u_A 189 VEKVK----------------------------------KNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVP 234 (315)
T ss_dssp HHHHH----------------------------------HCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCS
T ss_pred HHHHH----------------------------------hcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecC
Confidence 11111 011333 34456666432 26665 886 68999
Q ss_pred EEEEccCCCCCCCCCCc---cc-cccc-CCccccccccccCCCCcEEEEccccc-cCChhhHHHHHHHHHHHHHhhh
Q psy2398 309 TIIYATGYNRHFPFIDK---EK-LEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 309 ~vi~atG~~~~~~~l~~---~~-~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~-~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
.||+|+|++|+.++++. .. +..+ .+++.++. .+.++.|+||++|||+. .+..+..|..||+.+|.++...
T Consensus 235 ~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~-~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 310 (315)
T 3r9u_A 235 GIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAY 310 (315)
T ss_dssp CEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT-TCBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCchhhhcccccceeeecCCCcEEeCC-CcccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHH
Confidence 99999999999988875 21 4443 35666665 55789999999999975 3466788999999999888654
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=269.55 Aligned_cols=286 Identities=15% Similarity=0.175 Sum_probs=209.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++||+|||||++|+++|..|++.|++|++||+. ..||.|..... ...++.+ +.....
T Consensus 13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~---------------~~~~~~~------~~~~~~ 70 (335)
T 2a87_A 13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTD---------------VENYPGF------RNGITG 70 (335)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSC---------------BCCSTTC------TTCBCH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccch---------------hhhcCCC------CCCCCH
Confidence 4579999999999999999999999999999975 68888765411 0011111 112356
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEE-EEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceecc
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV-ELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHS 162 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v-~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~ 162 (433)
.++.+++.+.++++++ .+++++ |+.++. .+.|.| .+.++.++.||+||+|||. .|..|+++| .+.+..+|+
T Consensus 71 ~~~~~~l~~~~~~~~v--~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~--~~~~~~i~g~~~~~~~~~~~ 144 (335)
T 2a87_A 71 PELMDEMREQALRFGA--DLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGA--AARYLQVPGEQELLGRGVSS 144 (335)
T ss_dssp HHHHHHHHHHHHHTTC--EEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCE--EECCCCCTHHHHTBTTTEES
T ss_pred HHHHHHHHHHHHHcCC--EEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCC--CccCCCCCchHhccCCceEE
Confidence 7889999999998887 477776 888887 667888 7878878999999999998 788889988 455555555
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 163 ~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
........+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+... . .+.+.
T Consensus 145 ~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~----------------~---------~~~~~ 199 (335)
T 2a87_A 145 CATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRAS----------------K---------IMLDR 199 (335)
T ss_dssp CHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSC----------------T---------THHHH
T ss_pred eeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCcc----------------H---------HHHHH
Confidence 4333333356899999999999999999999999999999988642110 0 11111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC----eEEec---CC--ceeeccEEE
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFV---DD--THIEVDTII 311 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~----~v~~~---dG--~~~~~D~vi 311 (433)
+. ....|++ ...+.++.+. .+.+. +| +++++|.||
T Consensus 200 ~~----------------------------------~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi 245 (335)
T 2a87_A 200 AR----------------------------------NNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVF 245 (335)
T ss_dssp HH----------------------------------HCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEE
T ss_pred Hh----------------------------------ccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEE
Confidence 11 1113333 3345555433 36665 45 468999999
Q ss_pred EccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHHhhh
Q psy2398 312 YATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 312 ~atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+|||++|+.++++ ..+.. ..+++.+++..+.++.|+||++|||+.. ......|..||+.+|.++...
T Consensus 246 ~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~ 314 (335)
T 2a87_A 246 VAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERW 314 (335)
T ss_dssp ECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999887 34444 3466777776778999999999999875 345677888888888877543
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=264.43 Aligned_cols=286 Identities=14% Similarity=0.167 Sum_probs=206.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.+||+|||||++|+++|..|++.|++|++||+ ...||.|..... +..++.+ ......
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~---------------~~~~~~~-------~~~~~~ 72 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPL---------------VENYLGF-------KSIVGS 72 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCSC---------------BCCBTTB-------SSBCHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccch---------------hhhcCCC-------cccCHH
Confidence 47999999999999999999999999999999 468888765411 0001110 124567
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMD 164 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~~ 164 (433)
++.+++.+.++++++ .+++ .+|..++.+++.|.|.+ ++.++.||+||+|||. .|..|+++| .+.+..+|...
T Consensus 73 ~~~~~~~~~~~~~~v--~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~--~~~~~~i~g~~~~~~~~~~~~~ 146 (319)
T 3cty_A 73 ELAKLFADHAANYAK--IREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGT--THKHLGVKGESEYFGKGTSYCS 146 (319)
T ss_dssp HHHHHHHHHHHTTSE--EEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCE--EECCCCCBTTTTTBTTTEESCH
T ss_pred HHHHHHHHHHHHcCC--EEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCC--CcccCCCCChHHhCCceEEEEE
Confidence 888889888888876 4665 68999998888888887 4567999999999998 678888888 33334444332
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHH
Q psy2398 165 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVF 244 (433)
Q Consensus 165 ~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 244 (433)
..+...+.+++++|||+|.+|+|+|..|++.+.+|++++|++.+... . .+.+.+.
T Consensus 147 ~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~----------------~---------~l~~~l~ 201 (319)
T 3cty_A 147 TCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCE----------------N---------AYVQEIK 201 (319)
T ss_dssp HHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSC----------------H---------HHHHHHH
T ss_pred ecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCC----------------H---------HHHHHHh
Confidence 22223456899999999999999999999999999999987642100 0 1111111
Q ss_pred HHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEEec---CCc--eeeccEEEEcc
Q psy2398 245 KLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVHFV---DDT--HIEVDTIIYAT 314 (433)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~~~---dG~--~~~~D~vi~at 314 (433)
..++ ++.....+.++... ++.+. +|+ ++++|.||+||
T Consensus 202 --------~~gv-------------------------~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~ 248 (319)
T 3cty_A 202 --------KRNI-------------------------PYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYV 248 (319)
T ss_dssp --------HTTC-------------------------CEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECC
T ss_pred --------cCCc-------------------------EEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEee
Confidence 0111 22223344454321 45664 676 58999999999
Q ss_pred CCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHHhhhh
Q psy2398 315 GYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 315 G~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
|++|+.++++...+..+ .+++.++.. +.++.|+||++|||+.. ...+..|..||+.+|.++...+
T Consensus 249 G~~p~~~~l~~~gl~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 315 (319)
T 3cty_A 249 GLIPQTSFLKDSGVKLDERGYIVVDSR-QRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDS 315 (319)
T ss_dssp CEEECCGGGTTSCCCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccChHHHhhccccccCCccEeCCCC-CccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999886555543 356666655 57899999999999875 3567789999999999987654
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=266.07 Aligned_cols=290 Identities=20% Similarity=0.284 Sum_probs=208.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++||+|||||++|+++|..|++.|++|++||+. ..||.|..... ...++. ++.....
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~---------------~~~~~~------~~~~~~~ 61 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE---------------VENWPG------DPNDLTG 61 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGGCSB---------------CCCSTT------CCSSCBH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEecchh---------------hhhCCC------CCCCCCH
Confidence 3479999999999999999999999999999974 68887765310 001111 1122456
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~ 163 (433)
.++.+++...++++++ .+++++ |+.++.+.+.|.+ +.++.++.||+||+|||. .|..|+++| .+.+..+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~--~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~--~~~~~~~~g~~~~~~~~~~~~ 135 (320)
T 1trb_A 62 PLLMERMHEHATKFET--EIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGA--SARYLGLPSEEAFKGRGVSAC 135 (320)
T ss_dssp HHHHHHHHHHHHHTTC--EEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCE--EECCCCCHHHHHTBTTTEESC
T ss_pred HHHHHHHHHHHHHCCC--EEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCC--CcCCCCCCChHHhCCceeEec
Confidence 7888999999998887 477775 8888877778888 667778999999999998 678888888 4444445544
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHH
Q psy2398 164 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQV 243 (433)
Q Consensus 164 ~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 243 (433)
...+.....+++|+|||+|.+|+|+|..|.+.+.+|+++.|++.+... . .+.+.+
T Consensus 136 ~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------~---------~~~~~l 190 (320)
T 1trb_A 136 ATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE----------------K---------ILIKRL 190 (320)
T ss_dssp HHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC----------------H---------HHHHHH
T ss_pred ccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccC----------------H---------HHHHHH
Confidence 333333456899999999999999999999999999999988642110 0 111111
Q ss_pred HHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC-----eEEecC----C--ceeeccEE
Q psy2398 244 FKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFVD----D--THIEVDTI 310 (433)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~-----~v~~~d----G--~~~~~D~v 310 (433)
.+.+ ....|++ ...+.++... +|.+.+ | .++++|.|
T Consensus 191 ~~~l-------------------------------~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~v 239 (320)
T 1trb_A 191 MDKV-------------------------------ENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL 239 (320)
T ss_dssp HHHH-------------------------------HTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEE
T ss_pred HHhc-------------------------------ccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEE
Confidence 1111 1113443 4456666432 266665 5 46899999
Q ss_pred EEccCCCCCCCCCCcccccccCCcccccccc----ccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhhhh
Q psy2398 311 IYATGYNRHFPFIDKEKLEWKLGIPDLFIHI----APRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 311 i~atG~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g~~ 380 (433)
|+|||++|+.++++ ..+..+++++.++..+ +.++.|+||++|||+..+ .....|..||+.+|..+...+
T Consensus 240 v~a~G~~p~~~~~~-~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 313 (320)
T 1trb_A 240 FVAIGHSPNTAIFE-GQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYL 313 (320)
T ss_dssp EECSCEEESCGGGT-TTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCChHHhc-ccccccCceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHH
Confidence 99999999998887 3344445566666653 578899999999998753 456778899999998886554
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=267.86 Aligned_cols=287 Identities=18% Similarity=0.228 Sum_probs=205.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEcc----CCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEM----ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~----~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
.++||+|||||++|+++|..|++.|++|++||+ ....||.|..... ...++.+ +.
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~---------------~~~~~~~------~~ 65 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD---------------VENFPGF------PE 65 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSE---------------ECCSTTC------TT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccc---------------cccCCCC------cc
Confidence 347999999999999999999999999999998 5567776654310 0011111 12
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--C----C
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--Y----F 155 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~----~ 155 (433)
.....++.+++.+.+++.++ .+++++ |..++.+++.|+|++ ++.++.||+||+|||. .|..|+++| . |
T Consensus 66 ~~~~~~~~~~l~~~~~~~gv--~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~--~~~~~~~~g~~~~~~~~ 139 (333)
T 1vdc_A 66 GILGVELTDKFRKQSERFGT--TIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGA--VAKRLSFVGSGEVLGGF 139 (333)
T ss_dssp CEEHHHHHHHHHHHHHHTTC--EEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCE--EECCCCCBTCSSSSSCC
T ss_pred CCCHHHHHHHHHHHHHHCCC--EEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCC--CcCCCCCCCcccccccc
Confidence 23467888999999988887 477775 888887777888888 6778999999999999 678888888 2 4
Q ss_pred CCceeccCCCCCCCC--CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCc
Q psy2398 156 SGEILHSMDYKSPDQ--IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 233 (433)
Q Consensus 156 ~g~~~~~~~~~~~~~--~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 233 (433)
.+..+|+........ ..+++|+|||+|.+|+|+|..|.+.+.+|+++.|++.+... .
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~----------------~----- 198 (333)
T 1vdc_A 140 WNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS----------------K----- 198 (333)
T ss_dssp BTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC----------------H-----
T ss_pred ccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCcc----------------H-----
Confidence 444455443322222 56899999999999999999999999999999988642100 0
Q ss_pred hHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC-------eEEec---C
Q psy2398 234 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-------IVHFV---D 301 (433)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~-------~v~~~---d 301 (433)
.+.+... ....|++ ...+.++.+. .|.+. +
T Consensus 199 ----~~~~~~~----------------------------------~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~ 240 (333)
T 1vdc_A 199 ----IMQQRAL----------------------------------SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVT 240 (333)
T ss_dssp ----HHHHHHH----------------------------------TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTT
T ss_pred ----HHHHHHH----------------------------------hCCCeeEecCCceEEEeCCCCccceeeEEEEecCC
Confidence 1111111 1113433 3345555422 26665 4
Q ss_pred C--ceeeccEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHh
Q psy2398 302 D--THIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQ 377 (433)
Q Consensus 302 G--~~~~~D~vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~ 377 (433)
| .++++|.||+|||++|+.++++. .+..+ .+++.+++..+.++.|+||++|||+..+ .....|..||+.+|.++.
T Consensus 241 g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 319 (333)
T 1vdc_A 241 GDVSDLKVSGLFFAIGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE 319 (333)
T ss_dssp CCEEEEECSEEEECSCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEecCEEEEEeCCccchHHhhc-cccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHH
Confidence 5 46899999999999999998873 44443 4667777766788999999999998753 456678888888777665
Q ss_pred hh
Q psy2398 378 AF 379 (433)
Q Consensus 378 g~ 379 (433)
..
T Consensus 320 ~~ 321 (333)
T 1vdc_A 320 HY 321 (333)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=262.59 Aligned_cols=284 Identities=17% Similarity=0.168 Sum_probs=206.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
+||+|||||++|+++|..|++.|++|+++|+ ..||.|..... . ..+.. ..+....+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~~----~-----------~~~~~-------~~~~~~~~ 57 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTVD----I-----------ENYIS-------VPKTEGQK 57 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCCE----E-----------CCBTT-------BSSEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceeccccc----c-----------ccccC-------cCCCCHHH
Confidence 7999999999999999999999999999986 47888875310 0 00000 02345678
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceecc
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHS 162 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~ 162 (433)
+.+++.++++++++ .++++++|+.++.+ ++.|.|++.++.++.||+||+|||+ .|..|+++| .+.+..+|.
T Consensus 58 ~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~--~~~~~~~~g~~~~~~~~~~~ 133 (310)
T 1fl2_A 58 LAGALKVHVDEYDV--DVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA--KWRNMNVPGEDQYRTKGVTY 133 (310)
T ss_dssp HHHHHHHHHHTSCE--EEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE--EECCCCCTTTTTTBTTTEES
T ss_pred HHHHHHHHHHHcCC--eEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC--CcCCCCCCChhhcccceeEE
Confidence 89999999988887 58888899999865 2479999988878999999999998 678888888 454444554
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 163 ~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
........+.+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.+... . .+.+.
T Consensus 134 ~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------~---------~~~~~ 188 (310)
T 1fl2_A 134 CPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD----------------Q---------VLQDK 188 (310)
T ss_dssp CHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSC----------------H---------HHHHH
T ss_pred eccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCcc----------------H---------HHHHH
Confidence 3332233456899999999999999999999999999999988742100 0 11111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC-----eEEecC---Cc--eeeccEE
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFVD---DT--HIEVDTI 310 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~-----~v~~~d---G~--~~~~D~v 310 (433)
+. . ...|++ ...+.++.+. .+.+.+ |+ ++++|.|
T Consensus 189 l~----~------------------------------~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~v 234 (310)
T 1fl2_A 189 LR----S------------------------------LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGI 234 (310)
T ss_dssp HH----T------------------------------CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred Hh----h------------------------------CCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEE
Confidence 11 0 013332 3345555432 466654 54 5899999
Q ss_pred EEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhhhh
Q psy2398 311 IYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 311 i~atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g~~ 380 (433)
|+|||++|+.++++.. +.. ..+++.+++.+ .++.|+||++|||+..+ .....|..||+.+|.++...+
T Consensus 235 i~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 304 (310)
T 1fl2_A 235 FVQIGLLPNTNWLEGA-VERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 304 (310)
T ss_dssp EECSCEEESCGGGTTT-SCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCccCchHHhcc-ccccCCCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHH
Confidence 9999999999888753 444 34566666654 68999999999998754 456788899999998887543
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=264.01 Aligned_cols=290 Identities=17% Similarity=0.186 Sum_probs=195.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++||+||||||+|++||..|+++|++|+|||+.. .||.+... .+++... +..++.+ +.....
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~-~gg~~~~G----~~~~~~~------i~~~~g~------~~~i~~ 65 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM-AGGVAAGG----QLTTTTI------IENFPGF------PNGIDG 65 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS-GGGCCTTC----GGGGSSE------ECCSTTC------TTCEEH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCcccCC----CcCChHH------hhhccCC------cccCCH
Confidence 57999999999999999999999999999999864 55555432 1221111 1112111 123456
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~ 163 (433)
.++.+.+...+++++. ......+..+....+.+.+.+.++.++.||+||+|||+ .|+.|++|| .+.+..++..
T Consensus 66 ~~l~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~--~~~~~~ipG~~~~~~~~~~~~ 140 (314)
T 4a5l_A 66 NELMMNMRTQSEKYGT---TIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGA--TAKRMHVPGEDKYWQNGVSAC 140 (314)
T ss_dssp HHHHHHHHHHHHHTTC---EEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCE--EECCCCCTTHHHHBTTTEESC
T ss_pred HHHHHHHHHHHhhcCc---EEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccc--cccccCCCccccccccceeee
Confidence 7888888888988876 23345666666666777788888888999999999998 899999999 3333444443
Q ss_pred CCCCC--CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHH
Q psy2398 164 DYKSP--DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 241 (433)
Q Consensus 164 ~~~~~--~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 241 (433)
.+... ..+++++++|||+|.+|+|+|..|++.|.+||+++|.+....+. ....
T Consensus 141 ~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~-------------------------~~~~ 195 (314)
T 4a5l_A 141 AICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASK-------------------------TMQE 195 (314)
T ss_dssp HHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCH-------------------------HHHH
T ss_pred hhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccc-------------------------hhhh
Confidence 33322 23568999999999999999999999999999999876421110 1111
Q ss_pred HHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeee---C--CeEE-----ecCCceeeccE
Q psy2398 242 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN---G--NIVH-----FVDDTHIEVDT 309 (433)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~---~--~~v~-----~~dG~~~~~D~ 309 (433)
... . .. .+.. ...+.++. . ..+. ..+++++++|.
T Consensus 196 ~~~---~-~~------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~ 241 (314)
T 4a5l_A 196 RVL---N-HP------------------------------KIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAG 241 (314)
T ss_dssp HHH---T-CT------------------------------TEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSE
T ss_pred hhh---c-cc------------------------------ceeeEeeeeeEEEEeeeeccceeEEeecccccceeecccc
Confidence 100 0 00 0000 00111111 0 1122 23456799999
Q ss_pred EEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhh
Q psy2398 310 IIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g 378 (433)
|++|+|++|+..++... +....++..+++ .+.|+.|+|||+|||+..+ .....|..|++.+|..+..
T Consensus 242 vi~a~G~~pn~~~l~~~-~~~~~~G~iv~~-~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~ 309 (314)
T 4a5l_A 242 LFYAIGHSPNSKFLGGQ-VKTADDGYILTE-GPKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEK 309 (314)
T ss_dssp EEECSCEEESCGGGTTS-SCBCTTSCBCCB-TTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ceEecccccChhHhccc-ceEcCCeeEeCC-CCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754 333334444555 4589999999999998754 3566777788888776643
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=260.34 Aligned_cols=285 Identities=16% Similarity=0.125 Sum_probs=192.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
+..|||+||||||+|++||..|++.|++|+|||+. .+||++.+..+ .+ .++.+ ....
T Consensus 4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~~~~----i~-----------~~p~~-------~~~~ 60 (312)
T 4gcm_A 4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMANTEE----VE-----------NFPGF-------EMIT 60 (312)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSC----BC-----------CSTTC-------SSBC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeecccc----cC-----------CcCCc-------cccc
Confidence 34599999999999999999999999999999985 68888765411 10 11111 1234
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceecc
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHS 162 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~ 162 (433)
..++.........+... .+..+..+..... .. ..+...++.++.||+||+|||+ .|+.|++|| .+.+..++.
T Consensus 61 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~d~liiAtGs--~~~~~~ipG~~~~~~~~v~~ 134 (312)
T 4gcm_A 61 GPDLSTKMFEHAKKFGA--VYQYGDIKSVEDK-GE-YKVINFGNKELTAKAVIIATGA--EYKKIGVPGEQELGGRGVSY 134 (312)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEECCCCEEEEC-SS-CEEEECSSCEEEEEEEEECCCE--EECCCCCTTTTTTBTTTEES
T ss_pred hHHHHHHHHHHHhhccc--cccceeeeeeeee-ec-ceeeccCCeEEEeceeEEcccC--ccCcCCCCChhhhCCccEEe
Confidence 56666666666666554 3444444433332 22 2344456678999999999998 899999999 455556665
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 163 ~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
....+...+++|+|+|||+|++|+|+|..|++.+.+||+++|++.. +|.. ...+.
T Consensus 135 ~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-~~~~------------------------~~~~~ 189 (312)
T 4gcm_A 135 CAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL-RAQR------------------------ILQDR 189 (312)
T ss_dssp CHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC-CSCH------------------------HHHHH
T ss_pred eeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc-Ccch------------------------hHHHH
Confidence 5555555677999999999999999999999999999999988742 1110 00111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecC-----Cceeee----CCe-EEe--cCCceeeccEE
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-----DIKNLN----GNI-VHF--VDDTHIEVDTI 310 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~v~~~~----~~~-v~~--~dG~~~~~D~v 310 (433)
.. ... .+.... .+...+ ... ... .++..+++|.|
T Consensus 190 ~~---~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 235 (312)
T 4gcm_A 190 AF---KND-------------------------------KIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGV 235 (312)
T ss_dssp HH---HCT-------------------------------TEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEE
T ss_pred HH---Hhc-------------------------------CcceeeecceeeeeccccccccceeeeecCCceeEEeeeeE
Confidence 00 000 111000 000000 001 111 23346899999
Q ss_pred EEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHHhh
Q psy2398 311 IYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 311 i~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i~g 378 (433)
++++|.+|+..++....+..+.+.+.+++ .+.|+.|+||++|||+.. ...+..|..|++.+|.++..
T Consensus 236 ~~~~g~~~~~~~~~~~g~~~~~G~I~vd~-~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~ 303 (312)
T 4gcm_A 236 FIYIGMKPLTAPFKDLGITNDVGYIVTKD-DMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAE 303 (312)
T ss_dssp EECSCEEESCGGGGGGTCBCTTSCBCCCT-TSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecCCCcCchhHHhcceecCCCeEeeCC-CCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999998887665555556666665 558999999999999864 35677888999999888854
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=274.83 Aligned_cols=279 Identities=16% Similarity=0.176 Sum_probs=192.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+.++|+|||||++|+++|..|...+.+|+|||+.+..+. ..+ ..+. .+. .....
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y----~~~---~l~~-------~l~------------g~~~~ 61 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY----YRP---RLNE-------IIA------------KNKSI 61 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB----CGG---GHHH-------HHH------------SCCCG
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc----ccC---hhhH-------HHc------------CCCCH
Confidence 457999999999999999999778899999999876541 100 0000 000 00111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 165 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~ 165 (433)
.++..+..++.+++++ .++++++|+.|+++.+ +|++.+++++.||+||+|||+ .|+.|+++|.. .+.+....
T Consensus 62 ~~l~~~~~~~~~~~~i--~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~--~p~~p~i~G~~--~v~~~~~~ 133 (385)
T 3klj_A 62 DDILIKKNDWYEKNNI--KVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGS--IANKIKVPHAD--EIFSLYSY 133 (385)
T ss_dssp GGTBSSCHHHHHHTTC--EEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE--EECCCCCTTCS--CEECCSSH
T ss_pred HHccCCCHHHHHHCCC--EEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCC--CcCCCCCCCCC--CeEEeCCH
Confidence 1222223344556677 5888999999987544 677888888999999999998 89999999822 33333322
Q ss_pred CCCCCC-----CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHH
Q psy2398 166 KSPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 240 (433)
Q Consensus 166 ~~~~~~-----~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (433)
.+...+ .+++|+|||+|.+|+|+|..|++.+.+|+++.+++.+ +++. +.. ...
T Consensus 134 ~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~-l~~~----------------~~~-----~~~ 191 (385)
T 3klj_A 134 DDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP-LERQ----------------LDR-----DGG 191 (385)
T ss_dssp HHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS-CTTT----------------SCH-----HHH
T ss_pred HHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc-chhh----------------cCH-----HHH
Confidence 222212 2789999999999999999999999999999988752 2221 111 111
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEEccCCCCCC
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHF 320 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~ 320 (433)
+.+.+.+. ..++ ++.....++++ |+++++|.||+|||++|+.
T Consensus 192 ~~~~~~l~----~~gV-------------------------~~~~~~~v~~i---------g~~~~~D~vv~a~G~~p~~ 233 (385)
T 3klj_A 192 LFLKDKLD----RLGI-------------------------KIYTNSNFEEM---------GDLIRSSCVITAVGVKPNL 233 (385)
T ss_dssp HHHHHHHH----TTTC-------------------------EEECSCCGGGC---------HHHHHHSEEEECCCEEECC
T ss_pred HHHHHHHH----hCCC-------------------------EEEeCCEEEEc---------CeEEecCeEEECcCcccCh
Confidence 11111111 1111 22233445444 6778999999999999999
Q ss_pred CCCCcccccccCCccccccccccCCCCcEEEEcccccc----CChhhHHHHHHHHHHHHHhhhh
Q psy2398 321 PFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~----~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
++++...+..++ ++.++ ..+.++.|+||++|||+.. +..+..|..||+.+|.+|.|+.
T Consensus 234 ~~~~~~gl~~~~-gi~vd-~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~ 295 (385)
T 3klj_A 234 DFIKDTEIASKR-GILVN-DHMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED 295 (385)
T ss_dssp GGGTTSCCCBSS-SEEEC-TTCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhcCCCcCC-CEEEC-CCcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence 998876666654 45555 4557899999999999862 4567899999999999999864
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=264.85 Aligned_cols=299 Identities=16% Similarity=0.120 Sum_probs=199.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC-C---cccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK-F---NTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 82 (433)
.+||+|||||++|+++|..|++.|++|+|||+++.+||+|.+.. |.++..+.... . +..++.. ...
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~g----ciPsk~l~~~a~~~~~~~~~~~~------~~~ 73 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSG----CVPSKTVREVIQTAWRLTNIANV------KIP 73 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHS----HHHHHHHHHHHHHHHHHHHHHCS------CCC
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccC----CCchHHHHHHHHHHHHHHhcccC------CCC
Confidence 58999999999999999999999999999999999999998642 22221111000 0 0000000 011
Q ss_pred CCHHHHHH------------HHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcE--EEeCEEEEccCCCCCCCC
Q psy2398 83 PNHSMMLD------------YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKK--KKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 83 ~~~~~~~~------------~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~--~~~d~vIvAtG~~s~p~~ 148 (433)
.....+.. ++....++.++ .+. ..++..++ .+.+.|.+.+++. +.||+||+|||+ .|..
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~-~g~v~~id--~~~~~V~~~~g~~~~~~~d~lviAtG~--~p~~ 146 (466)
T 3l8k_A 74 LDFSTVQDRKDYVQELRFKQHKRNMSQYETL--TFY-KGYVKIKD--PTHVIVKTDEGKEIEAETRYMIIASGA--ETAK 146 (466)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCTTE--EEE-SEEEEEEE--TTEEEEEETTSCEEEEEEEEEEECCCE--EECC
T ss_pred cCHHHHHHHHHhheeccccchHHHHHHhCCC--EEE-EeEEEEec--CCeEEEEcCCCcEEEEecCEEEECCCC--CccC
Confidence 22222222 22222223333 222 33555554 5788998888888 999999999998 8999
Q ss_pred CCCCCCCCCceeccCCCC---CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 149 PNYSGYFSGEILHSMDYK---SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~---~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
|+++|.. .+.++.++. ......+++++|||+|.+|+|+|..+.+.+.+|+++.|.+.. +|..
T Consensus 147 p~i~G~~--~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~------------ 211 (466)
T 3l8k_A 147 LRLPGVE--YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA-LITL------------ 211 (466)
T ss_dssp CCCTTGG--GSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-CTTS------------
T ss_pred CCCCCcc--ceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcC-CCCC------------
Confidence 9999821 233333322 111224689999999999999999999999999999988642 2211
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC---Ce--EEec
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG---NI--VHFV 300 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~---~~--v~~~ 300 (433)
+.. .+.+.+.+.+. + ++.....++++.. .. +.++
T Consensus 212 ----~d~-----~~~~~l~~~l~-------v-------------------------~i~~~~~v~~i~~~~~~~v~v~~~ 250 (466)
T 3l8k_A 212 ----EDQ-----DIVNTLLSILK-------L-------------------------NIKFNSPVTEVKKIKDDEYEVIYS 250 (466)
T ss_dssp ----CCH-----HHHHHHHHHHC-------C-------------------------CEECSCCEEEEEEEETTEEEEEEC
T ss_pred ----CCH-----HHHHHHHhcCE-------E-------------------------EEEECCEEEEEEEcCCCcEEEEEE
Confidence 011 11222111111 1 3444455666643 22 5666
Q ss_pred --CCc--eeeccEEEEccCCCCCCCC-CCcccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 301 --DDT--HIEVDTIIYATGYNRHFPF-IDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 301 --dG~--~~~~D~vi~atG~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
||+ ++++|.||+|||++|+.++ ++..++..+.+++.++ ..+.++.|+||++|||+..+...+.|..||+.+|.+
T Consensus 251 ~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~Gi~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~ 329 (466)
T 3l8k_A 251 TKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVD-ETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANN 329 (466)
T ss_dssp CTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSSBCCC-TTCBCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHH
T ss_pred ecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCCEeEC-CCccCCCCCEEEEEecCCCCccHhHHHHHHHHHHHH
Confidence 676 7899999999999999884 4555555543445554 556789999999999998778888999999999999
Q ss_pred Hhhh
Q psy2398 376 IQAF 379 (433)
Q Consensus 376 i~g~ 379 (433)
|.|.
T Consensus 330 i~~~ 333 (466)
T 3l8k_A 330 IMAN 333 (466)
T ss_dssp HHTT
T ss_pred HhCC
Confidence 9975
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=265.41 Aligned_cols=356 Identities=16% Similarity=0.156 Sum_probs=208.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC--------------CeEEEccCCCCCCcccCCCCCCccccceEeecC--CCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI--------------NYDLYEMESDLGGVWNSQASCGRVYPSLHLISP--KFNTQ 69 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~--------------~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~--~~~~~ 69 (433)
+.+||+||||||+||++|.+|.+.|. ..+.+|+.+.++ |... .++++..++.+ +.+.+
T Consensus 38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g----~~~p~~~~q~~fl~Dlvt 111 (501)
T 4b63_A 38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSG----MLVPGSKMQISFIKDLAT 111 (501)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGG----GCCTTCBCSSCGGGSSST
T ss_pred CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCC----CCCCCccccccchhhhcc
Confidence 45799999999999999999987643 456677766654 6543 34566555543 22222
Q ss_pred CCC-----------------CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC--------CeEEEE
Q psy2398 70 VPD-----------------YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--------DIWEVE 124 (433)
Q Consensus 70 ~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~--------~~~~v~ 124 (433)
+.+ ++++.+...|+++.++.+|++.++++++. +++|+++|++|++.. +.|+|+
T Consensus 112 l~~P~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~--~vrf~~~V~~v~~~~~~~~~~~~~~~~V~ 189 (501)
T 4b63_A 112 LRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSD--VVAYGEEVVEVIPGKSDPSSSVVDFFTVR 189 (501)
T ss_dssp TTCTTCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGG--GEEESEEEEEEEEECSSTTSSCBCEEEEE
T ss_pred ccCCCCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCC--ceEcceEEEeeccccccccccccceEEEE
Confidence 221 11223344689999999999999999764 699999999999862 369999
Q ss_pred EccC-----cEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCCC------CCCCCCCeEEEEcCCCCHHHHHHHHh
Q psy2398 125 LSNG-----KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKS------PDQIRNKRVLVVGAGNSGCDIAVDAS 193 (433)
Q Consensus 125 ~~~g-----~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~~------~~~~~~~~v~VvG~G~sg~d~a~~l~ 193 (433)
+.++ .++.++.||+|||. .|.+|...+ |.+.++|+..|.. ...++||+|+|||+|.||+|++.+|+
T Consensus 190 ~~~~~~g~~~~~~ar~vVlatG~--~P~iP~~~~-~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~ 266 (501)
T 4b63_A 190 SRNVETGEISARRTRKVVIAIGG--TAKMPSGLP-QDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQ 266 (501)
T ss_dssp EEETTTCCEEEEEEEEEEECCCC--EECCCTTSC-CCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHH
T ss_pred EecCCCceEEEEEeCEEEECcCC--CCCCCCCCC-CCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHH
Confidence 8764 25889999999997 788876654 6789999999875 45689999999999999999999998
Q ss_pred cc--CCcEEEEEecCceeecccCCCCCh-------hHHhHhhchhhcC---------------chHHHHHHHHHHH-Hhc
Q psy2398 194 HH--SEKVYHSTRRGYHYYPKFIDGKPT-------PQWMLQLGNKFSS---------------KEETMAYIKQVFK-LAG 248 (433)
Q Consensus 194 ~~--~~~V~~~~r~~~~~~p~~~~~~~~-------~~~~~~~p~~~~~---------------~~~~~~~~~~~~~-~~~ 248 (433)
+. +.+|+++.|++.++ |........ ..++..+|...+. ......+.+.+.+ .+.
T Consensus 267 ~~~~~~~v~~~~R~~~~~-p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~ 345 (501)
T 4b63_A 267 KRYPNSRTTLIMRDSAMR-PSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVK 345 (501)
T ss_dssp HHSTTCEEEEECSSSSCC-BCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCceEEEEeCCCccc-cccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccC
Confidence 75 78999999998653 332111110 0111112222111 0000011111110 111
Q ss_pred CCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEEccCCCCCCC-CCCcc-
Q psy2398 249 FDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFP-FIDKE- 326 (433)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~~-~l~~~- 326 (433)
+ .... ...+.+...... .........+++.+...+.++++.++.+.||+++++|+||+||||+++.+ +|...
T Consensus 346 ~-~~~~---~~~~~l~~~~~v--~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~ 419 (501)
T 4b63_A 346 N-PDET---QWQHRILPERKI--TRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKV 419 (501)
T ss_dssp C-SCGG---GCSSEEECSEEE--EEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGG
T ss_pred C-Cccc---ccceeecCCcce--eeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchh
Confidence 1 0000 000001100000 01111223445555555667778889999999999999999999999864 33221
Q ss_pred -cccc-cCCcccccccc-------ccCCCCcEEEEcccccc----CChhhHHHHHHHHHHHHHhhh
Q psy2398 327 -KLEW-KLGIPDLFIHI-------APRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 327 -~~~~-~~~~~~~~~~~-------~~~~~p~i~~iG~~~~~----~~~~~~a~~qa~~~a~~i~g~ 379 (433)
.+.. ..+.+.+..++ .....++||+.|.+... .+...+...-+..+++.|.|+
T Consensus 420 ~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~~a~R~~~I~~~l~g~ 485 (501)
T 4b63_A 420 QHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMVQSIFGE 485 (501)
T ss_dssp GGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTTTTSSTTHHHHHHHHHHHHHHH
T ss_pred hhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 1122 22344443322 11235779999865421 122233222333456666664
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=264.76 Aligned_cols=284 Identities=16% Similarity=0.167 Sum_probs=209.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+||+|||||++|+++|..|++.|++|+++|+ .+||.|..... . ..+... .+...
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~----~-----------~~~~~~-------~~~~~ 266 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVD----I-----------ENYISV-------PKTEG 266 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSC----B-----------CCBTTB-------SSBCH
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccccccc----c-----------cccCCC-------CCCCH
Confidence 468999999999999999999999999999996 47888875410 0 001000 13457
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCcee
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 160 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~ 160 (433)
.++.+++...++++++ .++++++|+.++++ ++.|.|++.+|.++.||+||+|||+ .|+.|+++| .+.+..+
T Consensus 267 ~~l~~~l~~~~~~~gv--~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~--~~~~~~ipG~~~~~~~~v 342 (521)
T 1hyu_A 267 QKLAGALKAHVSDYDV--DVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA--KWRNMNVPGEDQYRTKGV 342 (521)
T ss_dssp HHHHHHHHHHHHTSCE--EEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE--EECCCCCTTTTTTTTTTE
T ss_pred HHHHHHHHHHHHHcCC--EEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC--CcCCCCCCChhhhcCceE
Confidence 7889999999998887 58889999999864 3479999988888999999999998 678888888 5555555
Q ss_pred ccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHH
Q psy2398 161 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 240 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (433)
+.........+.+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.+... . .+.
T Consensus 343 ~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~----------------~---------~l~ 397 (521)
T 1hyu_A 343 TYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD----------------Q---------VLQ 397 (521)
T ss_dssp ECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSC----------------H---------HHH
T ss_pred EEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcC----------------H---------HHH
Confidence 655554444567999999999999999999999999999999987643100 0 111
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccC-CCeee--cCCceeeeCC-----eEEecC---Cc--eeec
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH-GDILP--KDDIKNLNGN-----IVHFVD---DT--HIEV 307 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~v~~~~~~-----~v~~~d---G~--~~~~ 307 (433)
+. + .. .+|++ ...++++.+. ++.+.+ |+ ++++
T Consensus 398 ~~----l-------------------------------~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~ 442 (521)
T 1hyu_A 398 DK----V-------------------------------RSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVAL 442 (521)
T ss_dssp HH----H-------------------------------TTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEEC
T ss_pred HH----H-------------------------------hcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEc
Confidence 11 1 11 13333 3345555432 356654 54 5899
Q ss_pred cEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhhh
Q psy2398 308 DTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 308 D~vi~atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g~ 379 (433)
|.||+|+|++|+.++++.. +.. ..+++.++.. +.++.|+||++|||+..+ ..+..|..||+.+|..+...
T Consensus 443 D~vi~a~G~~pn~~~l~~~-l~~~~~G~I~Vd~~-~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 514 (521)
T 1hyu_A 443 AGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAK-CETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDY 514 (521)
T ss_dssp SEEEECCCEEESCGGGTTT-SCBCTTSCBCCCTT-CBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCCchHHhhh-hccCCCCcEEeCCC-CCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHH
Confidence 9999999999999998753 444 3455666554 468999999999998754 45678888999888877653
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=264.69 Aligned_cols=290 Identities=14% Similarity=0.160 Sum_probs=194.8
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+||+|||||++|+++|..|++. |.+|+|||+++.+|...... ..+.. .. ....
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~----~~~~~------~~---------------~~~~ 57 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGL----SAYFN------HT---------------INEL 57 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccc----hhhhc------CC---------------CCCH
Confidence 6999999999999999999998 89999999998765211000 00000 00 0000
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc-cCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~-~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~ 164 (433)
.++..+......++++ .++++++|+.++.+.+.+.+... ++.++.||+||+|||+ .|..|+++|.....+++...
T Consensus 58 ~~~~~~~~~~~~~~gi--~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~--~p~~p~i~g~~~~~v~~~~~ 133 (452)
T 3oc4_A 58 HEARYITEEELRRQKI--QLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGA--SQFSTQIRGSQTEKLLKYKF 133 (452)
T ss_dssp ---CCCCHHHHHHTTE--EEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCC--CBCCCCCBTTTCTTEEEGGG
T ss_pred HHhhcCCHHHHHHCCC--EEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCc--ccCCCCCCCCCCCCEEEeCC
Confidence 1111112233455666 47789999999887787777522 3456899999999999 88999999832334555544
Q ss_pred CCCCCC-----CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 165 YKSPDQ-----IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 165 ~~~~~~-----~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
+.+... ..+++++|||+|.+|+|+|..+.+.+.+|+++.|.+.. +|+. +.. .+
T Consensus 134 ~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~----------------~d~-----~~ 191 (452)
T 3oc4_A 134 LSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL-LPKY----------------FDK-----EM 191 (452)
T ss_dssp CC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-STTT----------------CCH-----HH
T ss_pred HHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc-cccc----------------CCH-----HH
Confidence 433322 25789999999999999999999999999999988752 2211 111 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCe--EEecCCceeeccEEEEccC
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNI--VHFVDDTHIEVDTIIYATG 315 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~--v~~~dG~~~~~D~vi~atG 315 (433)
.+.+.+.+.. .++ ++.....|+++. +.. |.+++| ++++|.||+|||
T Consensus 192 ~~~l~~~l~~----~GV-------------------------~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G 241 (452)
T 3oc4_A 192 VAEVQKSLEK----QAV-------------------------IFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALN 241 (452)
T ss_dssp HHHHHHHHHT----TTE-------------------------EEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSC
T ss_pred HHHHHHHHHH----cCC-------------------------EEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcC
Confidence 1111111110 111 233456677765 222 556666 899999999999
Q ss_pred CCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccC----------ChhhHHHHHHHHHHHHHhhhh
Q psy2398 316 YNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 316 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----------~~~~~a~~qa~~~a~~i~g~~ 380 (433)
++|+.++++.. +.. .++++.+++ .+.++.|+||++|||+..+ ..++.|..||+.+|.+|.|..
T Consensus 242 ~~p~~~~l~~~-~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~ 315 (452)
T 3oc4_A 242 LHPQLAYLDKK-IQRNLDQTIAVDA-YLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKT 315 (452)
T ss_dssp CBCCCSSCCTT-SCBCTTSCBCCCT-TCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCC
T ss_pred CCCChHHHHhh-hccCCCCCEEECc-CccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence 99999988754 444 345566665 4578999999999998642 467889999999999998864
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=266.61 Aligned_cols=288 Identities=17% Similarity=0.160 Sum_probs=195.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCC--eEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNIN--YDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~--v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+|||||++|+++|..|++.|.+ |++||+.+..+... +.+ ++..... ... +... ...
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~----------~~l----~~~~~~g-~~~-~~~~--~~~- 63 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDR----------PSL----SKAVLDG-SLE-RPPI--LAE- 63 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCS----------GGG----GTHHHHT-SSS-SCCB--SSC-
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCC----------ccc----cHHHhCC-CCC-HHHh--cCC-
Confidence 5999999999999999999999987 99999987653110 000 0000000 000 0000 000
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 165 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~ 165 (433)
.++.++.++ +++++++|+.++.+. +.|++.++.++.||+||+|||+ .|..|+++|.-...+.+....
T Consensus 64 -------~~~~~~~~i--~~~~~~~v~~id~~~--~~v~~~~g~~~~~d~lvlAtG~--~p~~~~ipG~~~~~v~~~~~~ 130 (410)
T 3ef6_A 64 -------ADWYGEARI--DMLTGPEVTALDVQT--RTISLDDGTTLSADAIVIATGS--RARTMALPGSQLPGVVTLRTY 130 (410)
T ss_dssp -------TTHHHHTTC--EEEESCCEEEEETTT--TEEEETTSCEEECSEEEECCCE--EECCCCCTTTTSTTEECCCSH
T ss_pred -------HHHHHHCCC--EEEeCCEEEEEECCC--CEEEECCCCEEECCEEEEccCC--cccCCCCCCccccceEEeccH
Confidence 122345566 588899999998643 4778888888999999999998 789999998222233332222
Q ss_pred CCC-----CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHH
Q psy2398 166 KSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 240 (433)
Q Consensus 166 ~~~-----~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (433)
.+. ....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.++ ++. ++..+.. .+.
T Consensus 131 ~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l-~~~------------~~~~~~~-----~l~ 192 (410)
T 3ef6_A 131 GDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL-VRV------------LGRRIGA-----WLR 192 (410)
T ss_dssp HHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-HHH------------HCHHHHH-----HHH
T ss_pred HHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc-hhh------------cCHHHHH-----HHH
Confidence 111 11247899999999999999999999999999999887532 110 1111111 111
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEecCCceeeccEEEEccCC
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFVDDTHIEVDTIIYATGY 316 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~dG~~~~~D~vi~atG~ 316 (433)
+.+. ..++ ++.....|+++.+. .|.++||+++++|.||+|||+
T Consensus 193 ~~l~--------~~GV-------------------------~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~ 239 (410)
T 3ef6_A 193 GLLT--------ELGV-------------------------QVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGA 239 (410)
T ss_dssp HHHH--------HHTC-------------------------EEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred HHHH--------HCCC-------------------------EEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence 1111 0111 33345567777643 688999999999999999999
Q ss_pred CCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCC---------hhhHHHHHHHHHHHHHhhhh
Q psy2398 317 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG---------LGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~---------~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|+.++++...+..+ +++.++. .+.++.|+||++|||+..+. .+..|..||+.+|.+|.|+.
T Consensus 240 ~p~~~l~~~~gl~~~-~gi~vd~-~~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 310 (410)
T 3ef6_A 240 EPADQLARQAGLACD-RGVIVDH-CGATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN 310 (410)
T ss_dssp EECCHHHHHTTCCBS-SSEECCT-TSBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred eecHHHHHhCCCccC-CeEEEcc-CeeECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC
Confidence 999988876666665 4455554 44789999999999986432 36899999999999999874
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-32 Score=249.36 Aligned_cols=284 Identities=13% Similarity=0.142 Sum_probs=193.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.+.+||+||||||+|++||.+|++.|++|+|||+. ..||.+..+ |+ .++.. ....
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~~~~------~~--------------~~~~~----~~~~ 58 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRVTQN------SH--------------GFITR----DGIK 58 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGGSSC------BC--------------CSTTC----TTBC
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCeeeee------cC--------------CccCC----CCCC
Confidence 35699999999999999999999999999999986 456655433 11 11100 1234
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceec
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILH 161 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~ 161 (433)
..++.+...+.+.+++. ...+...+..+... .+.+++.+.++.++.||+||+|||+ .|+.|++|| .+.+..++
T Consensus 59 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs--~p~~p~i~G~~~~~~~~v~ 134 (304)
T 4fk1_A 59 PEEFKEIGLNEVMKYPS--VHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGM--QEEFPSIPNVREYYGKSLF 134 (304)
T ss_dssp HHHHHHHHHHHHTTSTT--EEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCC--EEECCSCTTHHHHBTTTEE
T ss_pred HHHHHHHHHHHHHhcCC--EEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCC--ccccccccCccccccceee
Confidence 56666666666666553 23344556666554 6778999999999999999999998 899999999 45555455
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCC-HHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHH
Q psy2398 162 SMDYKSPDQIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 240 (433)
Q Consensus 162 ~~~~~~~~~~~~~~v~VvG~G~s-g~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (433)
.........+++++++|||+|.. +.|+|..+...+.+|+++.+.... . . ...
T Consensus 135 ~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~-~-----------------~---------~~~ 187 (304)
T 4fk1_A 135 SCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL-S-----------------Q---------TIM 187 (304)
T ss_dssp SCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC-C-----------------H---------HHH
T ss_pred eccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc-h-----------------h---------hhh
Confidence 44444445567888999998865 568888888889999988776421 0 0 111
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee-----CCeEEecCCceeeccEEEEccC
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN-----GNIVHFVDDTHIEVDTIIYATG 315 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~-----~~~v~~~dG~~~~~D~vi~atG 315 (433)
+.+. . .++ .+ ....++.+. -..|.++||+++++|.+|+++|
T Consensus 188 ~~l~----~----~g~-------------------------~~-~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g 233 (304)
T 4fk1_A 188 DELS----N----KNI-------------------------PV-ITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPT 233 (304)
T ss_dssp HHHH----T----TTC-------------------------CE-ECSCEEEEESGGGCCCEEEETTSCEECCCEEEECCE
T ss_pred hhhh----c----cce-------------------------eE-eeeeEEEeecCCCeeeeeeccccceeeecceeeeec
Confidence 1111 0 000 01 111233332 1457889999999999988888
Q ss_pred CCCCCCCCCcccccccC-CccccccccccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhhh
Q psy2398 316 YNRHFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 316 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g~ 379 (433)
.+++..++....++.+. +++.+++ .+.|+.|+|||+|||+..+ ..+..|..|++.+|..+...
T Consensus 234 ~~~~~~~~~~~g~~~~~~G~I~vd~-~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~ 298 (304)
T 4fk1_A 234 FFRPNQFIEQLGCELQSNGTFVIDD-FGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSD 298 (304)
T ss_dssp EECSSCHHHHTTCCCCTTSSSCSST-TCBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCChhhhhcCeEECCCCCEEECc-CCccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 88877777766666543 4465554 5589999999999998643 44667888888888777543
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=271.53 Aligned_cols=310 Identities=15% Similarity=0.128 Sum_probs=208.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----CcccCCCCC-CCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQVPDYP-MPDNY 79 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~ 79 (433)
..++||+|||||++|+++|..|++.|.+|+|||+.+.+||+|.+.. |.+...+.... .+..+..+. ++...
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g----~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~ 116 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNA----CVPHHLFSDCAAELMLARTFSGQYWFPDMT 116 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHS----HHHHHHHHHHHHHHHHHHHTTTSTTCCCCT
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccC----cCchHHHHHHHHHHHHHhhhhhcCcHHHHH
Confidence 3468999999999999999999999999999999988999987542 12211111000 000011111 12222
Q ss_pred CCCCCHHHHHHHHHH-------HH-----HHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 80 PVYPNHSMMLDYLRS-------YA-----KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~-------~~-----~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
..+++..++.+++.. +. ++.++ .+.++.++..++. . .|.+. +..+.||+||+|||+ .|.
T Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~--~--~v~~~-g~~~~~d~lViATGs--~p~ 187 (523)
T 1mo9_A 117 EKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNL--EYILNCPAKVIDN--H--TVEAA-GKVFKAKNLILAVGA--GPG 187 (523)
T ss_dssp TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCC--CEEESSCCEEEET--T--EEEET-TEEEEBSCEEECCCE--ECC
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCc--EEEEeeEEEEeeC--C--EEEEC-CEEEEeCEEEECCCC--CCC
Confidence 233446677666643 33 55566 3555667777653 3 45554 567999999999998 889
Q ss_pred CCCCCCCCCCceeccCCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhh
Q psy2398 148 YPNYSGYFSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 226 (433)
Q Consensus 148 ~p~i~g~~~g~~~~~~~~~-~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 226 (433)
.|+++|.....++++.++. ......+++++|||+|.+|+|+|..+.+.+.+|+++.+.+. ++|..
T Consensus 188 ~p~i~G~~~~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~-~l~~~------------- 253 (523)
T 1mo9_A 188 TLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP-LKLIK------------- 253 (523)
T ss_dssp CCCSTTTTSBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT-TTTCC-------------
T ss_pred CCCCCCcccCcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc-ccccc-------------
Confidence 9999982222355555444 34444559999999999999999999999999999998864 22211
Q ss_pred chhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C------eEE
Q psy2398 227 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N------IVH 298 (433)
Q Consensus 227 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~------~v~ 298 (433)
+..+.. .+.+. +. ..++ ++.....|+++.. . .|.
T Consensus 254 ~~~~~~-----~l~~~----l~----~~GV-------------------------~i~~~~~V~~i~~~~~~~v~~~~v~ 295 (523)
T 1mo9_A 254 DNETRA-----YVLDR----MK----EQGM-------------------------EIISGSNVTRIEEDANGRVQAVVAM 295 (523)
T ss_dssp SHHHHH-----HHHHH----HH----HTTC-------------------------EEESSCEEEEEEECTTSBEEEEEEE
T ss_pred cHHHHH-----HHHHH----HH----hCCc-------------------------EEEECCEEEEEEEcCCCceEEEEEE
Confidence 111111 11111 11 1111 2333445555532 2 366
Q ss_pred ecCCc-eeeccEEEEccCCCCCCC-CCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 299 FVDDT-HIEVDTIIYATGYNRHFP-FIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 299 ~~dG~-~~~~D~vi~atG~~~~~~-~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
+++|+ ++++|.||+|||++|+.+ +++..++..+ .+++.+++. +.++.|+||++|||+..+...+.|..||+.+|.+
T Consensus 296 ~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~ 374 (523)
T 1mo9_A 296 TPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEY-LQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARN 374 (523)
T ss_dssp ETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHH
T ss_pred ECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCC-CccCCCCEEEEeecCCCcccHHHHHHHHHHHHHH
Confidence 77887 899999999999999988 6776566553 455666654 5789999999999998777888999999999999
Q ss_pred Hhhhh
Q psy2398 376 IQAFI 380 (433)
Q Consensus 376 i~g~~ 380 (433)
+.|..
T Consensus 375 i~g~~ 379 (523)
T 1mo9_A 375 VMGEK 379 (523)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 99853
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-32 Score=264.17 Aligned_cols=294 Identities=16% Similarity=0.172 Sum_probs=199.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+|||||++|++||..|+++| .+|+|||+.+..++... +.+... .... ..........
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-------~l~~~~---~~~~--------~~~~~~~~~~ 62 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC-------ALPYVI---GEVV--------EDRRYALAYT 62 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG-------GHHHHH---TTSS--------CCGGGTBCCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc-------hhHHHH---cCCc--------cchhhhhhcC
Confidence 47999999999999999999987 47999999875432100 011000 0000 0000001111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---CcEEEeCEEEEccCCCCCCCCCCCCC--CCCCcee
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 160 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~ 160 (433)
. ..+.++.++ .++.+++|+.++.......+.... +..+.||+||+|||+ .|+.|+++| .+..+.+
T Consensus 63 ~------~~~~~~~~i--~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs--~p~~p~i~g~~~~~~~~~ 132 (437)
T 4eqs_A 63 P------EKFYDRKQI--TVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA--SANSLGFESDITFTLRNL 132 (437)
T ss_dssp H------HHHHHHHCC--EEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCE--EECCCCCCCTTEECCSSH
T ss_pred H------HHHHHhcCC--EEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCC--ccccccccCceEEeeccH
Confidence 1 233455677 478899999998766666665443 235889999999998 889999988 2222111
Q ss_pred ccCCC-CCC-CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHH
Q psy2398 161 HSMDY-KSP-DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 238 (433)
Q Consensus 161 ~~~~~-~~~-~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 238 (433)
..... ... ....+++++|||+|.+|+|+|..+.+.+.+||+++|.+. ++|.. +..+.. .
T Consensus 133 ~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-ll~~~-------------d~~~~~-----~ 193 (437)
T 4eqs_A 133 EDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK-INKLM-------------DADMNQ-----P 193 (437)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSC-CSTTS-------------CGGGGH-----H
T ss_pred HHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecc-ccccc-------------cchhHH-----H
Confidence 11000 000 012367999999999999999999999999999998875 22321 111111 2
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEEccCCCC
Q psy2398 239 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNR 318 (433)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~ 318 (433)
+.+.+. ..++ ++.....|+++++..+.+++|+++++|.||+|+|++|
T Consensus 194 ~~~~l~--------~~gV-------------------------~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~P 240 (437)
T 4eqs_A 194 ILDELD--------KREI-------------------------PYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHP 240 (437)
T ss_dssp HHHHHH--------HTTC-------------------------CEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEE
T ss_pred HHHHhh--------ccce-------------------------EEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceec
Confidence 222211 1122 4556778899999999999999999999999999999
Q ss_pred CCCCCCcccccccC-CccccccccccCCCCcEEEEccccccC----------ChhhHHHHHHHHHHHHHhhhhcC
Q psy2398 319 HFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAFIRK 382 (433)
Q Consensus 319 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~p~i~~iG~~~~~~----------~~~~~a~~qa~~~a~~i~g~~~l 382 (433)
+..+++..++..+. +++.+++ .+.|+.||||++|||+..+ ..++.|..||+.+|++|.|....
T Consensus 241 n~~~~~~~gl~~~~~G~I~vd~-~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~ 314 (437)
T 4eqs_A 241 NSKFIESSNIKLDRKGFIPVND-KFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTI 314 (437)
T ss_dssp SCGGGTTSSCCCCTTSCEECCT-TCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTC
T ss_pred CcHHHHhhhhhhccCCcEecCC-CccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCc
Confidence 99999877776643 4565554 5578999999999998532 35778999999999999987543
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.8e-33 Score=266.86 Aligned_cols=292 Identities=14% Similarity=0.128 Sum_probs=195.0
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDN 78 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (433)
|+.+..++||+|||||++|+++|..|++.|. +|++||+.+.++. ..+ ..+ +.+..- .. +..
T Consensus 1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~----~~~---~~~-------~~~~~~-~~--~~~ 63 (408)
T 2gqw_A 1 MSQEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY----DRP---PLS-------KDFMAH-GD--AEK 63 (408)
T ss_dssp -----CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB----CSG---GGG-------THHHHH-CC--GGG
T ss_pred CCCCCCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcc----cCC---CCC-------HHHhCC-Cc--hhh
Confidence 4433456899999999999999999999988 5999999875421 100 000 000000 00 000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCC-CCCCCC
Q psy2398 79 YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY-SGYFSG 157 (433)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i-~g~~~g 157 (433)
. +++ .++++++ .++++++|+.++.+ .++|++.++.++.||+||+|||+ .|..|++ +|.. .
T Consensus 64 --~---------~~~-~~~~~~v--~~~~~~~v~~i~~~--~~~v~~~~g~~~~~d~lviAtG~--~~~~~~i~~G~~-~ 124 (408)
T 2gqw_A 64 --I---------RLD-CKRAPEV--EWLLGVTAQSFDPQ--AHTVALSDGRTLPYGTLVLATGA--APRALPTLQGAT-M 124 (408)
T ss_dssp --S---------BCC-CTTSCSC--EEEETCCEEEEETT--TTEEEETTSCEEECSEEEECCCE--EECCCGGGTTCS-S
T ss_pred --h---------hHH-HHHHCCC--EEEcCCEEEEEECC--CCEEEECCCCEEECCEEEECCCC--CCCCCCccCCCC-C
Confidence 0 000 1233455 57788889998763 45788888888999999999998 8888888 8822 2
Q ss_pred ceeccCCCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 158 EILHSMDYKSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 158 ~~~~~~~~~~~-----~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
.+.+.....+. ....+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+. ++|+. ++..+..
T Consensus 125 ~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~------------~~~~~~~ 191 (408)
T 2gqw_A 125 PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR-LMSRA------------APATLAD 191 (408)
T ss_dssp CEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SSTTT------------SCHHHHH
T ss_pred cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc-ccccc------------cCHHHHH
Confidence 23332221111 112478999999999999999999999999999998864 22211 0111111
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEE
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIY 312 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~ 312 (433)
.+.+.+. ..++ ++.....++++.+..|.++||+++++|.||+
T Consensus 192 -----~l~~~l~--------~~GV-------------------------~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~ 233 (408)
T 2gqw_A 192 -----FVARYHA--------AQGV-------------------------DLRFERSVTGSVDGVVLLDDGTRIAADMVVV 233 (408)
T ss_dssp -----HHHHHHH--------HTTC-------------------------EEEESCCEEEEETTEEEETTSCEEECSEEEE
T ss_pred -----HHHHHHH--------HcCc-------------------------EEEeCCEEEEEECCEEEECCCCEEEcCEEEE
Confidence 1111111 1112 3444566777764478899999999999999
Q ss_pred ccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCC----------hhhHHHHHHHHHHHHHhhhhc
Q psy2398 313 ATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG----------LGDGLRLQGQFIRSYIQAFIR 381 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~----------~~~~a~~qa~~~a~~i~g~~~ 381 (433)
|+|++|+.++++...+..++ ++.++. .+.++.|+||++|||+..+. .+..|..||+.+|.+|.|...
T Consensus 234 a~G~~p~~~l~~~~gl~~~~-gi~Vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~ 310 (408)
T 2gqw_A 234 GIGVLANDALARAAGLACDD-GIFVDA-YGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA 310 (408)
T ss_dssp CSCEEECCHHHHHHTCCBSS-SEECCT-TCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS
T ss_pred CcCCCccHHHHHhCCCCCCC-CEEECC-CCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC
Confidence 99999998888765565554 466655 45789999999999986431 467899999999999998654
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-33 Score=266.22 Aligned_cols=280 Identities=15% Similarity=0.171 Sum_probs=192.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..||+|||||++|+++|..|++.| +|+|||+.+..+ +... ..+.. +.. .....
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--~~~~-----~l~~~-------~~g------------~~~~~ 60 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--YSKP-----MLSHY-------IAG------------FIPRN 60 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--CCST-----THHHH-------HTT------------SSCGG
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--cccc-----hhHHH-------HhC------------CCCHH
Confidence 369999999999999999999999 999999986432 1100 01000 000 00011
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK 166 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~ 166 (433)
++..+..++.++.++ .++++++|+.++++ .+.|+ .++.++.||+||+|||+ .|..|+++| ...+++.....
T Consensus 61 ~~~~~~~~~~~~~~v--~~~~g~~v~~id~~--~~~V~-~~g~~~~~d~lViATGs--~p~~p~i~G--~~~v~~~~~~~ 131 (367)
T 1xhc_A 61 RLFPYSLDWYRKRGI--EIRLAEEAKLIDRG--RKVVI-TEKGEVPYDTLVLATGA--RAREPQIKG--KEYLLTLRTIF 131 (367)
T ss_dssp GGCSSCHHHHHHHTE--EEECSCCEEEEETT--TTEEE-ESSCEEECSEEEECCCE--EECCCCSBT--GGGEECCCSHH
T ss_pred HhccCCHHHHHhCCc--EEEECCEEEEEECC--CCEEE-ECCcEEECCEEEECCCC--CCCCCCCCC--cCCEEEEcCHH
Confidence 111112233455666 47778889888763 35566 56778999999999998 889999988 22344433332
Q ss_pred CCCCC-----CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHH
Q psy2398 167 SPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 241 (433)
Q Consensus 167 ~~~~~-----~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 241 (433)
+...+ ++++++|||+|.+|+|+|..|++.+.+|+++.|.+.. +| . +..+.. .+.+
T Consensus 132 ~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~-~-------------~~~~~~-----~l~~ 191 (367)
T 1xhc_A 132 DADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF-LG-L-------------DEELSN-----MIKD 191 (367)
T ss_dssp HHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC-TT-C-------------CHHHHH-----HHHH
T ss_pred HHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee-cc-C-------------CHHHHH-----HHHH
Confidence 22111 3589999999999999999999999999999988642 22 1 011111 1111
Q ss_pred HHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeCCeEEecCCceeeccEEEEccCCCCC
Q psy2398 242 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRH 319 (433)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~ 319 (433)
.+ ....|+ ....+++++...+.++||+ +++|.||+|+|++|+
T Consensus 192 ~l-----------------------------------~~~gV~i~~~~~v~~i~~~~v~~~~g~-i~~D~vi~a~G~~p~ 235 (367)
T 1xhc_A 192 ML-----------------------------------EETGVKFFLNSELLEANEEGVLTNSGF-IEGKVKICAIGIVPN 235 (367)
T ss_dssp HH-----------------------------------HHTTEEEECSCCEEEECSSEEEETTEE-EECSCEEEECCEEEC
T ss_pred HH-----------------------------------HHCCCEEEcCCEEEEEEeeEEEECCCE-EEcCEEEECcCCCcC
Confidence 11 111343 3556778877789999998 999999999999999
Q ss_pred CCCCCcccccccCCccccccccccCCCCcEEEEcccccc----CChhhHHHHHHHHHHHHHhhhh
Q psy2398 320 FPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 320 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~----~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
.++++...+..++ ++.+++ .+.++.|+||++|||+.. +..++.|..||+.+|.++.|..
T Consensus 236 ~~ll~~~gl~~~~-gi~Vd~-~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~ 298 (367)
T 1xhc_A 236 VDLARRSGIHTGR-GILIDD-NFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGEP 298 (367)
T ss_dssp CHHHHHTTCCBSS-SEECCT-TSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCCCC-CEEECC-CcccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 8877765565543 455554 457889999999999743 3467899999999999999853
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=261.01 Aligned_cols=288 Identities=17% Similarity=0.219 Sum_probs=192.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
++||+|||||++|+++|..|++. +.+|+|||+.+.+++.... . |........
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~-------~-------------------p~~~~~~~~ 56 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCG-------I-------------------PYVVEGLST 56 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcC-------C-------------------ccccCCCCC
Confidence 47999999999999999999998 7899999998765421110 0 000001111
Q ss_pred HHHHHHHH-HHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCCCCC-CCCCceec
Q psy2398 85 HSMMLDYL-RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILH 161 (433)
Q Consensus 85 ~~~~~~~l-~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~ 161 (433)
..++..+. ..+.+++++ .++++++|+.++. +.+.+.+.++ .++.||+||+|||+ .|..|+++| ...+ ++.
T Consensus 57 ~~~~~~~~~~~~~~~~gi--~v~~~~~v~~i~~--~~~~v~~~~g~~~~~~d~lviAtG~--~p~~p~i~G~~~~~-v~~ 129 (449)
T 3kd9_A 57 PDKLMYYPPEVFIKKRGI--DLHLNAEVIEVDT--GYVRVRENGGEKSYEWDYLVFANGA--SPQVPAIEGVNLKG-VFT 129 (449)
T ss_dssp ---------CTHHHHTTC--EEETTCEEEEECS--SEEEEECSSSEEEEECSEEEECCCE--EECCCSCBTTTSTT-EEC
T ss_pred HHHhhhcCHHHHHHhcCc--EEEecCEEEEEec--CCCEEEECCceEEEEcCEEEECCCC--CCCCCCCCCCCCCC-EEE
Confidence 22222222 334467787 5888999988864 5677877776 37899999999998 889999988 3222 222
Q ss_pred cCCCCC-------CCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCch
Q psy2398 162 SMDYKS-------PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 234 (433)
Q Consensus 162 ~~~~~~-------~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 234 (433)
.....+ ...+.+++++|||+|.+|+|+|..+.+.+.+|+++.|++.. +++ .+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~----------------~~~~-- 190 (449)
T 3kd9_A 130 ADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV-LRR----------------SFDK-- 190 (449)
T ss_dssp SCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST-TTT----------------TSCH--
T ss_pred eCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc-chh----------------hcCH--
Confidence 211111 11236889999999999999999999999999999988742 221 0111
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC---eEEecCCceeeccEEE
Q psy2398 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN---IVHFVDDTHIEVDTII 311 (433)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~---~v~~~dG~~~~~D~vi 311 (433)
.+.+.+.+.+... + ++.....+.++.+. ...+.+|.++++|.||
T Consensus 191 ---~~~~~l~~~l~~~-----v-------------------------~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv 237 (449)
T 3kd9_A 191 ---EVTDILEEKLKKH-----V-------------------------NLRLQEITMKIEGEERVEKVVTDAGEYKAELVI 237 (449)
T ss_dssp ---HHHHHHHHHHTTT-----S-------------------------EEEESCCEEEEECSSSCCEEEETTEEEECSEEE
T ss_pred ---HHHHHHHHHHHhC-----c-------------------------EEEeCCeEEEEeccCcEEEEEeCCCEEECCEEE
Confidence 1111111111111 1 33445566666543 2356788889999999
Q ss_pred EccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhhh
Q psy2398 312 YATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 312 ~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|||++|+.++++..++..+ .+++.+++ .+.++.|+||++|||+.. ..+++.|..||+.+|.++.|..
T Consensus 238 ~a~G~~p~~~l~~~~gl~~~~~G~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~ 316 (449)
T 3kd9_A 238 LATGIKPNIELAKQLGVRIGETGAIWTNE-KMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKE 316 (449)
T ss_dssp ECSCEEECCHHHHHTTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred EeeCCccCHHHHHhCCccCCCCCCEEECC-CCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCC
Confidence 99999999888775555553 34566655 457899999999999741 2467889999999999999864
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-32 Score=266.86 Aligned_cols=310 Identities=17% Similarity=0.159 Sum_probs=203.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----Cccc-CCCCCCC--C
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQ-VPDYPMP--D 77 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~--~ 77 (433)
+.++||+|||||++|+++|..|++.|++|+|||+.+.+||.|.... +.++..+.... .+.. +..+..+ .
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g----~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~ 79 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVG----CIPSKALLHSSHMYHEAKHSFANHGVKVSN 79 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHS----HHHHHHHHHHHHHHHHHHHTHHHHTEEESC
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcC----ccchHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 4568999999999999999999999999999999989999987542 12211100000 0000 0000000 0
Q ss_pred ---CCCCCC-CHH----HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCC
Q psy2398 78 ---NYPVYP-NHS----MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 78 ---~~~~~~-~~~----~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~ 147 (433)
.+..+. ... .+.+.+...+++.++ .+.+++.+. + +.+.+.|.+.+| .++.||+||+|||+ .|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~--~~~~~~v~~~~G~~~~i~~d~lIiAtGs--~p~ 152 (470)
T 1dxl_A 80 VEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKV--TYVKGYGKF-V--SPSEISVDTIEGENTVVKGKHIIIATGS--DVK 152 (470)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCEEE-E--ETTEEEECCSSSCCEEEECSEEEECCCE--EEC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-e--cCCEEEEEeCCCceEEEEcCEEEECCCC--CCC
Confidence 000000 011 123334555666677 477776543 3 457788877776 67999999999998 788
Q ss_pred CCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 148 YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 148 ~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
.|+++|.....++++.+...... .+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.. +|.. +
T Consensus 153 ~p~~~g~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~-------------~ 217 (470)
T 1dxl_A 153 SLPGVTIDEKKIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI-VPTM-------------D 217 (470)
T ss_dssp CBTTBCCCSSSEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS-STTS-------------C
T ss_pred CCCCCCCCcccEEeHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc-cccc-------------c
Confidence 88888721123555555444333 4689999999999999999999999999999988642 2211 1
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEec---
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFV--- 300 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~--- 300 (433)
.. +.+.+.+.+. ..++ ++.....+.++... .+.+.
T Consensus 218 ~~---------~~~~l~~~l~----~~gv-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~~ 259 (470)
T 1dxl_A 218 AE---------IRKQFQRSLE----KQGM-------------------------KFKLKTKVVGVDTSGDGVKLTVEPSA 259 (470)
T ss_dssp HH---------HHHHHHHHHH----HSSC-------------------------CEECSEEEEEEECSSSSEEEEEEESS
T ss_pred HH---------HHHHHHHHHH----HcCC-------------------------EEEeCCEEEEEEEcCCeEEEEEEecC
Confidence 11 1111111111 1111 23333455666432 24444
Q ss_pred CC--ceeeccEEEEccCCCCCCCC--CCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 301 DD--THIEVDTIIYATGYNRHFPF--IDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 301 dG--~~~~~D~vi~atG~~~~~~~--l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
+| +++++|.||+|+|++|+.++ ++...+..+ .+++.+++. +.++.|+||++|||+..+...+.|..||+.+|.+
T Consensus 260 ~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~ 338 (470)
T 1dxl_A 260 GGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNER-FSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEY 338 (470)
T ss_dssp SCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTT-CBCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHH
T ss_pred CCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcC-CccCCCCEEEEeccCCCCccHHHHHHHHHHHHHH
Confidence 55 57999999999999999988 444455553 355777665 5689999999999988767788999999999999
Q ss_pred Hhhh
Q psy2398 376 IQAF 379 (433)
Q Consensus 376 i~g~ 379 (433)
+.|.
T Consensus 339 i~g~ 342 (470)
T 1dxl_A 339 LAGK 342 (470)
T ss_dssp HTTS
T ss_pred HcCC
Confidence 9985
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-33 Score=267.27 Aligned_cols=291 Identities=15% Similarity=0.094 Sum_probs=196.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCC--eEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNIN--YDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~--v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
.++||+|||||++|+++|..|++.|.+ |++||+.+..+..... .++... ....
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~--------------l~~~~~-----------~~~~ 62 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPP--------------LSKEYL-----------AREK 62 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGG--------------GGTTTT-----------TTSS
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCccc--------------CCHHHH-----------cCCC
Confidence 457999999999999999999999987 9999998754311000 000000 0000
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSM 163 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~ 163 (433)
...++..+...+..+.++ .++++++|+.++.+ .+.|++.++..+.||+||+|||+ .|..|+++|.-...+.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~--~~~v~~~~g~~~~~d~lvlAtG~--~~~~~~i~g~~~~~v~~~~ 136 (415)
T 3lxd_A 63 TFERICIRPAQFWEDKAV--EMKLGAEVVSLDPA--AHTVKLGDGSAIEYGKLIWATGG--DPRRLSCVGADLAGVHAVR 136 (415)
T ss_dssp CSGGGBSSCHHHHHHTTE--EEEETCCEEEEETT--TTEEEETTSCEEEEEEEEECCCE--ECCCCBTTSSCCBTEECCC
T ss_pred CHHHhccCCHHHHHHCCc--EEEeCCEEEEEECC--CCEEEECCCCEEEeeEEEEccCC--ccCCCCCCCccccCEEEEc
Confidence 011111122334455666 57888899998764 34677888888999999999998 8899999882112222211
Q ss_pred CCCCCC-----CCC-CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 164 DYKSPD-----QIR-NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 164 ~~~~~~-----~~~-~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
...+.. ... +++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+ +++. ++.
T Consensus 137 ~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-l~~~------------~~~--------- 194 (415)
T 3lxd_A 137 TKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRV-LARV------------AGE--------- 194 (415)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST-TTTT------------SCH---------
T ss_pred CHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCch-hhhh------------cCH---------
Confidence 111100 112 789999999999999999999999999999988752 1211 011
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEEecCCceeeccEEEE
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVHFVDDTHIEVDTIIY 312 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~~~dG~~~~~D~vi~ 312 (433)
.+.+.+.+.+. ..++ ++.....|+++... .|.++||+++++|.||+
T Consensus 195 ~~~~~l~~~l~----~~GV-------------------------~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~ 245 (415)
T 3lxd_A 195 ALSEFYQAEHR----AHGV-------------------------DLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIV 245 (415)
T ss_dssp HHHHHHHHHHH----HTTC-------------------------EEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEE
T ss_pred HHHHHHHHHHH----hCCC-------------------------EEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEE
Confidence 11111111111 1111 34445677777532 57889999999999999
Q ss_pred ccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCC-----------hhhHHHHHHHHHHHHHhhhh
Q psy2398 313 ATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-----------LGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~-----------~~~~a~~qa~~~a~~i~g~~ 380 (433)
|||++|+.++++...+..++ ++.++. .+.++.|+||++|||+..+. .++.|..||+.+|++|.|+.
T Consensus 246 a~G~~p~~~l~~~~gl~~~~-gi~vd~-~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 322 (415)
T 3lxd_A 246 GIGIVPCVGALISAGASGGN-GVDVDE-FCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP 322 (415)
T ss_dssp CSCCEESCHHHHHTTCCCSS-SEECCT-TCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCccChHHHHhCCCCcCC-CEEECC-CCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC
Confidence 99999999888766666553 455554 45788999999999986543 35789999999999999874
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-32 Score=266.39 Aligned_cols=307 Identities=19% Similarity=0.188 Sum_probs=197.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----CcccCCCCCCCCC---
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQVPDYPMPDN--- 78 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--- 78 (433)
.++||+|||||++|+++|..|++.|.+|+|||+. .+||+|.+.. |.+...+.... .+.....+.....
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~g----ciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~ 84 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVG----CVPKKVMWYASDLATRVSHANEYGLYQNLPL 84 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHS----HHHHHHHHHHHHHHHHHTTTTTTTBSTTSCC
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccC----cHHHHHHHHHHHHHHHHHhHHhcCccccccc
Confidence 4589999999999999999999999999999997 6899987531 22221110000 0000011111000
Q ss_pred -C-CCCCCHHHHHHH-----------HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCC
Q psy2398 79 -Y-PVYPNHSMMLDY-----------LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQ 143 (433)
Q Consensus 79 -~-~~~~~~~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~ 143 (433)
. ........+.++ +....+..++ .+..+ ++..+ +.+.+.+.+.++. ++.||+||+|||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i--~~~~~~v~~~~g~~~~~~~d~lviAtGs- 158 (479)
T 2hqm_A 85 DKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKV--DVVFG-WARFN--KDGNVEVQKRDNTTEVYSANHILVATGG- 158 (479)
T ss_dssp SGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTE--EEEEE-EEEEC--TTSCEEEEESSSCCEEEEEEEEEECCCE-
T ss_pred ccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-EEEEe--eCCEEEEEeCCCcEEEEEeCEEEEcCCC-
Confidence 0 011122233222 2233334444 23333 34433 3456778777776 7999999999998
Q ss_pred CCCCCC-CCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHH
Q psy2398 144 RVARYP-NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 144 s~p~~p-~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
.|..| +++|. ...+++.++.... ..+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.. +|..
T Consensus 159 -~p~~p~~i~g~--~~~~~~~~~~~l~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~~--------- 224 (479)
T 2hqm_A 159 -KAIFPENIPGF--ELGTDSDGFFRLE-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETV-LRKF--------- 224 (479)
T ss_dssp -EECCCTTSTTG--GGSBCHHHHHHCS-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSS-CTTS---------
T ss_pred -CCCCCCCCCCc--ccccchHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcc-cccc---------
Confidence 88888 88882 1223333222222 24789999999999999999999999999999988652 2321
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC------Ce
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG------NI 296 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~------~~ 296 (433)
+..+.. .+.+.+. ..++ ++.....|+++.+ ..
T Consensus 225 ----d~~~~~-----~l~~~l~--------~~Gv-------------------------~i~~~~~v~~i~~~~~~~~~~ 262 (479)
T 2hqm_A 225 ----DECIQN-----TITDHYV--------KEGI-------------------------NVHKLSKIVKVEKNVETDKLK 262 (479)
T ss_dssp ----CHHHHH-----HHHHHHH--------HHTC-------------------------EEECSCCEEEEEECC-CCCEE
T ss_pred ----CHHHHH-----HHHHHHH--------hCCe-------------------------EEEeCCEEEEEEEcCCCcEEE
Confidence 111111 1111111 0111 3333455666642 25
Q ss_pred EEecCC-ceeeccEEEEccCCCCCCCC-CCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHH
Q psy2398 297 VHFVDD-THIEVDTIIYATGYNRHFPF-IDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR 373 (433)
Q Consensus 297 v~~~dG-~~~~~D~vi~atG~~~~~~~-l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a 373 (433)
|.++|| +++++|.||+|+|++|+..+ ++..++..+ ++++.+++. +.++.|+||++|||...+..++.|..||+.+|
T Consensus 263 v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa 341 (479)
T 2hqm_A 263 IHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEY-QNTNVPNIYSLGDVVGKVELTPVAIAAGRKLS 341 (479)
T ss_dssp EEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTT-CBCSSTTEEECGGGTTSSCCHHHHHHHHHHHH
T ss_pred EEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCC-CccCCCCEEEEEecCCCcccHHHHHHHHHHHH
Confidence 778899 78999999999999999865 555555553 455666655 47899999999999876678889999999999
Q ss_pred HHHhhhh
Q psy2398 374 SYIQAFI 380 (433)
Q Consensus 374 ~~i~g~~ 380 (433)
.+|.|..
T Consensus 342 ~~i~~~~ 348 (479)
T 2hqm_A 342 NRLFGPE 348 (479)
T ss_dssp HHHHSCG
T ss_pred HHhcCCC
Confidence 9998754
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=276.02 Aligned_cols=292 Identities=14% Similarity=0.221 Sum_probs=204.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
.+++|+|||||++|+++|..|++. |.+|+|||+.+.++ |... ..+. . .... ...
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~--~~~~-----~lp~---~-------~~g~-------~~~ 90 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS--FANC-----GLPY---Y-------IGGV-------ITE 90 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS--BCGG-----GHHH---H-------HTTS-------SCC
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc--ccCC-----CCch---h-------hcCc-------CCC
Confidence 357999999999999999999998 89999999988764 1100 0000 0 0000 011
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEccCCCCCCCCCCCCCC-CCCce
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSGY-FSGEI 159 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~-~~g~--~~~~d~vIvAtG~~s~p~~p~i~g~-~~g~~ 159 (433)
....+..++..+++++++ .++++++|+.++.+.+.+.+.. .++. .+.||+||+|||+ .|..|+++|. ....+
T Consensus 91 ~~~~~~~~~~~~~~~~gi--~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~~v 166 (588)
T 3ics_A 91 RQKLLVQTVERMSKRFNL--DIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA--KPIVPSIPGIEEAKAL 166 (588)
T ss_dssp GGGGBSSCHHHHHHHTTC--EEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTTTTCTTE
T ss_pred hHHhhccCHHHHHHhcCc--EEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCC--CCCCCCCCCcccCCCe
Confidence 122344567777888888 5889999999998778777765 3454 6899999999998 8899999982 22234
Q ss_pred eccCCCCCCC-------CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 160 LHSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 160 ~~~~~~~~~~-------~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
++.....+.. ...+++++|||+|.+|+|+|..+++.+.+|+++.+.+. ++|.. +.
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~-------------~~---- 228 (588)
T 3ics_A 167 FTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ-VMPPI-------------DY---- 228 (588)
T ss_dssp EECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SCTTS-------------CH----
T ss_pred EEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc-ccccC-------------CH----
Confidence 4433322211 13578999999999999999999999999999998764 22321 01
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeEEecCCceeeccEE
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIVHFVDDTHIEVDTI 310 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v~~~dG~~~~~D~v 310 (433)
.+.+.+.+.+. ..++ ++.....|+++.. ..|.+++|+++++|.|
T Consensus 229 -----~~~~~l~~~l~----~~GV-------------------------~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~V 274 (588)
T 3ics_A 229 -----EMAAYVHEHMK----NHDV-------------------------ELVFEDGVDALEENGAVVRLKSGSVIQTDML 274 (588)
T ss_dssp -----HHHHHHHHHHH----HTTC-------------------------EEECSCCEEEEEGGGTEEEETTSCEEECSEE
T ss_pred -----HHHHHHHHHHH----HcCC-------------------------EEEECCeEEEEecCCCEEEECCCCEEEcCEE
Confidence 11111111111 0111 3334556777754 6789999999999999
Q ss_pred EEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhh
Q psy2398 311 IYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 311 i~atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g 378 (433)
|+|||++|+.++++..++.. +.+++.+++ .+.++.|+||++|||+.. ...++.|..||+.+|.+|.|
T Consensus 275 i~a~G~~p~~~~l~~~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 275 ILAIGVQPESSLAKGAGLALGVRGTIKVNE-KFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp EECSCEEECCHHHHHTTCCBCGGGCBCCCT-TSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred EEccCCCCChHHHHhcCceEcCCCCEEECC-ccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcC
Confidence 99999999988877655555 345566654 457899999999999841 24667899999999999998
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-32 Score=266.40 Aligned_cols=302 Identities=17% Similarity=0.184 Sum_probs=188.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecC----CCcccCCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP----KFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 83 (433)
+||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+.. |.+...+... ..+.....+.+... . ..
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~g----c~P~k~l~~~a~~~~~~~~~~~~g~~~~-~-~~ 75 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNVG----CVPKKIMFNAASVHDILENSRHYGFDTK-F-SF 75 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHTS----HHHHHHHHHHHHHHHHHHHGGGGTCCCC-C-CC
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCccccccC----CcchHHHHHHHHHHHHHHhhHhcCCccC-C-cc
Confidence 89999999999999999999999999999998 5899987642 2222111000 00000011111100 0 11
Q ss_pred CHHHH-----------HHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE-----------ccCcEEEeCEEEEccC
Q psy2398 84 NHSMM-----------LDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-----------SNGKKKKYDFIAVCNG 141 (433)
Q Consensus 84 ~~~~~-----------~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~-----------~~g~~~~~d~vIvAtG 141 (433)
....+ ...+....++.++ .+..++ +..++ .+.+.+.. .++.++.||+||+|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~id--~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtG 150 (500)
T 1onf_A 76 NLPLLVERRDKYIQRLNNIYRQNLSKDKV--DLYEGT-ASFLS--ENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVG 150 (500)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESC-CCCC----------------------------CBSSEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEee--CCEEEEEeccccccccccCCCceEEEeCEEEECCC
Confidence 22222 2233344455566 355443 22232 23333432 1245689999999999
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhH
Q psy2398 142 AQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ 221 (433)
Q Consensus 142 ~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~ 221 (433)
+ .|..|+++|. ..++++.++..... +++++|||+|.+|+|+|..|++.+.+|+++.|.+.. +|..
T Consensus 151 s--~p~~p~i~G~--~~~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~~-------- 215 (500)
T 1onf_A 151 N--KPVFPPVKGI--ENTISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI-LRKF-------- 215 (500)
T ss_dssp C--CBCCCSCTTG--GGCEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS-CTTS--------
T ss_pred C--CCCCCCCCCC--CcccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc-Cccc--------
Confidence 8 8889999982 13455555544444 789999999999999999999999999999988752 2321
Q ss_pred HhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-----Ce
Q psy2398 222 WMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-----NI 296 (433)
Q Consensus 222 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-----~~ 296 (433)
+..+.. .+.+. +. ..++ ++.....++++.+ ..
T Consensus 216 -----d~~~~~-----~l~~~----l~----~~gv-------------------------~i~~~~~v~~i~~~~~~~~~ 252 (500)
T 1onf_A 216 -----DESVIN-----VLEND----MK----KNNI-------------------------NIVTFADVVEIKKVSDKNLS 252 (500)
T ss_dssp -----CHHHHH-----HHHHH----HH----HTTC-------------------------EEECSCCEEEEEESSTTCEE
T ss_pred -----chhhHH-----HHHHH----HH----hCCC-------------------------EEEECCEEEEEEEcCCceEE
Confidence 011111 11111 11 1111 3334456666642 25
Q ss_pred EEecCCce-eeccEEEEccCCCCCCCC--CCcccccccCCccccccccccCCCCcEEEEcccc-----------------
Q psy2398 297 VHFVDDTH-IEVDTIIYATGYNRHFPF--IDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVN----------------- 356 (433)
Q Consensus 297 v~~~dG~~-~~~D~vi~atG~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~----------------- 356 (433)
+.++||++ +++|.||+|+|++|+.++ ++...+..+.+++.+++. +.++.|+||++|||+
T Consensus 253 v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~ 331 (500)
T 1onf_A 253 IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDEN-QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLY 331 (500)
T ss_dssp EEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTT-CBCSSSSEEECSTTEEEC--------------
T ss_pred EEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCC-cccCCCCEEEEecccccccccccccccccccc
Confidence 67889988 999999999999999864 454455555556766665 468999999999998
Q ss_pred -----------------ccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 357 -----------------AAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 357 -----------------~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
..+.+++.|..||+.+|.+|.|..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~ 372 (500)
T 1onf_A 332 NEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKK 372 (500)
T ss_dssp ----------------CBCCCCHHHHHHHHHHHHHHHHSCT
T ss_pred ccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCC
Confidence 234567889999999999998753
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-32 Score=266.07 Aligned_cols=309 Identities=13% Similarity=0.123 Sum_probs=199.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----ccc-CCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQ-VPDYPMPDNYPV 81 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~ 81 (433)
++||+|||||++|+++|..|++.|++|+|||+.+.+||+|.... |.++..+..... +.. +..+..+.....
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g----~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~ 77 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVG----CIPSKALLHATHLYHDAHANFARYGLMGGEGV 77 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHS----HHHHHHHHHHHHHHHHHHHTHHHHTEECGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcC----cHhHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 37999999999999999999999999999999989999987541 222211100000 000 000000000000
Q ss_pred CCCHHH-----------HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCCC
Q psy2398 82 YPNHSM-----------MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 82 ~~~~~~-----------~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
...... +...+....++.++ .+..++.+ .+ +.+.+.|.+.+| .++.||+||+|||+ .|..
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~~-~i--~~~~~~v~~~~G~~~~~~~d~lviAtG~--~p~~ 150 (468)
T 2qae_A 78 TMDSAKMQQQKERAVKGLTGGVEYLFKKNKV--TYYKGEGS-FE--TAHSIRVNGLDGKQEMLETKKTIIATGS--EPTE 150 (468)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEE-EE--ETTEEEEEETTSCEEEEEEEEEEECCCE--EECC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE-Ee--eCCEEEEEecCCceEEEEcCEEEECCCC--CcCC
Confidence 011122 22233455556666 35555433 33 457788888777 67999999999998 8888
Q ss_pred CCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
|+++|.....++++.++..... .+++++|||+|.+|+|+|..+.+.+.+|+++.|.+. ++|.. +.
T Consensus 151 p~~~g~~~~~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~-------------d~ 215 (468)
T 2qae_A 151 LPFLPFDEKVVLSSTGALALPR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR-CAPTL-------------DE 215 (468)
T ss_dssp BTTBCCCSSSEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTTS-------------CH
T ss_pred CCCCCCCcCceechHHHhhccc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc-ccccC-------------CH
Confidence 8888721123555544443333 478999999999999999999999999999998864 22321 11
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEEec--CC
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFV--DD 302 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~~~--dG 302 (433)
.+.. .+.+.+. . ..++ ++.....|.++.. ..+.+. +|
T Consensus 216 ~~~~-----~l~~~l~---~----~~gv-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~~g 258 (468)
T 2qae_A 216 DVTN-----ALVGALA---K----NEKM-------------------------KFMTSTKVVGGTNNGDSVSLEVEGKNG 258 (468)
T ss_dssp HHHH-----HHHHHHH---H----HTCC-------------------------EEECSCEEEEEEECSSSEEEEEECC--
T ss_pred HHHH-----HHHHHHh---h----cCCc-------------------------EEEeCCEEEEEEEcCCeEEEEEEcCCC
Confidence 1111 1111110 1 0111 2333445566642 234554 67
Q ss_pred --ceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccc-cCChhhHHHHHHHHHHHHH
Q psy2398 303 --THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 303 --~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~-~~~~~~~a~~qa~~~a~~i 376 (433)
+++++|.||+|+|++|+.+++ +...+..+ .+++.+++. +.++.|+||++|||+. .+...+.|..||+.+|.++
T Consensus 259 ~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i 337 (468)
T 2qae_A 259 KRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDH-FETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEIL 337 (468)
T ss_dssp -EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHH
T ss_pred ceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCC-cccCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHH
Confidence 579999999999999999885 33344443 355776655 5789999999999998 6778889999999999999
Q ss_pred hhh
Q psy2398 377 QAF 379 (433)
Q Consensus 377 ~g~ 379 (433)
.|+
T Consensus 338 ~~~ 340 (468)
T 2qae_A 338 AGK 340 (468)
T ss_dssp TTC
T ss_pred cCC
Confidence 985
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-32 Score=266.41 Aligned_cols=309 Identities=15% Similarity=0.095 Sum_probs=200.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cc--cCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NT--QVPDYPMPDNY 79 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~ 79 (433)
.++||+|||||++|+++|..|++.|++|+|||+.+.+||+|.+.. |.++..+..... +. .+..+.++...
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g----~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~ 80 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVG----CIPSKALLNNSHYYHMAHGTDFASRGIEMSE 80 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHS----HHHHHHHHHHHHHHHHHHSSHHHHTTEEESC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccC----ccchHHHHHHHHHHHHhhhhhHhhCccccCC
Confidence 347999999999999999999999999999999989999987642 222111100000 00 00001110000
Q ss_pred CCCCCHHHHH-----------HHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-C-cEEEeCEEEEccCCCCCC
Q psy2398 80 PVYPNHSMML-----------DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-G-KKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 80 ~~~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g-~~~~~d~vIvAtG~~s~p 146 (433)
.......+. ..+....++.++ .+..++. ..+ +.+.+.|++.+ + .++.||+||+|||+ .|
T Consensus 81 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~-~~~--~~~~~~v~~~~gg~~~~~~d~lViAtGs--~p 152 (474)
T 1zmd_A 81 -VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKV--VHVNGYG-KIT--GKNQVTATKADGGTQVIDTKNILIATGS--EV 152 (474)
T ss_dssp -EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEE-EEE--ETTEEEEECTTSCEEEEEEEEEEECCCE--EE
T ss_pred -CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEE-EEe--cCCEEEEEecCCCcEEEEeCEEEECCCC--CC
Confidence 001122222 223445556666 4666643 333 46778888776 4 56999999999998 78
Q ss_pred CCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhh
Q psy2398 147 RYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 226 (433)
Q Consensus 147 ~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 226 (433)
..|+++|.....++++.++..... .+++++|||+|.+|+|+|..|.+.+.+|+++.+.+. ++|+. +
T Consensus 153 ~~p~i~g~~~~~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~------------~ 218 (474)
T 1zmd_A 153 TPFPGITIDEDTIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGH-VGGVG------------I 218 (474)
T ss_dssp CCCTTCCCCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSCSS------------C
T ss_pred CCCCCCCCCcCcEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCc-cCCcc------------c
Confidence 888888821223566655554443 368999999999999999999999999999998864 23311 0
Q ss_pred chhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C---eEEe--
Q psy2398 227 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N---IVHF-- 299 (433)
Q Consensus 227 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~---~v~~-- 299 (433)
+..+.. .+.+. +. ..++ ++.....|.++.. . .+.+
T Consensus 219 ~~~~~~-----~l~~~----l~----~~Gv-------------------------~i~~~~~v~~i~~~~~~~~~v~~~~ 260 (474)
T 1zmd_A 219 DMEISK-----NFQRI----LQ----KQGF-------------------------KFKLNTKVTGATKKSDGKIDVSIEA 260 (474)
T ss_dssp CHHHHH-----HHHHH----HH----HTTC-------------------------EEECSEEEEEEEECTTSCEEEEEEE
T ss_pred CHHHHH-----HHHHH----HH----HCCC-------------------------EEEeCceEEEEEEcCCceEEEEEEe
Confidence 011111 11111 11 0111 2223334555542 1 2332
Q ss_pred ---cCCceeeccEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHH
Q psy2398 300 ---VDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR 373 (433)
Q Consensus 300 ---~dG~~~~~D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a 373 (433)
.+|+++++|.||+|+|++|+.++|. ...+..+ .+++.+++. +.++.|+||++|||+..+.+.+.|..||+.+|
T Consensus 261 ~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa 339 (474)
T 1zmd_A 261 ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTR-FQTKIPNIYAIGDVVAGPMLAHKAEDEGIICV 339 (474)
T ss_dssp TTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHH
T ss_pred cCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcC-CccCCCCEEEeeecCCCCccHHHHHHHHHHHH
Confidence 3567899999999999999998853 3344443 355776665 56899999999999987777889999999999
Q ss_pred HHHhhh
Q psy2398 374 SYIQAF 379 (433)
Q Consensus 374 ~~i~g~ 379 (433)
.++.|.
T Consensus 340 ~~i~~~ 345 (474)
T 1zmd_A 340 EGMAGG 345 (474)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 999986
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-32 Score=268.91 Aligned_cols=308 Identities=13% Similarity=0.139 Sum_probs=203.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecC----CCcccCCCCCCCCCC-
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP----KFNTQVPDYPMPDNY- 79 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~- 79 (433)
+||+|||||++|+++|..|++. |++|+|||+.+ +||+|.... +.++..+... ..+..+..+.++...
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g----~~psk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDD----CVPSKTFIASTGLRTELRRAPHLGFHIDFD 77 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTS----HHHHHHHHHHHHHHHHHTTTTTTTBC----
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcC----ccchHHHHHHHHHHHHHHHHHhCCCccccC
Confidence 7999999999999999999999 99999999988 999887542 2222111100 000111111111000
Q ss_pred CCCCCHHH-----------HHHHHHHHHHHcCCCcceEeCcEEEEEEEe----CCeEEEEEccCc--EEEeCEEEEccCC
Q psy2398 80 PVYPNHSM-----------MLDYLRSYAKKFDVYNHSIFNTEVINLEQY----EDIWEVELSNGK--KKKYDFIAVCNGA 142 (433)
Q Consensus 80 ~~~~~~~~-----------~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~----~~~~~v~~~~g~--~~~~d~vIvAtG~ 142 (433)
........ +..++..++++.++ .+..++ +..++.. ++.+.|.+.+++ .+.||+||+|||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs 154 (499)
T 1xdi_A 78 DAKISLPQIHARVKTLAAAQSADITAQLLSMGV--QVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA 154 (499)
T ss_dssp --CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCC
Confidence 00112222 23334566667777 466664 5555431 256777777776 7999999999998
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHH
Q psy2398 143 QRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 143 ~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
.|..|+++|.....++++.+...... .+++++|||+|.+|+|+|..+.+.+.+|+++.+.+. ++|..
T Consensus 155 --~p~~p~i~g~~~~~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-~l~~~--------- 221 (499)
T 1xdi_A 155 --SPRILPSAQPDGERILTWRQLYDLDA-LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDH-VLPYE--------- 221 (499)
T ss_dssp --EECCCGGGCCCSSSEEEGGGGGGCSS-CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSS-SSCCS---------
T ss_pred --CCCCCCCCCCCcCcEEehhHhhhhhc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-ccccc---------
Confidence 88888888721223555555544433 368999999999999999999999999999998864 22321
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEE
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVH 298 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~ 298 (433)
+..+.. .+.+. +. ..|+ ++.....|+++... .+.
T Consensus 222 ----d~~~~~-----~l~~~----l~----~~GV-------------------------~i~~~~~V~~i~~~~~~v~v~ 259 (499)
T 1xdi_A 222 ----DADAAL-----VLEES----FA----ERGV-------------------------RLFKNARAASVTRTGAGVLVT 259 (499)
T ss_dssp ----SHHHHH-----HHHHH----HH----HTTC-------------------------EEETTCCEEEEEECSSSEEEE
T ss_pred ----CHHHHH-----HHHHH----HH----HCCC-------------------------EEEeCCEEEEEEEeCCEEEEE
Confidence 011111 11111 11 1111 23334556666422 355
Q ss_pred ecCCceeeccEEEEccCCCCCCCC--CCcccccccC-CccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 299 FVDDTHIEVDTIIYATGYNRHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 299 ~~dG~~~~~D~vi~atG~~~~~~~--l~~~~~~~~~-~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
+.+|+++++|.||+|+|++|+.++ ++..++..+. +++.+++. +.++.|+||++|||+..+.+.+.|..||+.+|.+
T Consensus 260 ~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~ 338 (499)
T 1xdi_A 260 MTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRV-SRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYH 338 (499)
T ss_dssp ETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSS-SBCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHH
T ss_pred ECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHH
Confidence 678889999999999999999988 4544555543 55666655 5789999999999998777788999999999999
Q ss_pred Hhhh
Q psy2398 376 IQAF 379 (433)
Q Consensus 376 i~g~ 379 (433)
+.|.
T Consensus 339 i~g~ 342 (499)
T 1xdi_A 339 ALGE 342 (499)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 9986
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-32 Score=263.39 Aligned_cols=305 Identities=15% Similarity=0.203 Sum_probs=199.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----CcccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 82 (433)
++||+|||||++|+++|..|++.|.+|+|||+. .+||+|.... |.++..+.... .+..+..+..+.....
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g----~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~- 76 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVG----CIPSKALISASHRYEQAKHSEEMGIKAENVT- 76 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTS----HHHHHHHHHHHHHHHHHHTCGGGTEECCSCE-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcC----chhhHHHHHHHHHHHHHHHHHhcCcccCCCc-
Confidence 479999999999999999999999999999998 7899886541 22211100000 0000000000000000
Q ss_pred CCHH-----------HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCC
Q psy2398 83 PNHS-----------MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 83 ~~~~-----------~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
.... .+.+++...+++.++ .+..++.+. + +.+.+.|++.++ .++.||+||+|||+ .|..|+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-i--d~~~v~V~~~~G~~~i~~d~lViATGs--~p~~~~ 149 (455)
T 1ebd_A 77 IDFAKVQEWKASVVKKLTGGVEGLLKGNKV--EIVKGEAYF-V--DANTVRVVNGDSAQTYTFKNAIIATGS--RPIELP 149 (455)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHTTTC--EEEESEEEE-E--ETTEEEEEETTEEEEEECSEEEECCCE--EECCBT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-c--cCCeEEEEeCCCcEEEEeCEEEEecCC--CCCCCC
Confidence 1111 133444556666676 466666543 3 467788888776 67999999999998 788888
Q ss_pred CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 151 YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 151 i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
++|. ...+.++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.+.+. ++|.. +..+
T Consensus 150 ~~g~-~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~-------------~~~~ 213 (455)
T 1ebd_A 150 NFKF-SNRILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE-ILSGF-------------EKQM 213 (455)
T ss_dssp TBCC-CSSEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SSTTS-------------CHHH
T ss_pred CCCc-cceEecHHHHhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-ccccc-------------CHHH
Confidence 8771 223555544433333 368999999999999999999999999999998864 22311 0111
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--Ce--EEec---CCc
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NI--VHFV---DDT 303 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~--v~~~---dG~ 303 (433)
.. .+.+. +. ..++ ++.....|.++.+ .. +.+. +|+
T Consensus 214 ~~-----~l~~~----l~----~~gv-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~g~~~ 255 (455)
T 1ebd_A 214 AA-----IIKKR----LK----KKGV-------------------------EVVTNALAKGAEEREDGVTVTYEANGETK 255 (455)
T ss_dssp HH-----HHHHH----HH----HTTC-------------------------EEEESEEEEEEEEETTEEEEEEEETTEEE
T ss_pred HH-----HHHHH----HH----HCCC-------------------------EEEeCCEEEEEEEeCCeEEEEEEeCCcee
Confidence 11 11111 11 1111 2333445555542 22 3443 456
Q ss_pred eeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 304 HIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 304 ~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
++++|.||+|+|++|+.+++ +...+..+ .+++.+++. +.++.|+||++|||+..+.+.+.|..||+.+|.++.|.
T Consensus 256 ~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (455)
T 1ebd_A 256 TIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQ-CRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH 333 (455)
T ss_dssp EEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred EEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 79999999999999999884 44445543 355776665 57899999999999887777889999999999999985
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-32 Score=272.27 Aligned_cols=305 Identities=16% Similarity=0.130 Sum_probs=192.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc-----cCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT-----QVPDYPMPDNYPV 81 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 81 (433)
++||+|||||++|+++|..|++.|++|+|||+.+.+||+|.+.. |++...+..+.... .+..+.......
T Consensus 25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~g----ciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~- 99 (491)
T 3urh_A 25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVG----CIPSKALLHASEMFHQAQHGLEALGVEVANP- 99 (491)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHS----HHHHHHHHHHHHHHHHHHHSSGGGTEECCCC-
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccc----chhhHHHHHHHHHHHHHHhhHhhcCcccCCC-
Confidence 47999999999999999999999999999999999999988652 23322211110000 011111110000
Q ss_pred CCCHHHHHH-----------HHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCCC
Q psy2398 82 YPNHSMMLD-----------YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 82 ~~~~~~~~~-----------~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
......+.. .+....+..++ .+..+. +.. .+.+.+.|.+.+| .++.||+||+|||+ .|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~--~~~~~~~v~~~~g~~~~~~~d~lViATGs--~p-- 170 (491)
T 3urh_A 100 KLNLQKMMAHKDATVKSNVDGVSFLFKKNKI--DGFQGT-GKV--LGQGKVSVTNEKGEEQVLEAKNVVIATGS--DV-- 170 (491)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESE-EEE--CSSSEEEEECTTSCEEEEECSEEEECCCE--EC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEE--ecCCEEEEEeCCCceEEEEeCEEEEccCC--CC--
Confidence 111122222 22333344454 233332 222 2356778877766 46899999999998 33
Q ss_pred CCCCC-C--CCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 149 PNYSG-Y--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 149 p~i~g-~--~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
|.+|| . +.+..+++..........+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+.. +|..
T Consensus 171 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~------------ 237 (491)
T 3urh_A 171 AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI-LGGM------------ 237 (491)
T ss_dssp CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS-SSSS------------
T ss_pred CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc-cccC------------
Confidence 45565 2 455444443333333445789999999999999999999999999999988642 2211
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeee--CC--eEEe
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GN--IVHF 299 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~--~~--~v~~ 299 (433)
+..+.. .+.+. + ....|.+ ...+.++. +. .+.+
T Consensus 238 -d~~~~~-----~l~~~----l-------------------------------~~~gV~v~~~~~v~~i~~~~~~~~v~~ 276 (491)
T 3urh_A 238 -DGEVAK-----QLQRM----L-------------------------------TKQGIDFKLGAKVTGAVKSGDGAKVTF 276 (491)
T ss_dssp -CHHHHH-----HHHHH----H-------------------------------HHTTCEEECSEEEEEEEEETTEEEEEE
T ss_pred -CHHHHH-----HHHHH----H-------------------------------HhCCCEEEECCeEEEEEEeCCEEEEEE
Confidence 011111 11111 1 1112332 33455553 22 2455
Q ss_pred cC---C--ceeeccEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHH
Q psy2398 300 VD---D--THIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQF 371 (433)
Q Consensus 300 ~d---G--~~~~~D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~ 371 (433)
.+ | +++++|.||+|||++|+.++|. ...+..+ .+++.+++. +.++.|+||++|||...+...+.|..||+.
T Consensus 277 ~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~ 355 (491)
T 3urh_A 277 EPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRH-FQTSIAGVYAIGDVVRGPMLAHKAEDEGVA 355 (491)
T ss_dssp EETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHH
T ss_pred EecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCC-CCCCCCCEEEEEecCCCccchhHHHHHHHH
Confidence 53 5 5689999999999999998853 3344443 455666654 578999999999999777888999999999
Q ss_pred HHHHHhhhh
Q psy2398 372 IRSYIQAFI 380 (433)
Q Consensus 372 ~a~~i~g~~ 380 (433)
+|.++.|..
T Consensus 356 aa~~i~g~~ 364 (491)
T 3urh_A 356 VAEIIAGQA 364 (491)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHcCCC
Confidence 999999864
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-33 Score=272.65 Aligned_cols=308 Identities=19% Similarity=0.147 Sum_probs=198.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----Ccc-cCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNT-QVPDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~ 80 (433)
.++||+|||||++|+++|..|++.|++|+|||+.+.+||+|.... |.++..+.... .+. .+..+..+....
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g----~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~ 79 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVG----CIPSKALLNNSHLFHQMHTEAQKRGIDVNGD 79 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHS----HHHHHHHHHHHHHHHHHHHTSGGGTEEECSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceec----cHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 458999999999999999999999999999999889999886542 12211100000 000 000000000000
Q ss_pred CCCCHHHHH-----------HHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cE------EEeCEEEEccC
Q psy2398 81 VYPNHSMML-----------DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KK------KKYDFIAVCNG 141 (433)
Q Consensus 81 ~~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~------~~~d~vIvAtG 141 (433)
......++. ..+...+++.++ .+.+++.+.. +.+.+.|++.+| .+ +.||+||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtG 154 (478)
T 1v59_A 80 IKINVANFQKAKDDAVKQLTGGIELLFKKNKV--TYYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATG 154 (478)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEEEES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEEc---cCCeEEEEecCCCcccccccceEEeCEEEECcC
Confidence 011222222 223444556666 4666765542 456788887666 56 99999999999
Q ss_pred CCCCCCCCCCCC-CCCC-ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCCh
Q psy2398 142 AQRVARYPNYSG-YFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPT 219 (433)
Q Consensus 142 ~~s~p~~p~i~g-~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~ 219 (433)
+ .| +.++| .+.+ .+.++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.|++. ++|..
T Consensus 155 s--~p--~~~~g~~~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~------ 222 (478)
T 1v59_A 155 S--EV--TPFPGIEIDEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ-IGASM------ 222 (478)
T ss_dssp E--EE--CCCTTCCCCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSSSS------
T ss_pred C--CC--CCCCCCCCCCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc-ccccc------
Confidence 8 44 23444 3333 4555555544433 378999999999999999999999999999998875 22211
Q ss_pred hHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----C
Q psy2398 220 PQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----N 295 (433)
Q Consensus 220 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~ 295 (433)
+. .+.+.+.+.+. ..++ ++.....++++.. .
T Consensus 223 -------~~---------~~~~~l~~~l~----~~gv-------------------------~i~~~~~v~~i~~~~~~~ 257 (478)
T 1v59_A 223 -------DG---------EVAKATQKFLK----KQGL-------------------------DFKLSTKVISAKRNDDKN 257 (478)
T ss_dssp -------CH---------HHHHHHHHHHH----HTTC-------------------------EEECSEEEEEEEEETTTT
T ss_pred -------CH---------HHHHHHHHHHH----HCCC-------------------------EEEeCCEEEEEEEecCCC
Confidence 01 11111111111 0111 2222334555542 2
Q ss_pred --eEEec-----CCceeeccEEEEccCCCCCCC--CCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHH
Q psy2398 296 --IVHFV-----DDTHIEVDTIIYATGYNRHFP--FIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGL 365 (433)
Q Consensus 296 --~v~~~-----dG~~~~~D~vi~atG~~~~~~--~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a 365 (433)
.+.+. +|+++++|.||+|+|++|+.+ +++...+..+ .+++.+++. +.++.|+||++|||+..+.+.+.|
T Consensus 258 ~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A 336 (478)
T 1v59_A 258 VVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQ-FNSKFPHIKVVGDVTFGPMLAHKA 336 (478)
T ss_dssp EEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHH
T ss_pred eEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcC-CccCCCCEEEeeccCCCcccHHHH
Confidence 34554 456799999999999999988 6666566654 455777665 568999999999999877778899
Q ss_pred HHHHHHHHHHHhhhh
Q psy2398 366 RLQGQFIRSYIQAFI 380 (433)
Q Consensus 366 ~~qa~~~a~~i~g~~ 380 (433)
..||+.+|.++.|..
T Consensus 337 ~~~g~~aa~~i~~~~ 351 (478)
T 1v59_A 337 EEEGIAAVEMLKTGH 351 (478)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999853
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-32 Score=265.27 Aligned_cols=306 Identities=16% Similarity=0.165 Sum_probs=198.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHh-cCCCeEEEc--------cCCCCCCcccCCCCCCccccceEeecCCC----cccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSE-GNINYDLYE--------MESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPD 72 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~v~e--------~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 72 (433)
.++||+|||||++|+++|..|++ .|++|+||| +...+||+|.+.. |+|...+..... +..+..
T Consensus 6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~g----ciP~k~l~~~a~~~~~~~~~~~ 81 (495)
T 2wpf_A 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVG----CVPKKLMVTGAQYMDHLRESAG 81 (495)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHS----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCC----cchHHHHHHHHHHHHHHhHHHh
Confidence 35899999999999999999999 999999999 3567999987642 333221111000 000111
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHH-----------HHHc-CCCcceEeCcEEEEEEEeCCeEEEEEc---c-----CcEE
Q psy2398 73 YPMPDNYP-VYPNHSMMLDYLRSY-----------AKKF-DVYNHSIFNTEVINLEQYEDIWEVELS---N-----GKKK 131 (433)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~l~~~-----------~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~---~-----g~~~ 131 (433)
+.+....+ ......++.++.+.+ .++. ++ .+..+ ++..++ .. +|++. + +..+
T Consensus 82 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g-~~~~i~--~~--~v~v~~~~~~~~~~~~~~ 154 (495)
T 2wpf_A 82 FGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGL--DFFLG-WGSLES--KN--VVVVRETADPKSAVKERL 154 (495)
T ss_dssp TTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTE--EEEES-EEEEEE--TT--EEEEESSSSTTSCEEEEE
T ss_pred cCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--EEEEe-EEEEee--CC--EEEEeecCCccCCCCeEE
Confidence 11110000 012234444443333 2333 54 34444 344443 33 45544 3 5579
Q ss_pred EeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhcc---CCcEEEEEecCce
Q psy2398 132 KYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYH 208 (433)
Q Consensus 132 ~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~---~~~V~~~~r~~~~ 208 (433)
.||+||+|||+ .|..|+++|. ..++++.++..... .+++++|||+|.+|+|+|..|.+. +.+|+++.|.+.
T Consensus 155 ~~d~lViATGs--~p~~p~i~G~--~~~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~- 228 (495)
T 2wpf_A 155 QADHILLATGS--WPQMPAIPGI--EHCISSNEAFYLPE-PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL- 228 (495)
T ss_dssp EEEEEEECCCE--EECCCCCTTG--GGCEEHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS-
T ss_pred EcCEEEEeCCC--CcCCCCCCCc--cccccHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc-
Confidence 99999999998 8889999882 12444444444333 368999999999999999999999 999999998874
Q ss_pred eecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCC
Q psy2398 209 YYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDD 288 (433)
Q Consensus 209 ~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 288 (433)
++|.+ +..+.. .+.+. +. ..++ ++.....
T Consensus 229 ~l~~~-------------d~~~~~-----~l~~~----l~----~~GV-------------------------~i~~~~~ 257 (495)
T 2wpf_A 229 ILRGF-------------DETIRE-----EVTKQ----LT----ANGI-------------------------EIMTNEN 257 (495)
T ss_dssp SCTTS-------------CHHHHH-----HHHHH----HH----HTTC-------------------------EEEESCC
T ss_pred ccccc-------------CHHHHH-----HHHHH----HH----hCCC-------------------------EEEeCCE
Confidence 22321 011111 11111 11 1111 3444556
Q ss_pred ceeeeC-----CeEEecCCceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCC
Q psy2398 289 IKNLNG-----NIVHFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAG 360 (433)
Q Consensus 289 v~~~~~-----~~v~~~dG~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~ 360 (433)
|+++.. ..|.++||+++++|.||+|+|++|+.++| +...+..+ .+++.+++. +.++.|+||++|||+..+.
T Consensus 258 v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~ 336 (495)
T 2wpf_A 258 PAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEF-SRTNVPNIYAIGDITDRLM 336 (495)
T ss_dssp EEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTT-CBCSSTTEEECGGGGCSCC
T ss_pred EEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCC-CccCCCCEEEEeccCCCcc
Confidence 666642 25778899999999999999999998854 44445544 455666654 5789999999999997667
Q ss_pred hhhHHHHHHHHHHHHHhhhh
Q psy2398 361 LGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 361 ~~~~a~~qa~~~a~~i~g~~ 380 (433)
+++.|..||+.+|.+|.|..
T Consensus 337 l~~~A~~~g~~aa~~i~g~~ 356 (495)
T 2wpf_A 337 LTPVAINEGAALVDTVFGNK 356 (495)
T ss_dssp CHHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999853
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-32 Score=276.19 Aligned_cols=292 Identities=16% Similarity=0.167 Sum_probs=197.1
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+|||||++|+++|..|++. +.+|+|||+.+..+.. .. ..+. . +... .....
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~--~~-----~l~~---~-------~~~~-------~~~~~ 57 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA--NC-----GLPY---H-------ISGE-------IAQRS 57 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC--GG-----GHHH---H-------HTSS-------SCCGG
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc--cc-----CchH---H-------hcCC-------cCChH
Confidence 5999999999999999999998 7899999998866411 00 0000 0 0000 00112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc-cCc--EEEeCEEEEccCCCCCCCCCCCCCCCCCceecc
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHS 162 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~-~g~--~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~ 162 (433)
..+.+++..+.+++++ .++++++|+.++.+.+.+.+... ++. ++.||+||+|||+ .|..|+++|.....+.+.
T Consensus 58 ~~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~ipG~~~~~v~~~ 133 (565)
T 3ntd_A 58 ALVLQTPESFKARFNV--EVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA--APIVPPIPGVDNPLTHSL 133 (565)
T ss_dssp GGBCCCHHHHHHHHCC--EEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTCCSTTEECC
T ss_pred HhhccCHHHHHHhcCc--EEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCC--CCCCCCCCCCCCCCEEEe
Confidence 2334555666777787 58889999999887777777652 233 6899999999998 899999998322223333
Q ss_pred CCCCCCC-------CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchH
Q psy2398 163 MDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 235 (433)
Q Consensus 163 ~~~~~~~-------~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~ 235 (433)
....+.. ...+++|+|||+|.+|+|+|..|.+.+.+|+++.|++. ++|.. +..+..
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~-------------~~~~~~--- 196 (565)
T 3ntd_A 134 RNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ-VMTPV-------------DREMAG--- 196 (565)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SCTTS-------------CHHHHH---
T ss_pred CCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc-cchhc-------------CHHHHH---
Confidence 2221111 13578999999999999999999999999999999874 22311 011111
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC---------------------
Q psy2398 236 TMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--------------------- 294 (433)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--------------------- 294 (433)
.+.+. +. ..++ ++.....++++..
T Consensus 197 --~l~~~----l~----~~GV-------------------------~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 241 (565)
T 3ntd_A 197 --FAHQA----IR----DQGV-------------------------DLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIK 241 (565)
T ss_dssp --HHHHH----HH----HTTC-------------------------EEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTT
T ss_pred --HHHHH----HH----HCCC-------------------------EEEeCCeEEEEeccccccccccccccccccccCC
Confidence 11111 11 0111 2222333333321
Q ss_pred C--eEEecCCceeeccEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc----------CCh
Q psy2398 295 N--IVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGL 361 (433)
Q Consensus 295 ~--~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~ 361 (433)
. .+.+.||+++++|.||+|||++|+.++++..++..+ .+++.++. .+.++.|+||++|||+.. ...
T Consensus 242 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~ 320 (565)
T 3ntd_A 242 GHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNA-MMQTSDPAIYAVGDAVEEQDFVTGQACLVPL 320 (565)
T ss_dssp CEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCT-TCBCSSTTEEECGGGBCEEBTTTCCEECCCC
T ss_pred CcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECC-CcccCCCCEEEeeeeEeeccccCCceeeccc
Confidence 1 466789999999999999999999888765555553 35566665 457899999999999731 235
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q psy2398 362 GDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 362 ~~~a~~qa~~~a~~i~g~~ 380 (433)
++.|..||+.+|++|.|+.
T Consensus 321 ~~~A~~~g~~aa~~i~g~~ 339 (565)
T 3ntd_A 321 AGPANRQGRMAADNMFGRE 339 (565)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 7789999999999999864
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-32 Score=268.16 Aligned_cols=300 Identities=15% Similarity=0.155 Sum_probs=186.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
++||+|||||++|+++|..|++. |.+|+|||+++.++ |... ..+. ....... ... ..++.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~-----gl~~---~~~g~~~------~~~--~~~~~ 64 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGC-----GIPY---YVSGEVS------NIE--SLQAT 64 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--cccc-----ccch---hhcCCCC------chH--Hhccc
Confidence 37999999999999999999998 89999999988753 1110 0000 0000000 000 00111
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEccCCCCCCCCCCCCCCCCCceec
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILH 161 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~-~~g~--~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~ 161 (433)
..++..+...+.+++++ .++++++|+.++.+.+.+.+.. .++. .+.||+||+|||+ .|..|+++|.....+.+
T Consensus 65 ~~~~~~~~~~~~~~~gi--~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~v~~ 140 (472)
T 3iwa_A 65 PYNVVRDPEFFRINKDV--EALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS--KANRPPVEGMDLAGVTP 140 (472)
T ss_dssp ----------------C--EEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCSCTTTTSBTEEE
T ss_pred cchhccCHHHHhhhcCc--EEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC--CcCCCCCCCCCCCCEEE
Confidence 12245566666666777 4788999999988777777765 2244 6899999999998 88999999821222333
Q ss_pred cCCCCCCC-------CCCCCeEEEEcCCCCHHHHHHHHhcc-CCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCc
Q psy2398 162 SMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 233 (433)
Q Consensus 162 ~~~~~~~~-------~~~~~~v~VvG~G~sg~d~a~~l~~~-~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 233 (433)
.....+.. ...+++++|||+|.+|+|+|..+.+. +.+|+++.+.+. ++|+. ++.
T Consensus 141 ~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~-~l~~~------------~~~----- 202 (472)
T 3iwa_A 141 VTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQ-IMPGF------------TSK----- 202 (472)
T ss_dssp CCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSS-SSTTT------------SCH-----
T ss_pred eCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCc-ccccc------------cCH-----
Confidence 22221111 13478999999999999999999999 999999998864 22211 001
Q ss_pred hHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--eEEecCCceeeccE
Q psy2398 234 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHFVDDTHIEVDT 309 (433)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~v~~~dG~~~~~D~ 309 (433)
.+.+.+.+.+. ..++ ++.....|+++.. . .+.+.||+++++|.
T Consensus 203 ----~~~~~l~~~l~----~~GV-------------------------~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~ 249 (472)
T 3iwa_A 203 ----SLSQMLRHDLE----KNDV-------------------------VVHTGEKVVRLEGENGKVARVITDKRTLDADL 249 (472)
T ss_dssp ----HHHHHHHHHHH----HTTC-------------------------EEECSCCEEEEEESSSBEEEEEESSCEEECSE
T ss_pred ----HHHHHHHHHHH----hcCC-------------------------EEEeCCEEEEEEccCCeEEEEEeCCCEEEcCE
Confidence 11111111111 0111 2333456666643 2 26788999999999
Q ss_pred EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhh
Q psy2398 310 IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g 378 (433)
||+|||++|+.++++..++..+ .+++.+++ .+.++.|+||++|||+.. ...++.|..||+.+|++|.|
T Consensus 250 Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~-~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 328 (472)
T 3iwa_A 250 VILAAGVSPNTQLARDAGLELDPRGAIIVDT-RMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLAD 328 (472)
T ss_dssp EEECSCEEECCHHHHHHTCCBCTTCCEECCT-TCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTT
T ss_pred EEECCCCCcCHHHHHhCCccCCCCCCEEECC-CcccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcC
Confidence 9999999999887765455553 45566665 457899999999999832 23567899999999999998
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
..
T Consensus 329 ~~ 330 (472)
T 3iwa_A 329 GD 330 (472)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-32 Score=266.09 Aligned_cols=305 Identities=15% Similarity=0.127 Sum_probs=199.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----CcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 81 (433)
..+||+|||||++|+++|..|++.|++|+|||+.+.+||+|.... +.++..+.... .+..+..+..+... .
T Consensus 5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g----~~psk~ll~~~~~~~~~~~~~~~gi~~~~-~ 79 (482)
T 1ojt_A 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVG----CIPSKALLHNAAVIDEVRHLAANGIKYPE-P 79 (482)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHS----HHHHHHHHHHHHHHHHHHHGGGGTCCCCC-C
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeec----ccchHHHHHHHHHHHHHHHHHhCCcccCC-C
Confidence 358999999999999999999999999999999888999876531 22211100000 00000001111000 0
Q ss_pred CCCHHHHH-----------HHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC------------cEEEeCEEEE
Q psy2398 82 YPNHSMML-----------DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG------------KKKKYDFIAV 138 (433)
Q Consensus 82 ~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g------------~~~~~d~vIv 138 (433)
......+. +.+...+++.++ .+..++.+. .+.+.+.+++.++ .++.||+||+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lVi 154 (482)
T 1ojt_A 80 ELDIDMLRAYKDGVVSRLTGGLAGMAKSRKV--DVIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCII 154 (482)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEEE
Confidence 11222222 223445556666 455555433 3456777776555 5689999999
Q ss_pred ccCCCCCCCCCC-CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCC
Q psy2398 139 CNGAQRVARYPN-YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGK 217 (433)
Q Consensus 139 AtG~~s~p~~p~-i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~ 217 (433)
|||+ .|..|+ ++. ...++++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.+.+. ++|..
T Consensus 155 AtGs--~p~~~~~i~~--~~~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-~l~~~---- 224 (482)
T 1ojt_A 155 AAGS--RVTKLPFIPE--DPRIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-LMQGA---- 224 (482)
T ss_dssp CCCE--EECCCSSCCC--CTTEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS-SSTTS----
T ss_pred CCCC--CCCCCCCCCc--cCcEEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc-ccccc----
Confidence 9999 677776 553 224555554444333 378999999999999999999999999999998875 22321
Q ss_pred ChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeC-
Q psy2398 218 PTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG- 294 (433)
Q Consensus 218 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~- 294 (433)
+. .+.+.+.+.+ ....|.+ ...+.++.+
T Consensus 225 ---------~~---------~~~~~l~~~l-------------------------------~~~gV~i~~~~~v~~i~~~ 255 (482)
T 1ojt_A 225 ---------DR---------DLVKVWQKQN-------------------------------EYRFDNIMVNTKTVAVEPK 255 (482)
T ss_dssp ---------CH---------HHHHHHHHHH-------------------------------GGGEEEEECSCEEEEEEEE
T ss_pred ---------CH---------HHHHHHHHHH-------------------------------HhcCCEEEECCEEEEEEEc
Confidence 01 1111111111 1113333 445666642
Q ss_pred ---CeEEecC----CceeeccEEEEccCCCCCCCCC--CcccccccC-CccccccccccCCCCcEEEEccccccCChhhH
Q psy2398 295 ---NIVHFVD----DTHIEVDTIIYATGYNRHFPFI--DKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDG 364 (433)
Q Consensus 295 ---~~v~~~d----G~~~~~D~vi~atG~~~~~~~l--~~~~~~~~~-~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~ 364 (433)
..+.+.| |+++++|.||+|+|++|+.++| +...+..+. +++.+++. +.++.|+||++|||+..+.+.+.
T Consensus 256 ~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~l~~~ 334 (482)
T 1ojt_A 256 EDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQ-MRTNVPHIYAIGDIVGQPMLAHK 334 (482)
T ss_dssp TTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTT-SBCSSTTEEECGGGTCSSCCHHH
T ss_pred CCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCC-cccCCCCEEEEEcccCCCccHHH
Confidence 2466777 7789999999999999999875 444455543 55766664 57899999999999987777889
Q ss_pred HHHHHHHHHHHHhhhh
Q psy2398 365 LRLQGQFIRSYIQAFI 380 (433)
Q Consensus 365 a~~qa~~~a~~i~g~~ 380 (433)
|..||+.+|.++.|..
T Consensus 335 A~~~g~~aa~~i~g~~ 350 (482)
T 1ojt_A 335 AVHEGHVAAENCAGHK 350 (482)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999999853
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-33 Score=274.73 Aligned_cols=304 Identities=17% Similarity=0.153 Sum_probs=194.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----CcccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 82 (433)
++||+|||||++|+++|..|++.|++|+|||++ .+||+|.+.. |.|+..+.... ....++.+.++... ..
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~ 81 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCARVG----CMPSKLLIAAADASYHASQTDLFGIQVDR-IS 81 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHHHS----HHHHHHHHHHHHHHHHHTCGGGGTEECSE-EE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcccccC----hhcCHHHHHHHHHHHHHhhhhhcCcCCCC-Cc
Confidence 489999999999999999999999999999996 4999986542 33322211110 00111111111000 11
Q ss_pred CCHHHHHHHHHHHHHHcCC----------CcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDV----------YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS 152 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~----------~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~ 152 (433)
....++.+++..+.+++.. ...+..+ ...- .+.++|.+.++.++.||+||+|||+ .|..|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-~a~~----~~~~~v~~~~~~~~~~d~lViATGs--~p~~p~~~ 154 (492)
T 3ic9_A 82 VNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRG-FAKF----LDEHTLQVDDHSQVIAKRIVIATGS--RPNYPEFL 154 (492)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEES-CEEE----EETTEEEETTTEEEEEEEEEECCCE--ECCCCHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEE-EEEE----ecCCEEEEcCCcEEEeCEEEEccCC--CCcCCCCC
Confidence 3345555555544443211 0001111 1111 1234677777778999999999997 88888766
Q ss_pred CCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 153 GYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 153 g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
+.....++++.++..... .+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|.. +.
T Consensus 155 ~~~~~~v~t~~~~~~~~~-~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~~-------------d~---- 215 (492)
T 3ic9_A 155 AAAGSRLLTNDNLFELND-LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV-ANLQ-------------DE---- 215 (492)
T ss_dssp HTTGGGEECHHHHTTCSS-CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC-TTCC-------------CH----
T ss_pred CccCCcEEcHHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc-cccC-------------CH----
Confidence 533334555544444333 3789999999999999999999999999999998752 2221 01
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCC-CeeecCCceeeeC--C--eEEec--CC--c
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPKDDIKNLNG--N--IVHFV--DD--T 303 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~v~~~~~--~--~v~~~--dG--~ 303 (433)
.+.+.+.+.+. .. ++.....++++.. . .+.+. +| .
T Consensus 216 -----~~~~~l~~~l~-------------------------------~~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~ 259 (492)
T 3ic9_A 216 -----EMKRYAEKTFN-------------------------------EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKT 259 (492)
T ss_dssp -----HHHHHHHHHHH-------------------------------TTSEEETTCEEEEEEECSSSEEEEEECTTCCEE
T ss_pred -----HHHHHHHHHHh-------------------------------hCcEEEECCEEEEEEEcCCEEEEEEEeCCCceE
Confidence 11111111111 11 2223344555532 2 24454 77 5
Q ss_pred eeeccEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 304 HIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 304 ~~~~D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
++++|.||+|||++|+.++|+ ...+..+ .+.+.++...+.++.|+||++|||...+.+.+.|..||+.+|.++.+
T Consensus 260 ~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 260 TESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp EEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 799999999999999999854 3345543 44555552566789999999999998778888999999999999987
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-32 Score=263.68 Aligned_cols=287 Identities=13% Similarity=0.103 Sum_probs=191.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+|||||++|+++|..|++.|. +|+|||+.+..+.. . + . .++....... .+.. .
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~--~--~------~----l~~~~l~~~~--~~~~---~--- 59 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQ--R--P------P----LSKAYLKSGG--DPNS---L--- 59 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBC--S--G------G----GGTGGGGSCC--CTTS---S---
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCC--C--c------c----CCHHHHCCCC--CHHH---c---
Confidence 689999999999999999999998 89999998754211 0 0 0 0000000000 0000 0
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
......+..+.++ +++. ++|+.++.+.. .+++.++.++.||+||+|||+ .|..|+++| ... .+.+...
T Consensus 60 ---~~~~~~~~~~~~i--~~~~-~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~--~p~~~~i~g~~~~-~v~~~~~ 128 (404)
T 3fg2_P 60 ---MFRPEKFFQDQAI--ELIS-DRMVSIDREGR--KLLLASGTAIEYGHLVLATGA--RNRMLDVPNASLP-DVLYLRT 128 (404)
T ss_dssp ---BSSCHHHHHHTTE--EEEC-CCEEEEETTTT--EEEESSSCEEECSEEEECCCE--EECCCCSTTTTST-TEECCSS
T ss_pred ---cCCCHHHHHhCCC--EEEE-EEEEEEECCCC--EEEECCCCEEECCEEEEeeCC--CccCCCCCCCCCC-cEEEECC
Confidence 0111233445566 4666 88888876444 677788888999999999998 888999888 322 2222111
Q ss_pred CCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 165 YKSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 165 ~~~~-----~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
..+. ....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+. ++. ++. .+
T Consensus 129 ~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-~~~------------~~~---------~~ 186 (404)
T 3fg2_P 129 LDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM-ARV------------VTP---------EI 186 (404)
T ss_dssp HHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT-TTT------------SCH---------HH
T ss_pred HHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch-hhc------------cCH---------HH
Confidence 1111 11257899999999999999999999999999999886421 111 011 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEEecCCceeeccEEEEcc
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVHFVDDTHIEVDTIIYAT 314 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~~~dG~~~~~D~vi~at 314 (433)
.+.+.+.+. ..++ ++.....|+++... .|.++||+++++|.||+||
T Consensus 187 ~~~l~~~l~----~~GV-------------------------~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~ 237 (404)
T 3fg2_P 187 SSYFHDRHS----GAGI-------------------------RMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGV 237 (404)
T ss_dssp HHHHHHHHH----HTTC-------------------------EEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECC
T ss_pred HHHHHHHHH----hCCc-------------------------EEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECc
Confidence 111111111 1111 33334567777532 5788999999999999999
Q ss_pred CCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCC----------hhhHHHHHHHHHHHHHhhhh
Q psy2398 315 GYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG----------LGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 315 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~----------~~~~a~~qa~~~a~~i~g~~ 380 (433)
|++|+.++++..++..++ ++.++. .+.++.|+||++|||+..+. .+..|..||+.+|.+|.|+.
T Consensus 238 G~~p~~~l~~~~gl~~~~-Gi~vd~-~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 311 (404)
T 3fg2_P 238 GVIPNVEIAAAAGLPTAA-GIIVDQ-QLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA 311 (404)
T ss_dssp CEEECCHHHHHTTCCBSS-SEEECT-TSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC
T ss_pred CCccCHHHHHhCCCCCCC-CEEECC-CcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC
Confidence 999999888766666654 355554 45788999999999986432 36889999999999999874
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=260.02 Aligned_cols=303 Identities=16% Similarity=0.195 Sum_probs=194.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----CcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 81 (433)
+++||+|||||++|+++|..|++.|++|+|||+. .+||+|.+.. |.+...+.... .+.....+.+.... .
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g----ciP~k~l~~~a~~~~~~~~~~~~g~~~~~-~ 76 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVG----CVPKKVMWYASHLAEAVRDAPGFGVQASG-G 76 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHS----HHHHHHHHHHHHHHHHHHHGGGGTBCCC---
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcC----chhHHHHHHHHHHHHHHhhhhhcCcccCC-C
Confidence 4689999999999999999999999999999997 7899987542 22221110000 00000011110000 1
Q ss_pred CCCHHHHHHHH-----------HHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 82 YPNHSMMLDYL-----------RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 82 ~~~~~~~~~~l-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
......+.++. ....++.++ .+..+ ++..++ .. .|++ ++.++.||+||+|||+ .|..|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~--~~--~v~~-~g~~~~~d~lviAtGs--~p~~p~ 146 (463)
T 2r9z_A 77 TLDWPRLVAGRDRYIGAINSFWDGYVERLGI--TRVDG-HARFVD--AH--TIEV-EGQRLSADHIVIATGG--RPIVPR 146 (463)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CEEEEE--TT--EEEE-TTEEEEEEEEEECCCE--EECCCS
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEe-EEEEcc--CC--EEEE-CCEEEEcCEEEECCCC--CCCCCC
Confidence 12223333332 223344455 34444 333343 23 4555 5667999999999998 888999
Q ss_pred CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 151 YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 151 i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
++|. ..++++.++..... .+++++|||+|.+|+|+|..|.+.+.+|+++.+++.. ++.. +..+
T Consensus 147 i~G~--~~~~~~~~~~~~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~-l~~~-------------~~~~ 209 (463)
T 2r9z_A 147 LPGA--ELGITSDGFFALQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL-LFQF-------------DPLL 209 (463)
T ss_dssp CTTG--GGSBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STTS-------------CHHH
T ss_pred CCCc--cceecHHHHhhhhc-cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc-cccc-------------CHHH
Confidence 9882 12333333322222 3689999999999999999999999999999988642 2211 0111
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEEecCCc-ee
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFVDDT-HI 305 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~~~dG~-~~ 305 (433)
.. .+.+. +. ..++ ++.....++++.. ..+.++||+ ++
T Consensus 210 ~~-----~l~~~----l~----~~gv-------------------------~i~~~~~v~~i~~~~~~~~v~~~~G~~~i 251 (463)
T 2r9z_A 210 SA-----TLAEN----MH----AQGI-------------------------ETHLEFAVAALERDAQGTTLVAQDGTRLE 251 (463)
T ss_dssp HH-----HHHHH----HH----HTTC-------------------------EEESSCCEEEEEEETTEEEEEETTCCEEE
T ss_pred HH-----HHHHH----HH----HCCC-------------------------EEEeCCEEEEEEEeCCeEEEEEeCCcEEE
Confidence 11 11111 11 0111 2333455666643 257788999 89
Q ss_pred eccEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 306 EVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 306 ~~D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
++|.||+|||++|+.++|. ...+..+ .+++.+++. +.++.|+||++|||...+...+.|..||+.+|.++.|..
T Consensus 252 ~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 328 (463)
T 2r9z_A 252 GFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAY-QNTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQ 328 (463)
T ss_dssp EESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTT-SBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred EcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCC-CccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998653 2344443 455666655 478999999999998766788899999999999998853
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=262.81 Aligned_cols=303 Identities=17% Similarity=0.197 Sum_probs=198.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----Ccc-cCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNT-QVPDYPMPDNYPV 81 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~ 81 (433)
++||+|||||++|+++|..|++.|++|+|||+. .+||.|.... +.++..+.... .+. .+..+..+ .. .
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g----~~psk~ll~~~~~~~~~~~~~~~~g~~-~~-~ 75 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVG----CIPSKALLRNAELVHIFTKDAKAFGIS-GE-V 75 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHS----HHHHHHHHHHHHHHHHHHHHTTTTTEE-EC-C
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccC----chhhHHHHHHHHHHHHHHHHHHhcCCC-CC-C
Confidence 379999999999999999999999999999998 7888876431 12211100000 000 00011111 00 0
Q ss_pred CCCH-----------HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCCC
Q psy2398 82 YPNH-----------SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 82 ~~~~-----------~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
.... ..+.+.+.+.+++.++ .++.++.+. .+.+.+.+.+.+| .++.||+||+|||+ .|..
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lViAtG~--~~~~ 148 (464)
T 2a8x_A 76 TFDYGIAYDRSRKVAEGRVAGVHFLMKKNKI--TEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAIIATGS--STRL 148 (464)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEECCCE--EECC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEECCCC--CCCC
Confidence 0111 1233344556666666 466555432 2457788888777 67999999999998 7788
Q ss_pred CCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
|+++|. ...++++.+...... .+++++|||+|.+|+|+|..|.+.+.+|+++.|.+. ++|.. +.
T Consensus 149 ~~~~g~-~~~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~-------------~~ 212 (464)
T 2a8x_A 149 VPGTSL-SANVVTYEEQILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR-ALPNE-------------DA 212 (464)
T ss_dssp CTTCCC-BTTEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTTS-------------CH
T ss_pred CCCCCC-CceEEecHHHhhccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc-ccccc-------------CH
Confidence 888871 223555444433333 468999999999999999999999999999998864 33321 11
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEec-CC-
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFV-DD- 302 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~-dG- 302 (433)
.+.. .+.+.+. ..++ ++.....++++.+. .+.+. +|
T Consensus 213 ~~~~-----~l~~~l~--------~~gv-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~g~ 254 (464)
T 2a8x_A 213 DVSK-----EIEKQFK--------KLGV-------------------------TILTATKVESIADGGSQVTVTVTKDGV 254 (464)
T ss_dssp HHHH-----HHHHHHH--------HHTC-------------------------EEECSCEEEEEEECSSCEEEEEESSSC
T ss_pred HHHH-----HHHHHHH--------HcCC-------------------------EEEeCcEEEEEEEcCCeEEEEEEcCCc
Confidence 1111 1111111 0111 23334456666421 24454 67
Q ss_pred -ceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 303 -THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 303 -~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+++++|.||+|+|++|+.+++ +...+..+ .+++.+++. +.++.|+||++|||+..+.+.+.|..||+.+|.++.|
T Consensus 255 ~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 255 AQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDY-MRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp EEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTT-SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred eEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcC-CccCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999885 33344443 356777665 4689999999999998777788999999999999998
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=259.57 Aligned_cols=332 Identities=18% Similarity=0.229 Sum_probs=201.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-----CCeEEEccCCCCCCcccCCCCCCccccceEeec-----------CCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-----INYDLYEMESDLGGVWNSQASCGRVYPSLHLIS-----------PKFNTQV 70 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-----~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 70 (433)
++||+|||||++|+++|..|++.| ++|+|||+.+.+| |.... ..+...+.. +...+.|
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~----~~~~~~~~~~~~~~l~~~~~p~~~~~~ 103 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNT----LVSQSELQISFLKDLVSLRNPTSPYSF 103 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGG----CCSSCBCSSCTTSSSSTTTCTTCTTSH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCC----CCCCCcCCcchhhccccccCCCCCCCh
Confidence 469999999999999999999999 9999999999887 54421 111111111 1111111
Q ss_pred CCCC--------CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe---CCeE--EEEEccCc----EEEe
Q psy2398 71 PDYP--------MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIW--EVELSNGK----KKKY 133 (433)
Q Consensus 71 ~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~---~~~~--~v~~~~g~----~~~~ 133 (433)
..+. ++.+...++.+.++.+|++.++++++. .++++++|+.|+.+ ++.| .|++.++. ++.|
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~ 181 (463)
T 3s5w_A 104 VNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQE--QSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTT 181 (463)
T ss_dssp HHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTT--TEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEE
T ss_pred hHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEe
Confidence 0000 001112456789999999999999886 69999999999986 4555 67776665 7999
Q ss_pred CEEEEccCCCCCCCCCCCCCCCCC--ceeccCCCCCC-CCC-----CCCeEEEEcCCCCHHHHHHHHhcc--CCcEEEEE
Q psy2398 134 DFIAVCNGAQRVARYPNYSGYFSG--EILHSMDYKSP-DQI-----RNKRVLVVGAGNSGCDIAVDASHH--SEKVYHST 203 (433)
Q Consensus 134 d~vIvAtG~~s~p~~p~i~g~~~g--~~~~~~~~~~~-~~~-----~~~~v~VvG~G~sg~d~a~~l~~~--~~~V~~~~ 203 (433)
|+||+|||+ .|.+|+....+.+ .++|+..+... ..+ ++++|+|||+|.+|+|+|.+|++. +.+|++++
T Consensus 182 d~lVlAtG~--~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~ 259 (463)
T 3s5w_A 182 RALVVSPGG--TPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMIL 259 (463)
T ss_dssp SEEEECCCC--EECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred CEEEECCCC--CCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEE
Confidence 999999998 7888863223445 67888776542 333 589999999999999999999998 99999999
Q ss_pred ecCceeecccCCCCChh---------HHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChh-
Q psy2398 204 RRGYHYYPKFIDGKPTP---------QWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ- 273 (433)
Q Consensus 204 r~~~~~~p~~~~~~~~~---------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 273 (433)
|++. ++|... .+.. .++..++...+. .+.+. .... .+. .++.+
T Consensus 260 r~~~-~~p~~~--~~~~~~~~~p~~~~~~~~l~~~~~~-----~~~~~----~~~~--~~~-------------~~~~~~ 312 (463)
T 3s5w_A 260 RASA-LKPADD--SPFVNEVFAPKFTDLIYSREHAERE-----RLLRE----YHNT--NYS-------------VVDTDL 312 (463)
T ss_dssp SSSS-CCBCCC--CHHHHGGGSHHHHHHHHHSCHHHHH-----HHHHH----TGGG--TSS-------------CBCHHH
T ss_pred eCCC-CcCccC--CccchhccChhHHHHHhcCCHHHHH-----HHHHH----hhcc--CCC-------------cCCHHH
Confidence 9886 344321 1100 001111111111 11111 0000 000 00000
Q ss_pred --------hhhcc-cCCCeee--cCCceeeeC--Ce--EEec---CCce--eeccEEEEccCCCCC--CCCCCccccccc
Q psy2398 274 --------ILYHI-GHGDILP--KDDIKNLNG--NI--VHFV---DDTH--IEVDTIIYATGYNRH--FPFIDKEKLEWK 331 (433)
Q Consensus 274 --------~~~~~-~~~~v~~--~~~v~~~~~--~~--v~~~---dG~~--~~~D~vi~atG~~~~--~~~l~~~~~~~~ 331 (433)
+...+ ...++.+ ...|+++.. .. +.+. +|+. +++|.||+|||++|+ .++|+......
T Consensus 313 ~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~- 391 (463)
T 3s5w_A 313 IERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL- 391 (463)
T ss_dssp HHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB-
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh-
Confidence 00001 1123443 334555542 22 5555 7765 899999999999999 67776432211
Q ss_pred CCccccccccccCC----CCcEEEEcccccc-----CChhhHHHHHHHHHHHHHh
Q psy2398 332 LGIPDLFIHIAPRN----LDNIFFFGFVNAA-----AGLGDGLRLQGQFIRSYIQ 377 (433)
Q Consensus 332 ~~~~~~~~~~~~~~----~p~i~~iG~~~~~-----~~~~~~a~~qa~~~a~~i~ 377 (433)
+.+.+..++.... .|+||++|||... +.+-..+..+++.++..+.
T Consensus 392 -g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 392 -GDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp -C--CCCTTSBCCBCTTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred -CCcccCcccccccCCCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence 4555555443332 5679999998742 2233345566665544443
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=260.73 Aligned_cols=303 Identities=14% Similarity=0.099 Sum_probs=195.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecC----CCcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP----KFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (433)
.++||+|||||++|+++|..|++.|++|+|||+ +.+||+|.+.. |.+...+..+ ..+..+..+.+....+
T Consensus 4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~g----cip~k~l~~~~~~~~~~~~~~~~g~~~~~~- 77 (463)
T 4dna_A 4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRG----CVPKKLYVYASQFAEHFEDAAGFGWTVGES- 77 (463)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHS----HHHHHHHHHHHHHHHHHHHGGGGTEEECCC-
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccC----chhhHHHHHHHHHHHHHHHHHhcCcccCCC-
Confidence 458999999999999999999999999999999 67999887532 2222110000 0000011111100000
Q ss_pred CCCHH-----------HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE-ccCcEEEeCEEEEccCCCCCCC-C
Q psy2398 82 YPNHS-----------MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGKKKKYDFIAVCNGAQRVAR-Y 148 (433)
Q Consensus 82 ~~~~~-----------~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~-~~g~~~~~d~vIvAtG~~s~p~-~ 148 (433)
..... .+..++....+..++ .+..+ ++..++ ...+.+ .++..+.||+||+|||+ .|. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~----~~~v~~~~~~~~~~~d~lviAtG~--~p~~~ 148 (463)
T 4dna_A 78 RFDWAKLVAAKEQEIARLEGLYRKGLANAGA--EILDT-RAELAG----PNTVKLLASGKTVTAERIVIAVGG--HPSPH 148 (463)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEES-CEEESS----SSEEEETTTTEEEEEEEEEECCCE--EECCC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEee----CCEEEEecCCeEEEeCEEEEecCC--CcccC
Confidence 11112 223334444455555 23333 333332 235555 46678999999999998 888 8
Q ss_pred CCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
|+++|.. .+.++.++..... .+++++|||+|.+|+|+|..+.+.+.+|+++.+.+... |.. +.
T Consensus 149 p~i~G~~--~~~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l-~~~-------------~~ 211 (463)
T 4dna_A 149 DALPGHE--LCITSNEAFDLPA-LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRF-------------DQ 211 (463)
T ss_dssp TTSTTGG--GCBCHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTS-------------CH
T ss_pred CCCCCcc--ccccHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-ccc-------------CH
Confidence 9999821 2333333333322 37899999999999999999999999999999886422 211 11
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEE-ecCC
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVH-FVDD 302 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~-~~dG 302 (433)
.+.. .+.+. +. ..++ ++.....|+++... .|. +++|
T Consensus 212 ~~~~-----~l~~~----l~----~~Gv-------------------------~i~~~~~v~~i~~~~~~~~~v~~~~~g 253 (463)
T 4dna_A 212 DMRR-----GLHAA----ME----EKGI-------------------------RILCEDIIQSVSADADGRRVATTMKHG 253 (463)
T ss_dssp HHHH-----HHHHH----HH----HTTC-------------------------EEECSCCEEEEEECTTSCEEEEESSSC
T ss_pred HHHH-----HHHHH----HH----HCCC-------------------------EEECCCEEEEEEEcCCCEEEEEEcCCC
Confidence 1111 11111 11 0111 33334566666431 467 7888
Q ss_pred ceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 303 THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 303 ~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+ +++|.||+|||++|+.++| +...+..+ ++++.+++. +.++.|+||++|||+..+.+.+.|..||+.+|.++.|.
T Consensus 254 ~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 254 E-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAF-SRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp E-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTT-CBCSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSS
T ss_pred e-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcC-CCCCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence 8 9999999999999999884 44455553 455666655 46899999999999987778889999999999999986
Q ss_pred h
Q psy2398 380 I 380 (433)
Q Consensus 380 ~ 380 (433)
.
T Consensus 332 ~ 332 (463)
T 4dna_A 332 N 332 (463)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=260.62 Aligned_cols=302 Identities=14% Similarity=0.131 Sum_probs=194.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 82 (433)
++||+|||||++|+++|..|++.|.+|+|||+.+ +||+|.+.. |.++..+..... +..+..+..+ .. ..
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g----~iP~k~l~~~~~~~~~~~~~~~~g~~-~~-~~ 78 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVG----CIPTKALLHAAETLHHLKVAEGFGLK-AK-PE 78 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTS----HHHHHHHHHHHHHHHHHHHHGGGTEE-CC-CE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcC----hHHHHHHHHHHHHHHHHHhHHhcCCC-CC-CC
Confidence 4899999999999999999999999999999987 999987542 222211110000 0000001111 00 01
Q ss_pred CCHHHH-------HHH----HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC-
Q psy2398 83 PNHSMM-------LDY----LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN- 150 (433)
Q Consensus 83 ~~~~~~-------~~~----l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~- 150 (433)
.....+ .++ +...+++.++ .+..++.+ .+ +.+ ++++. +.++.||+||+|||+ .|..|+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~-~~--~~~--~v~v~-g~~~~~d~lViATGs--~p~~p~g 148 (464)
T 2eq6_A 79 LDLKKLGGWRDQVVKKLTGGVGTLLKGNGV--ELLRGFAR-LV--GPK--EVEVG-GERYGAKSLILATGS--EPLELKG 148 (464)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESCEE-EE--ETT--EEEET-TEEEEEEEEEECCCE--EECCBTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEeeeEE-Ec--cCC--EEEEc-cEEEEeCEEEEcCCC--CCCCCCC
Confidence 112222 222 2344555666 45656543 23 234 34444 567999999999998 788775
Q ss_pred CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 151 YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 151 i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
+++ .+.++++.++.......+++++|||+|.+|+|+|..|++.+.+|+++.+.+. ++|.. +..+
T Consensus 149 i~~--~~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~-------------~~~~ 212 (464)
T 2eq6_A 149 FPF--GEDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPE-ILPQG-------------DPET 212 (464)
T ss_dssp BCC--SSSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTTS-------------CHHH
T ss_pred CCC--CCcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCc-ccccc-------------CHHH
Confidence 665 2246666655555443578999999999999999999999999999998864 22211 0111
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--eEEec-C--Cc
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHFV-D--DT 303 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~v~~~-d--G~ 303 (433)
.. .+.+. +. ..++ ++.....+++++. . .+.+. + |+
T Consensus 213 ~~-----~l~~~----l~----~~gV-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~~~g~ 254 (464)
T 2eq6_A 213 AA-----LLRRA----LE----KEGI-------------------------RVRTKTKAVGYEKKKDGLHVRLEPAEGGE 254 (464)
T ss_dssp HH-----HHHHH----HH----HTTC-------------------------EEECSEEEEEEEEETTEEEEEEEETTCCS
T ss_pred HH-----HHHHH----HH----hcCC-------------------------EEEcCCEEEEEEEeCCEEEEEEeecCCCc
Confidence 11 11111 11 0111 2222334555542 2 35565 6 87
Q ss_pred --eeeccEEEEccCCCCCCCCC--Ccccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 304 --HIEVDTIIYATGYNRHFPFI--DKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 304 --~~~~D~vi~atG~~~~~~~l--~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
++++|.||+|+|++|+.+++ +...+.. .++++.+++. +.++.|+||++|||+..+.+.+.|..||+.+|.++.|
T Consensus 255 ~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g 333 (464)
T 2eq6_A 255 GEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNAR-METSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAG 333 (464)
T ss_dssp CEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTT-CBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred eeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcC
Confidence 79999999999999999875 3334444 3455766655 5789999999999998777888999999999999998
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
..
T Consensus 334 ~~ 335 (464)
T 2eq6_A 334 KD 335 (464)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=259.96 Aligned_cols=308 Identities=16% Similarity=0.161 Sum_probs=197.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHh-cCCCeEEEc--------cCCCCCCcccCCCCCCccccceEeecCCC----cccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSE-GNINYDLYE--------MESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPD 72 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~v~e--------~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 72 (433)
.++||+|||||++|+++|..|++ .|.+|+||| +...+||+|.+.. |.|+..+..... +.....
T Consensus 2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~g----ciPsk~l~~~a~~~~~~~~~~~ 77 (490)
T 1fec_A 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVG----CVPKKLMVTGANYMDTIRESAG 77 (490)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHS----HHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCC----cchhhHHHHHHHHHHHHHHHHh
Confidence 35899999999999999999999 999999999 3567999987642 233211110000 000000
Q ss_pred CCCCCCCC-CCCCHHHHHH-----------HHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEE---ccC---cEEEe
Q psy2398 73 YPMPDNYP-VYPNHSMMLD-----------YLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVEL---SNG---KKKKY 133 (433)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~-----------~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~---~~g---~~~~~ 133 (433)
+.+..... .......+.+ ++....++. ++ .+..++ +..++ .+.+.+.. .++ ..+.|
T Consensus 78 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g~-~~~i~--~~~v~v~~~~~~~g~~~~~~~~ 152 (490)
T 1fec_A 78 FGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGL--TFHQGF-GALQD--NHTVLVRESADPNSAVLETLDT 152 (490)
T ss_dssp GTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTE--EEEESE-EEEEE--TTEEEEESSSSTTSCEEEEEEE
T ss_pred cCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEeE-EEEee--CCEEEEEeeccCCCCceEEEEc
Confidence 10000000 0012223332 223333444 55 344443 55553 45555543 255 57999
Q ss_pred CEEEEccCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhcc---CCcEEEEEecCceee
Q psy2398 134 DFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYY 210 (433)
Q Consensus 134 d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~---~~~V~~~~r~~~~~~ 210 (433)
|+||+|||+ .|..|+++|. ..++++.++..... .+++++|||+|.+|+|+|..|.+. +.+|+++.+.+. ++
T Consensus 153 d~lviAtGs--~p~~p~i~g~--~~~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~-~l 226 (490)
T 1fec_A 153 EYILLATGS--WPQHLGIEGD--DLCITSNEAFYLDE-APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM-IL 226 (490)
T ss_dssp EEEEECCCE--EECCCCSBTG--GGCBCHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS-SS
T ss_pred CEEEEeCCC--CCCCCCCCCc--cceecHHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC-cc
Confidence 999999998 8888988882 12333333333332 368999999999999999999999 999999998874 22
Q ss_pred cccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCce
Q psy2398 211 PKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIK 290 (433)
Q Consensus 211 p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 290 (433)
|.. +..+.. .+.+.+. ..++ ++.....+.
T Consensus 227 ~~~-------------d~~~~~-----~l~~~l~--------~~GV-------------------------~i~~~~~v~ 255 (490)
T 1fec_A 227 RGF-------------DSELRK-----QLTEQLR--------ANGI-------------------------NVRTHENPA 255 (490)
T ss_dssp TTS-------------CHHHHH-----HHHHHHH--------HTTE-------------------------EEEETCCEE
T ss_pred ccc-------------CHHHHH-----HHHHHHH--------hCCC-------------------------EEEeCCEEE
Confidence 321 111111 1111111 0111 333455666
Q ss_pred eeeC-----CeEEecCCceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChh
Q psy2398 291 NLNG-----NIVHFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLG 362 (433)
Q Consensus 291 ~~~~-----~~v~~~dG~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~ 362 (433)
++.. ..|.++||+++++|.||+|+|++|+.++| +..++..+ .+++.+++. +.++.|+||++|||+..+..+
T Consensus 256 ~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~-~~t~~~~IyA~GD~~~~~~l~ 334 (490)
T 1fec_A 256 KVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAY-SKTNVDNIYAIGDVTDRVMLT 334 (490)
T ss_dssp EEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTT-CBCSSTTEEECGGGGCSCCCH
T ss_pred EEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCC-CccCCCCEEEEeccCCCccCH
Confidence 6642 25678899899999999999999998854 44445554 456666655 578999999999999766788
Q ss_pred hHHHHHHHHHHHHHhhhh
Q psy2398 363 DGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 363 ~~a~~qa~~~a~~i~g~~ 380 (433)
+.|..||+.+|.+|.|..
T Consensus 335 ~~A~~~g~~aa~~i~g~~ 352 (490)
T 1fec_A 335 PVAINEGAAFVDTVFANK 352 (490)
T ss_dssp HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 899999999999999853
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-31 Score=251.54 Aligned_cols=289 Identities=17% Similarity=0.167 Sum_probs=195.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
.++||+|||||++|+++|..|++.| .+|+++|++. |+.|... .++. ......
T Consensus 3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~-----~l~~-------------------~~~~~~ 56 (384)
T 2v3a_A 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKP-----MLST-------------------GFSKNK 56 (384)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGG-----GGGG-------------------TTTTTC
T ss_pred CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcc-----cccH-------------------HHhCCC
Confidence 4589999999999999999999998 4689999865 3222211 0000 000112
Q ss_pred CHHHHH-HHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceecc
Q psy2398 84 NHSMML-DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHS 162 (433)
Q Consensus 84 ~~~~~~-~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~ 162 (433)
...++. .++..+++++++ .+.++++|..++.+. ++|++.+ ..+.||+||+|||+ .|..|+++|.....++++
T Consensus 57 ~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~--~~v~~~~-~~~~~d~lviAtG~--~p~~p~i~g~~~~~v~~~ 129 (384)
T 2v3a_A 57 DADGLAMAEPGAMAEQLNA--RILTHTRVTGIDPGH--QRIWIGE-EEVRYRDLVLAWGA--EPIRVPVEGDAQDALYPI 129 (384)
T ss_dssp CHHHHEEECHHHHHHHTTC--EEECSCCCCEEEGGG--TEEEETT-EEEECSEEEECCCE--EECCCCCBSTTTTCEEEC
T ss_pred CHHHhhccCHHHHHHhCCc--EEEeCCEEEEEECCC--CEEEECC-cEEECCEEEEeCCC--CcCCCCCCCcCcCCEEEE
Confidence 233332 245666677777 477788888887643 3566654 46999999999998 888999988322345554
Q ss_pred CCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 163 MDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 163 ~~~~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
..+.+.. ...+++++|||+|.+|+|+|..+.+.+.+|+++.+.+. ++++. ++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~~~~~------------~~~--------- 187 (384)
T 2v3a_A 130 NDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQ-VMPGL------------LHP--------- 187 (384)
T ss_dssp SSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-SSTTT------------SCH---------
T ss_pred CCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc-hhhcc------------cCH---------
Confidence 4432211 12378999999999999999999999999999998764 22211 011
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--eEEecCCceeeccEEEEc
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHFVDDTHIEVDTIIYA 313 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~v~~~dG~~~~~D~vi~a 313 (433)
.+.+.+.+.+. ..++ ++.....+.++.. . .+.+.||+++++|.||+|
T Consensus 188 ~~~~~l~~~l~----~~gv-------------------------~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a 238 (384)
T 2v3a_A 188 AAAKAVQAGLE----GLGV-------------------------RFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSA 238 (384)
T ss_dssp HHHHHHHHHHH----TTTC-------------------------EEEESCCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred HHHHHHHHHHH----HcCC-------------------------EEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEC
Confidence 11111111111 1111 3344556666642 2 567889999999999999
Q ss_pred cCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC----ChhhHHHHHHHHHHHHHhhhh
Q psy2398 314 TGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 314 tG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|++|+.++++...+..+++ +.++.. +.++.|+||++|||+... ..+..|..||+.+|.+|.|..
T Consensus 239 ~G~~p~~~l~~~~g~~~~~g-i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~ 307 (384)
T 2v3a_A 239 VGLRPRTELAFAAGLAVNRG-IVVDRS-LRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNP 307 (384)
T ss_dssp SCEEECCHHHHHTTCCBSSS-EEECTT-CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCcCHHHHHHCCCCCCCC-EEECCC-CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCC
Confidence 99999988776555655544 666554 578999999999998521 246678999999999999863
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=259.83 Aligned_cols=304 Identities=18% Similarity=0.143 Sum_probs=197.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----CcccCCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 83 (433)
+||+|||||++|+++|..|++.|++|+|||+.+.+||+|.... |.++..+.... .+.. ..+..+... ...
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g----~~p~k~l~~~~~~~~~~~~-~~~g~~~~~-~~~ 75 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVG----CIPSKALLETTERIYEAKK-GLLGAKVKG-VEL 75 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHS----HHHHHHHHHHHHHHHHHHH-CCTTEEECC-EEE
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceec----chhHHHHHHHHHHHHHHhh-hcCCcccCC-Ccc
Confidence 7999999999999999999999999999999988999987542 22221110000 0000 001100000 001
Q ss_pred CHHHHH-----------HHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCC
Q psy2398 84 NHSMML-----------DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS 152 (433)
Q Consensus 84 ~~~~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~ 152 (433)
....+. ..+...+++.++ .+..++.+ .+ +.+.+.|.+ ++.++.||+||+|||+ .|..|+++
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~~-~i--~~~~~~v~~-~g~~~~~d~lviAtG~--~p~~~~~~ 147 (455)
T 2yqu_A 76 DLPALMAHKDKVVQANTQGVEFLFKKNGI--ARHQGTAR-FL--SERKVLVEE-TGEELEARYILIATGS--APLIPPWA 147 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCEE-ES--SSSEEEETT-TCCEEEEEEEEECCCE--EECCCTTB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEE-Ee--cCCeEEEee-CCEEEEecEEEECCCC--CCCCCCCC
Confidence 122222 223444555566 35555433 22 345566655 5678999999999998 78888888
Q ss_pred CCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 153 GYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 153 g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
|.....++++.++..... .+++++|||+|.+|+|+|..|.+.+.+|+++.+++.. +|.. +..+..
T Consensus 148 g~~~~~v~~~~~~~~~~~-~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~-l~~~-------------~~~~~~ 212 (455)
T 2yqu_A 148 QVDYERVVTSTEALSFPE-VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI-LPTM-------------DLEVSR 212 (455)
T ss_dssp CCCSSSEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-CTTS-------------CHHHHH
T ss_pred CCCcCcEechHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc-cccc-------------CHHHHH
Confidence 721224556555544433 3689999999999999999999999999999988642 2311 011111
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCe--EEecCCceeecc
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNI--VHFVDDTHIEVD 308 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~--v~~~dG~~~~~D 308 (433)
.+.+.+. ..++ ++.....+++++ +.. +.+++|+++++|
T Consensus 213 -----~l~~~l~--------~~Gv-------------------------~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D 254 (455)
T 2yqu_A 213 -----AAERVFK--------KQGL-------------------------TIRTGVRVTAVVPEAKGARVELEGGEVLEAD 254 (455)
T ss_dssp -----HHHHHHH--------HHTC-------------------------EEECSCCEEEEEEETTEEEEEETTSCEEEES
T ss_pred -----HHHHHHH--------HCCC-------------------------EEEECCEEEEEEEeCCEEEEEECCCeEEEcC
Confidence 1111111 0011 333345666664 223 455688899999
Q ss_pred EEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 309 TIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 309 ~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
.||+|||++|+.+++ +...+... .+.+.+++. +.++.|+||++||+...+.+.+.|..||+.+|.++.|.
T Consensus 255 ~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 327 (455)
T 2yqu_A 255 RVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEH-LRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRG 327 (455)
T ss_dssp EEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEECcCCCcCCCCCChhhcCCccCCCCcEeECCC-cccCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCC
Confidence 999999999998874 43344443 355666655 56889999999999987777889999999999999985
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=256.65 Aligned_cols=305 Identities=16% Similarity=0.157 Sum_probs=194.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecC----CCcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP----KFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (433)
..+||+|||||++|+++|..|++.|++|+|||+ ..+||+|.+.. |.+...+... ..+..+..+.+....+
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~g----cip~k~l~~~a~~~~~~~~~~~~g~~~~~~- 98 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRG----CVPKKLYFYASQYAQEFSKSIGFGWKYADP- 98 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHS----HHHHHHHHHHHHHHHHHHHHGGGTBCCCCC-
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccC----ccccHHHHHHHHHHHHHHHHHhCCcccCCC-
Confidence 457999999999999999999999999999999 67999887642 2222111100 0000011111110001
Q ss_pred CCCHH-----------HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc-cCcEEEeCEEEEccCCCCCCC-C
Q psy2398 82 YPNHS-----------MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQRVAR-Y 148 (433)
Q Consensus 82 ~~~~~-----------~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~-~g~~~~~d~vIvAtG~~s~p~-~ 148 (433)
..... .+.+++....+..++ .+..+ .+..++ .. .+.+. ++..+.||+||+|||+ .|. .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~i~--~~--~v~v~~~~~~~~~d~lviAtG~--~p~~~ 169 (484)
T 3o0h_A 99 IFNWEKLVAAKNKEISRLEGLYREGLQNSNV--HIYES-RAVFVD--EH--TLELSVTGERISAEKILIATGA--KIVSN 169 (484)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CEEEEE--TT--EEEETTTCCEEEEEEEEECCCE--EECCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-EEEEee--CC--EEEEecCCeEEEeCEEEEccCC--CcccC
Confidence 11111 233334444555565 24333 444443 23 45554 6678999999999998 788 8
Q ss_pred CCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
|+++|. ..+.++..+..... .+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.. ++.. +.
T Consensus 170 p~i~G~--~~~~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~-------------~~ 232 (484)
T 3o0h_A 170 SAIKGS--DLCLTSNEIFDLEK-LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI-LRNF-------------DY 232 (484)
T ss_dssp --CBTG--GGSBCTTTGGGCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STTS-------------CH
T ss_pred CCCCCc--cccccHHHHHhHHh-cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc-cccc-------------CH
Confidence 888881 12333333333322 4789999999999999999999999999999988642 2211 11
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEecCCce
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFVDDTH 304 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~dG~~ 304 (433)
.+.. .+.+.+.+ .++ ++.....|+++... .+.+.+|++
T Consensus 233 ~~~~-----~l~~~l~~--------~Gv-------------------------~i~~~~~V~~i~~~~~~v~v~~~~g~~ 274 (484)
T 3o0h_A 233 DLRQ-----LLNDAMVA--------KGI-------------------------SIIYEATVSQVQSTENCYNVVLTNGQT 274 (484)
T ss_dssp HHHH-----HHHHHHHH--------HTC-------------------------EEESSCCEEEEEECSSSEEEEETTSCE
T ss_pred HHHH-----HHHHHHHH--------CCC-------------------------EEEeCCEEEEEEeeCCEEEEEECCCcE
Confidence 1111 11111110 011 23334566666432 577889999
Q ss_pred eeccEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhhc
Q psy2398 305 IEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR 381 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~ 381 (433)
+++|.||+|||++|+..+|. ...+..+ .+++.++.. +.++.|+||++|||+..+.+.+.|..||+.+|.++.|...
T Consensus 275 i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~ 353 (484)
T 3o0h_A 275 ICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEK-MTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTS 353 (484)
T ss_dssp EEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC---
T ss_pred EEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCC-CCCCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999998854 3344443 355666544 5689999999999998777888999999999999998643
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=258.46 Aligned_cols=303 Identities=19% Similarity=0.168 Sum_probs=193.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cc-cCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NT-QVPDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~ 80 (433)
.++||+|||||++|+++|..|++.|.+|+|||+. .+||+|.+.. |.+...+..... +. ....+.++...
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g----ciP~k~l~~~a~~~~~~~~~~~~~g~~~~~- 76 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVG----CVPKKVMWHAAQIREAIHMYGPDYGFDTTI- 76 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHS----HHHHHHHHHHHHHHHHHHTTGGGGTEEEEE-
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccC----ccChHHHHHHHHHHHHHHHHHHhcCccCCC-
Confidence 4589999999999999999999999999999997 7899987531 222211100000 00 00000000000
Q ss_pred CCCCHHHHHHH-----------HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 81 VYPNHSMMLDY-----------LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 81 ~~~~~~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.......+.++ +....++.++ .+..++ ++.++ .. .|.+ ++..+.||+||+|||+ .|..|
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~i~--~~--~v~~-~g~~~~~d~lviAtGs--~p~~p 146 (450)
T 1ges_A 77 NKFNWETLIASRTAYIDRIHTSYENVLGKNNV--DVIKGF-ARFVD--AK--TLEV-NGETITADHILIATGG--RPSHP 146 (450)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESC-CEEEE--TT--EEEE-TTEEEEEEEEEECCCE--EECCC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEec--CC--EEEE-CCEEEEeCEEEECCCC--CCCCC
Confidence 01112223222 2233344555 344443 33443 33 4545 5677999999999998 88899
Q ss_pred CCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 150 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 150 ~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
+++|. ....++.++..... .+++++|||+|.+|+|+|..|++.+.+|+++.+.+.. +|.. +..
T Consensus 147 ~i~g~--~~~~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~-------------~~~ 209 (450)
T 1ges_A 147 DIPGV--EYGIDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP-LPSF-------------DPM 209 (450)
T ss_dssp CSTTG--GGSBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STTS-------------CHH
T ss_pred CCCCc--cceecHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch-hhhh-------------hHH
Confidence 99882 12233333322222 3689999999999999999999999999999987642 2211 111
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-----CeEEecCCce
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-----NIVHFVDDTH 304 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-----~~v~~~dG~~ 304 (433)
+.. .+.+.+. ..++ ++.....+.++.. ..+.++||++
T Consensus 210 ~~~-----~l~~~l~--------~~Gv-------------------------~i~~~~~v~~i~~~~~~~~~v~~~~g~~ 251 (450)
T 1ges_A 210 ISE-----TLVEVMN--------AEGP-------------------------QLHTNAIPKAVVKNTDGSLTLELEDGRS 251 (450)
T ss_dssp HHH-----HHHHHHH--------HHSC-------------------------EEECSCCEEEEEECTTSCEEEEETTSCE
T ss_pred HHH-----HHHHHHH--------HCCC-------------------------EEEeCCEEEEEEEeCCcEEEEEECCCcE
Confidence 111 1111111 0111 2333445666642 2577889999
Q ss_pred eeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 305 IEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+++|.||+|+|++|+.++| +...+..+ .+++.+++.+ .++.|+||++|||...+..++.|..||+.+|.+|.|..
T Consensus 252 i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 329 (450)
T 1ges_A 252 ETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ-NTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNK 329 (450)
T ss_dssp EEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred EEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCC-ccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999865 33344443 4556666654 78999999999998766788899999999999998853
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-31 Score=258.82 Aligned_cols=305 Identities=17% Similarity=0.180 Sum_probs=193.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCc----ccCCCC-CCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFN----TQVPDY-PMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~ 80 (433)
.++||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+.. |+++..+...... ...+.+ ..+....
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g----~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVG----CVPSKIMIRAAHIAHLRRESPFDGGIAATVP 77 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHS----HHHHHHHHHHHHHHHHHHCCTTTTTSCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCC----ccchHHHHHHHHHHHHHhhhhhcCCccCCCC
Confidence 4689999999999999999999999999999998 7999987642 2222111000000 000110 0110001
Q ss_pred CCCCHHHHH-------HHHH-----HHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCC
Q psy2398 81 VYPNHSMML-------DYLR-----SYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 81 ~~~~~~~~~-------~~l~-----~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~ 145 (433)
......+. ++++ ...++. ++ .+..+ ++..++ .+.+.|.+.+| .++.||+||+|||+ .
T Consensus 78 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~g-~~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs--~ 149 (467)
T 1zk7_A 78 -TIDRSKLLAQQQARVDELRHAKYEGILGGNPAI--TVVHG-EARFKD--DQSLTVRLNEGGERVVMFDRCLVATGA--S 149 (467)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTE--EEEEE-EEEEEE--TTEEEEEETTSSEEEEECSEEEECCCE--E
T ss_pred -ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCe--EEEEE-EEEEcc--CCEEEEEeCCCceEEEEeCEEEEeCCC--C
Confidence 11122222 2232 122222 33 23322 344443 56788888777 67999999999997 8
Q ss_pred CCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 146 ARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 146 p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
|..|+++|.....++++.+...... .+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.. +| .
T Consensus 150 p~~p~i~G~~~~~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~-~------------ 214 (467)
T 1zk7_A 150 PAVPPIPGLKESPYWTSTEALASDT-IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLF-FR-E------------ 214 (467)
T ss_dssp ECCCCCTTTTTSCCBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT-TT-S------------
T ss_pred CCCCCCCCCCcCceecHHHHhcccc-cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc-CC-C------------
Confidence 8999999821112344433333222 3789999999999999999999999999999988642 22 1
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC--eEEecC
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN--IVHFVD 301 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~--~v~~~d 301 (433)
+. .+.+.+.+.+. ..++ ++.....|.++. +. .+.++
T Consensus 215 -~~---------~~~~~l~~~l~----~~Gv-------------------------~i~~~~~v~~i~~~~~~~~v~~~- 254 (467)
T 1zk7_A 215 -DP---------AIGEAVTAAFR----AEGI-------------------------EVLEHTQASQVAHMDGEFVLTTT- 254 (467)
T ss_dssp -CH---------HHHHHHHHHHH----HTTC-------------------------EEETTCCEEEEEEETTEEEEEET-
T ss_pred -CH---------HHHHHHHHHHH----hCCC-------------------------EEEcCCEEEEEEEeCCEEEEEEC-
Confidence 01 11111111111 0111 233344566654 22 24444
Q ss_pred CceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 302 DTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 302 G~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+.++++|.||+|+|++|+..++ +...+..+ ++.+.+++. +.++.|+||++|||+..+...+.|..||+.+|.++.+
T Consensus 255 ~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 333 (467)
T 1zk7_A 255 HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQG-MRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTG 333 (467)
T ss_dssp TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTT-CBCSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTT
T ss_pred CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 5679999999999999998764 33344443 345666554 5789999999999998777788999999999999987
Q ss_pred h
Q psy2398 379 F 379 (433)
Q Consensus 379 ~ 379 (433)
.
T Consensus 334 ~ 334 (467)
T 1zk7_A 334 G 334 (467)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=262.92 Aligned_cols=308 Identities=16% Similarity=0.138 Sum_probs=192.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC--------CCCCcccCCCCCCccccceEeecCCC----cccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES--------DLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDY 73 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~--------~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 73 (433)
..+||+|||||++|+++|..|++.|.+|+|||+.+ .+||+|.+.. |.|...+..+.. ...+..+
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~G----ciPsk~l~~~~~~~~~~~~~~~~ 106 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVG----CIPKKLMHQAALLGQALQDSRNY 106 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHS----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcC----ccchHHHHHHHHHHHHHHHHHhc
Confidence 35899999999999999999999999999999854 6899887652 333222111100 0011111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-----------HHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEcc
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYA-----------KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCN 140 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAt 140 (433)
..............+.++.+.+. +..++ .+ +...+..++ .+.+.|.+.+|+ ++.||+||+||
T Consensus 107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV--~~-i~g~a~~~d--~~~v~v~~~~g~~~~i~~d~lViAT 181 (519)
T 3qfa_A 107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV--VY-ENAYGQFIG--PHRIKATNNKGKEKIYSAERFLIAT 181 (519)
T ss_dssp TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ECSEEEEEE--TTEEEEECTTCCCCEEEEEEEEECC
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EE-EEEEEEEee--CCEEEEEcCCCCEEEEECCEEEEEC
Confidence 11111111233444444444333 23344 12 233444433 466777776664 79999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChh
Q psy2398 141 GAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTP 220 (433)
Q Consensus 141 G~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~ 220 (433)
|+ .|..|+++|. ...++++.++..... ..++++|||+|.+|+|+|..|++.+.+|+++.|+. +++.+
T Consensus 182 Gs--~p~~p~i~G~-~~~~~t~~~~~~l~~-~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~--~l~~~------- 248 (519)
T 3qfa_A 182 GE--RPRYLGIPGD-KEYCISSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI--LLRGF------- 248 (519)
T ss_dssp CE--EECCCCCTTH-HHHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--SSTTS-------
T ss_pred CC--CcCCCCCCCc-cCceEcHHHHhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc--ccccC-------
Confidence 98 8999999981 112334434433333 35679999999999999999999999999999752 33321
Q ss_pred HHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCC---ceeeeC---
Q psy2398 221 QWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDD---IKNLNG--- 294 (433)
Q Consensus 221 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---v~~~~~--- 294 (433)
+..+.. .+.+. +. ..++ ++..... ++...+
T Consensus 249 ------d~~~~~-----~~~~~----l~----~~GV-------------------------~v~~~~~v~~v~~~~~~~~ 284 (519)
T 3qfa_A 249 ------DQDMAN-----KIGEH----ME----EHGI-------------------------KFIRQFVPIKVEQIEAGTP 284 (519)
T ss_dssp ------CHHHHH-----HHHHH----HH----HTTC-------------------------EEEESEEEEEEEEEECCTT
T ss_pred ------CHHHHH-----HHHHH----HH----HCCC-------------------------EEEeCCeEEEEEEccCCCC
Confidence 011111 11111 11 0111 2222222 333332
Q ss_pred Ce--EE--ecCCc---eeeccEEEEccCCCCCCCCC--Cccccccc--CCccccccccccCCCCcEEEEcccc-ccCChh
Q psy2398 295 NI--VH--FVDDT---HIEVDTIIYATGYNRHFPFI--DKEKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVN-AAAGLG 362 (433)
Q Consensus 295 ~~--v~--~~dG~---~~~~D~vi~atG~~~~~~~l--~~~~~~~~--~~~~~~~~~~~~~~~p~i~~iG~~~-~~~~~~ 362 (433)
.. +. ..+|. ++++|.||+|||++|+.++| +...+..+ .+++.+++. +.++.|+||++|||. ..+...
T Consensus 285 ~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~-~~Ts~~~IyA~GD~~~g~~~~~ 363 (519)
T 3qfa_A 285 GRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDE-EQTNVPYIYAIGDILEDKVELT 363 (519)
T ss_dssp CEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTT-SBCSSTTEEECGGGBSSSCCCH
T ss_pred ceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCC-CccCCCCEEEEEeccCCCCccH
Confidence 22 22 24553 46899999999999999874 44445553 456776665 578999999999998 446778
Q ss_pred hHHHHHHHHHHHHHhhhh
Q psy2398 363 DGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 363 ~~a~~qa~~~a~~i~g~~ 380 (433)
+.|..||+.+|.+|.|..
T Consensus 364 ~~A~~~g~~aa~~i~g~~ 381 (519)
T 3qfa_A 364 PVAIQAGRLLAQRLYAGS 381 (519)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 899999999999998764
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=262.40 Aligned_cols=308 Identities=17% Similarity=0.183 Sum_probs=195.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC-------C--CCCCcccCCCCCCccccceEeecCCC----cccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME-------S--DLGGVWNSQASCGRVYPSLHLISPKF----NTQVPD 72 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~-------~--~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 72 (433)
..+||+|||||++|+++|..|++.|.+|+|||+. . .+||+|.+.. |.|+..+..+.. ......
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~g----ciPsk~l~~~~~~~~~~~~~~~ 83 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVG----CIPKKLMHQASLLGEAVHEAAA 83 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHS----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccC----chhhHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999942 1 3899987642 333222111100 000001
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH-----------HcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEcc
Q psy2398 73 YPMPDNYPVYPNHSMMLDYLRSYAK-----------KFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCN 140 (433)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAt 140 (433)
+.+............+.++...+.+ ..++ .+ +...+..+ +.+.+.+.+.++. ++.||+||+||
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~a~~~--~~~~v~v~~~~g~~~~~~d~lviAT 158 (483)
T 3dgh_A 84 YGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKV--EY-INGLGSFV--DSHTLLAKLKSGERTITAQTFVIAV 158 (483)
T ss_dssp TTBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ECSEEEEE--ETTEEEEECTTCCEEEEEEEEEECC
T ss_pred cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EE-EEeEEEEc--cCCEEEEEeCCCeEEEEcCEEEEeC
Confidence 1111111112344455454444433 2233 12 23333322 3567778777764 69999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChh
Q psy2398 141 GAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTP 220 (433)
Q Consensus 141 G~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~ 220 (433)
|+ .|..|+++|. ....+++.++..... .+++++|||+|.+|+|+|..+++.+.+|+++.|.. +++..
T Consensus 159 Gs--~p~~p~i~G~-~~~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~l~~~------- 225 (483)
T 3dgh_A 159 GG--RPRYPDIPGA-VEYGITSDDLFSLDR-EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI--VLRGF------- 225 (483)
T ss_dssp CE--EECCCSSTTH-HHHCBCHHHHTTCSS-CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC--SSTTS-------
T ss_pred CC--CcCCCCCCCc-ccccCcHHHHhhhhh-cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC--CCccc-------
Confidence 97 8999999981 011233333333322 36799999999999999999999999999998743 22321
Q ss_pred HHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C---
Q psy2398 221 QWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--- 295 (433)
Q Consensus 221 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--- 295 (433)
+..+.. .+.+. +. ..++ ++.....+.++.. .
T Consensus 226 ------d~~~~~-----~l~~~----l~----~~Gv-------------------------~i~~~~~v~~i~~~~~~~~ 261 (483)
T 3dgh_A 226 ------DQQMAE-----LVAAS----ME----ERGI-------------------------PFLRKTVPLSVEKQDDGKL 261 (483)
T ss_dssp ------CHHHHH-----HHHHH----HH----HTTC-------------------------CEEETEEEEEEEECTTSCE
T ss_pred ------CHHHHH-----HHHHH----HH----hCCC-------------------------EEEeCCEEEEEEEcCCCcE
Confidence 011111 11111 11 1111 3333444555542 1
Q ss_pred eEEecCCc-----eeeccEEEEccCCCCCCCCC--CcccccccCCccccccccccCCCCcEEEEccccc-cCChhhHHHH
Q psy2398 296 IVHFVDDT-----HIEVDTIIYATGYNRHFPFI--DKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRL 367 (433)
Q Consensus 296 ~v~~~dG~-----~~~~D~vi~atG~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~-~~~~~~~a~~ 367 (433)
.+.+.+|. ++++|.||+|||++|+.+++ +...+..+.+++.+++. +.++.|+||++|||+. .+...+.|..
T Consensus 262 ~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~ 340 (483)
T 3dgh_A 262 LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQ-EATNVANIYAVGDIIYGKPELTPVAVL 340 (483)
T ss_dssp EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCCTT-CBCSSTTEEECSTTBTTSCCCHHHHHH
T ss_pred EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEECcC-CccCCCCEEEEEcccCCCCccHHHHHH
Confidence 36666654 68999999999999999887 33445554466777655 4789999999999974 4667889999
Q ss_pred HHHHHHHHHhhhh
Q psy2398 368 QGQFIRSYIQAFI 380 (433)
Q Consensus 368 qa~~~a~~i~g~~ 380 (433)
||+.+|.+|.|..
T Consensus 341 ~g~~aa~~i~g~~ 353 (483)
T 3dgh_A 341 AGRLLARRLYGGS 353 (483)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999864
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=262.07 Aligned_cols=293 Identities=14% Similarity=0.175 Sum_probs=194.8
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+||+|||||++|+++|..|++. |.+|+|||+.+.++..... .+. ........+ ..
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-------~~~---~~~g~~~~~-------------~~ 57 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCG-------IAL---YLGKEIKNN-------------DP 57 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGG-------HHH---HHTTCBGGG-------------CG
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccccc-------chh---hhcCCcccC-------------CH
Confidence 5899999999999999999998 9999999998765321100 000 000000000 00
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc-c--CcEEEeCEEEEccCCCCCCCCCCCCCCCCCceecc
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-N--GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHS 162 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~-~--g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~ 162 (433)
.++...+...++++++ .++++++|..++.+.+.+.+... + +.++.||+||+|||+ .|..|+++|.-...+++.
T Consensus 58 ~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs--~p~~p~i~g~~~~~v~~~ 133 (452)
T 2cdu_A 58 RGLFYSSPEELSNLGA--NVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS--KPTVPPIPGIDSSRVYLC 133 (452)
T ss_dssp GGGBSCCHHHHHHTTC--EEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTTTSTTEEEC
T ss_pred HHhhhcCHHHHHHcCC--EEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCC--CcCCCCCCCCCCCCEEEe
Confidence 0011112233455677 57789999999876676666542 1 356999999999997 889999998212234444
Q ss_pred CCCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 163 MDYKSPDQ-----IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 163 ~~~~~~~~-----~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
..+.+... ..+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.. +|+. +..
T Consensus 134 ~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~----------------~~~----- 191 (452)
T 2cdu_A 134 KNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERV-LYKY----------------FDK----- 191 (452)
T ss_dssp SSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSST-TTTT----------------SCH-----
T ss_pred CcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCch-hhhh----------------hhh-----
Confidence 33322211 24789999999999999999999999999999988642 2211 111
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeE--EecCCceeeccEEEEc
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIV--HFVDDTHIEVDTIIYA 313 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v--~~~dG~~~~~D~vi~a 313 (433)
.+.+.+.+.+. ..++ ++.....|+++.. ..+ ...||+++++|.||+|
T Consensus 192 ~~~~~l~~~l~----~~Gv-------------------------~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a 242 (452)
T 2cdu_A 192 EFTDILAKDYE----AHGV-------------------------NLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILC 242 (452)
T ss_dssp HHHHHHHHHHH----HTTC-------------------------EEEESSCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred hHHHHHHHHHH----HCCC-------------------------EEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEEC
Confidence 11111111111 1111 3444566777753 333 3348888999999999
Q ss_pred cCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhhh
Q psy2398 314 TGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 314 tG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
||++|+.++++.. +.. .++++.+++. +.++.|+||++|||+.. ...++.|..||+.+|.++.|..
T Consensus 243 ~G~~p~~~ll~~~-l~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 318 (452)
T 2cdu_A 243 IGFRPNTELLKGK-VAMLDNGAIITDEY-MHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK 318 (452)
T ss_dssp CCEEECCGGGTTT-SCBCTTSCBCCCTT-SBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred cCCCCCHHHHHHh-hhcCCCCCEEECCC-cCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCC
Confidence 9999999988755 555 3455666665 57899999999999863 2467899999999999998863
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=263.03 Aligned_cols=302 Identities=18% Similarity=0.183 Sum_probs=192.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecC----CCcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP----KFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (433)
.++||+|||||++|+++|..|++.|++|+|||+. .+||+|.+.. |.+...+... ..+..+..+.++... .
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~g----c~p~k~l~~~~~~~~~~~~~~~~g~~~~~-~ 92 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVG----CVPKKVMWNTAVHSEFMHDHADYGFPSCE-G 92 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHS----HHHHHHHHHHHHHHHHHTTTTTTTSCCCC-C
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccC----ccchHHHHHHHHHHHHHHHHHhcCccCCC-C
Confidence 3589999999999999999999999999999976 7899987642 2222111100 011111122221111 1
Q ss_pred CCCHHHHHHHHHHH-----------HHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC-
Q psy2398 82 YPNHSMMLDYLRSY-----------AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP- 149 (433)
Q Consensus 82 ~~~~~~~~~~l~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p- 149 (433)
......+.++.+.+ .+..++ .+..+ ++..++ ...+.+. .++.++.||+||+|||+ .|..|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~~~--~~~~~v~-~~g~~~~~d~lviAtG~--~p~~p~ 164 (478)
T 3dk9_A 93 KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHI--EIIRG-HAAFTS--DPKPTIE-VSGKKYTAPHILIATGG--MPSTPH 164 (478)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CEEECS--CSSCEEE-ETTEEEECSCEEECCCE--EECCCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-EEEEee--CCeEEEE-ECCEEEEeeEEEEccCC--CCCCCC
Confidence 22334444443333 333344 23323 222222 3345666 35567999999999997 88888
Q ss_pred --CCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 150 --NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 150 --~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
+++|.. ...++..+...... +++++|||+|.+|+|+|..+++.+.+|+++.|.+..+ |.. +
T Consensus 165 ~~~i~G~~--~~~~~~~~~~~~~~-~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~-------------d 227 (478)
T 3dk9_A 165 ESQIPGAS--LGITSDGFFQLEEL-PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSF-------------D 227 (478)
T ss_dssp TTTSTTGG--GSBCHHHHTTCCSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTS-------------C
T ss_pred cCCCCCCc--eeEchHHhhchhhc-CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc-ccc-------------C
Confidence 888821 23344444333333 6899999999999999999999999999999876532 321 1
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeC--C----eEEe
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N----IVHF 299 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~--~----~v~~ 299 (433)
..+.. .+.+. + ....|.+ ...++++.. . .+.+
T Consensus 228 ~~~~~-----~~~~~----l-------------------------------~~~gv~i~~~~~v~~i~~~~~~~~~~v~~ 267 (478)
T 3dk9_A 228 SMIST-----NCTEE----L-------------------------------ENAGVEVLKFSQVKEVKKTLSGLEVSMVT 267 (478)
T ss_dssp HHHHH-----HHHHH----H-------------------------------HHTTCEEETTEEEEEEEECSSSEEEEEEE
T ss_pred HHHHH-----HHHHH----H-------------------------------HHCCCEEEeCCEEEEEEEcCCCcEEEEEE
Confidence 11111 11111 1 1112332 334555531 1 2455
Q ss_pred cC---C----ceeeccEEEEccCCCCCCCCC--Ccccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 300 VD---D----THIEVDTIIYATGYNRHFPFI--DKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 300 ~d---G----~~~~~D~vi~atG~~~~~~~l--~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
.+ | .++++|.||+|||++|+.++| +...+.. +.+++.+++. +.++.|+||++|||...+...+.|..||
T Consensus 268 ~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g 346 (478)
T 3dk9_A 268 AVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIAAG 346 (478)
T ss_dssp CCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTT-CBCSSTTEEECGGGGCSSCCHHHHHHHH
T ss_pred ccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCC-cccCCCCEEEEEecCCCCccHhHHHHHH
Confidence 54 2 568999999999999999865 3334444 3455666654 4789999999999997777888999999
Q ss_pred HHHHHHHhhh
Q psy2398 370 QFIRSYIQAF 379 (433)
Q Consensus 370 ~~~a~~i~g~ 379 (433)
+.+|.+|.|.
T Consensus 347 ~~aa~~i~~~ 356 (478)
T 3dk9_A 347 RKLAHRLFEY 356 (478)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHcCC
Confidence 9999999886
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=264.16 Aligned_cols=308 Identities=18% Similarity=0.160 Sum_probs=193.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEcc--------CCCCCCcccCCCCCCccccceEeecCCC----cccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEM--------ESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDY 73 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~--------~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 73 (433)
..+||+|||||++|+++|..|++.|.+|+|||+ ...+||+|.+.. |.|+..+..... +.....+
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~g----ciPsk~l~~~~~~~~~~~~~~~~ 80 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVG----CIPKKLMHQAALLGGMIRDAHHY 80 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHS----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccC----CcccHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999999997 557999987652 333322211100 0011111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-----------HcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEcc
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAK-----------KFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCN 140 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAt 140 (433)
.+............+.++.+.+.+ ..++. + +...+..+ +.+.+.+.+.+| .++.||+||+||
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~-i~g~~~~~--~~~~v~v~~~~g~~~~~~~d~lViAT 155 (488)
T 3dgz_A 81 GWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK--Y-FNIKASFV--DEHTVRGVDKGGKATLLSAEHIVIAT 155 (488)
T ss_dssp TCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E-ECCEEEES--SSSEEEEECTTSCEEEEEEEEEEECC
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EEEEEEEc--cCCeEEEEeCCCceEEEECCEEEEcC
Confidence 111111123344444444433332 23331 2 23333322 245677776666 468999999999
Q ss_pred CCCCCCCCCC-CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCCh
Q psy2398 141 GAQRVARYPN-YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPT 219 (433)
Q Consensus 141 G~~s~p~~p~-i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~ 219 (433)
|+ .|..|+ ++|. ....+++.++..... .+++++|||+|.+|+|+|..|++.+.+|+++.|.. ++|.+
T Consensus 156 Gs--~p~~p~~i~G~-~~~~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~--~l~~~------ 223 (488)
T 3dgz_A 156 GG--RPRYPTQVKGA-LEYGITSDDIFWLKE-SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGF------ 223 (488)
T ss_dssp CE--EECCCSSCBTH-HHHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--SSTTS------
T ss_pred CC--CCCCCCCCCCc-ccccCcHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc--ccccC------
Confidence 98 899998 9981 011233333333333 36789999999999999999999999999999864 23321
Q ss_pred hHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee---CC-
Q psy2398 220 PQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN---GN- 295 (433)
Q Consensus 220 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~---~~- 295 (433)
+..+.. .+.+.+. ..++ ++.....+.++. +.
T Consensus 224 -------d~~~~~-----~l~~~l~--------~~gv-------------------------~~~~~~~v~~i~~~~~~~ 258 (488)
T 3dgz_A 224 -------DQQMSS-----LVTEHME--------SHGT-------------------------QFLKGCVPSHIKKLPTNQ 258 (488)
T ss_dssp -------CHHHHH-----HHHHHHH--------HTTC-------------------------EEEETEEEEEEEECTTSC
T ss_pred -------CHHHHH-----HHHHHHH--------HCCC-------------------------EEEeCCEEEEEEEcCCCc
Confidence 111111 1111111 0111 222233344442 22
Q ss_pred -eEEecC---Cc--eeeccEEEEccCCCCCCCCCC--ccccccc--CCccccccccccCCCCcEEEEcccc-ccCChhhH
Q psy2398 296 -IVHFVD---DT--HIEVDTIIYATGYNRHFPFID--KEKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVN-AAAGLGDG 364 (433)
Q Consensus 296 -~v~~~d---G~--~~~~D~vi~atG~~~~~~~l~--~~~~~~~--~~~~~~~~~~~~~~~p~i~~iG~~~-~~~~~~~~ 364 (433)
.+.+.+ |+ ++++|.||+|||++|+.++|. ...+..+ .+++.+++. +.++.|+||++|||+ ..+...+.
T Consensus 259 ~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~ 337 (488)
T 3dgz_A 259 LQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ-EATSVPHIYAIGDVAEGRPELTPT 337 (488)
T ss_dssp EEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTT-SBCSSTTEEECGGGBTTCCCCHHH
T ss_pred EEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCC-CccCCCCEEEeEEecCCCCcchhH
Confidence 355544 55 478999999999999998853 3445544 455666654 578999999999997 34567788
Q ss_pred HHHHHHHHHHHHhhhh
Q psy2398 365 LRLQGQFIRSYIQAFI 380 (433)
Q Consensus 365 a~~qa~~~a~~i~g~~ 380 (433)
|..||+.+|.++.|..
T Consensus 338 A~~~g~~aa~~i~g~~ 353 (488)
T 3dgz_A 338 AIKAGKLLAQRLFGKS 353 (488)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999999864
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=253.72 Aligned_cols=302 Identities=16% Similarity=0.220 Sum_probs=195.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecC----CCcccCCC---CCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP----KFNTQVPD---YPMPDN 78 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~ 78 (433)
.++||+|||||++|+++|..|++.|.+|+|||+ +.+||+|.+.. |.++..+... ..+..+.. +..+..
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g----~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~ 78 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIG----CIPSKALIHVAEQFHQASRFTEPSPLGISVA 78 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHS----HHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcC----cHhHHHHHHHHHHHHHHhhcccccccCcccC
Confidence 458999999999999999999999999999999 68999987542 2332211100 00001111 111111
Q ss_pred CCCCCCHHHHHHH-----------HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 79 YPVYPNHSMMLDY-----------LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 79 ~~~~~~~~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
. .......+..+ +..+.++.++ .+..++.+. + +.. +|++.+ .++.||+||+|||+ .|.
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~~~-~--~~~--~v~v~~-~~~~~d~lviATGs--~p~ 147 (458)
T 1lvl_A 79 S-PRLDIGQSVAWKDGIVDRLTTGVAALLKKHGV--KVVHGWAKV-L--DGK--QVEVDG-QRIQCEHLLLATGS--SSV 147 (458)
T ss_dssp C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECSCEEE-E--ETT--EEEETT-EEEECSEEEECCCE--EEC
T ss_pred C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEEEEEE-c--cCC--EEEEee-EEEEeCEEEEeCCC--CCC
Confidence 1 11223333322 3345556676 366565433 3 233 555555 67999999999998 777
Q ss_pred CCC-CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhh
Q psy2398 148 YPN-YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 226 (433)
Q Consensus 148 ~p~-i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 226 (433)
.|+ ++. .+.++++.++..... .+++++|||+|.+|+|+|..|++.+.+|+++.+.+.. +|..
T Consensus 148 ~~~~~~~--~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~------------- 210 (458)
T 1lvl_A 148 ELPMLPL--GGPVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI-LPTY------------- 210 (458)
T ss_dssp CBTTBCC--BTTEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS-STTS-------------
T ss_pred CCCCCCc--cCcEecHHHHhhhhc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc-cccc-------------
Confidence 665 442 234666655554433 4789999999999999999999999999999988752 2311
Q ss_pred chhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEec--CC--
Q psy2398 227 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFV--DD-- 302 (433)
Q Consensus 227 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~--dG-- 302 (433)
+..+.. .+.+.+. ..++ ++.....+++++...+.+. +|
T Consensus 211 ~~~~~~-----~l~~~l~--------~~gv-------------------------~i~~~~~v~~i~~~~v~v~~~~G~~ 252 (458)
T 1lvl_A 211 DSELTA-----PVAESLK--------KLGI-------------------------ALHLGHSVEGYENGCLLANDGKGGQ 252 (458)
T ss_dssp CHHHHH-----HHHHHHH--------HHTC-------------------------EEETTCEEEEEETTEEEEECSSSCC
T ss_pred CHHHHH-----HHHHHHH--------HCCC-------------------------EEEECCEEEEEEeCCEEEEECCCce
Confidence 111111 1111111 0011 2223345566654324443 67
Q ss_pred ceeeccEEEEccCCCCCCCCC--CcccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 303 THIEVDTIIYATGYNRHFPFI--DKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 303 ~~~~~D~vi~atG~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+++++|.||+|||++|+.+++ +..++..+.+++.+++. +.++.|+||++|||+..+...+.|..||+.+|.++.|.
T Consensus 253 ~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 330 (458)
T 1lvl_A 253 LRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDER-CQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK 330 (458)
T ss_dssp CEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTT-CBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCC-CcCCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 579999999999999999875 43344443235666654 56889999999999987778889999999999999984
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=256.76 Aligned_cols=307 Identities=16% Similarity=0.116 Sum_probs=193.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC------CCCcccCCCCCCccccceEeecCCCc-----ccCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD------LGGVWNSQASCGRVYPSLHLISPKFN-----TQVPDYP 74 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~------~Gg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 74 (433)
..+||+|||||++|+++|..|++.|++|+|||+.+. +||+|.+.. |.+...+...... ..+..+.
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~g----ciPsk~l~~~~~~~~~~~~~~~~~g 77 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVG----CIPSKALLDSSYKFHEAHESFKLHG 77 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHS----HHHHHHHHHHHHHHHHHHTTSGGGT
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCcccccc----HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 458999999999999999999999999999999874 455554321 1221110000000 0001111
Q ss_pred CCCCCCCCCCHHHHHHH-----------HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccC
Q psy2398 75 MPDNYPVYPNHSMMLDY-----------LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNG 141 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG 141 (433)
+.... .......+.++ +....++.++ .+..++ +.. .+.+.+.+.+.++ ..+.||+||+|||
T Consensus 78 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~--~~~~~~~v~~~~g~~~~~~~d~lvlAtG 151 (476)
T 3lad_A 78 ISTGE-VAIDVPTMIARKDQIVRNLTGGVASLIKANGV--TLFEGH-GKL--LAGKKVEVTAADGSSQVLDTENVILASG 151 (476)
T ss_dssp EECSC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESE-EEE--CSTTCEEEECTTSCEEEECCSCEEECCC
T ss_pred cccCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEE--ecCCEEEEEcCCCceEEEEcCEEEEcCC
Confidence 10000 11122222222 2233444455 244333 222 2356778877776 4689999999999
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhH
Q psy2398 142 AQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ 221 (433)
Q Consensus 142 ~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~ 221 (433)
+ .|..|+..+.....++++.+..... ..+++++|||+|.+|+|+|..+.+.+.+|+++.|.+.. +|..
T Consensus 152 ~--~p~~~~~~~~~~~~v~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~-------- 219 (476)
T 3lad_A 152 S--KPVEIPPAPVDQDVIVDSTGALDFQ-NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF-LPAV-------- 219 (476)
T ss_dssp E--EECCCTTSCCCSSSEEEHHHHTSCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-STTS--------
T ss_pred C--CCCCCCCCCCCcccEEechhhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc-Cccc--------
Confidence 8 7776655542223455555444433 34789999999999999999999999999999988642 2211
Q ss_pred HhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeC----C
Q psy2398 222 WMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG----N 295 (433)
Q Consensus 222 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~----~ 295 (433)
+. .+.+.+.+.+ ....|. ....+.++.. .
T Consensus 220 -----~~---------~~~~~l~~~l-------------------------------~~~Gv~v~~~~~v~~i~~~~~~~ 254 (476)
T 3lad_A 220 -----DE---------QVAKEAQKIL-------------------------------TKQGLKILLGARVTGTEVKNKQV 254 (476)
T ss_dssp -----CH---------HHHHHHHHHH-------------------------------HHTTEEEEETCEEEEEEECSSCE
T ss_pred -----CH---------HHHHHHHHHH-------------------------------HhCCCEEEECCEEEEEEEcCCEE
Confidence 11 1111111111 111333 3455666642 2
Q ss_pred eEEecCC---ceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 296 IVHFVDD---THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 296 ~v~~~dG---~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
.+.+.++ +++++|.||+|||++|+.+++ +...+..+ .+++.+++. +.++.|+||++|||...+...+.|..||
T Consensus 255 ~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g 333 (476)
T 3lad_A 255 TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDY-CATSVPGVYAIGDVVRGAMLAHKASEEG 333 (476)
T ss_dssp EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHH
T ss_pred EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCC-cccCCCCEEEEEccCCCcccHHHHHHHH
Confidence 3566655 578999999999999998864 44445543 355666655 5689999999999997777888999999
Q ss_pred HHHHHHHhhhh
Q psy2398 370 QFIRSYIQAFI 380 (433)
Q Consensus 370 ~~~a~~i~g~~ 380 (433)
+.+|.+|.|+.
T Consensus 334 ~~aa~~i~g~~ 344 (476)
T 3lad_A 334 VVVAERIAGHK 344 (476)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHhcCCC
Confidence 99999999864
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=258.58 Aligned_cols=290 Identities=15% Similarity=0.111 Sum_probs=191.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.+||+|||||++|+++|..|++.|. +|++||+.+.++. ..+ ..++.+.... ..
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~----~~~----------~l~~~~~~~~-----------~~ 58 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPH----HLP----------PLSKAYLAGK-----------AT 58 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCB----CSG----------GGGTTTTTTC-----------SC
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCC----cCC----------CCcHHHhCCC-----------CC
Confidence 4799999999999999999999998 7999998765421 100 0000000000 00
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCC-c-eec
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG-E-ILH 161 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g-~-~~~ 161 (433)
...+.....+++++.++ .++++++|+.++.++. .|++.++.++.||+||+|||+ .|..|+++| .+.+ . +.+
T Consensus 59 ~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~--~p~~~~i~G~~~~~~~~v~~ 132 (431)
T 1q1r_A 59 AESLYLRTPDAYAAQNI--QLLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLATGG--RPRPLPVASGAVGKANNFRY 132 (431)
T ss_dssp SGGGBSSCHHHHHHTTE--EEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE--EECCCGGGTTHHHHSTTEEE
T ss_pred hHHhcccCHHHHHhCCC--EEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcCCC--CccCCCCCCcccCCCceEEE
Confidence 00000011233455666 5788899999986443 677778888999999999999 888898888 3222 1 222
Q ss_pred cCCCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHH
Q psy2398 162 SMDYKSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 236 (433)
Q Consensus 162 ~~~~~~~-----~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (433)
.....+. ....+++|+|||+|.+|+|+|..|.+.|.+|+++.+.+.. +++. ++..+..
T Consensus 133 ~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~-l~~~------------~~~~~~~---- 195 (431)
T 1q1r_A 133 LRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV-LERV------------TAPPVSA---- 195 (431)
T ss_dssp SSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST-TTTT------------SCHHHHH----
T ss_pred ECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc-ccch------------hhHHHHH----
Confidence 1111110 1124789999999999999999999999999999987642 2211 0111111
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----C---eEEecCCceeeccE
Q psy2398 237 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----N---IVHFVDDTHIEVDT 309 (433)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~---~v~~~dG~~~~~D~ 309 (433)
.+.+.+. ..++ ++.....++++.+ . .|.+.||+++++|.
T Consensus 196 -~l~~~l~--------~~GV-------------------------~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~ 241 (431)
T 1q1r_A 196 -FYEHLHR--------EAGV-------------------------DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADL 241 (431)
T ss_dssp -HHHHHHH--------HHTC-------------------------EEECSCCEEEEEECTTTCCEEEEEETTSCEEECSE
T ss_pred -HHHHHHH--------hCCe-------------------------EEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCE
Confidence 1111111 0111 2333455666643 2 47788999999999
Q ss_pred EEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCC----------hhhHHHHHHHHHHHHHhhh
Q psy2398 310 IIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG----------LGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~----------~~~~a~~qa~~~a~~i~g~ 379 (433)
||+|+|++|+.++++...+..++ ++.+++ .+.++.|+||++|||+..+. .+..|..||+.+|.+|.|.
T Consensus 242 Vv~a~G~~p~~~l~~~~gl~~~~-gi~Vd~-~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 319 (431)
T 1q1r_A 242 VIAGIGLIPNCELASAAGLQVDN-GIVINE-HMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK 319 (431)
T ss_dssp EEECCCEEECCHHHHHTTCCBSS-SEECCT-TSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCCCcCcchhhccCCCCCC-CEEECC-CcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCC
Confidence 99999999998888766665553 455554 45789999999999986432 4578999999999999986
Q ss_pred h
Q psy2398 380 I 380 (433)
Q Consensus 380 ~ 380 (433)
.
T Consensus 320 ~ 320 (431)
T 1q1r_A 320 V 320 (431)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=257.55 Aligned_cols=291 Identities=15% Similarity=0.245 Sum_probs=192.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
++||+|||||++|+++|..|++. |.+|+|||+.+..++.... .+.. .... ...
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-------~~~~---~~~~---------------~~~ 90 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG-------LPYV---ISGA---------------IAS 90 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG-------HHHH---HTTS---------------SSC
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC-------cchh---hcCC---------------cCC
Confidence 47999999999999999999996 8999999998765421110 0000 0000 000
Q ss_pred HHHHH-HHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEccCCCCCCCCCCCCC-CCCCce
Q psy2398 85 HSMML-DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEI 159 (433)
Q Consensus 85 ~~~~~-~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~-~~g~--~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~ 159 (433)
..++. .+...+.+++++ .++++++|+.++.+.+.+.+.. .+|+ ++.||+||+|||+ .|..|+++| ... .+
T Consensus 91 ~~~l~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~-~v 165 (480)
T 3cgb_A 91 TEKLIARNVKTFRDKYGI--DAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV--RPVMPEWEGRDLQ-GV 165 (480)
T ss_dssp GGGGBSSCHHHHHHTTCC--EEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCBTTTSB-TE
T ss_pred HHHhhhcCHHHHHhhcCC--EEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC--cccCCCCCCccCC-CE
Confidence 11111 112333455577 5788899999987777777765 3455 6899999999998 889999998 322 34
Q ss_pred eccCCCCCCC-------CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 160 LHSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 160 ~~~~~~~~~~-------~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
++.....+.. ...+++|+|||+|.+|+|+|..+.+.+.+|+++.+++.. ++.. +.
T Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~-------------~~---- 227 (480)
T 3cgb_A 166 HLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI-GTIY-------------DG---- 227 (480)
T ss_dssp ECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGT-TSSS-------------CH----
T ss_pred EEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCch-hhcC-------------CH----
Confidence 4433222111 126899999999999999999999999999999987642 2210 11
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-eE--EecCCceeeccE
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-IV--HFVDDTHIEVDT 309 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-~v--~~~dG~~~~~D~ 309 (433)
.+.+.+.+.+. ..++ ++.....|+++.+. .+ ...++.++++|.
T Consensus 228 -----~~~~~l~~~l~----~~Gv-------------------------~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~ 273 (480)
T 3cgb_A 228 -----DMAEYIYKEAD----KHHI-------------------------EILTNENVKAFKGNERVEAVETDKGTYKADL 273 (480)
T ss_dssp -----HHHHHHHHHHH----HTTC-------------------------EEECSCCEEEEEESSBEEEEEETTEEEECSE
T ss_pred -----HHHHHHHHHHH----HcCc-------------------------EEEcCCEEEEEEcCCcEEEEEECCCEEEcCE
Confidence 11111111111 1111 23334456666432 22 233556799999
Q ss_pred EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccC----------ChhhHHHHHHHHHHHHHhh
Q psy2398 310 IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~----------~~~~~a~~qa~~~a~~i~g 378 (433)
||+|+|++|+.++++...+..+ ++++.+++. +.++.|+||++|||+... .++..|..||+.+|.++.|
T Consensus 274 vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~-~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 352 (480)
T 3cgb_A 274 VLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAY-MQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLD 352 (480)
T ss_dssp EEECSCEEESCGGGTTSCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTT
T ss_pred EEECcCCCcChHHHHhCCcccCCCCCEEECCC-ccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcC
Confidence 9999999999988876656553 456666654 578899999999998431 3578899999999999988
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
..
T Consensus 353 ~~ 354 (480)
T 3cgb_A 353 KR 354 (480)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=250.23 Aligned_cols=287 Identities=16% Similarity=0.174 Sum_probs=191.6
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+||+|||||++|+++|..|++. |.+|+|||+.+.+|.. ... .+. ...... ...
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~------~~~---~~~~~~---------------~~~ 55 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-SAG------MQL---YLEGKV---------------KDV 55 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-GGG------HHH---HHTTSS---------------CCG
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-ccc------chh---hhcCcc---------------CCH
Confidence 4899999999999999999998 8999999998765411 000 000 000000 000
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEccCCCCCCCCCCCCC-CCCCceec
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILH 161 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~-~~g~--~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~ 161 (433)
.++..+.....+++++ .+++++.|..++.+.+.+.+.. .+|+ ++.||+||+|||+ .|..|+++| ... .+++
T Consensus 56 ~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~-~v~~ 130 (447)
T 1nhp_A 56 NSVRYMTGEKMESRGV--NVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA--VPFELDIPGKDLD-NIYL 130 (447)
T ss_dssp GGSBSCCHHHHHHTTC--EEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCSTTTTSB-SEEC
T ss_pred HHhhcCCHHHHHHCCC--EEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCC--CcCCCCCCCCCCC-CeEE
Confidence 1111112233445677 5778999999987667666654 2354 3899999999998 889999998 322 3444
Q ss_pred cCCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCch
Q psy2398 162 SMDYKSP-------DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 234 (433)
Q Consensus 162 ~~~~~~~-------~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 234 (433)
...+.+. ....+++++|||+|.+|+|+|..+++.+.+|+++.+.+.. +++. +..
T Consensus 131 ~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----------------~~~-- 191 (447)
T 1nhp_A 131 MRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP-LGVY----------------LDK-- 191 (447)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST-TTTT----------------CCH--
T ss_pred ECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc-cccc----------------CCH--
Confidence 4332211 1125789999999999999999999999999999987642 2211 100
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeCC----eEEecCCceeecc
Q psy2398 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN----IVHFVDDTHIEVD 308 (433)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~~----~v~~~dG~~~~~D 308 (433)
.+.+.+.+.+ ....++ ....++++... .+.+ +|.++++|
T Consensus 192 ---~~~~~l~~~l-------------------------------~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d 236 (447)
T 1nhp_A 192 ---EFTDVLTEEM-------------------------------EANNITIATGETVERYEGDGRVQKVVT-DKNAYDAD 236 (447)
T ss_dssp ---HHHHHHHHHH-------------------------------HTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECS
T ss_pred ---HHHHHHHHHH-------------------------------HhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECC
Confidence 1111111111 111333 34566666532 2444 67789999
Q ss_pred EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHh
Q psy2398 309 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQ 377 (433)
Q Consensus 309 ~vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~ 377 (433)
.||+|||++|+.++++.. +..+ ++++.++.. +.++.|+||++|||+.. ...++.|..||+.+|.++.
T Consensus 237 ~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~-~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~ 314 (447)
T 1nhp_A 237 LVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEY-MRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE 314 (447)
T ss_dssp EEEECSCEEESCGGGTTT-SCBCTTSCBCCCTT-CBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred EEEECcCCCCChHHHHhh-hhhcCCCcEEECcc-ccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhc
Confidence 999999999999988755 5543 455666654 57889999999999852 2467889999999999998
Q ss_pred hhh
Q psy2398 378 AFI 380 (433)
Q Consensus 378 g~~ 380 (433)
|..
T Consensus 315 g~~ 317 (447)
T 1nhp_A 315 EPV 317 (447)
T ss_dssp SCC
T ss_pred CCC
Confidence 853
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=253.71 Aligned_cols=291 Identities=19% Similarity=0.213 Sum_probs=184.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.|.+..+ .+...
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip-----------------------------~~~~~ 171 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIP-----------------------------GFKLE 171 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSC-----------------------------TTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCC-----------------------------CccCC
Confidence 4579999999999999999999999999999999999998876411 11122
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.++..++++++++ ++++++.|. . .+++++. ...||+||+|||+. .|+.++++| ...+ +.+..+
T Consensus 172 ~~~~~~~~~~l~~~gv--~~~~~~~v~------~--~v~~~~~-~~~~d~vvlAtG~~-~~~~~~ipG~~~~g-v~~a~~ 238 (456)
T 2vdc_G 172 KSVVERRVKLLADAGV--IYHPNFEVG------R--DASLPEL-RRKHVAVLVATGVY-KARDIKAPGSGLGN-IVAALD 238 (456)
T ss_dssp HHHHHHHHHHHHHTTC--EEETTCCBT------T--TBCHHHH-HSSCSEEEECCCCC-EECCTTCSCCTTTT-EEEHHH
T ss_pred HHHHHHHHHHHHHCCc--EEEeCCEec------c--EEEhhHh-HhhCCEEEEecCCC-CCCCCCCCCCcCCC-cEEHHH
Confidence 4566677777888887 577776642 1 1222232 25799999999984 467778888 3333 222111
Q ss_pred C---------CC--------CCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhh
Q psy2398 165 Y---------KS--------PDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQL 226 (433)
Q Consensus 165 ~---------~~--------~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 226 (433)
+ .. .....+|+|+|||+|.+|+|+|..+.+.+. +|+++.|++...+|..
T Consensus 239 ~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~------------- 305 (456)
T 2vdc_G 239 YLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGS------------- 305 (456)
T ss_dssp HHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSC-------------
T ss_pred HHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCC-------------
Confidence 0 00 123568999999999999999999999876 5999999875333321
Q ss_pred chhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee---ecC-Cceee--eC-CeEEe
Q psy2398 227 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL---PKD-DIKNL--NG-NIVHF 299 (433)
Q Consensus 227 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~-~v~~~--~~-~~v~~ 299 (433)
. ...+...+ .++. ...+..+.+....+++. +.. ..... ++ .....
T Consensus 306 ---~-------~e~~~~~~--------~Gv~----------~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~ 357 (456)
T 2vdc_G 306 ---Q-------REVAHAEE--------EGVE----------FIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQV 357 (456)
T ss_dssp ---H-------HHHHHHHH--------TTCE----------EECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEE
T ss_pred ---H-------HHHHHHHH--------CCCE----------EEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccc
Confidence 0 00111110 0110 00000000000011110 000 00000 00 00111
Q ss_pred cCC--ceeeccEEEEccCCCCCCC--CCCcccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHH
Q psy2398 300 VDD--THIEVDTIIYATGYNRHFP--FIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 374 (433)
Q Consensus 300 ~dG--~~~~~D~vi~atG~~~~~~--~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~ 374 (433)
.+| .++++|.||+|+|++|+.. +++...+.. ..+.+.++...+.|+.|+||++||+...+.++..|..||+.+|.
T Consensus 358 ~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~ 437 (456)
T 2vdc_G 358 IEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAE 437 (456)
T ss_dssp EEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHHHHHHHHHHHHHH
Confidence 133 3589999999999999864 666555544 34667777665679999999999998877778889999999988
Q ss_pred HHhhh
Q psy2398 375 YIQAF 379 (433)
Q Consensus 375 ~i~g~ 379 (433)
+|.+.
T Consensus 438 ~i~~~ 442 (456)
T 2vdc_G 438 GIHAY 442 (456)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=259.70 Aligned_cols=309 Identities=17% Similarity=0.134 Sum_probs=195.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccC--------CCCCCcccCCCCCCccccceEeecCCCccc-----CCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEME--------SDLGGVWNSQASCGRVYPSLHLISPKFNTQ-----VPDYP 74 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~--------~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 74 (433)
|||+||||||+|+.+|..++++|.+|+|||+. ..+||+|.+.. |.|+..+.....+.. ...+.
T Consensus 43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~G----CIPsK~L~~aa~~~~~~~~~~~~~G 118 (542)
T 4b1b_A 43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVG----CVPKKLMHYAGHMGSIFKLDSKAYG 118 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHS----HHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccc----hHHHHHHHHHHHHHHHHHhhhHhcC
Confidence 79999999999999999999999999999974 34899887763 344322211110000 00000
Q ss_pred CCCCCCCCCCHHHHHHHHHHH-----------HHHcCCCcceEeCcEEEEEEEeCCeEEEEEc----cCcEEEeCEEEEc
Q psy2398 75 MPDNYPVYPNHSMMLDYLRSY-----------AKKFDVYNHSIFNTEVINLEQYEDIWEVELS----NGKKKKYDFIAVC 139 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~----~g~~~~~d~vIvA 139 (433)
..... .......+.++.+.. .++.++. + +.....-+ +.+...|... +++++++|++|||
T Consensus 119 i~~~~-~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~--~-i~G~a~f~--~~~~v~V~~~~~~~~~~~i~a~~iiIA 192 (542)
T 4b1b_A 119 WKFDN-LKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVK--Y-INGLAKLK--DKNTVSYYLKGDLSKEETVTGKYILIA 192 (542)
T ss_dssp EEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E-ECEEEEEE--ETTEEEEEEC--CCCEEEEEEEEEEEC
T ss_pred cccCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EeeeEEEc--CCCcceEeecccCCceEEEeeeeEEec
Confidence 00000 001223333333332 2233431 1 12221111 2455555443 2346899999999
Q ss_pred cCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCCh
Q psy2398 140 NGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPT 219 (433)
Q Consensus 140 tG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~ 219 (433)
||+ .|.+|+..+.....++.+.+..+.... +++++|||+|.+|+|+|..+++.|.+||++.|.. ++|..+
T Consensus 193 TGs--~P~~P~~~~~~~~~~~ts~~~l~l~~l-P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~--~L~~~D----- 262 (542)
T 4b1b_A 193 TGC--RPHIPDDVEGAKELSITSDDIFSLKKD-PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI--VLRGFD----- 262 (542)
T ss_dssp CCE--EECCCSSSBTHHHHCBCHHHHTTCSSC-CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC--SSTTSC-----
T ss_pred cCC--CCCCCCcccCCCccccCchhhhccccC-CceEEEECCCHHHHHHHHHHHhcCCeEEEecccc--cccccc-----
Confidence 998 899886554111234455555555554 5789999999999999999999999999998753 344321
Q ss_pred hHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC--
Q psy2398 220 PQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN-- 295 (433)
Q Consensus 220 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~-- 295 (433)
. ...+.+.+.+. ..++ .+.....++++. +.
T Consensus 263 --------~---------ei~~~l~~~l~----~~gi-------------------------~~~~~~~v~~~~~~~~~~ 296 (542)
T 4b1b_A 263 --------Q---------QCAVKVKLYME----EQGV-------------------------MFKNGILPKKLTKMDDKI 296 (542)
T ss_dssp --------H---------HHHHHHHHHHH----HTTC-------------------------EEEETCCEEEEEEETTEE
T ss_pred --------h---------hHHHHHHHHHH----hhcc-------------------------eeecceEEEEEEecCCeE
Confidence 1 11111111111 1111 233344455553 22
Q ss_pred eEEecCCceeeccEEEEccCCCCCCCCCCcccc--ccc-CCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHH
Q psy2398 296 IVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKL--EWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQF 371 (433)
Q Consensus 296 ~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~ 371 (433)
.+.+.++.++++|.|++|+|++||+..|..+.. ..+ .+.....+..+.|+.|+|||+||+... +.+.+.|..|++.
T Consensus 297 ~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~ 376 (542)
T 4b1b_A 297 LVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEI 376 (542)
T ss_dssp EEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCCCCHHHHHHHHHH
T ss_pred EEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEeccccCCchhHHHHHHHHHHH
Confidence 356788889999999999999999998876644 332 345556677889999999999999864 5678899999999
Q ss_pred HHHHHhhhhcC
Q psy2398 372 IRSYIQAFIRK 382 (433)
Q Consensus 372 ~a~~i~g~~~l 382 (433)
++.++.|....
T Consensus 377 aa~~i~g~~~~ 387 (542)
T 4b1b_A 377 LARRLFKDSDE 387 (542)
T ss_dssp HHHHHHSCCCC
T ss_pred HHHHHhcCCCc
Confidence 99999986543
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=249.46 Aligned_cols=307 Identities=17% Similarity=0.200 Sum_probs=185.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC-C-------CCCCcccCCCCCCccccceEeecCCC----cccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME-S-------DLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDY 73 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~-~-------~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 73 (433)
.++||+||||||+|+++|..|++.|++|+|||+. + .+||+|.+.. ++|+..+..... ......+
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g----~iP~~~l~~~~~~~~~~~~~~~~ 181 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVG----CIPKKLMHQAGLLSHALEDAEHF 181 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHS----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccC----CCchHHHHHHHHHHHHHhhHHhC
Confidence 4589999999999999999999999999999973 2 3677665431 233221111000 0000000
Q ss_pred C--CCCCCCCCCCHHHHHHHHHHHHHHc-----------CCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEE
Q psy2398 74 P--MPDNYPVYPNHSMMLDYLRSYAKKF-----------DVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAV 138 (433)
Q Consensus 74 ~--~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIv 138 (433)
. .+.. .......++.++++.+++++ ++ .+ ....+..++ .....+...+| .++.||+||+
T Consensus 182 g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~~-~~~~~~~~~--~~~v~v~~~~g~~~~~~~d~lvi 255 (598)
T 2x8g_A 182 GWSLDRS-KISHNWSTMVEGVQSHIGSLNWGYKVALRDNQV--TY-LNAKGRLIS--PHEVQITDKNQKVSTITGNKIIL 255 (598)
T ss_dssp TCCCCGG-GCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ECSEEEEEE--TTEEEEECTTCCEEEEEEEEEEE
T ss_pred CccccCC-cCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCc--EE-EEEEEEEcC--CCEEEEEeCCCCeEEEEeCEEEE
Confidence 0 0100 01234466666666555432 22 11 122333332 34455555555 4689999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCC
Q psy2398 139 CNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKP 218 (433)
Q Consensus 139 AtG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~ 218 (433)
|||+ .|+.|+++|.. ...+++.++... ...+++|+|||+|.+|+|+|..|++.|.+|+++.|+ .++|..
T Consensus 256 AtGs--~p~~p~i~G~~-~~~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~l~~~----- 324 (598)
T 2x8g_A 256 ATGE--RPKYPEIPGAV-EYGITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS--ILLRGF----- 324 (598)
T ss_dssp CCCE--EECCCSSTTHH-HHCEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CSSTTS-----
T ss_pred eCCC--CCCCCCCCCcc-cceEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC--cCcCcC-----
Confidence 9997 89999999810 012333332222 234678999999999999999999999999999987 233321
Q ss_pred hhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceee------
Q psy2398 219 TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL------ 292 (433)
Q Consensus 219 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~------ 292 (433)
+..+.. .+.+.+. ..++ .+.....+.++
T Consensus 325 --------d~~~~~-----~~~~~l~--------~~gv-------------------------~i~~~~~v~~v~~~~~~ 358 (598)
T 2x8g_A 325 --------DQQMAE-----KVGDYME--------NHGV-------------------------KFAKLCVPDEIKQLKVV 358 (598)
T ss_dssp --------CHHHHH-----HHHHHHH--------HTTC-------------------------EEEETEEEEEEEEEECC
T ss_pred --------CHHHHH-----HHHHHHH--------hCCC-------------------------EEEECCeEEEEEecccc
Confidence 011111 1111111 0111 11111112222
Q ss_pred --eC---CeE----EecCCceee--ccEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccc-
Q psy2398 293 --NG---NIV----HFVDDTHIE--VDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA- 357 (433)
Q Consensus 293 --~~---~~v----~~~dG~~~~--~D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~- 357 (433)
.. ..+ .+.+|++++ +|.||+|+|++|+.++|. ...+..+ .+++.+++. +.++.|+||++||++.
T Consensus 359 ~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~ts~~~VyA~GD~~~~ 437 (598)
T 2x8g_A 359 DTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDD-EQTTVSNVYAIGDINAG 437 (598)
T ss_dssp BTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBTT
T ss_pred ccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCC-CcCCCCCEEEEeeecCC
Confidence 11 222 245787655 999999999999988753 3344443 355666665 5789999999999954
Q ss_pred cCChhhHHHHHHHHHHHHHhhhh
Q psy2398 358 AAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 358 ~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
.+..++.|..||+.+|.+|.+..
T Consensus 438 ~~~~~~~A~~~g~~aa~~i~~~~ 460 (598)
T 2x8g_A 438 KPQLTPVAIQAGRYLARRLFAGA 460 (598)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCccHHHHHHhHHHHHHHHhcCC
Confidence 35677889999999999998754
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-30 Score=246.19 Aligned_cols=281 Identities=13% Similarity=0.086 Sum_probs=186.6
Q ss_pred CcEEEECCChHHHHHHHHHHh---cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSE---GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~---~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
++|+|||||++|+++|..|++ .|.+|+|||+++..+..... + . .......
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~--------~--------------~-----~~~~~~~ 54 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPAL--------P--------------H-----VAIGVRD 54 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSS--------C--------------C-----CCSSCCC
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccch--------h--------------h-----cccCCcC
Confidence 589999999999999999999 89999999998754211000 0 0 0001111
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc----EEEeCEEEEccCCCCCCCCCCCCC-CCCCce
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK----KKKYDFIAVCNGAQRVARYPNYSG-YFSGEI 159 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~----~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~ 159 (433)
..++..++.+.+++.++ ++..+ +|+.++.+.. .|++.++. ++.||+||+|||. .|..|.++| .. ..
T Consensus 55 ~~~~~~~~~~~~~~~gv--~~~~~-~v~~i~~~~~--~V~~~~g~~~~~~~~~d~lViAtG~--~~~~~~ipG~~~--~~ 125 (409)
T 3h8l_A 55 VDELKVDLSEALPEKGI--QFQEG-TVEKIDAKSS--MVYYTKPDGSMAEEEYDYVIVGIGA--HLATELVKGWDK--YG 125 (409)
T ss_dssp CCCEEEEHHHHTGGGTC--EEEEC-EEEEEETTTT--EEEEECTTSCEEEEECSEEEECCCC--EECGGGSBTHHH--HC
T ss_pred HHHHHHHHHHHHhhCCe--EEEEe-eEEEEeCCCC--EEEEccCCcccceeeCCEEEECCCC--CcCccCCCChhh--cC
Confidence 12223445555666677 35555 8888876555 45555543 3899999999998 888888888 21 22
Q ss_pred eccCCCCCCCCCC------CCeEEEEcCC-------------------C------CHHHHHHHHh----ccC----CcEE
Q psy2398 160 LHSMDYKSPDQIR------NKRVLVVGAG-------------------N------SGCDIAVDAS----HHS----EKVY 200 (433)
Q Consensus 160 ~~~~~~~~~~~~~------~~~v~VvG~G-------------------~------sg~d~a~~l~----~~~----~~V~ 200 (433)
.+...+.....+. .++++|||+| . .++|+|..++ +.+ .+|+
T Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~ 205 (409)
T 3h8l_A 126 YSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVT 205 (409)
T ss_dssp EESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEE
T ss_pred cCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEE
Confidence 2322222211111 2567799999 2 3678886554 445 3899
Q ss_pred EEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccC
Q psy2398 201 HSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH 280 (433)
Q Consensus 201 ~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (433)
++.+.+ .+|.. +..+.. .+.+.+. .
T Consensus 206 ~~~~~~--~l~~~-------------~~~~~~-----~~~~~l~-----------------------------------~ 230 (409)
T 3h8l_A 206 VFSPGE--YLSDL-------------SPNSRK-----AVASIYN-----------------------------------Q 230 (409)
T ss_dssp EECSSS--SSTTB-------------CHHHHH-----HHHHHHH-----------------------------------H
T ss_pred EEeCCc--ccccc-------------CHHHHH-----HHHHHHH-----------------------------------H
Confidence 998876 33321 011111 1111111 1
Q ss_pred CCee--ecCCceeeeCCeEEecCCceeeccEEEEccCCCCCCCCCCcc--cccccCCccccccccccCCCCcEEEEcccc
Q psy2398 281 GDIL--PKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE--KLEWKLGIPDLFIHIAPRNLDNIFFFGFVN 356 (433)
Q Consensus 281 ~~v~--~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~ 356 (433)
.+|+ ....|++++++.|.++||+++++|.||+|+|++|+ +++... .+....+++.++..+..+++||||++||++
T Consensus 231 ~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~GD~~ 309 (409)
T 3h8l_A 231 LGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDAN 309 (409)
T ss_dssp HTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECGGGB
T ss_pred CCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCcccccCCCCCEEEeehhc
Confidence 1344 35678899988999999999999999999999998 566544 333345678888877666999999999998
Q ss_pred cc--CChhhHHHHHHHHHHHHHhhhh
Q psy2398 357 AA--AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 357 ~~--~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
.. +.....|+.||+.+|++|.+..
T Consensus 310 ~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 310 SMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp TTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 63 5677889999999999998876
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-30 Score=251.67 Aligned_cols=290 Identities=16% Similarity=0.216 Sum_probs=180.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++++|||||||++|+++|+.|.+.+++|+|||+++.. . |..+...... +....
T Consensus 41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~--~----------~~PlL~~va~---------------G~l~~ 93 (502)
T 4g6h_A 41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF--L----------FTPLLPSAPV---------------GTVDE 93 (502)
T ss_dssp SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE--E----------CGGGGGGTTT---------------TSSCG
T ss_pred CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc--c----------cccchhHHhh---------------ccccH
Confidence 4578999999999999999999999999999997632 1 1111000000 00111
Q ss_pred HHHHHHHHHHHHHcCCCcceE-eCcEEEEEEEeCCeEEEEE------------------ccCcEEEeCEEEEccCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSI-FNTEVINLEQYEDIWEVEL------------------SNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~-~~~~V~~v~~~~~~~~v~~------------------~~g~~~~~d~vIvAtG~~s~p 146 (433)
.++...++.+.....- .+. ...+|+.|+.+.+..++.. .++.++.||++|+|||+ .|
T Consensus 94 ~~i~~p~~~~~~~~~~--~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs--~~ 169 (502)
T 4g6h_A 94 KSIIEPIVNFALKKKG--NVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGA--EP 169 (502)
T ss_dssp GGGEEEHHHHHTTCSS--CEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCC--EE
T ss_pred HHhhhhHHHHHHhhcC--CeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCc--cc
Confidence 1111112222221111 233 3567888887666655543 23457999999999998 88
Q ss_pred CCCCCCC--CCC---CceeccCCCC--------------C--CCCCCCCeEEEEcCCCCHHHHHHHHhccC---------
Q psy2398 147 RYPNYSG--YFS---GEILHSMDYK--------------S--PDQIRNKRVLVVGAGNSGCDIAVDASHHS--------- 196 (433)
Q Consensus 147 ~~p~i~g--~~~---g~~~~~~~~~--------------~--~~~~~~~~v~VvG~G~sg~d~a~~l~~~~--------- 196 (433)
+.|++|| +.. ..+-++..++ . ++.....+++|||+|++|+|+|.+|+..+
T Consensus 170 ~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~ 249 (502)
T 4g6h_A 170 NTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLP 249 (502)
T ss_dssp CCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCH
T ss_pred ccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcc
Confidence 9999998 110 0000000000 0 00011247999999999999999988642
Q ss_pred -----CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccC
Q psy2398 197 -----EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMN 271 (433)
Q Consensus 197 -----~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (433)
.+|+++.+.+. ++|.+ +..+.. .+.+.+. ..|+
T Consensus 250 ~~~~~~~V~lve~~~~-il~~~-------------~~~~~~-----~~~~~L~--------~~GV--------------- 287 (502)
T 4g6h_A 250 ALAEEVQIHLVEALPI-VLNMF-------------EKKLSS-----YAQSHLE--------NTSI--------------- 287 (502)
T ss_dssp HHHHHCEEEEECSSSS-SSTTS-------------CHHHHH-----HHHHHHH--------HTTC---------------
T ss_pred cccccceeEEeccccc-cccCC-------------CHHHHH-----HHHHHHH--------hcce---------------
Confidence 57999988765 33321 122222 2222111 1122
Q ss_pred hhhhhcccCCCeeecCCceeeeCCeEEe----cCCc----eeeccEEEEccCCCCCCCCCCc----ccccc-cCCccccc
Q psy2398 272 SQILYHIGHGDILPKDDIKNLNGNIVHF----VDDT----HIEVDTIIYATGYNRHFPFIDK----EKLEW-KLGIPDLF 338 (433)
Q Consensus 272 ~~~~~~~~~~~v~~~~~v~~~~~~~v~~----~dG~----~~~~D~vi~atG~~~~~~~l~~----~~~~~-~~~~~~~~ 338 (433)
++.....|++++++.+.+ .||+ ++++|.||||+|.+|+ |++.. ..... ..+++.++
T Consensus 288 ----------~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~-~~~~~l~~~~~~~~~~~g~I~Vd 356 (502)
T 4g6h_A 288 ----------KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR-PVITDLFKKIPEQNSSKRGLAVN 356 (502)
T ss_dssp ----------EEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC-HHHHHHHHHSGGGTTCCSSEEBC
T ss_pred ----------eeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC-HHHHhHHHhccccccCCCceeEC
Confidence 344456678888777654 4664 5899999999999998 43321 11122 34677888
Q ss_pred cccccCCCCcEEEEcccccc--CChhhHHHHHHHHHHHHHhhh
Q psy2398 339 IHIAPRNLDNIFFFGFVNAA--AGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 339 ~~~~~~~~p~i~~iG~~~~~--~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+.+..+++||||++|||+.. +...+.|..||+++|++|.+.
T Consensus 357 ~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~~ 399 (502)
T 4g6h_A 357 DFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDKM 399 (502)
T ss_dssp TTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 87777799999999999854 467789999999999998654
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=238.52 Aligned_cols=290 Identities=15% Similarity=0.175 Sum_probs=190.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHh---cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSE---GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~---~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
.+++|+|||||++|+++|..|++ .|++|+|||+.+... |.... +......
T Consensus 3 ~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~------------~~~~~---------------~~~~~g~ 55 (437)
T 3sx6_A 3 GSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ------------FVPSN---------------PWVGVGW 55 (437)
T ss_dssp TSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE------------CGGGH---------------HHHHHTS
T ss_pred CCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc------------ccCCc---------------cccccCc
Confidence 46899999999999999999999 799999999987431 10000 0000022
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCcee
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL 160 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~ 160 (433)
....++...+..++++.++. +. ..+|+.++.+.+ .|+++++.++.||+||+|||+ .|+.|.++| .+.+...
T Consensus 56 ~~~~~~~~~l~~~~~~~gv~--~~-~~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~--~~~~~~ipG~~~~~~~~~ 128 (437)
T 3sx6_A 56 KERDDIAFPIRHYVERKGIH--FI-AQSAEQIDAEAQ--NITLADGNTVHYDYLMIATGP--KLAFENVPGSDPHEGPVQ 128 (437)
T ss_dssp SCHHHHEEECHHHHHTTTCE--EE-CSCEEEEETTTT--EEEETTSCEEECSEEEECCCC--EECGGGSTTCSTTTSSEE
T ss_pred cCHHHHHHHHHHHHHHCCCE--EE-EeEEEEEEcCCC--EEEECCCCEEECCEEEECCCC--CcCcccCCCCCcccCcce
Confidence 33455666667777777773 43 578999886544 678888888999999999998 888888888 2223333
Q ss_pred ccCCCCCCCC--------CCCCeEEEEcCCCCH------HHHHHHHh----ccCCc-----EEEEEecCceeecccCCCC
Q psy2398 161 HSMDYKSPDQ--------IRNKRVLVVGAGNSG------CDIAVDAS----HHSEK-----VYHSTRRGYHYYPKFIDGK 217 (433)
Q Consensus 161 ~~~~~~~~~~--------~~~~~v~VvG~G~sg------~d~a~~l~----~~~~~-----V~~~~r~~~~~~p~~~~~~ 217 (433)
+.+.+.+... .++++++|||+|.+| +|+|..++ +.+.+ |+++.+.+.. .+....+.
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~-~~~~l~~~ 207 (437)
T 3sx6_A 129 SICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYI-GHLGIQGV 207 (437)
T ss_dssp CCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSST-TCTTTTCC
T ss_pred ecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccc-cccccCcc
Confidence 3222222111 114567899997665 88885554 44543 9999987631 11000110
Q ss_pred ChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeCC
Q psy2398 218 PTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN 295 (433)
Q Consensus 218 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~~ 295 (433)
+ . ... .+.+ .+....|+ ....|+++++.
T Consensus 208 ~---------~-~~~-----~~~~-----------------------------------~l~~~gI~~~~~~~v~~v~~~ 237 (437)
T 3sx6_A 208 G---------D-SKG-----ILTK-----------------------------------GLKEEGIEAYTNCKVTKVEDN 237 (437)
T ss_dssp T---------T-HHH-----HHHH-----------------------------------HHHHTTCEEECSEEEEEEETT
T ss_pred h---------H-HHH-----HHHH-----------------------------------HHHHCCCEEEcCCEEEEEECC
Confidence 0 0 000 1111 11111344 34567888888
Q ss_pred eEEecC---------CceeeccEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC-------
Q psy2398 296 IVHFVD---------DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA------- 359 (433)
Q Consensus 296 ~v~~~d---------G~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~------- 359 (433)
.+.+.+ +.++++|.+++|+|++++.++.+.+.+..+.+++.+++.+..+++||||++|||+..+
T Consensus 238 ~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~ 317 (437)
T 3sx6_A 238 KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPV 317 (437)
T ss_dssp EEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSS
T ss_pred eEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcC
Confidence 877765 6679999999999999875544433443355778888877666999999999998632
Q ss_pred -----ChhhHHHHHHHHHHHHHhhhh
Q psy2398 360 -----GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 360 -----~~~~~a~~qa~~~a~~i~g~~ 380 (433)
.....|..||+.+|.+|...+
T Consensus 318 ~~~~pk~~~~A~~qg~~aA~ni~~~l 343 (437)
T 3sx6_A 318 PTGAPKTGYMIESMVSAAVHNIKADL 343 (437)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999997543
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-29 Score=241.94 Aligned_cols=299 Identities=17% Similarity=0.195 Sum_probs=181.6
Q ss_pred CCcEEEECCChHHHHHHHHHHh-c------CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE-G------NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNY 79 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~-~------g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (433)
+++|+|||||++|+.+|..|++ . |.+|+|||+.+.+||.|.+.. .
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv-----~----------------------- 54 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGV-----A----------------------- 54 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTS-----C-----------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcccccc-----C-----------------------
Confidence 4799999999999999999999 7 999999999988998886541 0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCc
Q psy2398 80 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE 158 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~ 158 (433)
+.++...++..++..++++.++ +++.++.+ +. .|++.++ .+.||+||+|||+. .|+.|++|| .+.+
T Consensus 55 p~~~~~~~~~~~~~~~~~~~~v--~~~~~v~v------~~--~v~~~~~-~~~~d~lViAtG~~-~~~~~~ipG~~~~g- 121 (456)
T 1lqt_A 55 PDHPKIKSISKQFEKTAEDPRF--RFFGNVVV------GE--HVQPGEL-SERYDAVIYAVGAQ-SDRMLNIPGEDLPG- 121 (456)
T ss_dssp TTCTGGGGGHHHHHHHHTSTTE--EEEESCCB------TT--TBCHHHH-HHHSSEEEECCCCC-EECCCCCTTTTSTT-
T ss_pred CCCCCHHHHHHHHHHHHhcCCC--EEEeeEEE------CC--EEEECCC-eEeCCEEEEeeCCC-CCCCCCCCCCCCCC-
Confidence 1223344566777777776665 34445332 11 2344444 37899999999982 267778888 4443
Q ss_pred eeccCCC-----------CCCCCCCCCeEEEEcCCCCHHHHHHHHhcc---------------------CCcEEEEEecC
Q psy2398 159 ILHSMDY-----------KSPDQIRNKRVLVVGAGNSGCDIAVDASHH---------------------SEKVYHSTRRG 206 (433)
Q Consensus 159 ~~~~~~~-----------~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~---------------------~~~V~~~~r~~ 206 (433)
++++.++ ++...+.+++|+|||+|++|+|+|..|++. .++|+++.|++
T Consensus 122 v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~ 201 (456)
T 1lqt_A 122 SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 201 (456)
T ss_dssp EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence 4433322 233345789999999999999999999974 36999999987
Q ss_pred ceeecccCCCCChhHHh--Hhhc--------hhhc-C--------chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCC
Q psy2398 207 YHYYPKFIDGKPTPQWM--LQLG--------NKFS-S--------KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAH 267 (433)
Q Consensus 207 ~~~~p~~~~~~~~~~~~--~~~p--------~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (433)
... +.+. ..++. ..+| ..+. . +....+..+.+.+....... +.
T Consensus 202 ~~~-~~f~----~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~------- 263 (456)
T 1lqt_A 202 PLQ-AAFT----TLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPR------PG------- 263 (456)
T ss_dssp GGG-CCCC----HHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-C------TT-------
T ss_pred hhh-hccC----hHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCC------CC-------
Confidence 422 1110 00000 0011 0110 0 00000112222222221100 00
Q ss_pred CccChhhhhcccCCCeee--cCCceeeeCC----eEEec----------------CC--ceeeccEEEEccCCCCCCCCC
Q psy2398 268 PIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFV----------------DD--THIEVDTIIYATGYNRHFPFI 323 (433)
Q Consensus 268 ~~~~~~~~~~~~~~~v~~--~~~v~~~~~~----~v~~~----------------dG--~~~~~D~vi~atG~~~~~~~l 323 (433)
..+|.+ ...+.++.+. .|.+. +| +++++|.||+|+||+|+. +
T Consensus 264 ------------~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l- 329 (456)
T 1lqt_A 264 ------------HRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T- 329 (456)
T ss_dssp ------------SEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C-
T ss_pred ------------CceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-C-
Confidence 002222 1223333221 23332 45 358999999999999985 3
Q ss_pred Ccccccc-cCCccccccccccCCCCcEEEEccccccCC-hhhHHHHHHHHHHHHHhhhh
Q psy2398 324 DKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 324 ~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~-~~~~a~~qa~~~a~~i~g~~ 380 (433)
. .+.. ..+++.+++....++.|+||++|||...+. .+..+..||+.+|.+|.+..
T Consensus 330 ~--gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 330 P--GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp T--TSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred C--CCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 2 2333 234566666655478999999999986443 45678899999998886553
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-28 Score=252.19 Aligned_cols=270 Identities=13% Similarity=0.085 Sum_probs=189.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++||+|||||++|+++|..|++.|++|+|||+.+.+||.|.... ..+.+...
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~---------------------------~~p~~~~~ 442 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQES---------------------------ALPGLSAW 442 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHH---------------------------TSTTCGGG
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeecc---------------------------CCCchhHH
Confidence 457999999999999999999999999999999999999876520 01122334
Q ss_pred HHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC------CCCCCCCCCCCCc
Q psy2398 86 SMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV------ARYPNYSGYFSGE 158 (433)
Q Consensus 86 ~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~------p~~p~i~g~~~g~ 158 (433)
.++.+|+...++++ ++ .+++++.| +..++..+.||+||+|||+... |..|+++|.....
T Consensus 443 ~~~~~~~~~~~~~~~gv--~~~~~~~v------------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~ 508 (690)
T 3k30_A 443 GRVKEYREAVLAELPNV--EIYRESPM------------TGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQ 508 (690)
T ss_dssp GHHHHHHHHHHHTCTTE--EEESSCCC------------CHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSE
T ss_pred HHHHHHHHHHHHHcCCC--EEEECCee------------cHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCc
Confidence 66778888888876 65 35656543 1223345789999999999432 5678888833345
Q ss_pred eeccCCCCCCCCCCCCeEEEEc--CCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHH
Q psy2398 159 ILHSMDYKSPDQIRNKRVLVVG--AGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 236 (433)
Q Consensus 159 ~~~~~~~~~~~~~~~~~v~VvG--~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (433)
++++.++.......+++|+||| +|.+|+|+|..|.+.+.+|+++.+.+.. .+... +..+..
T Consensus 509 v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l-~~~~~------------~~~~~~---- 571 (690)
T 3k30_A 509 VLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV-SSWTN------------NTFEVN---- 571 (690)
T ss_dssp EECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST-TGGGG------------GGTCHH----
T ss_pred EEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc-ccccc------------cchhHH----
Confidence 6666665555556788999999 9999999999999999999999987642 11100 000000
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEec-----CCceeeccEEE
Q psy2398 237 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFV-----DDTHIEVDTII 311 (433)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~-----dG~~~~~D~vi 311 (433)
.+.+.+. ..++ ++.....|.++++.++.+. +++++++|.||
T Consensus 572 -~l~~~l~--------~~GV-------------------------~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV 617 (690)
T 3k30_A 572 -RIQRRLI--------ENGV-------------------------ARVTDHAVVAVGAGGVTVRDTYASIERELECDAVV 617 (690)
T ss_dssp -HHHHHHH--------HTTC-------------------------EEEESEEEEEEETTEEEEEETTTCCEEEEECSEEE
T ss_pred -HHHHHHH--------HCCC-------------------------EEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEE
Confidence 1111111 0111 3334556778877665543 45579999999
Q ss_pred EccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 312 YATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 312 ~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+|||++|+..+++..... +. .++.|+||++|||.... .+..|..||+.+|.+|.+.
T Consensus 618 ~A~G~~p~~~l~~~l~~~---~~--------~t~~~~VyaiGD~~~~~-~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 618 MVTARLPREELYLDLVAR---RD--------AGEIASVRGIGDAWAPG-TIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp EESCEEECCHHHHHHHHH---HH--------HTSCSEEEECGGGTSCB-CHHHHHHHHHHHHHHTTCC
T ss_pred ECCCCCCChHHHHHHhhh---hc--------ccCCCCEEEEeCCCchh-hHHHHHHHHHHHHHHHHhh
Confidence 999999998766531111 00 67899999999998744 4456999999999999876
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-29 Score=248.76 Aligned_cols=307 Identities=14% Similarity=0.178 Sum_probs=185.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCc-cccceEeecCCCcccCCCCCCCCCC---
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGR-VYPSLHLISPKFNTQVPDYPMPDNY--- 79 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--- 79 (433)
..+||+|||||++|+++|..|++. |.+|+|||+.+.++.... +.+. .+....... .....|..++.....
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~---~lsk~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 85 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP---PLSKELWFSDDPNV-TKTLRFKQWNGKERSIYF 85 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG---GGGTGGGCC--CTH-HHHCEEECTTSCEEESBS
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCC---CCCHHhhcCCccch-hhcccccccccccccccc
Confidence 457999999999999999999887 889999999876541110 0000 000000000 000001011000000
Q ss_pred ---CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCC-
Q psy2398 80 ---PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYF- 155 (433)
Q Consensus 80 ---~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~- 155 (433)
..+....++.+ ..+.++ .++++++|+.++.+. ++|++.+|.++.||+||+|||+ .|+.|++++..
T Consensus 86 ~~~~~~~~~~~l~~-----~~~~gv--~~~~g~~v~~id~~~--~~V~~~~g~~i~yd~lviATGs--~p~~~~~~~~~~ 154 (493)
T 1m6i_A 86 QPPSFYVSAQDLPH-----IENGGV--AVLTGKKVVQLDVRD--NMVKLNDGSQITYEKCLIATGG--TPRSLSAIDRAG 154 (493)
T ss_dssp SCGGGSBCTTTTTT-----STTCEE--EEEETCCEEEEEGGG--TEEEETTSCEEEEEEEEECCCE--EECCCHHHHTSC
T ss_pred cchHhhcchhhhhh-----hhcCCe--EEEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCC--CCCCCCCccccc
Confidence 00111111000 112344 467788999988643 4678888888999999999998 77777655411
Q ss_pred ---CCceeccCCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhc----cCCcEEEEEecCceeecccCCCCChhHHh
Q psy2398 156 ---SGEILHSMDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASH----HSEKVYHSTRRGYHYYPKFIDGKPTPQWM 223 (433)
Q Consensus 156 ---~g~~~~~~~~~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~----~~~~V~~~~r~~~~~~p~~~~~~~~~~~~ 223 (433)
...+.......+.. ...+++|+|||+|.+|+|+|..|++ .+.+|+++.+++.+ +++.
T Consensus 155 ~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-~~~~---------- 223 (493)
T 1m6i_A 155 AEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MGKI---------- 223 (493)
T ss_dssp HHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TTTT----------
T ss_pred ccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-cccc----------
Confidence 11121111111100 1247899999999999999999987 36789998876531 1111
Q ss_pred HhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--eEEe
Q psy2398 224 LQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHF 299 (433)
Q Consensus 224 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~v~~ 299 (433)
+|..+.. .+.+ .+. ..++ ++.....|+++.+ . .|.+
T Consensus 224 --l~~~~~~-----~~~~----~l~----~~GV-------------------------~v~~~~~V~~i~~~~~~~~v~l 263 (493)
T 1m6i_A 224 --LPEYLSN-----WTME----KVR----REGV-------------------------KVMPNAIVQSVGVSSGKLLIKL 263 (493)
T ss_dssp --SCHHHHH-----HHHH----HHH----TTTC-------------------------EEECSCCEEEEEEETTEEEEEE
T ss_pred --CCHHHHH-----HHHH----HHH----hcCC-------------------------EEEeCCEEEEEEecCCeEEEEE
Confidence 1111111 1111 111 1111 2333456676642 2 4678
Q ss_pred cCCceeeccEEEEccCCCCCCCCCCccccccc--CCccccccccccCCCCcEEEEccccccC---------ChhhHHHHH
Q psy2398 300 VDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVNAAA---------GLGDGLRLQ 368 (433)
Q Consensus 300 ~dG~~~~~D~vi~atG~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~p~i~~iG~~~~~~---------~~~~~a~~q 368 (433)
.||+++++|.||+|+|++|+..+++...+..+ .+++.++..+ .+ .|+||++|||+... ..+..|..|
T Consensus 264 ~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l-~t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~q 341 (493)
T 1m6i_A 264 KDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAEL-QA-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVS 341 (493)
T ss_dssp TTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTC-EE-ETTEEECGGGEEEEETTTEEECCCCHHHHHHH
T ss_pred CCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCc-cc-CCCeeEeeeeEeccCcccCccccchHHHHHHH
Confidence 89999999999999999999988876556554 3567666654 44 69999999998531 235689999
Q ss_pred HHHHHHHHhhhh
Q psy2398 369 GQFIRSYIQAFI 380 (433)
Q Consensus 369 a~~~a~~i~g~~ 380 (433)
|+.+|.++.|..
T Consensus 342 g~~aa~ni~g~~ 353 (493)
T 1m6i_A 342 GRLAGENMTGAA 353 (493)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHhcCCC
Confidence 999999999863
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-28 Score=248.27 Aligned_cols=279 Identities=16% Similarity=0.153 Sum_probs=180.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+||+|||||++|+++|..|++.|++|+|||+.+.+||.|.+.. .++ .+...
T Consensus 388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~----~~p-----------------------g~~~~ 440 (729)
T 1o94_A 388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA----ALP-----------------------GLGEW 440 (729)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHT----TST-----------------------TCGGG
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecc----cCC-----------------------ChHHH
Confidence 357999999999999999999999999999999999999887631 011 11223
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC------CCCCCCCC--CCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV------ARYPNYSG--YFSG 157 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~------p~~p~i~g--~~~g 157 (433)
..+.+|+...++.+. ..+..++.+.. + ..++++++..+.||+||+|||+... |..|+++| .+..
T Consensus 441 ~~~~~~~~~~i~~~~-----~~~~~~v~i~~-~--~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~ 512 (729)
T 1o94_A 441 SYHRDYRETQITKLL-----KKNKESQLALG-Q--KPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLP 512 (729)
T ss_dssp HHHHHHHHHHHHHHH-----HHSTTCEEECS-C--CCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTST
T ss_pred HHHHHHHHHHHHHhh-----cccCCceEEEe-C--eEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCC
Confidence 455566655555430 00111111111 1 1233344445789999999999432 56788888 3345
Q ss_pred ceeccCCCCCCCCCCCCeEEEEc--CCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchH
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVG--AGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 235 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG--~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~ 235 (433)
.++++.++.......+++|+||| +|.+|+|+|..|++.+.+|+++.+++ +.++.. ++.. ..
T Consensus 513 ~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~--l~~~~~-----------~~~~-~~--- 575 (729)
T 1o94_A 513 DQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH--LANYMH-----------FTLE-YP--- 575 (729)
T ss_dssp TEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC--TTHHHH-----------HTTC-HH---
T ss_pred CEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc--cccccc-----------cccc-HH---
Confidence 56666555444455689999999 99999999999999999999999886 222100 0000 00
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEe----cCC-ce------
Q psy2398 236 TMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHF----VDD-TH------ 304 (433)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~----~dG-~~------ 304 (433)
.+.+.+. ..++ ++.....+.++.+..+.+ .++ ++
T Consensus 576 --~~~~~l~--------~~GV-------------------------~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~ 620 (729)
T 1o94_A 576 --NMMRRLH--------ELHV-------------------------EELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPG 620 (729)
T ss_dssp --HHHHHHH--------HTTC-------------------------EEECSEEEEEEETTEEEEEETTCSCSCCCCCCTT
T ss_pred --HHHHHHH--------hCCC-------------------------EEEcCcEEEEEECCeEEEEEecCCceEEeccccc
Confidence 1111111 0111 122233455555544433 232 22
Q ss_pred ------------eeccEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHH
Q psy2398 305 ------------IEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 372 (433)
Q Consensus 305 ------------~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~ 372 (433)
+++|.||+|+|++|+..+++... . .. +..+.++.|+||++|||.. +..+..|..||+.+
T Consensus 621 ~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~--~-----~v-d~~~~t~~~~VyAiGD~~~-~~~~~~A~~~G~~a 691 (729)
T 1o94_A 621 VSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELK--A-----RE-SEWAENDIKGIYLIGDAEA-PRLIADATFTGHRV 691 (729)
T ss_dssp SCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHH--H-----TG-GGTGGGTCCEEEECGGGTS-CCCHHHHHHHHHHH
T ss_pred ccccccCCcceeeeCCEEEECCCCCCChHHHHHHh--h-----hc-ccccccCCCCeEEEeCccc-hhhHHHHHHHHHHH
Confidence 89999999999999988765211 1 11 2345678999999999986 45566799999999
Q ss_pred HHHHhhhh
Q psy2398 373 RSYIQAFI 380 (433)
Q Consensus 373 a~~i~g~~ 380 (433)
|.+|.+..
T Consensus 692 A~~i~~~l 699 (729)
T 1o94_A 692 AREIEEAN 699 (729)
T ss_dssp HHTTTSSC
T ss_pred HHHhhhhc
Confidence 99997753
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-27 Score=233.33 Aligned_cols=163 Identities=19% Similarity=0.301 Sum_probs=115.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
..+++|+|||||++|+.+|..|++.| .+|+|||+.+.+||.|.+.. . +.+
T Consensus 4 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~-----~-----------------------p~~ 55 (460)
T 1cjc_A 4 EQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGV-----A-----------------------PDH 55 (460)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTS-----C-----------------------TTC
T ss_pred CCCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeeccc-----C-----------------------CCC
Confidence 34689999999999999999999998 89999999998888886541 0 112
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceec
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILH 161 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~ 161 (433)
+...++..++.+++++.++ .+++++.|. . .|++.+. .+.||+||+|||+. .++.|++|| ...+ +++
T Consensus 56 ~~~~~~~~~~~~~~~~~gv--~~~~~~~v~------~--~V~~~~~-~~~~d~lVlAtGs~-~~~~~~ipG~~~~g-v~~ 122 (460)
T 1cjc_A 56 PEVKNVINTFTQTARSDRC--AFYGNVEVG------R--DVTVQEL-QDAYHAVVLSYGAE-DHQALDIPGEELPG-VFS 122 (460)
T ss_dssp GGGGGHHHHHHHHHTSTTE--EEEBSCCBT------T--TBCHHHH-HHHSSEEEECCCCC-EECCCCCTTTTSTT-EEE
T ss_pred ccHHHHHHHHHHHHHhCCc--EEEeeeEEe------e--EEEeccc-eEEcCEEEEecCcC-CCCCCCCCCCCCCc-EEE
Confidence 2234566777777777776 466665541 1 2333332 36899999999993 247788888 4333 333
Q ss_pred cCCC----------CCCC-CCCCCeEEEEcCCCCHHHHHHHHh--------------------ccCC-cEEEEEecCce
Q psy2398 162 SMDY----------KSPD-QIRNKRVLVVGAGNSGCDIAVDAS--------------------HHSE-KVYHSTRRGYH 208 (433)
Q Consensus 162 ~~~~----------~~~~-~~~~~~v~VvG~G~sg~d~a~~l~--------------------~~~~-~V~~~~r~~~~ 208 (433)
+.++ .... .+.+++|+|||+|++|+|+|..|+ +.+. +|+++.|++..
T Consensus 123 ~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~ 201 (460)
T 1cjc_A 123 ARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL 201 (460)
T ss_dssp HHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred HHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence 3222 1211 346899999999999999999999 4454 79999998753
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=246.88 Aligned_cols=279 Identities=14% Similarity=0.143 Sum_probs=186.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.+||+|||||++|+++|..|++.|++|+|||+.+.+||+|. ..+ ... ++ . ....
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~-~~~------k~~---------i~---------~-~~~~ 181 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL-DTA------GEQ---------ID---------G-MDSS 181 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG-GSS------CCE---------ET---------T-EEHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec-cCC------ccc---------cC---------C-CCHH
Confidence 46899999999999999999999999999999999999887 310 000 00 0 1123
Q ss_pred HHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCC---------eEEEEE------ccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED---------IWEVEL------SNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 87 ~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~---------~~~v~~------~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
++...+.+....+ ++ .++.+++|..+...+. .+.+.+ .++..+.||+||+|||+ .|+.|+
T Consensus 182 ~~~~~~~~~l~~~~~v--~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs--~p~~~~ 257 (965)
T 2gag_A 182 AWIEQVTSELAEAEET--THLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA--HERPIV 257 (965)
T ss_dssp HHHHHHHHHHHHSTTE--EEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE--EECCCC
T ss_pred HHHHHHHHHHhhcCCc--EEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCC--ccCCCC
Confidence 4444444444444 55 4777888888764221 111211 11235899999999998 788888
Q ss_pred CCC-CCCCceeccCCC---C-CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 151 YSG-YFSGEILHSMDY---K-SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 151 i~g-~~~g~~~~~~~~---~-~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
++| ...+ ++++..+ . .....++++|+|||+|.+|+|+|..|++.|.+|+++.+++... +
T Consensus 258 ipG~~~~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~-~-------------- 321 (965)
T 2gag_A 258 FENNDRPG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS-A-------------- 321 (965)
T ss_dssp CBTCCSTT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC-H--------------
T ss_pred CCCCCCCC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc-h--------------
Confidence 988 4333 3333211 1 1123457899999999999999999999999999999886421 0
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C----eEEe
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N----IVHF 299 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~----~v~~ 299 (433)
. .+.+. ..++ ++.....+.++.+ . .|.+
T Consensus 322 ------------~-~~~l~--------~~GV-------------------------~v~~~~~v~~i~~~~~~~v~~v~~ 355 (965)
T 2gag_A 322 ------------A-AAQAV--------ADGV-------------------------QVISGSVVVDTEADENGELSAIVV 355 (965)
T ss_dssp ------------H-HHHHH--------HTTC-------------------------CEEETEEEEEEEECTTSCEEEEEE
T ss_pred ------------h-HHHHH--------hCCe-------------------------EEEeCCEeEEEeccCCCCEEEEEE
Confidence 0 00000 1112 3333444555543 1 4666
Q ss_pred cC-------C--ceeeccEEEEccCCCCCCCCCCcccccccCCccccccccc----cCCCCcEEEEccccccCChhhHHH
Q psy2398 300 VD-------D--THIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA----PRNLDNIFFFGFVNAAAGLGDGLR 366 (433)
Q Consensus 300 ~d-------G--~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~p~i~~iG~~~~~~~~~~~a~ 366 (433)
.+ | +++++|.||+|+|++|+..++... ++.+.+++.+. .++.|+||++|||+....+ ..|.
T Consensus 356 ~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l-~~A~ 429 (965)
T 2gag_A 356 AELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDT-ASAL 429 (965)
T ss_dssp EEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSCCTTEEECGGGGTCCSH-HHHH
T ss_pred EeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCCCCCEEEEEecCCchhH-HHHH
Confidence 54 5 568999999999999998876532 23333333322 3789999999999876555 4899
Q ss_pred HHHHHHHHHHhhhhcCC
Q psy2398 367 LQGQFIRSYIQAFIRKS 383 (433)
Q Consensus 367 ~qa~~~a~~i~g~~~lp 383 (433)
.||+.+|.++.+.....
T Consensus 430 ~~G~~aA~~i~~~lg~~ 446 (965)
T 2gag_A 430 STGAATGAAAATAAGFA 446 (965)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-27 Score=239.21 Aligned_cols=289 Identities=15% Similarity=0.165 Sum_probs=177.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++||+|||||++|+++|..|++.|++|+|||+.+.+||.|.... .. +.....
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~----~~-----------------------~~~~~~ 424 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK----QI-----------------------PGKEEF 424 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT----TS-----------------------TTCTTH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccc----cC-----------------------CCHHHH
Confidence 357999999999999999999999999999999999999876430 00 011123
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEE-EeCEEEEccCCCCCCCCCCCCCCCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK-KYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~-~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~ 164 (433)
.++.+++...++++++ .+++++.|.. ..+ .||+||+|||+ .|+.|+++|.-...+++..+
T Consensus 425 ~~~~~~~~~~~~~~gv--~~~~~~~v~~---------------~~~~~~d~lviAtG~--~p~~~~i~G~~~~~v~~~~~ 485 (671)
T 1ps9_A 425 YETLRYYRRMIEVTGV--TLKLNHTVTA---------------DQLQAFDETILASGI--VPRTPPIDGIDHPKVLSYLD 485 (671)
T ss_dssp HHHHHHHHHHHHHHTC--EEEESCCCCS---------------SSSCCSSEEEECCCE--EECCCCCBTTTSTTEEEHHH
T ss_pred HHHHHHHHHHHHHcCC--EEEeCcEecH---------------HHhhcCCEEEEccCC--CcCCCCCCCCCCCcEeeHHH
Confidence 4556677777777787 4777765421 124 89999999998 88999999832234555554
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec--CceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 165 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR--GYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 165 ~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~--~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
+.......+++|+|||+|.+|+|+|..|++.|.+|+++... ..|-......... .+....|..
T Consensus 486 ~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~--~~~~~~~~~------------- 550 (671)
T 1ps9_A 486 VLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAG--GLSPQGMQI------------- 550 (671)
T ss_dssp HHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGG--GBCTTCCCC-------------
T ss_pred HhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccc--ccccccccc-------------
Confidence 44444566899999999999999999999988766542100 0000000000000 000000000
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCC--CCCccChhhhhcccCCCeee--cCCceeeeCCeEEe-cCC--ceeeccEEEEccC
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDA--AHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHF-VDD--THIEVDTIIYATG 315 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~~v~~-~dG--~~~~~D~vi~atG 315 (433)
.......-+..+...... ..+.....+.+.+....|++ ...++++++.++.+ .+| +++++|.||+|+|
T Consensus 551 -----~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G 625 (671)
T 1ps9_A 551 -----PRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG 625 (671)
T ss_dssp -----CCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCC
T ss_pred -----CCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCC
Confidence 000000000000000000 00001111223333335554 45577888777777 688 5699999999999
Q ss_pred CCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCC-hhhHHHHHHHHHHHHH
Q psy2398 316 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYI 376 (433)
Q Consensus 316 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~-~~~~a~~qa~~~a~~i 376 (433)
++|+..+++.. ....++||++|||..... ....|..||+.+|.+|
T Consensus 626 ~~p~~~l~~~l----------------~~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 626 QEPNRALAQPL----------------IDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp EEECCTTHHHH----------------HTTTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHH----------------HhcCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 99998876521 112378999999986543 4678999999999864
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=211.52 Aligned_cols=293 Identities=13% Similarity=0.104 Sum_probs=176.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||||++|+++|..|++.+ .+|+|||+++..... + .+... ..... .
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~-----p---~~~~v----~~g~~---------------~ 54 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC-----Y---MSNEV----IGGDR---------------E 54 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS-----T---THHHH----HHTSS---------------C
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc-----c---CHHHH----hcCCC---------------C
Confidence 368999999999999999998875 589999987642110 0 00000 00000 0
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCC-Cceec
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFS-GEILH 161 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~-g~~~~ 161 (433)
..++..-+.. ....++. ....+|+.|+++.+ ++++.++.++.||+||+|||+ .+..|+++| ... ....|
T Consensus 55 ~~~~~~~~~~-~~~~gv~---~i~~~v~~id~~~~--~v~~~~g~~i~yd~LviAtG~--~~~~~~i~G~~e~~~~~~~~ 126 (401)
T 3vrd_B 55 LASLRVGYDG-LRAHGIQ---VVHDSALGIDPDKK--LVKTAGGAEFAYDRCVVAPGI--DLLYDKIEGYSEALAAKLPH 126 (401)
T ss_dssp GGGGEECSHH-HHHTTCE---EECSCEEEEETTTT--EEEETTSCEEECSEEEECCCE--EECGGGSBTCCSGGGGTSCC
T ss_pred HHHHhhCHHH-HHHCCCE---EEEeEEEEEEccCc--EEEecccceeecceeeeccCC--ccccCCccCchhhcccCccc
Confidence 0000000111 2234552 33568888887444 677888889999999999998 888888888 211 12223
Q ss_pred cCCCCCC--------CCCCCCeEEEEcCCCC-------HHH----HHHHHhcc--CCcEEEEEecCceeecccCCCCChh
Q psy2398 162 SMDYKSP--------DQIRNKRVLVVGAGNS-------GCD----IAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTP 220 (433)
Q Consensus 162 ~~~~~~~--------~~~~~~~v~VvG~G~s-------g~d----~a~~l~~~--~~~V~~~~r~~~~~~p~~~~~~~~~ 220 (433)
+....+. ..+.....+|+++|.. +.| ++..+.+. ..+|+++.+.+.....
T Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~--------- 197 (401)
T 3vrd_B 127 AWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQ--------- 197 (401)
T ss_dssp CSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTH---------
T ss_pred eeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEccccccccc---------
Confidence 2221111 1123344455554432 334 44444433 4678888766532100
Q ss_pred HHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee----CCe
Q psy2398 221 QWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN----GNI 296 (433)
Q Consensus 221 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~----~~~ 296 (433)
. .+.+.+.+.+....+..++ ++.....+..++ ...
T Consensus 198 -------~---------~~~~~~~~~~~~~l~~~gi-------------------------~v~~~~~v~~v~~~~~~~~ 236 (401)
T 3vrd_B 198 -------A---------QFTKGWERLYGFGTENALI-------------------------EWHPGPDAAVVKTDTEAMT 236 (401)
T ss_dssp -------H---------HHHHHHHHHSCTTSTTCSE-------------------------EEECTTTTCEEEEETTTTE
T ss_pred -------c---------cccHHHHHHHHHHHHhcCc-------------------------EEEeCceEEEEEecccceE
Confidence 0 1222222222222222222 233344454443 356
Q ss_pred EEecCCceeeccEEEEccCCCCCCCCCCcccccccCCccccccc-cccCCCCcEEEEcccccc---CChhhHHHHHHHHH
Q psy2398 297 VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIH-IAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFI 372 (433)
Q Consensus 297 v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~p~i~~iG~~~~~---~~~~~~a~~qa~~~ 372 (433)
+.+.||+++++|.+++++|.+|+ +++....+..+.+++.+++. +..+++||||++|||+.. +...+.|..||+.+
T Consensus 237 v~~~~g~~i~~D~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~ 315 (401)
T 3vrd_B 237 VETSFGETFKAAVINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVA 315 (401)
T ss_dssp EEETTSCEEECSEEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHH
T ss_pred EEcCCCcEEEeeEEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHH
Confidence 88999999999999999999987 66665666556678888877 567899999999999753 34567899999999
Q ss_pred HHHHh----hhhcCCCc
Q psy2398 373 RSYIQ----AFIRKSKG 385 (433)
Q Consensus 373 a~~i~----g~~~lp~~ 385 (433)
|++|. |+...|..
T Consensus 316 A~ni~~~l~G~~~~~~~ 332 (401)
T 3vrd_B 316 AAAVVALLKGEEPGTPS 332 (401)
T ss_dssp HHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHhcCCCCCCcc
Confidence 99886 44444544
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=238.96 Aligned_cols=291 Identities=17% Similarity=0.200 Sum_probs=176.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+||+||||||+|+++|..|++.|+ +|+|||+.+.+||.+.+..+ .+...
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip-----------------------------~~~~~ 237 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIP-----------------------------QFRLP 237 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSC-----------------------------TTTSC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCC-----------------------------cccCC
Confidence 4699999999999999999999999 79999999899998755411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCC-CC-CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY-SG-YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i-~g-~~~g~~~~~~ 163 (433)
.++.++..++.+++++ .+++++.+.. ..+++.++..+.||+||+|||+. .|+.+++ +| .....++++.
T Consensus 238 ~~~~~~~~~~~~~~gv--~~~~~~~v~~-------~~v~~~~~~~~~~d~vvlAtGa~-~p~~l~~~~G~~~~~gv~~a~ 307 (1025)
T 1gte_A 238 YDVVNFEIELMKDLGV--KIICGKSLSE-------NEITLNTLKEEGYKAAFIGIGLP-EPKTDDIFQGLTQDQGFYTSK 307 (1025)
T ss_dssp HHHHHHHHHHHHTTTC--EEEESCCBST-------TSBCHHHHHHTTCCEEEECCCCC-EECCCGGGTTCCTTTTEEEHH
T ss_pred HHHHHHHHHHHHHCCc--EEEcccEecc-------ceEEhhhcCccCCCEEEEecCCC-CCCCCCCCCCCCCCCCEEEhH
Confidence 3455666667777777 4777765521 12333344447899999999983 3554443 33 1111233222
Q ss_pred CC--------------CC-CCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 164 DY--------------KS-PDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 164 ~~--------------~~-~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
++ .. .....+++|+|||+|.+|+|+|..+.+.|. +||+++|++...+|...
T Consensus 308 ~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~------------- 374 (1025)
T 1gte_A 308 DFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVP------------- 374 (1025)
T ss_dssp HHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCH-------------
T ss_pred HHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCH-------------
Confidence 11 11 112236799999999999999999999985 89999998743333210
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc-cCCCee-ecCCceeee--CCeEEecCC-
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDIL-PKDDIKNLN--GNIVHFVDD- 302 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~v~~~~--~~~v~~~dG- 302 (433)
...+... ..++. ...+....+.. ..+++. +.-.-.+.+ +..+.. +|
T Consensus 375 ----------~e~~~~~--------~~Gv~----------~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~-~g~ 425 (1025)
T 1gte_A 375 ----------EEVELAK--------EEKCE----------FLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNED-EDQ 425 (1025)
T ss_dssp ----------HHHHHHH--------HTTCE----------EECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEE-EEE
T ss_pred ----------HHHHHHH--------HcCCE----------EEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccC-CCc
Confidence 0001100 00110 00000000000 011111 000000000 111111 22
Q ss_pred -ceeeccEEEEccCCCCC-CCCCCc-cccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 303 -THIEVDTIIYATGYNRH-FPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 303 -~~~~~D~vi~atG~~~~-~~~l~~-~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
.++++|.||+|+|++|+ ..++.. ..+..+ .+++.+++..+.|+.|+||++||+...+.....|..||+.+|.+|.+
T Consensus 426 ~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~ 505 (1025)
T 1gte_A 426 IVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHK 505 (1025)
T ss_dssp EEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 35899999999999875 344432 234443 45677766566889999999999998667778899999999999975
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-25 Score=215.49 Aligned_cols=256 Identities=17% Similarity=0.212 Sum_probs=173.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
++||+|||||++|+++|..|++. .+|+|||+.+.+||.|.... +. ...+ +. ...
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~-----~~---------~~g~---------~~--~~~ 161 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKG-----IK---------QEGF---------NK--DSR 161 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTC-----SE---------ETTT---------TE--EHH
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccc-----cc---------cCCC---------CC--CHH
Confidence 36899999999999999999999 99999999999999877541 00 0000 01 223
Q ss_pred HHHHHHHHHHHHc--CCCcceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEccCCCCCCCCCCCCC-CCCCcee
Q psy2398 87 MMLDYLRSYAKKF--DVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL 160 (433)
Q Consensus 87 ~~~~~l~~~~~~~--~~~~~i~~~~~V~~v~~~~~~~~v~~-~~g~--~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~ 160 (433)
++. ..+.+.+ ++ .++++++|..++.+++.+.+.. .++. .+.||+||+|||+ .|..|+++| ...+ ++
T Consensus 162 ~~~---~~l~~~l~~~v--~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa--~~~~~~~~g~~~~g-v~ 233 (493)
T 1y56_A 162 KVV---EELVGKLNENT--KIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGA--IDSTMLFENNDMPG-VF 233 (493)
T ss_dssp HHH---HHHHHTCCTTE--EEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCE--EECCCCCTTTTSTT-EE
T ss_pred HHH---HHHHHHHhcCC--EEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCC--CccCCCCCCCCCCC-EE
Confidence 333 3333333 44 4677899999988766666654 3443 5899999999998 788888888 4333 33
Q ss_pred ccCCCC---C-CCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHH
Q psy2398 161 HSMDYK---S-PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 236 (433)
Q Consensus 161 ~~~~~~---~-~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (433)
+..++. . ....++++++|+|+|.+|+| ..+.+.|-+++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~vvViGgG~~gle--~~l~~~GV~v~~----------------------------------- 276 (493)
T 1y56_A 234 RRDFALEVMNVWEVAPGRKVAVTGSKADEVI--QELERWGIDYVH----------------------------------- 276 (493)
T ss_dssp EHHHHHHHHHTSCBCSCSEEEEESTTHHHHH--HHHHHHTCEEEE-----------------------------------
T ss_pred EcHHHHHHHHhcccCCCCEEEEECCCHHHHH--HHHHhCCcEEEe-----------------------------------
Confidence 222111 0 11345789999999999998 333333333221
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEEecCCceeeccEEEE
Q psy2398 237 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFVDDTHIEVDTIIY 312 (433)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~~~dG~~~~~D~vi~ 312 (433)
...+.++.+ ..+.+++|+++++|.||+
T Consensus 277 -------------------------------------------------~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~ 307 (493)
T 1y56_A 277 -------------------------------------------------IPNVKRVEGNEKVERVIDMNNHEYKVDALIF 307 (493)
T ss_dssp -------------------------------------------------CSSEEEEECSSSCCEEEETTCCEEECSEEEE
T ss_pred -------------------------------------------------CCeeEEEecCCceEEEEeCCCeEEEeCEEEE
Confidence 112222221 235678899999999999
Q ss_pred ccCCCCCCCCCCcccccc---cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhhcCCC
Q psy2398 313 ATGYNRHFPFIDKEKLEW---KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSK 384 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~ 384 (433)
|+|++|+..++....+.. ..+++...+..+. +.|+||++||++.. ..+..|..||+.+|.++.+...+..
T Consensus 308 a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~-~~~~~A~~~g~~aa~~i~~~lg~~~ 380 (493)
T 1y56_A 308 ADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSI-KPHYANYLEGKLVGAYILKEFGYDA 380 (493)
T ss_dssp CCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCC-CCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCc-cCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999988876554432 2344442333334 78999999999874 4567899999999999998765543
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-25 Score=217.27 Aligned_cols=284 Identities=16% Similarity=0.197 Sum_probs=162.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+|||||++|+++|..|++.+ ++|+|||+++... |..+.......... .
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~------------~~p~l~~v~~g~~~---------------~ 55 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG------------FTPAFPHLAMGWRK---------------F 55 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE------------CGGGHHHHHHTCSC---------------G
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc------------cCccHHHHhcCCCC---------------H
Confidence 58999999999999999999865 7899999986431 11000000000000 0
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 165 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~ 165 (433)
+++...++.+.++.++ ++ ...+|+.|+.+.+ +|++++|+++.||+||+|||+ .+. ++++|. .. |...+
T Consensus 56 ~~i~~~~~~~~~~~gv--~~-i~~~v~~Id~~~~--~V~~~~g~~i~YD~LViAtG~--~~~-~~i~G~-~e---~~~~~ 123 (430)
T 3hyw_A 56 EDISVPLAPLLPKFNI--EF-INEKAESIDPDAN--TVTTQSGKKIEYDYLVIATGP--KLV-FGAEGQ-EE---NSTSI 123 (430)
T ss_dssp GGSEEESTTTGGGGTE--EE-ECSCEEEEETTTT--EEEETTCCEEECSEEEECCCC--EEE-CCSBTH-HH---HSCCC
T ss_pred HHhhhcHHHHHHHCCc--EE-EEeEEEEEECCCC--EEEECCCCEEECCEEEEeCCC--Ccc-CCccCc-cc---CcCCc
Confidence 0000011122333444 23 3558889887544 688889989999999999998 443 457770 00 11111
Q ss_pred CCCC----------C-CCCCeEEEEcCCC------CHHHHHHHHh----ccC----CcEEEEEecCceeecccCCCCChh
Q psy2398 166 KSPD----------Q-IRNKRVLVVGAGN------SGCDIAVDAS----HHS----EKVYHSTRRGYHYYPKFIDGKPTP 220 (433)
Q Consensus 166 ~~~~----------~-~~~~~v~VvG~G~------sg~d~a~~l~----~~~----~~V~~~~r~~~~~~p~~~~~~~~~ 220 (433)
++.+ + ..++.++|+|+|. .+.|++..+. +.+ .+|+++...+. ++.+....
T Consensus 124 ~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~--l~~~~~~~--- 198 (430)
T 3hyw_A 124 CTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPY--LGHFGVGG--- 198 (430)
T ss_dssp SSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSS--TTCTTTTC---
T ss_pred ccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccch--hhhccchh---
Confidence 1111 1 1244566666653 1234444333 222 35676665442 11110000
Q ss_pred HHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEec
Q psy2398 221 QWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFV 300 (433)
Q Consensus 221 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~ 300 (433)
+.... ...+..+ ...++ ++.....|++++.+.+.+.
T Consensus 199 ------~~~~~------~~l~~~l-------~~~GV-------------------------~~~~~~~v~~v~~~~~~~~ 234 (430)
T 3hyw_A 199 ------IGASK------RLVEDLF-------AERNI-------------------------DWIANVAVKAIEPDKVIYE 234 (430)
T ss_dssp ------STTHH------HHHHHHH-------HHTTC-------------------------EEECSCEEEEECSSEEEEE
T ss_pred ------hHHHH------HHHHHHH-------HhCCe-------------------------EEEeCceEEEEeCCceEEE
Confidence 00000 1111111 01111 3344567888888888776
Q ss_pred C--C--ceeeccEEEEccCCCCCCCCCCccc--ccccC-CccccccccccCCCCcEEEEccccccC------------Ch
Q psy2398 301 D--D--THIEVDTIIYATGYNRHFPFIDKEK--LEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAA------------GL 361 (433)
Q Consensus 301 d--G--~~~~~D~vi~atG~~~~~~~l~~~~--~~~~~-~~~~~~~~~~~~~~p~i~~iG~~~~~~------------~~ 361 (433)
+ | .++++|.+|+++|.+++ +++.... +..+. +.+.++..+..+++||||++|||+..+ ..
T Consensus 235 ~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~ 313 (430)
T 3hyw_A 235 DLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKT 313 (430)
T ss_dssp CTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCC
T ss_pred eeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchH
Confidence 4 3 46899999999999997 5544332 22233 345666666669999999999998532 34
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q psy2398 362 GDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 362 ~~~a~~qa~~~a~~i~g~~ 380 (433)
.+.|..||+.+|++|....
T Consensus 314 a~~A~~qg~~~A~Ni~~~l 332 (430)
T 3hyw_A 314 GMMIEQMAMAVAHNIVNDI 332 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5689999999999997554
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.7e-17 Score=153.60 Aligned_cols=136 Identities=15% Similarity=0.232 Sum_probs=91.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc--------CCCCCCccccceEe-ecCCCccc----CC--
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN--------SQASCGRVYPSLHL-ISPKFNTQ----VP-- 71 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~--------~~~~~~~~~~~~~~-~~~~~~~~----~~-- 71 (433)
.+||+|||||++|+++|..|+++|.+|+|+|+.+.+|+.|. ..+. .+.+...+ ..+..... |.
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNL--EVTPAHYLSQNPHFVKSALARYTNW 81 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEES--SCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCC--ccCHHHhccCCHHHHHHHHHhCCHH
Confidence 48999999999999999999999999999999987754332 1110 00100000 00000000 00
Q ss_pred ---------CCCC--CCCCCCCC--CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe----CCeEEEEEccCcEEEeC
Q psy2398 72 ---------DYPM--PDNYPVYP--NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY----EDIWEVELSNGKKKKYD 134 (433)
Q Consensus 72 ---------~~~~--~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~----~~~~~v~~~~g~~~~~d 134 (433)
..+. ..+...|+ ...++.+++.+.+++.++ +++++++|+.+..+ ++.|.|++.++ ++.+|
T Consensus 82 ~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv--~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad 158 (401)
T 2gqf_A 82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCK 158 (401)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTC--EEECSCCEEEEEECCSCSSCCEEEEETTE-EEEES
T ss_pred HHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECC
Confidence 0000 00111122 567888899998988888 69999999999876 56788988776 79999
Q ss_pred EEEEccCCCCCCC
Q psy2398 135 FIAVCNGAQRVAR 147 (433)
Q Consensus 135 ~vIvAtG~~s~p~ 147 (433)
.||+|||.++.|.
T Consensus 159 ~VVlAtG~~s~p~ 171 (401)
T 2gqf_A 159 NLIVATGGLSMPG 171 (401)
T ss_dssp EEEECCCCSSCGG
T ss_pred EEEECCCCccCCC
Confidence 9999999987554
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-15 Score=130.28 Aligned_cols=124 Identities=14% Similarity=0.062 Sum_probs=84.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.+||+|||||++|+.+|..|++.|.+|+++|+.....|.+... ..... ........+.+ ..-+.+.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~-----~~~~~--~~~~~~~~~~d-------~~g~~~~ 68 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLP-----PKPPF--PPGSLLERAYD-------PKDERVW 68 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC-----CCSCC--CTTCHHHHHCC-------TTCCCHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCc-----ccccc--chhhHHhhhcc-------CCCCCHH
Confidence 4899999999999999999999999999999984433332211 00000 00000001110 0112567
Q ss_pred HHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 87 MMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 87 ~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.+.+++.+.+++. ++ .++ +++|+++..+++. +.|.+.+|.++.+|.||+|||.++...
T Consensus 69 ~~~~~l~~~~~~~~gv--~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~ 128 (232)
T 2cul_A 69 AFHARAKYLLEGLRPL--HLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGAR 128 (232)
T ss_dssp HHHHHHHHHHHTCTTE--EEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCE
T ss_pred HHHHHHHHHHHcCCCc--EEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhc
Confidence 8889999888886 76 355 6789999887655 467888887899999999999965443
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.3e-15 Score=124.43 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=101.1
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccC--CCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI--DGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV 252 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (433)
+|+|||+|.+|+++|..|++.+.+|+++.+++... ++.. ...+ .+|..... . .+.+.+.+.+.
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~-~~~~~~~~~~------~~~~~~~~-~---~~~~~l~~~~~---- 67 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV-KGVSRVPNYP------GLLDEPSG-E---ELLRRLEAHAR---- 67 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTT-TTCSCCCCST------TCTTCCCH-H---HHHHHHHHHHH----
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcc-cCchhhhccC------CCcCCCCH-H---HHHHHHHHHHH----
Confidence 69999999999999999999999999999886321 1100 0000 00000000 0 11111111111
Q ss_pred cCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEEecCCceeeccEEEEccCCCCCCCCCCcccc
Q psy2398 253 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKL 328 (433)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~ 328 (433)
..++ ++... .+++++. ..+.+++| ++++|.||+|||.+|++ ++...+
T Consensus 68 ~~gv-------------------------~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~--~~~~g~ 118 (180)
T 2ywl_A 68 RYGA-------------------------EVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTL--PSLLGL 118 (180)
T ss_dssp HTTC-------------------------EEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHH--HHHHTC
T ss_pred HcCC-------------------------EEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCc--cccCCC
Confidence 0111 23334 5555532 24667788 89999999999999853 222233
Q ss_pred cccCCccccccccccCCCCcEEEEccccccCC-hhhHHHHHHHHHHHHHhhhh
Q psy2398 329 EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~-~~~~a~~qa~~~a~~i~g~~ 380 (433)
..+.+.+.+++ .+.++.|+||++||++.... .+..|..||+.+|.++.+..
T Consensus 119 ~~~~g~i~vd~-~~~t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 170 (180)
T 2ywl_A 119 TRRGAYIDTDE-GGRTSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDL 170 (180)
T ss_dssp CEETTEECCCT-TCBCSSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCceEEeCC-CCCcCCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHh
Confidence 33434444544 45778999999999998654 77889999999999998764
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-14 Score=134.28 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=93.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCC------cc-ccceEeecCCCcc----cCC--
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCG------RV-YPSLHLISPKFNT----QVP-- 71 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~------~~-~~~~~~~~~~~~~----~~~-- 71 (433)
+..+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+.+....... .. ........+.... .|.
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ 104 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence 4568999999999999999999999999999999998765442110000 00 0000000010000 000
Q ss_pred ---------CCCC--CCCCCC--CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEE
Q psy2398 72 ---------DYPM--PDNYPV--YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAV 138 (433)
Q Consensus 72 ---------~~~~--~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIv 138 (433)
..+. ...... .....++.+.+.+.+++.++ .++++++|+.+..+++.|.|++.++ ++.+|.||+
T Consensus 105 ~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv--~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIl 181 (417)
T 3v76_A 105 DFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGV--QLRLETSIGEVERTASGFRVTTSAG-TVDAASLVV 181 (417)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTC--EEECSCCEEEEEEETTEEEEEETTE-EEEESEEEE
T ss_pred HHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCC--EEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEE
Confidence 0000 000001 12457888899998988888 6999999999998888899999887 799999999
Q ss_pred ccCCCCCCCC
Q psy2398 139 CNGAQRVARY 148 (433)
Q Consensus 139 AtG~~s~p~~ 148 (433)
|||.++.|..
T Consensus 182 AtG~~S~p~~ 191 (417)
T 3v76_A 182 ASGGKSIPKM 191 (417)
T ss_dssp CCCCSSCGGG
T ss_pred CCCCccCCCC
Confidence 9999886554
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-14 Score=135.49 Aligned_cols=195 Identities=12% Similarity=0.090 Sum_probs=103.8
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC--------CCCCccccceE--------e-----------
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ--------ASCGRVYPSLH--------L----------- 61 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~--------~~~~~~~~~~~--------~----------- 61 (433)
||+|||||++|+++|..|++.|.+|+|+||. ..||.-... .+.......+. +
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~ 79 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 7999999999999999999999999999998 555532111 00000000000 0
Q ss_pred ecCC---Cc----ccCCC-CC-CC-CCCC-----CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEE
Q psy2398 62 ISPK---FN----TQVPD-YP-MP-DNYP-----VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVEL 125 (433)
Q Consensus 62 ~~~~---~~----~~~~~-~~-~~-~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~ 125 (433)
..+. .+ ..|.. .. .+ ...+ .-.....+.+.+.+.+++.++ .++.+++| .+..+++.. -+..
T Consensus 80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv--~i~~~~~v-~l~~~~~~v~Gv~v 156 (472)
T 2e5v_A 80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGI--PIIEDRLV-EIRVKDGKVTGFVT 156 (472)
T ss_dssp HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTC--CEECCCEE-EEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCC--EEEECcEE-EEEEeCCEEEEEEE
Confidence 0000 00 00100 00 00 0000 011245677777777777787 58899999 998776543 2333
Q ss_pred c-cCcEEEeCEEEEccCCCCCCCCCCCCC---CCCCceeccC-----CCCCCCCCCC-CeEEEEcCCCCHHHHHHHHhcc
Q psy2398 126 S-NGKKKKYDFIAVCNGAQRVARYPNYSG---YFSGEILHSM-----DYKSPDQIRN-KRVLVVGAGNSGCDIAVDASHH 195 (433)
Q Consensus 126 ~-~g~~~~~d~vIvAtG~~s~p~~p~i~g---~~~g~~~~~~-----~~~~~~~~~~-~~v~VvG~G~sg~d~a~~l~~~ 195 (433)
. ++..+.+|.||+|||.++ ..+++.. ..+|.-+... ...+.+.+.. ..++++|+| +++++..+...
T Consensus 157 ~~~~g~~~a~~VVlAtGg~~--~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~ 232 (472)
T 2e5v_A 157 EKRGLVEDVDKLVLATGGYS--YLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGE 232 (472)
T ss_dssp TTTEEECCCSEEEECCCCCG--GGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHT
T ss_pred EeCCCeEEeeeEEECCCCCc--ccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCC
Confidence 2 222477999999999954 3333321 2233211100 1112221111 234556766 88888777777
Q ss_pred CCcEEEEEecCceeeccc
Q psy2398 196 SEKVYHSTRRGYHYYPKF 213 (433)
Q Consensus 196 ~~~V~~~~r~~~~~~p~~ 213 (433)
|..+ +..+ +..+++++
T Consensus 233 G~~~-v~~~-g~rf~~~~ 248 (472)
T 2e5v_A 233 GAQI-INEN-GERFLFNY 248 (472)
T ss_dssp TCEE-EETT-CCCGGGGT
T ss_pred ceEE-ECCC-CCCCCccC
Confidence 7766 4433 33345543
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-12 Score=108.94 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=84.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
++||+|||||++|+.+|..|++.|.+|+++|+.+.. +... ..+..++.+ +......
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~---~~~~---------------~~~~~~~~~------~~~~~~~ 56 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSK---VKGV---------------SRVPNYPGL------LDEPSGE 56 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCT---TTTC---------------SCCCCSTTC------TTCCCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCc---ccCc---------------hhhhccCCC------cCCCCHH
Confidence 369999999999999999999999999999997632 1110 001111111 1124578
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
++.+++.+.+++.++ +++++ +|+.++.+++.+.+++.++ ++.+|.||+|+|..
T Consensus 57 ~~~~~l~~~~~~~gv--~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 57 ELLRRLEAHARRYGA--EVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKD 109 (180)
T ss_dssp HHHHHHHHHHHHTTC--EEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHHcCC--EEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCC
Confidence 899999999999998 58888 9999998777789998888 79999999999984
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.3e-13 Score=127.25 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=90.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc---ccCCCC----------------CCccccceEeecCC-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV---WNSQAS----------------CGRVYPSLHLISPK- 65 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~---~~~~~~----------------~~~~~~~~~~~~~~- 65 (433)
+.+||+|||||++|+++|..|++.|++|+|||+.+..+.. +..... .........+....
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS 101 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence 4589999999999999999999999999999998764210 000000 00011111111111
Q ss_pred --CcccCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEcc
Q psy2398 66 --FNTQVPDYPMP---DNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 66 --~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAt 140 (433)
....++..... ........+..+.+.+.+.+.. . .++++++|+.++.+++.++|++.+|+++.+|.||.|+
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~Ad 177 (407)
T 3rp8_A 102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--D--SVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAAD 177 (407)
T ss_dssp CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--G--GEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECC
T ss_pred CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--C--EEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECC
Confidence 11111100000 0111234578888888888766 3 6899999999999989999999999899999999999
Q ss_pred CCCCCC
Q psy2398 141 GAQRVA 146 (433)
Q Consensus 141 G~~s~p 146 (433)
|.+|.-
T Consensus 178 G~~S~v 183 (407)
T 3rp8_A 178 GSHSAL 183 (407)
T ss_dssp CTTCSS
T ss_pred CcChHH
Confidence 997643
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=121.95 Aligned_cols=131 Identities=18% Similarity=0.266 Sum_probs=87.5
Q ss_pred CcEEEECCChHHHHHHHHHHh---cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC------------------
Q psy2398 8 IKLCIIGGGPLGIGLGRELSE---GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF------------------ 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~---~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~------------------ 66 (433)
+||+|||||++|+++|..|++ .|++|+||||.+.+||.+...... .+..........
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~--~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 79 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSP--HNPQCTADLGAQYITCTPHYAKKHQRFYDE 79 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECS--SCTTCEEESSCCCEEECSSHHHHTHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecC--CCCCceEecCCceEEcCchHHHHHHHHHHH
Confidence 699999999999999999999 899999999999999877643110 000011110000
Q ss_pred ------cccCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEE
Q psy2398 67 ------NTQVPD----YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFI 136 (433)
Q Consensus 67 ------~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~v 136 (433)
...+.. .........+.....+..+++.+++..+. .++++++|++|+.++++|+|++.+|..+.||.|
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~--~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~v 157 (342)
T 3qj4_A 80 LLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGA--EVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLI 157 (342)
T ss_dssp HHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTC--EEESSCCEEEEEECSSSEEEEESSSCCEEESEE
T ss_pred HHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCC--EEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEE
Confidence 000000 00000111122233345566666666666 699999999999988889999988877899999
Q ss_pred EEccCC
Q psy2398 137 AVCNGA 142 (433)
Q Consensus 137 IvAtG~ 142 (433)
|+|+..
T Consensus 158 V~A~p~ 163 (342)
T 3qj4_A 158 VLTMPV 163 (342)
T ss_dssp EECSCH
T ss_pred EECCCH
Confidence 999985
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-12 Score=127.40 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=89.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC--C-------CCccccceE-----ee---cCCC---
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA--S-------CGRVYPSLH-----LI---SPKF--- 66 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~--~-------~~~~~~~~~-----~~---~~~~--- 66 (433)
.+||+|||||++|+++|..|++.|++|+|||+.+..+....... + .-.++..+. .. ....
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 128 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQ 128 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcccc
Confidence 47999999999999999999999999999999876431100000 0 000000000 00 0000
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE--ccC-cEEEeCEEEEccCCC
Q psy2398 67 NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--SNG-KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~--~~g-~~~~~d~vIvAtG~~ 143 (433)
...+.....+........+..+.+.+.+.+++.++ .++++++|+.++.+++.++|++ .+| .++++|+||.|+|.+
T Consensus 129 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~ 206 (570)
T 3fmw_A 129 GLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGA--EIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGR 206 (570)
T ss_dssp CCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTE--ECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSS
T ss_pred cccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCC
Confidence 11111111111112346788999999999888777 5889999999998888888887 567 679999999999998
Q ss_pred CC
Q psy2398 144 RV 145 (433)
Q Consensus 144 s~ 145 (433)
|.
T Consensus 207 S~ 208 (570)
T 3fmw_A 207 ST 208 (570)
T ss_dssp CH
T ss_pred ch
Confidence 73
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4e-12 Score=121.67 Aligned_cols=137 Identities=20% Similarity=0.348 Sum_probs=87.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC-----CCcccCCCCCC-------ccccce---------EeecC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL-----GGVWNSQASCG-------RVYPSL---------HLISP 64 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~-----Gg~~~~~~~~~-------~~~~~~---------~~~~~ 64 (433)
..+||+|||||++|+++|..|++.|++|+|||+.+.. |+.|......+ .+++.+ .+...
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 104 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE 104 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence 4579999999999999999999999999999998653 33333221100 000000 11111
Q ss_pred CCcccCCCC-CCC-CCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 65 KFNTQVPDY-PMP-DNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 65 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
.....+... +.. ........+..+.+++.+.+.. . .++++++|+.++.+++.|+|++.+|.++.+|.||.|+|.
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 180 (398)
T 2xdo_A 105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEN--D--TVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGG 180 (398)
T ss_dssp SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCT--T--SEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCT
T ss_pred CCCchhhccccccCCCCCceECHHHHHHHHHhhcCC--C--EEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCc
Confidence 000000000 000 0011134577777777665432 2 589999999999887789999999888999999999999
Q ss_pred CCCC
Q psy2398 143 QRVA 146 (433)
Q Consensus 143 ~s~p 146 (433)
+|..
T Consensus 181 ~S~v 184 (398)
T 2xdo_A 181 MSKV 184 (398)
T ss_dssp TCSC
T ss_pred chhH
Confidence 7743
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.2e-12 Score=120.42 Aligned_cols=137 Identities=16% Similarity=0.169 Sum_probs=89.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC----CCCcccCCCC--------------CC-ccccceEeecCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD----LGGVWNSQAS--------------CG-RVYPSLHLISPKF 66 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~----~Gg~~~~~~~--------------~~-~~~~~~~~~~~~~ 66 (433)
..+||+|||||++|+++|..|++.|++|+|+|+.+. .|........ .. .............
T Consensus 4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 83 (421)
T 3nix_A 4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKE 83 (421)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCe
Confidence 348999999999999999999999999999999863 2322211100 00 0000111111111
Q ss_pred cc--cCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE--EEEccCc--EEEeCEEEEc
Q psy2398 67 NT--QVPDYPMP-DNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE--VELSNGK--KKKYDFIAVC 139 (433)
Q Consensus 67 ~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~--v~~~~g~--~~~~d~vIvA 139 (433)
.. .+...... ........+..+.+.+.+.+.+.|+ .++++++|+.++.+++.+. +.+.+|+ ++.+|.||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv--~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A 161 (421)
T 3nix_A 84 IADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGV--DVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDA 161 (421)
T ss_dssp EEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTC--EEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEEC
T ss_pred eEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEEC
Confidence 11 11111000 1111245688999999999988888 6999999999998876654 4456776 6999999999
Q ss_pred cCCCC
Q psy2398 140 NGAQR 144 (433)
Q Consensus 140 tG~~s 144 (433)
+|.++
T Consensus 162 ~G~~s 166 (421)
T 3nix_A 162 SGYGR 166 (421)
T ss_dssp CGGGC
T ss_pred CCCch
Confidence 99865
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.5e-12 Score=123.04 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=92.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC--CC-------CCccccceEeecCCCc-------
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ--AS-------CGRVYPSLHLISPKFN------- 67 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~--~~-------~~~~~~~~~~~~~~~~------- 67 (433)
+++.+||+||||||+|+++|..|++.|++|+|||+.+..+..-.-. .+ .-.++..+....+...
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 87 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLP 87 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEE
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhcccccccccccee
Confidence 3456899999999999999999999999999999987653210000 00 0001110000000000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc---EEEeCEEEEccCCCC
Q psy2398 68 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---KKKYDFIAVCNGAQR 144 (433)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~---~~~~d~vIvAtG~~s 144 (433)
..+.....+.......++..+.+.+.+.+.+.++ .++++++|+.++.+++.+++++.++. ++++|+||.|+|.+|
T Consensus 88 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 88 IDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGA--DIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTC--EEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred cccccCCCCCCceeecCHHHHHHHHHHHHHHCCC--EEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 0010000000011234578899999999988887 69999999999998888999887764 789999999999987
Q ss_pred C
Q psy2398 145 V 145 (433)
Q Consensus 145 ~ 145 (433)
.
T Consensus 166 ~ 166 (500)
T 2qa1_A 166 S 166 (500)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.3e-12 Score=122.69 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=91.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC--CC-------CCccccceE----ee---cCCCcc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ--AS-------CGRVYPSLH----LI---SPKFNT 68 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~--~~-------~~~~~~~~~----~~---~~~~~~ 68 (433)
+..+||+||||||+|+++|..|++.|++|+|||+.+..+..-.-. .+ .-.++..+. .. ......
T Consensus 10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 89 (499)
T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPV 89 (499)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEE
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceec
Confidence 456899999999999999999999999999999987653210000 00 000000000 00 000000
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc---EEEeCEEEEccCCCCC
Q psy2398 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~---~~~~d~vIvAtG~~s~ 145 (433)
.+.....+.......++..+.+.+.+.+.+.++ .++++++|+.++.+++.+++++.++. ++++|+||.|+|.+|.
T Consensus 90 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 90 DFGVLEGAHYGVKAVPQSTTESVLEEWALGRGA--ELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp EGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTC--EEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred ccccCCCCCCceEecCHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence 111110000011234578899999999988887 69999999999988788899888764 7899999999999874
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-11 Score=120.42 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=92.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC--C-----------------CCccccc---e---
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA--S-----------------CGRVYPS---L--- 59 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~--~-----------------~~~~~~~---~--- 59 (433)
...+||+|||||++|+++|..|+++|++|+|||+.+..+..-.... + ....+.. .
T Consensus 3 ~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (535)
T 3ihg_A 3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIR 82 (535)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEE
T ss_pred CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeee
Confidence 3568999999999999999999999999999999875431100000 0 0000000 0
Q ss_pred Eeec--CCCcc----cCCC----CCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC----eEEEE
Q psy2398 60 HLIS--PKFNT----QVPD----YPM-PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED----IWEVE 124 (433)
Q Consensus 60 ~~~~--~~~~~----~~~~----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~----~~~v~ 124 (433)
.... ...+. .+.. ... ........++..+.+++.+.+++.++ .++++++|+.++.+++ .++++
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~~~~~~~~v~v~ 160 (535)
T 3ihg_A 83 LAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGG--AIRFGTRLLSFRQHDDDAGAGVTAR 160 (535)
T ss_dssp EESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEECGGGCSEEEEE
T ss_pred EEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEECCCCccccEEEE
Confidence 0000 00000 0000 000 00112345788999999999998887 6999999999999877 89998
Q ss_pred EccC---cEEEeCEEEEccCCCC
Q psy2398 125 LSNG---KKKKYDFIAVCNGAQR 144 (433)
Q Consensus 125 ~~~g---~~~~~d~vIvAtG~~s 144 (433)
+.++ .++.+|+||.|+|.+|
T Consensus 161 ~~~~~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 161 LAGPDGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp EEETTEEEEEEEEEEEECCCTTC
T ss_pred EEcCCCeEEEEeCEEEECCCCcc
Confidence 8876 6799999999999987
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-12 Score=120.97 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=85.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC----CCcccCCCC-------C-------CccccceEeecC--C
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL----GGVWNSQAS-------C-------GRVYPSLHLISP--K 65 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~----Gg~~~~~~~-------~-------~~~~~~~~~~~~--~ 65 (433)
..+||+|||||++|+++|..|++.|++|+|||+.+.. |+.+..... . ............ .
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g 83 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 83 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCC
Confidence 4589999999999999999999999999999998653 111111000 0 000000001000 0
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 66 FNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
.... ..+.+ .....+..+.+++.+.+ .++ .++++++|+.++.+++.++|++.+|.++.+|.||.|+|.+|.
T Consensus 84 ~~~~--~~~~~---~~~~~~~~l~~~L~~~~--~~~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 84 ERVG--SVPAD---WRFTSYDSIYGGLYELF--GPE--RYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp CEEE--EEECC---CCEEEHHHHHHHHHHHH--CST--TEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred Cccc--cccCc---ccccCHHHHHHHHHHhC--CCc--EEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence 0000 00000 01234567777776654 244 689999999999888889999999888999999999999774
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-12 Score=125.00 Aligned_cols=174 Identities=14% Similarity=0.075 Sum_probs=103.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-CCCCcccCCCCCCcc-----ccceEeecCCCc--------ccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-DLGGVWNSQASCGRV-----YPSLHLISPKFN--------TQVP 71 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~~Gg~~~~~~~~~~~-----~~~~~~~~~~~~--------~~~~ 71 (433)
..+||+|||||++|++||..|++.|.+|+|+|+.. .+|...... ..+.. ...+. .....+ ..|.
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnp-s~ggia~~~lv~ei~-algg~~~~~~d~~gi~f~ 104 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNP-AIGGIGKGHLVKEVD-ALGGLMAKAIDQAGIQFR 104 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSS-EEESTTHHHHHHHHH-HTTCSHHHHHHHHEEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccc-cccchhhHHHHHHHH-HhccHHHHHhhhcccchh
Confidence 45899999999999999999999999999999974 344211100 00000 00000 000000 0000
Q ss_pred CC---CCCCCC--CCCCCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCEEEEccCCCC
Q psy2398 72 DY---PMPDNY--PVYPNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 72 ~~---~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.. ..+... .....+..+.+.+.+.+++ .++ .+ ++++|+.+..+++. +.|.+.+|..+.||.||+|||.++
T Consensus 105 ~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV--~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s 181 (651)
T 3ces_A 105 ILNASKGPAVRATRAQADRVLYRQAVRTALENQPNL--MI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFL 181 (651)
T ss_dssp EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTE--EE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred hhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCC--EE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCc
Confidence 00 000000 0113456788888888887 466 35 67799999876544 568888888899999999999954
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEe
Q psy2398 145 VARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 204 (433)
Q Consensus 145 ~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r 204 (433)
..+.++|... +...+ +| |.+|.+++..|.+.|.+|+.+..
T Consensus 182 --~~~~i~G~~~--------------~~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t 221 (651)
T 3ces_A 182 --DGKIHIGLDN--------------YSGGR---AG-DPPSIPLSRRLRELPLRVGRLKT 221 (651)
T ss_dssp --CCEEECC-------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred --cCccccCccc--------------CCCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence 4444555100 01223 56 88899999999999999998864
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=120.34 Aligned_cols=131 Identities=17% Similarity=0.157 Sum_probs=87.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC---C----------------CCCccccceEeecCC-C
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ---A----------------SCGRVYPSLHLISPK-F 66 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~---~----------------~~~~~~~~~~~~~~~-~ 66 (433)
.+||+|||||++|+++|..|++.|++|+|||+.+..++.-... . ............... .
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 4799999999999999999999999999999987664310000 0 000001111111110 0
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 67 NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
+..++ .+........+..+.+++.+.+.+.++ .++++++|+.++. ++ .|++.+|.++.+|.||+|+|.+|.
T Consensus 91 ~~~~~---~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 91 VSKET---FNGLPWRIMTRSHLHDALVNRARALGV--DISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp EEEEC---GGGCCEEEEEHHHHHHHHHHHHHHTTC--EEESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTTCH
T ss_pred eeecc---CCCCceEEECHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCccHH
Confidence 00010 000001234678899999999988887 6999999999987 44 888888888999999999999663
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=120.78 Aligned_cols=143 Identities=18% Similarity=0.129 Sum_probs=89.0
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC----CCCcccCCC-C--------------CCcccc-ceE
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD----LGGVWNSQA-S--------------CGRVYP-SLH 60 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~----~Gg~~~~~~-~--------------~~~~~~-~~~ 60 (433)
|+|....+||+|||||++|+++|..|++.|++|+|||+.+. .|..+.... . ...... ...
T Consensus 1 M~~~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 80 (512)
T 3e1t_A 1 MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGT 80 (512)
T ss_dssp ----CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEE
T ss_pred CCCCCccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCce
Confidence 55555568999999999999999999999999999999863 222211100 0 000000 000
Q ss_pred eecCCC----cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe---EEEEEccCc--E
Q psy2398 61 LISPKF----NTQVPDYPMP-DNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEVELSNGK--K 130 (433)
Q Consensus 61 ~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~---~~v~~~~g~--~ 130 (433)
...... ...+...+.. ........+..+.+++.+.+.+.++ +++++++|+.+..+++. +.+...+|+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~ 158 (512)
T 3e1t_A 81 FRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGV--DVRERHEVIDVLFEGERAVGVRYRNTEGVELM 158 (512)
T ss_dssp EECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEETTEEEEEEEECSSSCEEE
T ss_pred EEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEECCEEEEEEEEeCCCCEEE
Confidence 000000 0011111100 1111235688999999999988887 68999999999988664 444455564 7
Q ss_pred EEeCEEEEccCCCCC
Q psy2398 131 KKYDFIAVCNGAQRV 145 (433)
Q Consensus 131 ~~~d~vIvAtG~~s~ 145 (433)
+.+|.||+|+|.+|.
T Consensus 159 i~ad~VI~AdG~~S~ 173 (512)
T 3e1t_A 159 AHARFIVDASGNRTR 173 (512)
T ss_dssp EEEEEEEECCCTTCS
T ss_pred EEcCEEEECCCcchH
Confidence 899999999999763
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-12 Score=121.78 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=91.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC---CcccCCCC----------------CCccccceEeecCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG---GVWNSQAS----------------CGRVYPSLHLISPK 65 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G---g~~~~~~~----------------~~~~~~~~~~~~~~ 65 (433)
..++||+|||||++|+++|..|++.|++|+|+|+.+... ........ ..............
T Consensus 4 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T 2x3n_A 4 DNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD 83 (399)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred CCcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence 345899999999999999999999999999999986541 10000000 00001111111100
Q ss_pred --CcccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeE--EEEEccCcEEEeCEEEEc
Q psy2398 66 --FNTQVPDYPMP-DNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW--EVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 66 --~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~--~v~~~~g~~~~~d~vIvA 139 (433)
....++..... ........+..+.+.+.+.+.+. ++ +++++++|+.++.+++.+ .|++.+|+++.+|.||+|
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~A 161 (399)
T 2x3n_A 84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATV--EMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGA 161 (399)
T ss_dssp TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTE--EEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEEC
T ss_pred CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCc--EEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEEC
Confidence 01111110000 00112356888999999888877 66 589999999999887778 899988888999999999
Q ss_pred cCCCCC
Q psy2398 140 NGAQRV 145 (433)
Q Consensus 140 tG~~s~ 145 (433)
+|.+|.
T Consensus 162 dG~~s~ 167 (399)
T 2x3n_A 162 DGIASY 167 (399)
T ss_dssp CCTTCH
T ss_pred CCCChH
Confidence 999764
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=120.56 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=90.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC------CCccccceEee---cCCC----cccCC--
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS------CGRVYPSLHLI---SPKF----NTQVP-- 71 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~------~~~~~~~~~~~---~~~~----~~~~~-- 71 (433)
.+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+....... ....+..+... .+.. +..+.
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE 105 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence 479999999999999999999999999999998877643211000 00000000000 0000 00000
Q ss_pred ---------CCCC-----CCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCEE
Q psy2398 72 ---------DYPM-----PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFI 136 (433)
Q Consensus 72 ---------~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~v 136 (433)
..+. ...++.......+.+.+.+.+++.++ +++++++|+.+..+++. |.|++.+|.++.+|.|
T Consensus 106 ~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV--~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~V 183 (447)
T 2i0z_A 106 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV--KIRTNTPVETIEYENGQTKAVILQTGEVLETNHV 183 (447)
T ss_dssp HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEETTEEEEEEETTCCEEECSCE
T ss_pred HHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEecCCcEEEEEECCCCEEECCEE
Confidence 0000 00001111357788888888888888 68999999999987666 8899988877999999
Q ss_pred EEccCCCCCCC
Q psy2398 137 AVCNGAQRVAR 147 (433)
Q Consensus 137 IvAtG~~s~p~ 147 (433)
|+|||.++.|.
T Consensus 184 VlAtGg~s~~~ 194 (447)
T 2i0z_A 184 VIAVGGKSVPQ 194 (447)
T ss_dssp EECCCCSSSGG
T ss_pred EECCCCCcCCC
Confidence 99999987543
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-11 Score=117.48 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCc---EEEEEEEeCCeEE-EEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNT---EVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~---~V~~v~~~~~~~~-v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
...+.+.+.+.+++.|+ ++++++ +|+++..+++.+. |++.+|.++.||.||+|+|.++....+
T Consensus 160 ~~~~~~~L~~~a~~~Gv--~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~~ 226 (438)
T 3dje_A 160 ARNALVAAAREAQRMGV--KFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFLD 226 (438)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGTSC
T ss_pred HHHHHHHHHHHHHhcCC--EEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhhcC
Confidence 46788888888888888 699999 9999998888888 999988789999999999998654333
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-11 Score=115.36 Aligned_cols=137 Identities=10% Similarity=0.112 Sum_probs=87.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC------------C--C---CccccceEeecCCCccc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA------------S--C---GRVYPSLHLISPKFNTQ 69 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~------------~--~---~~~~~~~~~~~~~~~~~ 69 (433)
.|||+||||||+|+++|..|+++|++|+||||++.+|....... + . ...........+.....
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP 83 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence 48999999999999999999999999999999877653211000 0 0 00011222222211110
Q ss_pred --CCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE--ccC--cEEEeCEEEEccCCC
Q psy2398 70 --VPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--SNG--KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~--~~g--~~~~~d~vIvAtG~~ 143 (433)
+..............+..+.+.+.+.+...|+ .++++++|+.+..+++...... .++ .++++|.||.|+|.+
T Consensus 84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~--~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~ 161 (397)
T 3oz2_A 84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGA--DVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFE 161 (397)
T ss_dssp EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTC--EEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred eeccccccCCceeEEEEHHHHHHHHHHHHHhcCc--EEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccc
Confidence 00000001111234688999999999988887 5899999999988766544322 223 358899999999997
Q ss_pred CC
Q psy2398 144 RV 145 (433)
Q Consensus 144 s~ 145 (433)
|.
T Consensus 162 S~ 163 (397)
T 3oz2_A 162 SE 163 (397)
T ss_dssp CH
T ss_pred cH
Confidence 64
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-12 Score=123.15 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=88.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccce-EeecCCCccc-CCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSL-HLISPKFNTQ-VPDYPMPDNYPVYP 83 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (433)
..+||+|||||++|+++|..|++.|++|+|||+.+.+|+..... .++.. .......+.. ...+. .......
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~-----~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~ 163 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH-----LWPFTIHDLRALGAKKFYGRFC--TGTLDHI 163 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEE-----CCHHHHHHHHTTTHHHHCTTTT--CTTCCEE
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCccc-----CChhHHHHHHHcCCcccccccc--ccccccC
Confidence 45899999999999999999999999999999998776432111 01100 0000000000 00000 0001123
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe---CCeEEEEE--c-cC--cEEEeCEEEEccCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVEL--S-NG--KKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~--~-~g--~~~~~d~vIvAtG~~s~p 146 (433)
.+.++.+++.+.+++.++ .++++++|+.++.+ ++.|.|++ . +| .++.+|+||+|+|.+|.+
T Consensus 164 ~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 164 SIRQLQLLLLKVALLLGV--EIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp EHHHHHHHHHHHHHHTTC--EEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred CHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence 468889999998888887 69999999999874 35688887 3 44 358999999999996644
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.6e-11 Score=116.05 Aligned_cols=136 Identities=21% Similarity=0.276 Sum_probs=86.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC-------CcccCCCC-----------CCccccceEeecCCCc-
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG-------GVWNSQAS-----------CGRVYPSLHLISPKFN- 67 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G-------g~~~~~~~-----------~~~~~~~~~~~~~~~~- 67 (433)
.+||+|||||++|+++|..|++.|++|+|+|+.+.++ +.|..... ....++.-.+......
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 3799999999999999999999999999999987652 22322110 0000000000000000
Q ss_pred -c-------cCCCCCCCCC--CCC--C---CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEccCcEE
Q psy2398 68 -T-------QVPDYPMPDN--YPV--Y---PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKK 131 (433)
Q Consensus 68 -~-------~~~~~~~~~~--~~~--~---~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~g~~~ 131 (433)
. .+..+..+.. ... . .....+.+.+.+.+++.++ .++++++|+.+..+++ .+.|++.+++++
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv--~I~~~t~V~~I~~~~~~v~gV~l~~G~~i 264 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGG--EIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTC--EEESSCCEEEEEESSSBEEEEEETTSCEE
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEEeCCEEEEEEECCCCEE
Confidence 0 0000000000 000 1 1136677788888888887 6999999999998755 456888888889
Q ss_pred EeCEEEEccCCCC
Q psy2398 132 KYDFIAVCNGAQR 144 (433)
Q Consensus 132 ~~d~vIvAtG~~s 144 (433)
.+|.||+|+|.++
T Consensus 265 ~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 265 KSRHVVLAVGHSA 277 (549)
T ss_dssp ECSCEEECCCTTC
T ss_pred ECCEEEECCCCCh
Confidence 9999999999966
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-10 Score=115.43 Aligned_cols=137 Identities=16% Similarity=0.239 Sum_probs=89.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhc------CCCeEEEccCCCCCCcccCCCC---C------------Ccccc------ce
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG------NINYDLYEMESDLGGVWNSQAS---C------------GRVYP------SL 59 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~------g~~v~v~e~~~~~Gg~~~~~~~---~------------~~~~~------~~ 59 (433)
.+||+|||||++|+++|..|++. |++|+||||.+.+|+....... . +.... .+
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~ 114 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 114 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence 37999999999999999999999 9999999999877654211110 0 00000 01
Q ss_pred EeecCCCcccCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeE-EEEEcc------C
Q psy2398 60 HLISPKFNTQVPDYP---MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIW-EVELSN------G 128 (433)
Q Consensus 60 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~-~v~~~~------g 128 (433)
.+........++..+ +.........+..+.++|.+.+++.++ .++++++|+.+..++ +.. .|++.+ |
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G 192 (584)
T 2gmh_A 115 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGV--EVYPGYAAAEILFHEDGSVKGIATNDVGIQKDG 192 (584)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEEECTTSSEEEEEECCEEECTTS
T ss_pred eeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcCCCCEEEEEeCCccccCCC
Confidence 111111111122111 111111235678999999999998887 599999999998864 333 366652 3
Q ss_pred ---------cEEEeCEEEEccCCCCC
Q psy2398 129 ---------KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 129 ---------~~~~~d~vIvAtG~~s~ 145 (433)
.++.+|+||+|+|.+|.
T Consensus 193 ~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 193 APKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp CEEEEEECCCEEECSEEEECCCTTCH
T ss_pred CcccccCCceEEECCEEEEeeCCCch
Confidence 57999999999999764
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.7e-11 Score=116.91 Aligned_cols=134 Identities=14% Similarity=0.182 Sum_probs=87.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC--C-----------------CCcccc---c-eEeec
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA--S-----------------CGRVYP---S-LHLIS 63 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~--~-----------------~~~~~~---~-~~~~~ 63 (433)
.+||+|||||++|+++|..|++.|++|+|||+.+..+....-.. + .+.... . .....
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 105 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR 105 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence 47999999999999999999999999999999876542211000 0 000000 0 11110
Q ss_pred --CCCcccCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---C--
Q psy2398 64 --PKFNTQVPDYPM--------PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---G-- 128 (433)
Q Consensus 64 --~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g-- 128 (433)
...+..+..... ........++..+.+++.+.+.+. ++++++|+.++.+++.+++++.+ |
T Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~~~v~v~~~~~~~G~~ 180 (549)
T 2r0c_A 106 VGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRDDHVRATITDLRTGAT 180 (549)
T ss_dssp BTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECSSCEEEEEEETTTCCE
T ss_pred CCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeCCEEEEEEEECCCCCE
Confidence 011111110000 000112345778888888888764 78999999999887888888765 5
Q ss_pred cEEEeCEEEEccCCCCC
Q psy2398 129 KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 129 ~~~~~d~vIvAtG~~s~ 145 (433)
.++.+|+||.|+|.+|.
T Consensus 181 ~~i~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 181 RAVHARYLVACDGASSP 197 (549)
T ss_dssp EEEEEEEEEECCCTTCH
T ss_pred EEEEeCEEEECCCCCcH
Confidence 46899999999999874
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-11 Score=111.25 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEEccC--cEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNG--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g--~~~~~d~vIvAtG~~s~ 145 (433)
....+.+.+.+.+++.|+ +++++++|+++..++++ |.|++.+| .++.+|.||+|+|.++.
T Consensus 148 ~~~~~~~~l~~~~~~~Gv--~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~ 210 (369)
T 3dme_A 148 DSHALMLAYQGDAESDGA--QLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAP 210 (369)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHH
T ss_pred CHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchH
Confidence 356788888888888888 68999999999987554 89998887 47999999999999763
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-11 Score=117.41 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=87.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC--CCcccCCCC----------CCc-------cccceEeecCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL--GGVWNSQAS----------CGR-------VYPSLHLISPKF 66 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~--Gg~~~~~~~----------~~~-------~~~~~~~~~~~~ 66 (433)
..+||+|||||++|+++|..|++.|++|+|+|+.+.. |..+....- ... .+.......+..
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 84 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDM 84 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCC
Confidence 3589999999999999999999999999999998753 222111000 000 000011111110
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEc---cCc--EEEeCEEEEcc
Q psy2398 67 NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS---NGK--KKKYDFIAVCN 140 (433)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~---~g~--~~~~d~vIvAt 140 (433)
...+ +.+. ......+..+.+.+.+.+.+.++ .++++++|+.+..+++.+. |++. +|+ ++.+|.||+|+
T Consensus 85 ~~~~---~~~~-~~~~i~r~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~Ad 158 (453)
T 3atr_A 85 QTVW---TVNG-EGFELNAPLYNQRVLKEAQDRGV--EIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEAT 158 (453)
T ss_dssp SCEE---EEEE-EEEEECHHHHHHHHHHHHHHTTC--EEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECC
T ss_pred ceEE---eECC-CcEEEcHHHHHHHHHHHHHHcCC--EEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECc
Confidence 0000 0000 01234678899999998888887 6999999999998776654 5443 565 68999999999
Q ss_pred CCCCC
Q psy2398 141 GAQRV 145 (433)
Q Consensus 141 G~~s~ 145 (433)
|.+|.
T Consensus 159 G~~s~ 163 (453)
T 3atr_A 159 GYSRS 163 (453)
T ss_dssp GGGCT
T ss_pred CCchh
Confidence 99764
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=118.77 Aligned_cols=175 Identities=13% Similarity=0.129 Sum_probs=108.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-CCCCcccCCCCCCc-----cccceEeecCCCc--------ccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-DLGGVWNSQASCGR-----VYPSLHLISPKFN--------TQVP 71 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~~Gg~~~~~~~~~~-----~~~~~~~~~~~~~--------~~~~ 71 (433)
..+||+|||||++|++||..|++.|.+|+|+|+.. .+|+.-... ..+. ....+.. ....+ ..|.
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnp-s~GGia~g~lv~elda-lgg~~~~~~d~~gi~f~ 103 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNP-AIGGIAKGIVVREIDA-LGGEMGKAIDQTGIQFK 103 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCS-EEECTTHHHHHHHHHH-HTCSHHHHHHHHEEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccc-cccccchHHHHHHHHH-hhhHHHHHhhhccccee
Confidence 35899999999999999999999999999999974 454311000 0000 0000000 00000 0000
Q ss_pred CCC---CCC-CCC-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCEEEEccCCCC
Q psy2398 72 DYP---MPD-NYP-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 72 ~~~---~~~-~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
... -+. +.+ ....+..+.+.+.+.+++. ++ .+ ++++|+.+..+++. +.|.+.+|..+.+|.||+|||.+
T Consensus 104 ~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GV--eI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~- 179 (637)
T 2zxi_A 104 MLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENL--YI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTF- 179 (637)
T ss_dssp EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTE--EE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTC-
T ss_pred ecccccCccccchhhhCCHHHHHHHHHHHHHhCCCC--EE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCC-
Confidence 000 000 000 1224577888888888874 66 35 57899999876554 45888888889999999999994
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 145 VARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 145 ~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.+.++|. .... ..+ + |+.++.+++..|.+.|.++..+.+.
T Consensus 180 -s~~~~~~G~----~~~~----------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~tg 221 (637)
T 2zxi_A 180 -LNGVIYIGD----KMIP----------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKTG 221 (637)
T ss_dssp -BTCEEEETT----EEEE----------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEEE
T ss_pred -ccCceeccc----eecC----------CCC---C-CchhHHHHHHHHHhcCCceEEecCC
Confidence 444445551 1111 112 2 3678899999999999888877654
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-10 Score=103.45 Aligned_cols=130 Identities=13% Similarity=0.227 Sum_probs=80.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCCCCc-ccCCCCCCccccceEeecCC--CcccCCCCCCCCCCCC-
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDLGGV-WNSQASCGRVYPSLHLISPK--FNTQVPDYPMPDNYPV- 81 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~Gg~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~- 81 (433)
.+||+|||||++|+++|..|++. |++|+|+|+.+.+||. |... ..+..+...... .+..+ ..++......
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~----~~~~~~~~~~~~~~~l~~~-G~~~~~~~~~~ 113 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGG----QLFSAMIVRKPAHLFLDEI-GVAYDEQDTYV 113 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCS----TTCCCEEEETTTHHHHHHH-TCCCEECSSEE
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCC----cchHHHHcCcHHHHHHHHc-CCCcccCCCEE
Confidence 47999999999999999999997 9999999999887653 3221 112222111110 00000 0111000000
Q ss_pred -CCCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeE-EEEEc---------cC-----cEEEeCEEEEccCCC
Q psy2398 82 -YPNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIW-EVELS---------NG-----KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 82 -~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~-~v~~~---------~g-----~~~~~d~vIvAtG~~ 143 (433)
.....++...+.+.+.+ .++ .++++++|+.+..+++.. .+.+. ++ .++.+|.||+|||..
T Consensus 114 ~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~ 190 (284)
T 1rp0_A 114 VVKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHD 190 (284)
T ss_dssp EESCHHHHHHHHHHHHHTSTTE--EEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSS
T ss_pred EecCHHHHHHHHHHHHHhcCCC--EEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCc
Confidence 11456666666666654 466 588999999998876543 33332 22 568999999999983
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-11 Score=116.16 Aligned_cols=137 Identities=16% Similarity=0.246 Sum_probs=86.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC------CCc--ccCCC--------C-----CCccccceEeecCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL------GGV--WNSQA--------S-----CGRVYPSLHLISPKF 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~------Gg~--~~~~~--------~-----~~~~~~~~~~~~~~~ 66 (433)
+||+|||||++|+++|..|++.|++|+|+|+.+.. ++. +.... . ....+..........
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 79999999999999999999999999999997631 111 00000 0 000011111111110
Q ss_pred cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEE-ccCc--EEEeCEEEEccC
Q psy2398 67 NTQVPDYPMP-DNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVEL-SNGK--KKKYDFIAVCNG 141 (433)
Q Consensus 67 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~-~~g~--~~~~d~vIvAtG 141 (433)
...+...... ........+..+.+.+.+.+.+.++ .++++++|++++.+ ++.+.|++ .+|. ++.+|.||.|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG 160 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGA--TTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDG 160 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTC--EEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCC
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCC--eEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCC
Confidence 0000000000 0011123567788888888877777 69999999999875 35678887 6776 689999999999
Q ss_pred CCCCC
Q psy2398 142 AQRVA 146 (433)
Q Consensus 142 ~~s~p 146 (433)
.+|..
T Consensus 161 ~~S~v 165 (394)
T 1k0i_A 161 FHGIS 165 (394)
T ss_dssp TTCST
T ss_pred CCcHH
Confidence 98754
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.5e-11 Score=116.99 Aligned_cols=177 Identities=11% Similarity=0.078 Sum_probs=107.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-CCCCcccCCCCCC----ccccceEeecCCC--------cccCC-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-DLGGVWNSQASCG----RVYPSLHLISPKF--------NTQVP- 71 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~~Gg~~~~~~~~~----~~~~~~~~~~~~~--------~~~~~- 71 (433)
..+||+|||||++|++||..|++.|.+|+|+|+.. .+|+.+......+ .....+.. .... ...|.
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~a-l~g~~~~~~d~~gi~f~~ 98 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDA-LGGEMGKAIDATGIQFRM 98 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHH-HTCSHHHHHHHHEEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHh-cccHHHHHHHhcCCchhh
Confidence 45899999999999999999999999999999975 4555332110000 00000000 0000 00000
Q ss_pred --CCCCCCCC-C-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEE-EEEccCcEEEeCEEEEccCCCCC
Q psy2398 72 --DYPMPDNY-P-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 72 --~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
...-+... + ....+..+.+.+.+.++++ ++ .+ ++..|+.+..+++.+. |.+.+|..+.+|.||+|||.++.
T Consensus 99 l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV--~I-~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 99 LNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNI--DL-LQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp ECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTE--EE-EECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred cccccCccccchhhhcCHHHHHHHHHHHHHhCCCC--EE-EeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 00000000 0 1234667888888888775 66 35 4668999887777665 88888888999999999999542
Q ss_pred CCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 146 ARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 146 p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.+.+.| .... .+.+++ |+.++++++..|.+.|.+|..+...
T Consensus 176 --~~i~~G----~~~~----------~~g~~v---G~~~a~~la~~L~~~G~kv~~l~tG 216 (641)
T 3cp8_A 176 --GLIHIG----MDHF----------PGGRST---AEPPVEGLTESLASLGFSFGRLKTG 216 (641)
T ss_dssp --CEEEET----TEEE----------ECSSST---TSCCBCSHHHHHHHTTCCEEEEEEE
T ss_pred --ccceee----eeee----------cccccc---CCchhhhhHHHHHhCCceEEeecCC
Confidence 222222 1100 011211 3678899999999999998776543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.8e-11 Score=113.94 Aligned_cols=134 Identities=16% Similarity=0.232 Sum_probs=79.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc-----ccCCCCC-------C-----------ccc--cceEee
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV-----WNSQASC-------G-----------RVY--PSLHLI 62 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~-----~~~~~~~-------~-----------~~~--~~~~~~ 62 (433)
.+|+||||||+||++|..|+++|++|+||||.+..... ....... . ..+ ......
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 81 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY 81 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence 48999999999999999999999999999997654211 0000000 0 000 000000
Q ss_pred cCC-CcccCCC--CCCCCCCC----CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeC
Q psy2398 63 SPK-FNTQVPD--YPMPDNYP----VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYD 134 (433)
Q Consensus 63 ~~~-~~~~~~~--~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d 134 (433)
... ....... .+...... ....+..+.+.+.+ . +...++++++|+.++.. ++.++|++.+|+++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~---~--~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~ad 156 (412)
T 4hb9_A 82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNK---G--LANTIQWNKTFVRYEHIENGGIKIFFADGSHENVD 156 (412)
T ss_dssp CTTSCEEEC--------------CEEEEEHHHHHHHHHT---T--CTTTEECSCCEEEEEECTTSCEEEEETTSCEEEES
T ss_pred cCCcceecccCCccccccccccccceEeeHHHHHHHHHh---h--ccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEee
Confidence 000 0000000 00000000 01224444444432 2 33469999999999876 56789999999999999
Q ss_pred EEEEccCCCCCC
Q psy2398 135 FIAVCNGAQRVA 146 (433)
Q Consensus 135 ~vIvAtG~~s~p 146 (433)
.||.|+|.+|.-
T Consensus 157 lvVgADG~~S~v 168 (412)
T 4hb9_A 157 VLVGADGSNSKV 168 (412)
T ss_dssp EEEECCCTTCHH
T ss_pred EEEECCCCCcch
Confidence 999999998743
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-10 Score=113.36 Aligned_cols=136 Identities=18% Similarity=0.138 Sum_probs=88.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC-CC-----------------CC-ccccceEeecC--C
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ-AS-----------------CG-RVYPSLHLISP--K 65 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~-~~-----------------~~-~~~~~~~~~~~--~ 65 (433)
.+||+|||||++|+++|..|++.|++|+|+|+.+..+...... .+ .. ........... .
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 4799999999999999999999999999999985432111000 00 00 00000000000 0
Q ss_pred C--cccCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEc-cC--cEEEeCEE
Q psy2398 66 F--NTQVPDYPM---PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELS-NG--KKKKYDFI 136 (433)
Q Consensus 66 ~--~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~-~g--~~~~~d~v 136 (433)
. ...+..... .........+..+.+++.+.+++.|+ .++++++|+.+..+ ++.+.|++. +| .++.+|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlV 180 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGI--TVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFV 180 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEE
Confidence 0 001111100 00111235688999999999988887 58899999999875 667888887 56 46999999
Q ss_pred EEccCCCC
Q psy2398 137 AVCNGAQR 144 (433)
Q Consensus 137 IvAtG~~s 144 (433)
|.|+|.+|
T Consensus 181 V~AdG~~S 188 (591)
T 3i3l_A 181 IDAGGSGG 188 (591)
T ss_dssp EECCGGGC
T ss_pred EECCCCcc
Confidence 99999966
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=110.53 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
...+.+.+.+.+++.++ +++++++|++++.+++.|.|++.++ ++.+|.||+|+|.++....+.
T Consensus 148 ~~~l~~~l~~~~~~~G~--~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~ 210 (372)
T 2uzz_A 148 SELAIKTWIQLAKEAGC--AQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVKDLLPE 210 (372)
T ss_dssp HHHHHHHHHHHHHHTTC--EEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGGGTSTT
T ss_pred HHHHHHHHHHHHHHCCC--EEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHHhhccc
Confidence 45777888888888887 5888999999998777788988877 499999999999976544443
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=116.62 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
....+...+.+.+++.|+ .++++++|+++..++++|.|++.+|.++.+|.||+|+|.++.
T Consensus 415 ~p~~l~~aL~~~a~~~Gv--~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 415 CPAELTRNVLELAQQQGL--QIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS 474 (676)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred CHHHHHHHHHHHHHhCCC--EEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence 356778888888888887 699999999999988889999988778999999999999753
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-10 Score=108.56 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEccCcEEEeCEEEEccCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g~~~~~d~vIvAtG~~s 144 (433)
....+.+.+.+.+++.++ +++++++|++++.+++.|. |++.++ ++.+|.||+|+|.++
T Consensus 147 ~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 147 DPFEATTAFAVKAKEYGA--KLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred CHHHHHHHHHHHHHHCCC--EEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 467788888888888887 6889999999998877887 888776 799999999999975
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=110.39 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=87.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCCCCCCcccC---CCC----------------CCccccceEeecCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMESDLGGVWNS---QAS----------------CGRVYPSLHLISPKF 66 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~~~Gg~~~~---~~~----------------~~~~~~~~~~~~~~~ 66 (433)
.+||+|||||++|+++|..|++.|++ |+|||+.+..+....- ... .......+.......
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g 83 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 83 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence 48999999999999999999999999 9999998765421110 000 000000111111100
Q ss_pred --cccCCCC-CCCCCCC-CCCCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeEEEEEcc---C--cEEEeCEE
Q psy2398 67 --NTQVPDY-PMPDNYP-VYPNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIWEVELSN---G--KKKKYDFI 136 (433)
Q Consensus 67 --~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g--~~~~~d~v 136 (433)
+...+.. ......+ ....+..+.+++.+.+.+ .+.. .++++++|+.++. ++++++++.+ | .++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~-~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~v 161 (410)
T 3c96_A 84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ-AVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVL 161 (410)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTT-SEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEE
T ss_pred CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCc-EEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEE
Confidence 0000000 0000011 234578888999888865 3521 5899999999988 6678888765 6 46899999
Q ss_pred EEccCCCCCC
Q psy2398 137 AVCNGAQRVA 146 (433)
Q Consensus 137 IvAtG~~s~p 146 (433)
|.|+|.+|..
T Consensus 162 V~AdG~~S~v 171 (410)
T 3c96_A 162 VGADGIHSAV 171 (410)
T ss_dssp EECCCTTCHH
T ss_pred EECCCccchh
Confidence 9999998754
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=115.02 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=89.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHh-cCCCeEEEccCCCCCCcccCCC--C-----------------CCccccceEeecC-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMESDLGGVWNSQA--S-----------------CGRVYPSLHLISP- 64 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~v~e~~~~~Gg~~~~~~--~-----------------~~~~~~~~~~~~~- 64 (433)
..+||+|||||++||++|..|++ .|++|+|||+.+..+....-.. + .+..........+
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~ 110 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD 110 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence 45799999999999999999999 9999999999876532111000 0 0000011111110
Q ss_pred ----CCcc---cCCCCCCCC-CC-CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC----eEEEEEc-----
Q psy2398 65 ----KFNT---QVPDYPMPD-NY-PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED----IWEVELS----- 126 (433)
Q Consensus 65 ----~~~~---~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~----~~~v~~~----- 126 (433)
..+. .++...... .. .....+..+.++|.+.+.+.++...++++++|+.++.+++ .+.+++.
T Consensus 111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~ 190 (639)
T 2dkh_A 111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAA 190 (639)
T ss_dssp TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGG
T ss_pred CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecccc
Confidence 0010 011000000 01 1235678899999999998875335899999999998642 5777765
Q ss_pred -cC--cEEEeCEEEEccCCCCC
Q psy2398 127 -NG--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 127 -~g--~~~~~d~vIvAtG~~s~ 145 (433)
+| .++++|+||.|+|.+|.
T Consensus 191 ~~G~~~~i~a~~vVgADG~~S~ 212 (639)
T 2dkh_A 191 HAGQIETVQARYVVGCDGARSN 212 (639)
T ss_dssp GTTCEEEEEEEEEEECCCTTCH
T ss_pred CCCCeEEEEeCEEEECCCcchH
Confidence 35 46899999999999874
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=108.81 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
......+.+.+.+.+++.++ +++++++|++++.+++.|.|++.++ ++.+|.||+|+|.++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~g~--~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 160 HVEPYFVCKAYVKAAKMLGA--EIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSG 220 (382)
T ss_dssp BCCHHHHHHHHHHHHHHTTC--EEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTH
T ss_pred EEcHHHHHHHHHHHHHHCCC--EEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHH
Confidence 34567888888888888887 5888999999988777788888776 7999999999999754
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.3e-11 Score=111.66 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
....+.+.+.+.+++.|+ +++++++|+++..+++.|.|++.++ ++.+|.||+|+|.++.
T Consensus 152 ~~~~~~~~l~~~a~~~Gv--~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~ 210 (381)
T 3nyc_A 152 DTDALHQGYLRGIRRNQG--QVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCD 210 (381)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHH
T ss_pred CHHHHHHHHHHHHHHCCC--EEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHH
Confidence 456778888888888887 5889999999999888899998877 7999999999999753
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.9e-10 Score=110.63 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=86.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC-----CCccc------cceE------------eec
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS-----CGRVY------PSLH------------LIS 63 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~-----~~~~~------~~~~------------~~~ 63 (433)
.+||+|||||++|+++|..|++.|.+|+|+||.+..||....... ..... .+.. ...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 205 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 579999999999999999999999999999999988775433211 00000 0000 000
Q ss_pred CC--------------Cc----ccCCCC--CCCCCCC-------CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE
Q psy2398 64 PK--------------FN----TQVPDY--PMPDNYP-------VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ 116 (433)
Q Consensus 64 ~~--------------~~----~~~~~~--~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~ 116 (433)
+. ++ ..|... .....++ .......+.+.|.+.+++.++ .++++++|+++..
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv--~i~~~~~v~~l~~ 283 (571)
T 1y0p_A 206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNI--DLRMNTRGIEVLK 283 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTC--EEESSEEEEEEEE
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCC--EEEeCCEeeEeEE
Confidence 00 00 001000 0000000 012357788889998988888 6999999999988
Q ss_pred eC-CeE-EEEEc--cCc--EEEeCEEEEccCCCCC
Q psy2398 117 YE-DIW-EVELS--NGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 117 ~~-~~~-~v~~~--~g~--~~~~d~vIvAtG~~s~ 145 (433)
++ +.. -|.+. +|+ ++.+|.||+|||.++.
T Consensus 284 ~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 284 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence 65 432 23333 564 5889999999999753
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=116.17 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAtG~~s~ 145 (433)
....+.+.+.+.+++.|+ .++++++|+++..++++|.|.+.+|. ++.+|.||+|+|.++.
T Consensus 410 ~p~~l~~aL~~~a~~~Gv--~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~ 470 (689)
T 3pvc_A 410 CPSDLTHALMMLAQQNGM--TCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP 470 (689)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred CHHHHHHHHHHHHHhCCC--EEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence 356777888888888887 69999999999998778999998876 7999999999999753
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=109.50 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=86.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC-----CCc------cccceE------------ee
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS-----CGR------VYPSLH------------LI 62 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~-----~~~------~~~~~~------------~~ 62 (433)
..+||+|||||++|+++|..|++.|.+|+||||.+..||....... ... ...+.. ..
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~ 199 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN 199 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence 3479999999999999999999999999999999887764322110 000 000000 00
Q ss_pred cCC--------------Cc----ccC------CCCCCCCCC-C--CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEE
Q psy2398 63 SPK--------------FN----TQV------PDYPMPDNY-P--VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE 115 (433)
Q Consensus 63 ~~~--------------~~----~~~------~~~~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~ 115 (433)
.+. ++ ..| .....+... + .......+.+.|.+.+++.++ .++++++|+++.
T Consensus 200 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv--~i~~~~~v~~l~ 277 (566)
T 1qo8_A 200 DIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGI--DTRLNSRVVKLV 277 (566)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTC--CEECSEEEEEEE
T ss_pred CHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCC--EEEeCCEEEEEE
Confidence 000 00 000 000000000 0 112367788889888988888 599999999998
Q ss_pred EeC-Ce---EEEEEccCc--EEEeCEEEEccCCCCC
Q psy2398 116 QYE-DI---WEVELSNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 116 ~~~-~~---~~v~~~~g~--~~~~d~vIvAtG~~s~ 145 (433)
.++ +. +.+...+|+ ++.+|.||+|||.++.
T Consensus 278 ~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 278 VNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp ECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred ECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 765 54 333333564 5889999999999764
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.9e-10 Score=109.92 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEccCcEEEeCEEEEccCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g~~~~~d~vIvAtG~~ 143 (433)
+.+.+.+.+++.|. .|+++++|++|..++++++ |++.+|+++.||.||.+++..
T Consensus 223 l~~aL~~~~~~~Gg--~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 223 LVQGMIKLFQDLGG--EVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHTTC--EEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred hHHHHHHHHHHhCC--ceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence 44445555666666 6999999999999888776 889999999999999998863
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-10 Score=107.73 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=38.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
++||+|||||++|++||..|++.|.+|+|+|+++.+||.+.
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 41 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAY 41 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeec
Confidence 37999999999999999999999999999999988988765
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-10 Score=106.33 Aligned_cols=57 Identities=16% Similarity=0.037 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
...+.+.+.+.+++.++ .++++++|+++..+++.|.|++.++ ++.+|.||+|+|.++
T Consensus 152 ~~~~~~~l~~~a~~~Gv--~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 152 VRGTLAALFTLAQAAGA--TLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCC--EEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcCh
Confidence 35667777777878787 5899999999998878888888766 699999999999864
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-09 Score=102.28 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
...+.+.+.+.+++.++ +++++++|++++.+++.|.|++.++ ++.+|.||+|+|.++.
T Consensus 149 ~~~~~~~l~~~~~~~Gv--~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 149 SENCIRAYRELAEARGA--KVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNS 206 (389)
T ss_dssp HHHHHHHHHHHHHHTTC--EEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHH
T ss_pred HHHHHHHHHHHHHHCCC--EEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHH
Confidence 46788888888888888 5888999999998777788888766 6999999999998653
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-09 Score=104.01 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.....+.+.+.+.+++.++ +++++++|+.+..+++ .+.|++.++ ++.+|.||+|+|.++
T Consensus 171 ~~~~~~~~~l~~~~~~~g~--~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 171 AKHDHVAWAFARKANEMGV--DIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp CCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred CCHHHHHHHHHHHHHHCCC--EEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 3456788888888888887 6899999999998644 477888877 699999999999865
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-09 Score=98.62 Aligned_cols=131 Identities=16% Similarity=0.248 Sum_probs=79.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCC-cccCCCCCCccccceEeecCCCcccCCC--CCCCC--CC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGG-VWNSQASCGRVYPSLHLISPKFNTQVPD--YPMPD--NY 79 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~ 79 (433)
.+||+|||||++|+++|..|+++ |++|+|+|+...+|| .|... ..+...... +.....+.. .++.. .+
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g----~~~~~~~~~-~~~~~~L~~~Gv~~~~~G~~ 153 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGG----QLFSAMVMR-KPADVFLDEVGVPYEDEGDY 153 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCB----TTCCCEEEE-TTTHHHHHHHTCCCEECSSE
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCC----ccchhhhcc-hHHHHHHHHcCCcccccCCe
Confidence 47999999999999999999997 999999999987764 44322 122222222 111110000 00000 01
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeC-----------------CeEEE---EE------c------
Q psy2398 80 PVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYE-----------------DIWEV---EL------S------ 126 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~-----------------~~~~v---~~------~------ 126 (433)
.......++.+.+.+.+... ++ .+++++.|+.+..++ +...| .+ .
T Consensus 154 ~~~~~~~d~~~~L~~~a~~~~gV--~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~ 231 (344)
T 3jsk_A 154 VVVKHAALFTSTVLSKVLQRPNV--KLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQS 231 (344)
T ss_dssp EEESCHHHHHHHHHHHHHTCTTE--EEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSS
T ss_pred EEEecHHHHHHHHHHHHHhCCCC--EEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCccc
Confidence 11123456667777666663 66 588899998887653 21111 11 1
Q ss_pred --cCcEEEeCEEEEccCCCC
Q psy2398 127 --NGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 127 --~g~~~~~d~vIvAtG~~s 144 (433)
+..++.+++||+|||+.+
T Consensus 232 ~~d~~~i~Ak~VV~ATG~~s 251 (344)
T 3jsk_A 232 AMDPNTINAPVIISTTGHDG 251 (344)
T ss_dssp CCBCEEEECSEEEECCCSSS
T ss_pred ccCceEEEcCEEEECCCCCc
Confidence 224689999999999854
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.5e-09 Score=101.44 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---cCc--EEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g~--~~~~d~vIvAtG~~s~ 145 (433)
....+...+.+.+.+.|+ .++++++|+++..+++.|.|++. +|+ ++.+|.||+|+|.++.
T Consensus 147 ~~~~l~~~l~~~a~~~Gv--~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 147 DDARLVLANAQMVVRKGG--EVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred cHHHHHHHHHHHHHHcCC--EEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 356777888888888887 58889999999988778888874 454 6899999999999753
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-09 Score=109.26 Aligned_cols=137 Identities=16% Similarity=0.172 Sum_probs=86.6
Q ss_pred CCcEEEECCChHHHHHHHHHHh-----cCCCeEEEccCCCCCCc---ccCCC----------------CCCccccceEee
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE-----GNINYDLYEMESDLGGV---WNSQA----------------SCGRVYPSLHLI 62 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~-----~g~~v~v~e~~~~~Gg~---~~~~~----------------~~~~~~~~~~~~ 62 (433)
.+||+||||||+||++|..|++ .|++|+|||+.+..... ..... ........+...
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~ 87 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY 87 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence 5799999999999999999999 99999999997643210 00000 001111111111
Q ss_pred cCC---Ccc---cCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHcC---CCcceEeCcEEEEEEEeC--------CeEEE
Q psy2398 63 SPK---FNT---QVPDYPM--PDNYPVYPNHSMMLDYLRSYAKKFD---VYNHSIFNTEVINLEQYE--------DIWEV 123 (433)
Q Consensus 63 ~~~---~~~---~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~~~~V~~v~~~~--------~~~~v 123 (433)
.+. .+. .+++... ........++..+.++|.+.+.+.+ + .++++++|+.++.++ ..+++
T Consensus 88 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v--~v~~g~~v~~~~~d~~~~~~~~~~~V~v 165 (665)
T 1pn0_A 88 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRI--KVERPLIPEKMEIDSSKAEDPEAYPVTM 165 (665)
T ss_dssp EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSS--CEECSEEEEEEEECGGGTTCTTCCCEEE
T ss_pred eCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCce--EEEeCCEEEEEEecCcccccCCCCCEEE
Confidence 110 010 0111000 0011123568889999999888876 5 599999999998864 35666
Q ss_pred EEc------------------------------------------cC--cEEEeCEEEEccCCCCC
Q psy2398 124 ELS------------------------------------------NG--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 124 ~~~------------------------------------------~g--~~~~~d~vIvAtG~~s~ 145 (433)
++. +| .++++|+||.|+|.+|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~ 231 (665)
T 1pn0_A 166 TLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSW 231 (665)
T ss_dssp EEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCH
T ss_pred EEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCH
Confidence 653 34 46899999999999875
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-09 Score=106.30 Aligned_cols=59 Identities=7% Similarity=-0.105 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEEcc---C--cEEEeCEEEEccCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSN---G--KKKKYDFIAVCNGAQR 144 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~~~---g--~~~~~d~vIvAtG~~s 144 (433)
....+...+...+.+.|. .++++++|+++..+++. |.|++.+ | .++.+|.||+|+|.++
T Consensus 168 d~~~l~~~L~~~a~~~G~--~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 168 DDARLTLEIMKEAVARGA--VALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 346677777777888887 58999999999988665 4576654 3 3689999999999975
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.3e-09 Score=101.60 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=37.0
Q ss_pred ceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 104 HSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 104 ~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.|+++++|++|+.++++|.|++.+|+++.||.||+|+....
T Consensus 249 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~ 289 (470)
T 3i6d_A 249 KVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKA 289 (470)
T ss_dssp EEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHH
T ss_pred EEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHH
Confidence 68999999999998778999999998899999999998743
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=100.36 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=36.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
.+||+|||||++||++|..|++.|.+|+|+||.+..||.
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~ 79 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA 79 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence 479999999999999999999999999999999988764
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-10 Score=108.37 Aligned_cols=58 Identities=16% Similarity=0.019 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEE---------EEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVI---------NLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~---------~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
....+.+.+.+.+++.++ .+.++++|+ .+..+++.|.|.+.++ ++.+|.||+|+|.++
T Consensus 170 ~~~~l~~~L~~~~~~~Gv--~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 170 RPGSLALLAAQQAIGQGA--GLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp CHHHHHHHHHHHHHTTTC--EEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHCCC--EEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence 346678888888888787 588899999 7776666677766665 799999999999975
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-09 Score=107.03 Aligned_cols=60 Identities=18% Similarity=0.406 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC--eEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~--~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
..+..+.+++.+.+++.++ .++++ +|+.++.+++ .+.|++.+|.++.+|.||+|+|.+|.
T Consensus 162 i~~~~l~~~L~~~a~~~gv--~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 162 FDAHLVADFLKRWAVERGV--NRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp ECHHHHHHHHHHHHHHTTC--EEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred EeHHHHHHHHHHHHHHCCC--EEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 3568889999999988887 57888 8999988633 36788888878999999999999664
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-08 Score=100.03 Aligned_cols=137 Identities=16% Similarity=0.121 Sum_probs=84.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC-----CCccccceEe-ecC-----------C----
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS-----CGRVYPSLHL-ISP-----------K---- 65 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~-----~~~~~~~~~~-~~~-----------~---- 65 (433)
.+||+|||||++|+++|..|++.|.+|+|+|+.+..||....... .......... .+. .
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 205 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 469999999999999999999999999999999888765432210 0000000000 000 0
Q ss_pred ----------------Cc----ccCC------CCCCCCCC-C--CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE
Q psy2398 66 ----------------FN----TQVP------DYPMPDNY-P--VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ 116 (433)
Q Consensus 66 ----------------~~----~~~~------~~~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~ 116 (433)
++ ..|. ....+... + .......+.+.|.+.+++.++ +++++++|+++..
T Consensus 206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv--~i~~~t~v~~l~~ 283 (572)
T 1d4d_A 206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGT--DIRLNSRVVRILE 283 (572)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTC--EEESSEEEEEEEE
T ss_pred HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCC--eEEecCEEEEEEE
Confidence 00 0000 00000000 0 012356788889888988888 6999999999976
Q ss_pred eC-Ce-EEEEEc--cCc--EEEeCEEEEccCCCCC
Q psy2398 117 YE-DI-WEVELS--NGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 117 ~~-~~-~~v~~~--~g~--~~~~d~vIvAtG~~s~ 145 (433)
++ +. +-|.+. +|+ ++.+|.||+|||.++.
T Consensus 284 ~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 284 DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp C--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 54 43 234433 554 5889999999999653
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-09 Score=107.31 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCe--EEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~--~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
..+..+.+++.+.+++. |+ .++++ +|+.+..++++ +.|++.+|.++.+|.||+|+|.+|.
T Consensus 191 ~~~~~l~~~L~~~~~~~~Gv--~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 191 FDAHLVADFLRRFATEKLGV--RHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL 253 (550)
T ss_dssp ECHHHHHHHHHHHHHHHSCC--EEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred EcHHHHHHHHHHHHHhcCCc--EEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence 56788999999999988 88 58889 99999876433 6788888878999999999998653
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-08 Score=98.87 Aligned_cols=102 Identities=19% Similarity=0.139 Sum_probs=83.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||++|+.+|..|++.|.+|+++|+.+.+. + . ..
T Consensus 166 ~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l--------------------------------~----~--~~ 207 (455)
T 2yqu_A 166 VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL--------------------------------P----T--MD 207 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--------------------------------T----T--SC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc--------------------------------c----c--cC
Confidence 34789999999999999999999999999999876431 0 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.+++.+.+++.++.++.+|.||+|+|. .|+.+
T Consensus 208 ~~~~~~l~~~l~~~Gv--~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~--~p~~~ 267 (455)
T 2yqu_A 208 LEVSRAAERVFKKQGL--TIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGR--RPYTE 267 (455)
T ss_dssp HHHHHHHHHHHHHHTC--EEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE--EECCT
T ss_pred HHHHHHHHHHHHHCCC--EEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCC--CcCCC
Confidence 5667777777788888 589999999999887778888878888999999999998 55554
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-09 Score=100.73 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=37.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
+||+|||||++||+||..|++.|.+|+|+|+++.+||...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT 40 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCcee
Confidence 4899999999999999999999999999999999887654
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-08 Score=101.49 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCe--EEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~--~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
..+..+.+++.+.+.+ .++ .++++ +|+.++.++++ +.|++.+|.++.+|.||.|+|.+|.
T Consensus 172 ~~r~~l~~~L~~~a~~~~Gv--~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGV--THIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp ECHHHHHHHHHHHHHHTSCC--EEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred EcHHHHHHHHHHHHHhcCCC--EEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 4578899999999988 788 58888 69999886433 4677777767999999999999764
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.8e-09 Score=100.98 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+||+|||||++||++|..|++.|.+|+|+|+++.+||....
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTN 41 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEE
Confidence 48999999999999999999999999999999999886543
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=7.4e-09 Score=102.53 Aligned_cols=42 Identities=21% Similarity=0.447 Sum_probs=38.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
.++||+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~ 44 (520)
T 1s3e_A 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY 44 (520)
T ss_dssp CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcee
Confidence 457999999999999999999999999999999999988653
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.4e-09 Score=103.25 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe--EEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~--~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
..+..+.+.+.+.+.+.|+ .++++ +|+.++.++++ +.|++.+|+++.+|.||.|+|.+|.
T Consensus 170 ~~~~~l~~~L~~~a~~~gv--~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGV--RHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTC--EEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred EcHHHHHHHHHHHHHHCCC--EEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 4578899999999988887 58888 99999886433 6788888878999999999999764
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.8e-09 Score=107.63 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEEccCcEEEeCEEEEccCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
....+.+.+.+.+++.|+ +++++++|++++.+++.+ .|.+.+| ++.||.||+|+|.++
T Consensus 149 ~p~~l~~~L~~~a~~~Gv--~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 149 SAARAVQLLIKRTESAGV--TYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCC--EEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence 456788888888888887 588899999999876664 5777776 799999999999975
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-08 Score=94.51 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=83.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.. . ....
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------~-~~~~ 187 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP------------------------------------G-LLHP 187 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------T-TSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh------------------------------------c-ccCH
Confidence 57899999999999999999999999999998764310 0 0125
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ +++++++|++++.+++.+.+++.+|+++.+|.||+|+|. .|+.
T Consensus 188 ~~~~~l~~~l~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~--~p~~ 245 (384)
T 2v3a_A 188 AAAKAVQAGLEGLGV--RFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGL--RPRT 245 (384)
T ss_dssp HHHHHHHHHHHTTTC--EEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE--EECC
T ss_pred HHHHHHHHHHHHcCC--EEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCC--CcCH
Confidence 667788888888888 589999999999887788899988888999999999998 4443
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-09 Score=97.14 Aligned_cols=41 Identities=24% Similarity=0.477 Sum_probs=38.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+||+||||||+||+||..|+++|++|+||||.+.+||.+..
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~ 43 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence 79999999999999999999999999999999999987653
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-08 Score=96.63 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=83.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.. ....
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------------~~~~ 210 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP--------------------------------------QGDP 210 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST--------------------------------------TSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc--------------------------------------ccCH
Confidence 47899999999999999999999999999998765410 0125
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc-c--Cc--EEEeCEEEEccCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-N--GK--KKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~-~--g~--~~~~d~vIvAtG~~s~p~~p~ 150 (433)
++.+.+.+..++.++ +++++++|++++.+++.+.+++. + |+ ++.+|.||+|+|. .|+.+.
T Consensus 211 ~~~~~l~~~l~~~gV--~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~--~p~~~~ 275 (464)
T 2eq6_A 211 ETAALLRRALEKEGI--RVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR--KPRTEG 275 (464)
T ss_dssp HHHHHHHHHHHHTTC--EEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCE--EESCTT
T ss_pred HHHHHHHHHHHhcCC--EEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc--ccCCCC
Confidence 677788888888888 59999999999987777778775 5 66 7999999999998 666543
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=91.42 Aligned_cols=104 Identities=18% Similarity=0.369 Sum_probs=64.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC-CcccCCCCCCccccceEeecCC--CcccCCCCCCCC--CC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG-GVWNSQASCGRVYPSLHLISPK--FNTQVPDYPMPD--NY 79 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G-g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 79 (433)
.+||+|||||++|+++|..|++. |++|+|+|+.+..| |.|... ..+......... .+..+ ..++.. .+
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g----~~~~~~~~~~~~~~~L~~~-Gv~~~~~g~~ 139 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGG----QLFSAMVMRKPAHLFLQEL-EIPYEDEGDY 139 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCG----GGCCCEEEETTTHHHHHHT-TCCCEECSSE
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccC----cccchhhhhhHHHHHHHhh-CcccccCCCe
Confidence 35999999999999999999998 99999999998887 445322 122222222110 00000 011100 00
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEe
Q psy2398 80 PVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQY 117 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~ 117 (433)
.......++.+.+.+.+... ++ .++.+++|+.+..+
T Consensus 140 ~~~~~~~~~~~~L~~~a~~~~GV--~i~~~~~V~~Ll~~ 176 (326)
T 2gjc_A 140 VVVKHAALFISTVLSKVLQLPNV--KLFNATCVEDLVTR 176 (326)
T ss_dssp EEESCHHHHHHHHHHHHHTSTTE--EEETTEEEEEEEEC
T ss_pred EEEcchHHHHHHHHHHHHHhcCc--EEEecceeeeeeec
Confidence 01113566677777767664 66 57889999999775
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.1e-08 Score=94.87 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=83.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .+ .
T Consensus 165 ~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------~~--~ 206 (463)
T 2r9z_A 165 QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF------------------------------------QF--D 206 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------TS--C
T ss_pred cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc------------------------------------cc--C
Confidence 357899999999999999999999999999998765410 01 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.+++.+.|++.+|+ ++.+|.||+|+|. .|+..
T Consensus 207 ~~~~~~l~~~l~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~--~p~~~ 267 (463)
T 2r9z_A 207 PLLSATLAENMHAQGI--ETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGR--APNTR 267 (463)
T ss_dssp HHHHHHHHHHHHHTTC--EEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCE--EESCT
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCC--CcCCC
Confidence 4566777777888888 58999999999987667888898888 8999999999998 66653
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5e-08 Score=94.62 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=82.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.. .+ .
T Consensus 166 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~~--~ 207 (450)
T 1ges_A 166 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP------------------------------------SF--D 207 (450)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------TS--C
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh------------------------------------hh--h
Confidence 357899999999999999999999999999998765310 01 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.++ +.+.+++.+|+++.+|.||+|+|. .|+..
T Consensus 208 ~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~--~p~~~ 268 (450)
T 1ges_A 208 PMISETLVEVMNAEGP--QLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGR--EPAND 268 (450)
T ss_dssp HHHHHHHHHHHHHHSC--EEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE--EESCT
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCC--CcCCC
Confidence 4567777788888888 589999999998764 347888888888999999999998 66654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-08 Score=94.11 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.. . ..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~--~~ 210 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------------------------------------G--FE 210 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------T--SC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc------------------------------------c--cC
Confidence 357999999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---cCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+++.+..++.++ +++++++|++++.+++...+++. ++.++.+|.||+|+|. .|+.+
T Consensus 211 ~~~~~~l~~~l~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~--~p~~~ 273 (455)
T 1ebd_A 211 KQMAAIIKKRLKKKGV--EVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGR--RPNTD 273 (455)
T ss_dssp HHHHHHHHHHHHHTTC--EEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCE--EESCS
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCC--CcccC
Confidence 5667778888888888 58999999999987766777764 3457899999999998 56543
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-08 Score=94.46 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=86.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
...+.+++|||||+.|+..|..+++.|.+|+++++...+ +.
T Consensus 220 ~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L-------------------------------------~~-- 260 (542)
T 4b1b_A 220 KKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL-------------------------------------RG-- 260 (542)
T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS-------------------------------------TT--
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc-------------------------------------cc--
Confidence 345689999999999999999999999999999875322 01
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
...++.+.+....++.++ .+++++.+..++..++...+.+.++..+.+|.|++|+|. .|+..
T Consensus 261 ~D~ei~~~l~~~l~~~gi--~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR--~Pnt~ 322 (542)
T 4b1b_A 261 FDQQCAVKVKLYMEEQGV--MFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR--KGDID 322 (542)
T ss_dssp SCHHHHHHHHHHHHHTTC--EEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE--EESCG
T ss_pred cchhHHHHHHHHHHhhcc--eeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc--cCCcc
Confidence 125677888888888888 589999999999988999999998888999999999997 66654
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=98.85 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=37.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVW 46 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~ 46 (433)
++||+|||||++||++|..|++.| .+|+|+|+++.+||.+
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~ 45 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKV 45 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTC
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCcee
Confidence 479999999999999999999999 9999999999888853
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=99.95 Aligned_cols=142 Identities=11% Similarity=0.055 Sum_probs=84.5
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc---------ccCCCC-CCccccceE---eecCCCc
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV---------WNSQAS-CGRVYPSLH---LISPKFN 67 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~---------~~~~~~-~~~~~~~~~---~~~~~~~ 67 (433)
|++....+||+|||||++|+++|..|++.|.+|+|+||....+|. +..... ..+ +.... +......
T Consensus 1 m~~~~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds-~~~~~~d~~~~g~~~ 79 (588)
T 2wdq_A 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDN-WEWHMYDTVKGSDYI 79 (588)
T ss_dssp CCSCEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCC-HHHHHHHHHHHTTTC
T ss_pred CCCccccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCC-HHHHHHHHHHhcCCC
Confidence 565555689999999999999999999999999999998755321 111110 000 00000 0000000
Q ss_pred ------------------------ccCCCCC--------CCCC--------CCC--C---CCHHHHHHHHHHHHHHcCCC
Q psy2398 68 ------------------------TQVPDYP--------MPDN--------YPV--Y---PNHSMMLDYLRSYAKKFDVY 102 (433)
Q Consensus 68 ------------------------~~~~~~~--------~~~~--------~~~--~---~~~~~~~~~l~~~~~~~~~~ 102 (433)
..|.... .+.. ... + .....+.+.+.+.+.+.++
T Consensus 80 ~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv- 158 (588)
T 2wdq_A 80 GDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT- 158 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCC-
Confidence 0010000 0000 000 0 0135677888888888787
Q ss_pred cceEeCcEEEEEEEe-CCe-EEEEE---ccCc--EEEeCEEEEccCCCCC
Q psy2398 103 NHSIFNTEVINLEQY-EDI-WEVEL---SNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 103 ~~i~~~~~V~~v~~~-~~~-~~v~~---~~g~--~~~~d~vIvAtG~~s~ 145 (433)
.+++++.|+.+..+ ++. +-|.. .+++ .+.++.||+|||.++.
T Consensus 159 -~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~ 207 (588)
T 2wdq_A 159 -TIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_dssp -EEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred -EEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence 69999999999875 443 23333 3454 5889999999999753
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=9e-08 Score=93.64 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=82.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+... ..
T Consensus 182 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~ 223 (478)
T 1v59_A 182 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS--------------------------------------MD 223 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS--------------------------------------SC
T ss_pred cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc--------------------------------------cC
Confidence 3578999999999999999999999999999998754110 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEE--eCCeEEEEEc-----cCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ--YEDIWEVELS-----NGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~--~~~~~~v~~~-----~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+++.+..++.++ +++++++|++++. +++.+.+++. ++.++.+|.||+|+|. .|+..
T Consensus 224 ~~~~~~l~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~--~p~~~ 290 (478)
T 1v59_A 224 GEVAKATQKFLKKQGL--DFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR--RPYIA 290 (478)
T ss_dssp HHHHHHHHHHHHHTTC--EEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE--EECCT
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC--CcCCC
Confidence 5677888888888888 5999999999987 5566777765 3457899999999998 66554
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.8e-08 Score=95.97 Aligned_cols=138 Identities=11% Similarity=0.122 Sum_probs=80.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCC--------cccCCCCCCccccce---EeecCCCc-----
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGG--------VWNSQASCGRVYPSL---HLISPKFN----- 67 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg--------~~~~~~~~~~~~~~~---~~~~~~~~----- 67 (433)
..+||+|||||++|+++|..|++.| .+|+|+||....++ ......+..+ +... .+.....+
T Consensus 4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds-~~~~~~d~~~~g~~~~d~~~ 82 (602)
T 1kf6_A 4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDS-FEYHFHDTVAGGDWLCEQDV 82 (602)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCC-HHHHHHHHHHHTTTCSCHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCC-HHHHHHHHHHhcCCCCCHHH
Confidence 4579999999999999999999999 99999999765432 1111000000 0000 00000000
Q ss_pred -------------------ccCCCCC--------CCCC-CC--CCC---CHHHHHHHHHHHHHHcC-CCcceEeCcEEEE
Q psy2398 68 -------------------TQVPDYP--------MPDN-YP--VYP---NHSMMLDYLRSYAKKFD-VYNHSIFNTEVIN 113 (433)
Q Consensus 68 -------------------~~~~~~~--------~~~~-~~--~~~---~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~ 113 (433)
..|.... ++.. .+ .+. ....+...+.+.+.+.+ + .+++++.|+.
T Consensus 83 v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv--~i~~~~~v~~ 160 (602)
T 1kf6_A 83 VDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQI--QRFDEHFVLD 160 (602)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTE--EEEETEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCc--EEEeCCEEEE
Confidence 0011000 0000 00 001 13567777777777666 5 5888999999
Q ss_pred EEEeCCe---EEEE-EccCc--EEEeCEEEEccCCCCCC
Q psy2398 114 LEQYEDI---WEVE-LSNGK--KKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 114 v~~~~~~---~~v~-~~~g~--~~~~d~vIvAtG~~s~p 146 (433)
+..+++. ..+. +.+|+ .+.++.||+|||.++..
T Consensus 161 l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~ 199 (602)
T 1kf6_A 161 ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 199 (602)
T ss_dssp EEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred EEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence 9887553 2222 24565 58999999999997644
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-09 Score=100.57 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=76.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCC---CCcccCCCC--C----Cccc-c-----------ceEeecC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDL---GGVWNSQAS--C----GRVY-P-----------SLHLISP 64 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~---Gg~~~~~~~--~----~~~~-~-----------~~~~~~~ 64 (433)
+||+|||||++|+++|..|++. |++|+|+|+.+.. |+....... . .... . ...+...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 4899999999999999999999 9999999998765 321111000 0 0000 0 0000000
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
... +.. ...... ....+.++.+.+.+.+...++ .++++++|+.++.. .++.+|.||+|+|.+|
T Consensus 81 g~~--~~~-~~~~~~-~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S 143 (381)
T 3c4a_A 81 NEP--SLM-STGVLL-CGVERRGLVHALRDKCRSQGI--AIRFESPLLEHGEL-----------PLADYDLVVLANGVNH 143 (381)
T ss_dssp SSE--EEC-CCCSCE-EEEEHHHHHHHHHHHHHHTTC--EEETTCCCCSGGGC-----------CGGGCSEEEECCGGGG
T ss_pred Cee--EEe-cCCCce-eeecHHHHHHHHHHHHHHCCC--EEEeCCEeccchhc-----------ccccCCEEEECCCCCc
Confidence 000 000 000000 134688999999999988887 58999998877531 1258999999999987
Q ss_pred C
Q psy2398 145 V 145 (433)
Q Consensus 145 ~ 145 (433)
.
T Consensus 144 ~ 144 (381)
T 3c4a_A 144 K 144 (381)
T ss_dssp G
T ss_pred h
Confidence 6
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.8e-08 Score=94.11 Aligned_cols=101 Identities=24% Similarity=0.257 Sum_probs=82.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.. . -.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------~--~~ 225 (482)
T 1ojt_A 184 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ------------------------------------G--AD 225 (482)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------T--SC
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc------------------------------------c--cC
Confidence 357999999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc----CcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN----GKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~----g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.++ +++++++|.+++.+++...+++.+ ++++.+|.||+|+|. .|+.
T Consensus 226 ~~~~~~l~~~l~~~gV--~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~--~p~~ 288 (482)
T 1ojt_A 226 RDLVKVWQKQNEYRFD--NIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR--APNG 288 (482)
T ss_dssp HHHHHHHHHHHGGGEE--EEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE--EECG
T ss_pred HHHHHHHHHHHHhcCC--EEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC--CcCC
Confidence 5667777777877787 589999999999877777788776 667899999999998 5554
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.8e-08 Score=93.68 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE---------------eCCe-EEEEEccCcEE--EeCEEEEccCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ---------------YEDI-WEVELSNGKKK--KYDFIAVCNGAQR 144 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~---------------~~~~-~~v~~~~g~~~--~~d~vIvAtG~~s 144 (433)
....+.+.+.+.+++.|+ +++++++|+++.. +++. |.|.+.+| ++ .+|.||+|+|.++
T Consensus 179 ~~~~l~~~L~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s 254 (448)
T 3axb_A 179 DAEKVVDYYYRRASGAGV--EFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS 254 (448)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHhCCC--EEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence 456788888888888887 5889999999987 4443 56788777 58 9999999999865
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=94.65 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=35.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||||++|+++|+.|++.|++|+|+|+.+..+|
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G 69 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG 69 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence 458999999999999999999999999999999865444
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=92.40 Aligned_cols=101 Identities=16% Similarity=0.304 Sum_probs=82.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . -..
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~--~d~ 217 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR------------------------------------K--FDE 217 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT------------------------------------T--SCH
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc------------------------------------c--cch
Confidence 57899999999999999999999999999998765410 0 125
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEccCcE-EEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKK-KKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g~~-~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|++++.++ +.+.+++.+|++ +.+|.||+|+|. .|+..
T Consensus 218 ~~~~~l~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~--~p~~~ 278 (500)
T 1onf_A 218 SVINVLENDMKKNNI--NIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR--SPDTE 278 (500)
T ss_dssp HHHHHHHHHHHHTTC--EEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB--CCTTT
T ss_pred hhHHHHHHHHHhCCC--EEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC--CcCCC
Confidence 667778888888888 599999999998753 447888888877 999999999998 56553
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=92.52 Aligned_cols=101 Identities=11% Similarity=0.125 Sum_probs=81.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~--~d 225 (479)
T 2hqm_A 184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR------------------------------------K--FD 225 (479)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------T--SC
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc------------------------------------c--cC
Confidence 357899999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe--EEEEEccC-cEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNG-KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~--~~v~~~~g-~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.|+ +++++++|++++.++++ ..|++.+| .++.+|.||+|+|. .|+.
T Consensus 226 ~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~--~p~~ 287 (479)
T 2hqm_A 226 ECIQNTITDHYVKEGI--NVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR--KSHL 287 (479)
T ss_dssp HHHHHHHHHHHHHHTC--EEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE--EECC
T ss_pred HHHHHHHHHHHHhCCe--EEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC--CCcc
Confidence 4567777777888888 59999999999875433 77888888 78999999999998 5655
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.7e-08 Score=93.67 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=79.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++++|||+|++|+.+|..|++.|.+|+++|+.+.+... ...
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~ 190 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-------------------------------------YLD 190 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------------TCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-------------------------------------cCC
Confidence 4679999999999999999999999999999987643110 012
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.++..+.+.+ ++.++.+|.||+|+|. .|+.+
T Consensus 191 ~~~~~~l~~~l~~~gv--~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~--~p~~~ 249 (447)
T 1nhp_A 191 KEFTDVLTEEMEANNI--TIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGV--RPNTA 249 (447)
T ss_dssp HHHHHHHHHHHHTTTE--EEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCE--EESCG
T ss_pred HHHHHHHHHHHHhCCC--EEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCC--CCChH
Confidence 5677888888888887 5889999999986533334555 4567999999999998 56544
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=91.91 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=83.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~--~d 222 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP------------------------------------Y--ED 222 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC------------------------------------C--SS
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------c--cC
Confidence 357899999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.|+ +++++++|++++.+++.+.+++.++.++.+|.||+|+|. .|+.
T Consensus 223 ~~~~~~l~~~l~~~GV--~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~--~p~~ 281 (499)
T 1xdi_A 223 ADAALVLEESFAERGV--RLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGS--VPNT 281 (499)
T ss_dssp HHHHHHHHHHHHHTTC--EEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE--EECC
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCC--CcCC
Confidence 4677788888888898 599999999999876667888888888999999999998 5554
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-07 Score=91.34 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=81.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .-.
T Consensus 177 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------~-----~~~ 219 (474)
T 1zmd_A 177 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG--------------------------------V-----GID 219 (474)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC--------------------------------S-----SCC
T ss_pred cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC--------------------------------c-----ccC
Confidence 357899999999999999999999999999998765410 0 012
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEE-----ccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVEL-----SNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~-----~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+++.+..++.++ +++++++|++++.+++. +.+++ .++.++.+|.||+|+|. .|+..
T Consensus 220 ~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~--~p~~~ 285 (474)
T 1zmd_A 220 MEISKNFQRILQKQGF--KFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR--RPFTK 285 (474)
T ss_dssp HHHHHHHHHHHHHTTC--EEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE--EECCT
T ss_pred HHHHHHHHHHHHHCCC--EEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC--CcCCC
Confidence 5677788888888898 59999999999886554 66664 34567999999999998 56543
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=91.20 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=81.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.
T Consensus 170 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~--~~ 211 (464)
T 2a8x_A 170 LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP------------------------------------N--ED 211 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------T--SC
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------c--cC
Confidence 357999999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc-cC--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NG--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~-~g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+++.+..++.++ +++++++|++++.+++...+++. +| .++.+|.||+|+|. .|+..
T Consensus 212 ~~~~~~l~~~l~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~--~p~~~ 274 (464)
T 2a8x_A 212 ADVSKEIEKQFKKLGV--TILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGF--APNVE 274 (464)
T ss_dssp HHHHHHHHHHHHHHTC--EEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCE--EECCS
T ss_pred HHHHHHHHHHHHHcCC--EEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCC--CccCC
Confidence 5667778888888888 59999999999886655667765 55 56899999999998 66553
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6e-08 Score=95.99 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
...+||+|||||++|+++|..|++ |.+|+|+||....+|
T Consensus 6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g 44 (540)
T 1chu_A 6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEG 44 (540)
T ss_dssp SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-
T ss_pred CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCC
Confidence 345899999999999999999999 999999999886654
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=91.27 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=83.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
...+++|||+|+.|+.+|..|.+. |.+|+++++.+.+.. .
T Consensus 186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~------------------------------------~- 228 (490)
T 1fec_A 186 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR------------------------------------G- 228 (490)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST------------------------------------T-
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc------------------------------------c-
Confidence 357999999999999999999999 999999999865410 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
-..++.+.+.+..++.++ +++++++|++++.++ +.+.|++.+|+++.+|.||+|+|. .|+..
T Consensus 229 -~d~~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~--~p~~~ 291 (490)
T 1fec_A 229 -FDSELRKQLTEQLRANGI--NVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR--VPRSQ 291 (490)
T ss_dssp -SCHHHHHHHHHHHHHTTE--EEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE--EESCT
T ss_pred -cCHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC--CcCcc
Confidence 024667788888888888 589999999998864 357888888888999999999998 56553
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=9.1e-08 Score=92.98 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=78.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||++|+.+|..|++.|.+|+++|+.+.+.. . ..
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~--~~ 211 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP------------------------------------T--YD 211 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------T--SC
T ss_pred cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc------------------------------------c--cC
Confidence 357899999999999999999999999999999865410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
.++.+++.+..++.++ +++++++|++++. + .+.++..+| .++.+|.||+|+|. .|+.+.
T Consensus 212 ~~~~~~l~~~l~~~gv--~i~~~~~v~~i~~-~-~v~v~~~~G~~~~i~~D~vv~a~G~--~p~~~~ 272 (458)
T 1lvl_A 212 SELTAPVAESLKKLGI--ALHLGHSVEGYEN-G-CLLANDGKGGQLRLEADRVLVAVGR--RPRTKG 272 (458)
T ss_dssp HHHHHHHHHHHHHHTC--EEETTCEEEEEET-T-EEEEECSSSCCCEECCSCEEECCCE--EECCSS
T ss_pred HHHHHHHHHHHHHCCC--EEEECCEEEEEEe-C-CEEEEECCCceEEEECCEEEECcCC--CcCCCC
Confidence 4566777777888888 5899999999986 3 355553345 57999999999998 666543
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-07 Score=90.55 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=80.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.
T Consensus 173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~--~d 214 (468)
T 2qae_A 173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP------------------------------------T--LD 214 (468)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------T--SC
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc------------------------------------c--CC
Confidence 357899999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHH-HHcCCCcceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYA-KKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+.. ++.++ +++++++|++++.+++.+.+++. +| .++.+|.||+|+|. .|+..
T Consensus 215 ~~~~~~l~~~l~~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~--~p~~~ 279 (468)
T 2qae_A 215 EDVTNALVGALAKNEKM--KFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR--RPFTG 279 (468)
T ss_dssp HHHHHHHHHHHHHHTCC--EEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCE--EECCT
T ss_pred HHHHHHHHHHHhhcCCc--EEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc--ccCCC
Confidence 55677788888 88888 58999999999887656777765 55 56899999999998 55543
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-07 Score=91.11 Aligned_cols=101 Identities=11% Similarity=0.106 Sum_probs=82.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
...+++|||+|+.|+.+|..|.+. |.+|+++++.+.+.. .
T Consensus 190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~------------------------------------~- 232 (495)
T 2wpf_A 190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR------------------------------------G- 232 (495)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT------------------------------------T-
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc------------------------------------c-
Confidence 357899999999999999999999 999999998765410 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
-..++.+.+.+..++.++ +++++++|++++.++ +...|++.+|+++.+|.||+|+|. .|+.
T Consensus 233 -~d~~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~--~p~~ 294 (495)
T 2wpf_A 233 -FDETIREEVTKQLTANGI--EIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR--IPRT 294 (495)
T ss_dssp -SCHHHHHHHHHHHHHTTC--EEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE--EECC
T ss_pred -cCHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC--cccc
Confidence 124567778888888888 599999999998764 357888888888999999999998 5554
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-07 Score=92.67 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=81.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...+
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------~--~~~~ 256 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL------------------------------------I--KDNE 256 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT------------------------------------C--CSHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc------------------------------------c--ccHH
Confidence 7899999999999999999999999999998765410 0 1256
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe----EEEEEccCc-EEEeCEEEEccCCCCCCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI----WEVELSNGK-KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~----~~v~~~~g~-~~~~d~vIvAtG~~s~p~~ 148 (433)
+.+++.+..++.|+ +++++++|++++.++++ +.|++.+|+ ++.+|.||+|+|. .|+.
T Consensus 257 ~~~~l~~~l~~~GV--~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~--~p~~ 318 (523)
T 1mo9_A 257 TRAYVLDRMKEQGM--EIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGE--QPRS 318 (523)
T ss_dssp HHHHHHHHHHHTTC--EEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCC--EECC
T ss_pred HHHHHHHHHHhCCc--EEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCC--ccCC
Confidence 77888888888888 59999999999876444 778888876 7999999999998 5554
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-07 Score=92.69 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
...+||+|||||++|++||..|++.|.+|+|+||....
T Consensus 3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~ 40 (660)
T 2bs2_A 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK 40 (660)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 34589999999999999999999999999999998654
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-07 Score=89.22 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=82.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .-..
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~-~~d~ 189 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP------------------------------------K-YFDK 189 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------T-TCCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc------------------------------------c-cCCH
Confidence 46899999999999999999999999999998765410 0 0125
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|++++..++.+.|.++++ ++.+|.||+|+|. .|+..
T Consensus 190 ~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~--~p~~~ 247 (452)
T 3oc4_A 190 EMVAEVQKSLEKQAV--IFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNL--HPQLA 247 (452)
T ss_dssp HHHHHHHHHHHTTTE--EEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCC--BCCCS
T ss_pred HHHHHHHHHHHHcCC--EEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCC--CCChH
Confidence 677788888888888 5899999999997666667888777 7999999999998 55554
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-07 Score=91.11 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=83.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+++|||+|++|+.+|..|.+. |.+|+++++.+.+.. . ...
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~------------------------------------~-~~~ 201 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP------------------------------------G-FTS 201 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST------------------------------------T-TSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc------------------------------------c-ccC
Confidence 57899999999999999999999 999999998764310 0 012
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.++ +++++++|++++.+++...+.+.+|+++.+|.||+|+|. .|+.
T Consensus 202 ~~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~--~p~~ 260 (472)
T 3iwa_A 202 KSLSQMLRHDLEKNDV--VVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGV--SPNT 260 (472)
T ss_dssp HHHHHHHHHHHHHTTC--EEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCE--EECC
T ss_pred HHHHHHHHHHHHhcCC--EEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCC--CcCH
Confidence 5677888888888888 589999999998867777788888888999999999998 5543
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-07 Score=88.25 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=83.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+-. .....
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~-------------------------------------~~~~~ 194 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA-------------------------------------RVAGE 194 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------------TTSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh-------------------------------------hhcCH
Confidence 57899999999999999999999999999998764310 01136
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+++.+..++.|+ +++++++|+++..+++. ..|++.+|+++.+|.||+|+|. .|+.
T Consensus 195 ~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~--~p~~ 253 (415)
T 3lxd_A 195 ALSEFYQAEHRAHGV--DLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGI--VPCV 253 (415)
T ss_dssp HHHHHHHHHHHHTTC--EEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCC--EESC
T ss_pred HHHHHHHHHHHhCCC--EEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCC--ccCh
Confidence 677888888888898 58999999999886544 4688889989999999999998 5554
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-07 Score=89.62 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=82.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.
T Consensus 197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~--~d 238 (491)
T 3urh_A 197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG------------------------------------G--MD 238 (491)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS------------------------------------S--SC
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc------------------------------------c--CC
Confidence 457899999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---C--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---G--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ .++++++|++++.+++...+++.+ | .++.+|.||+|+|. .|+..
T Consensus 239 ~~~~~~l~~~l~~~gV--~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~--~p~~~ 303 (491)
T 3urh_A 239 GEVAKQLQRMLTKQGI--DFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR--KPSTD 303 (491)
T ss_dssp HHHHHHHHHHHHHTTC--EEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC--EECCT
T ss_pred HHHHHHHHHHHHhCCC--EEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC--ccCCC
Confidence 5667778888888888 589999999999887777777763 4 57899999999998 66654
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-07 Score=89.75 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=80.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ...
T Consensus 173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------------~~d 214 (492)
T 3ic9_A 173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN--------------------------------------LQD 214 (492)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT--------------------------------------CCC
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc--------------------------------------cCC
Confidence 457999999999999999999999999999999875410 012
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEeCEEEEccCCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g--~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
.++.+.+.+..++. + +++++++|+.++.+++...+++. +| .++.+|.||+|+|. .|+...
T Consensus 215 ~~~~~~l~~~l~~~-V--~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~--~p~~~~ 278 (492)
T 3ic9_A 215 EEMKRYAEKTFNEE-F--YFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR--KANVDK 278 (492)
T ss_dssp HHHHHHHHHHHHTT-S--EEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCC--EESCSS
T ss_pred HHHHHHHHHHHhhC-c--EEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC--ccCCCC
Confidence 45666676666654 6 58899999999987667777775 56 57899999999998 666543
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=91.07 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=84.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ .
T Consensus 190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~~--~ 231 (484)
T 3o0h_A 190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR------------------------------------NF--D 231 (484)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------TS--C
T ss_pred cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc------------------------------------cc--C
Confidence 357899999999999999999999999999998764310 01 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+.+++.++ +++++++|++++.+++.+.|++.+|+++.+|.||+|+|. .|+..
T Consensus 232 ~~~~~~l~~~l~~~Gv--~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~--~p~~~ 291 (484)
T 3o0h_A 232 YDLRQLLNDAMVAKGI--SIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGR--VPNTT 291 (484)
T ss_dssp HHHHHHHHHHHHHHTC--EEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE--EECCT
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCC--CcCCC
Confidence 4567777777888888 589999999999877778899999888999999999998 55544
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-07 Score=89.75 Aligned_cols=99 Identities=8% Similarity=0.126 Sum_probs=81.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ..
T Consensus 175 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~-------~~ 215 (467)
T 1zk7_A 175 IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF--------------------------------R-------ED 215 (467)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--------------------------------T-------SC
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC--------------------------------C-------CC
Confidence 35789999999999999999999999999999876430 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.|+ +++++++|++++.+++.+.+.+++ .++.+|.||+|+|. .|+.
T Consensus 216 ~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~~~v~~~~-~~i~aD~Vv~a~G~--~p~~ 273 (467)
T 1zk7_A 216 PAIGEAVTAAFRAEGI--EVLEHTQASQVAHMDGEFVLTTTH-GELRADKLLVATGR--TPNT 273 (467)
T ss_dssp HHHHHHHHHHHHHTTC--EEETTCCEEEEEEETTEEEEEETT-EEEEESEEEECSCE--EESC
T ss_pred HHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeCCEEEEEECC-cEEEcCEEEECCCC--CcCC
Confidence 5677888888888888 589999999999877778888764 57999999999998 5554
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=91.30 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=82.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ..-..
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~-------------------------------------~~~~~ 185 (410)
T 3ef6_A 143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV-------------------------------------RVLGR 185 (410)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSH-------------------------------------HHHCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccch-------------------------------------hhcCH
Confidence 57899999999999999999999999999998764310 00025
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ +++++++|.+++.++....|++.+|+++.+|.||+|+|. .|+.
T Consensus 186 ~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~--~p~~ 243 (410)
T 3ef6_A 186 RIGAWLRGLLTELGV--QVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGA--EPAD 243 (410)
T ss_dssp HHHHHHHHHHHHHTC--EEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCE--EECC
T ss_pred HHHHHHHHHHHHCCC--EEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCC--eecH
Confidence 667788888888888 589999999998766556788889989999999999998 5553
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-08 Score=92.90 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=41.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC-CCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME-SDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~-~~~Gg~~~~~ 49 (433)
...+||+|||||++||++|..|++.|++|+|+|++ +.+||.|...
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~ 87 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTF 87 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEE
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeee
Confidence 35689999999999999999999999999999999 9999987643
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-07 Score=88.37 Aligned_cols=97 Identities=23% Similarity=0.364 Sum_probs=79.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .-..
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~-~~~~ 187 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS------------------------------------R-AAPA 187 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------T-TSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc------------------------------------c-ccCH
Confidence 57899999999999999999999999999998765410 0 0125
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ +++++++|++++ ++ .|++.+|.++.+|.||+|+|. .|+.
T Consensus 188 ~~~~~l~~~l~~~GV--~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~--~p~~ 241 (408)
T 2gqw_A 188 TLADFVARYHAAQGV--DLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIGV--LAND 241 (408)
T ss_dssp HHHHHHHHHHHHTTC--EEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSCE--EECC
T ss_pred HHHHHHHHHHHHcCc--EEEeCCEEEEEE--CC--EEEECCCCEEEcCEEEECcCC--CccH
Confidence 567788888888898 589999999998 34 677888888999999999998 5543
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-07 Score=87.05 Aligned_cols=101 Identities=15% Similarity=0.255 Sum_probs=82.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .....
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------------------~~~~~ 184 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA-------------------------------------RVVTP 184 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------------TTSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh-------------------------------------hccCH
Confidence 46899999999999999999999999999998764310 01135
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ +++++++|++++.+++. ..|++.+|+++.+|.||+|+|. .|+.
T Consensus 185 ~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~--~p~~ 243 (404)
T 3fg2_P 185 EISSYFHDRHSGAGI--RMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV--IPNV 243 (404)
T ss_dssp HHHHHHHHHHHHTTC--EEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE--EECC
T ss_pred HHHHHHHHHHHhCCc--EEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC--ccCH
Confidence 677888888888898 58999999999887554 4588889989999999999998 5543
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=91.27 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=81.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ...
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--------------------------------------~~~ 217 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP--------------------------------------TMD 217 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST--------------------------------------TSC
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc--------------------------------------ccc
Confidence 357899999999999999999999999999998765410 012
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---cC--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NG--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+++.+..++.++ +++++++|.+++.+++...+++. +| .++.+|.||+|+|. .|+..
T Consensus 218 ~~~~~~l~~~l~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~--~p~~~ 282 (470)
T 1dxl_A 218 AEIRKQFQRSLEKQGM--KFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR--TPFTS 282 (470)
T ss_dssp HHHHHHHHHHHHHSSC--CEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCE--EECCT
T ss_pred HHHHHHHHHHHHHcCC--EEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCC--CcCCC
Confidence 5677888888888888 59999999999876555666664 34 57899999999998 55543
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.4e-07 Score=88.65 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=82.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ...
T Consensus 179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------------~~~ 220 (476)
T 3lad_A 179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP--------------------------------------AVD 220 (476)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST--------------------------------------TSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc--------------------------------------ccC
Confidence 457899999999999999999999999999998765410 012
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC---cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g---~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.+++...+++.++ ..+.+|.||+|+|. .|+..
T Consensus 221 ~~~~~~l~~~l~~~Gv--~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~--~p~~~ 283 (476)
T 3lad_A 221 EQVAKEAQKILTKQGL--KILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR--RPVTT 283 (476)
T ss_dssp HHHHHHHHHHHHHTTE--EEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE--EECCT
T ss_pred HHHHHHHHHHHHhCCC--EEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC--cccCC
Confidence 5677778888888888 5889999999998777777877654 56899999999998 66554
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-07 Score=91.50 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=82.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------------~~~~ 192 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT--------------------------------------PVDR 192 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT--------------------------------------TSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch--------------------------------------hcCH
Confidence 46899999999999999999999999999998764310 0125
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-------------------CCeEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-------------------EDIWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-------------------~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
++.+.+.+..++.++ +++++++|.+++.+ ++...+.+.+|+++.+|.||+|+|. .|+
T Consensus 193 ~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~ 268 (565)
T 3ntd_A 193 EMAGFAHQAIRDQGV--DLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV--RPE 268 (565)
T ss_dssp HHHHHHHHHHHHTTC--EEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE--EEC
T ss_pred HHHHHHHHHHHHCCC--EEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC--ccc
Confidence 667778888888888 58999999999873 5677888888888999999999998 554
Q ss_pred C
Q psy2398 148 Y 148 (433)
Q Consensus 148 ~ 148 (433)
.
T Consensus 269 ~ 269 (565)
T 3ntd_A 269 T 269 (565)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.8e-07 Score=88.44 Aligned_cols=102 Identities=22% Similarity=0.251 Sum_probs=80.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . .-..
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~-~~~~ 191 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY------------------------------------K-YFDK 191 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT------------------------------------T-TSCH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh------------------------------------h-hhhh
Confidence 47899999999999999999999999999998764310 0 0125
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|++++.+++.......++.++.+|.||+|+|. .|+.+
T Consensus 192 ~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~--~p~~~ 250 (452)
T 2cdu_A 192 EFTDILAKDYEAHGV--NLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGF--RPNTE 250 (452)
T ss_dssp HHHHHHHHHHHHTTC--EEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCE--EECCG
T ss_pred hHHHHHHHHHHHCCC--EEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCC--CCCHH
Confidence 677788888888898 599999999998756655433346778999999999998 55543
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-07 Score=88.06 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=80.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------~-~~~~ 191 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE------------------------------------R-VTAP 191 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT------------------------------------T-TSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc------------------------------------c-hhhH
Confidence 57899999999999999999999999999998764310 0 0124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEE--eCCe-EEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQ--YEDI-WEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~--~~~~-~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
++.+.+.+..++.|+ +++++++|++++. +++. ..|++.+|.++.+|.||+|+|. .|+
T Consensus 192 ~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~--~p~ 251 (431)
T 1q1r_A 192 PVSAFYEHLHREAGV--DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL--IPN 251 (431)
T ss_dssp HHHHHHHHHHHHHTC--EEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE--EEC
T ss_pred HHHHHHHHHHHhCCe--EEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC--CcC
Confidence 567777888888888 5899999999987 4333 4788888888999999999998 554
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-07 Score=90.93 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEE---ccCc--EEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVEL---SNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~---~~g~--~~~~d~vIvAtG~~s~ 145 (433)
...+...+.+.+.+.++ +++.++.|+.+..+++.. -|.. .+|+ .+.++.||+|||.++.
T Consensus 154 G~~l~~~L~~~~~~~gv--~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 218 (621)
T 2h88_A 154 GHSLLHTLYGRSLRYDT--SYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR 218 (621)
T ss_dssp HHHHHHHHHHHHTTSCC--EEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHHHHHhCCC--EEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence 34677777777777777 689999999998765532 2332 3554 5889999999999764
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-08 Score=98.37 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=38.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCCCCccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDLGGVWN 47 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~Gg~~~ 47 (433)
+..+||+|||||++||+||..|+++ |.+|+|+|+++.+||...
T Consensus 8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS 51 (513)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence 3457999999999999999999874 999999999999999764
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=96.29 Aligned_cols=39 Identities=33% Similarity=0.598 Sum_probs=36.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
.+||+|||||++|+++|..|++.|++|+|+|+.+.+||.
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGR 374 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceece
Confidence 479999999999999999999999999999999888873
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-07 Score=89.81 Aligned_cols=102 Identities=10% Similarity=0.162 Sum_probs=78.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . .-.
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~-~~~ 235 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA------------------------------------G-YYD 235 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------------T-TSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh------------------------------------h-HHH
Confidence 457899999999999999999999999999998765310 0 012
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.++....+.+ ++.++.+|.||+|+|. .|+.+
T Consensus 236 ~~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~--~p~~~ 294 (490)
T 2bc0_A 236 RDLTDLMAKNMEEHGI--QLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGF--RPNTT 294 (490)
T ss_dssp HHHHHHHHHHHHTTTC--EEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCE--EECCG
T ss_pred HHHHHHHHHHHHhCCe--EEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCC--CcChH
Confidence 5677788888888888 5999999999986332223555 5678999999999998 56543
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-07 Score=90.33 Aligned_cols=100 Identities=23% Similarity=0.324 Sum_probs=78.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|++|+.+|..|.+.|.+|+++++.+.+.. .-.
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------------~~~ 226 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT--------------------------------------IYD 226 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS--------------------------------------SSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh--------------------------------------cCC
Confidence 457999999999999999999999999999998764411 012
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+.+++.++ +++++++|++++.+++.+.+.+++ .++.+|.||+|+|. .|+.
T Consensus 227 ~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~v~~v~~~~-~~i~~D~vi~a~G~--~p~~ 284 (480)
T 3cgb_A 227 GDMAEYIYKEADKHHI--EILTNENVKAFKGNERVEAVETDK-GTYKADLVLVSVGV--KPNT 284 (480)
T ss_dssp HHHHHHHHHHHHHTTC--EEECSCCEEEEEESSBEEEEEETT-EEEECSEEEECSCE--EESC
T ss_pred HHHHHHHHHHHHHcCc--EEEcCCEEEEEEcCCcEEEEEECC-CEEEcCEEEECcCC--CcCh
Confidence 5667788888888888 588999999998754444566654 47999999999998 5543
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=7.1e-07 Score=86.87 Aligned_cols=164 Identities=17% Similarity=0.198 Sum_probs=87.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCC---------
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYP--------- 74 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 74 (433)
..++|+|||+|.+|+.+|..|.+. +.+|+++++.+.+- .....+ +. .....+.....|...+
T Consensus 226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~--p~~~~~----~~-~~~~~p~~~~~~~~l~~~~~~~~~~ 298 (463)
T 3s5w_A 226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALK--PADDSP----FV-NEVFAPKFTDLIYSREHAERERLLR 298 (463)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCC--BCCCCH----HH-HGGGSHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCc--CccCCc----cc-hhccChhHHHHHhcCCHHHHHHHHH
Confidence 357899999999999999999998 88999999987530 000000 00 0000000000000000
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHH----H-HcCCCcceEeCcEEEEEEEeCCeEEEEEc---cCcE--EEeCEEEEccCC
Q psy2398 75 --MPDNYPVYPNHSMMLDYLRSYA----K-KFDVYNHSIFNTEVINLEQYEDIWEVELS---NGKK--KKYDFIAVCNGA 142 (433)
Q Consensus 75 --~~~~~~~~~~~~~~~~~l~~~~----~-~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g~~--~~~d~vIvAtG~ 142 (433)
....+ .......+.+...... . ..++ +++++++|+.++.+++.|.|++. +|+. +.+|.||+|||.
T Consensus 299 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~v--~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~ 375 (463)
T 3s5w_A 299 EYHNTNY-SVVDTDLIERIYGVFYRQKVSGIPRH--AFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGY 375 (463)
T ss_dssp HTGGGTS-SCBCHHHHHHHHHHHHHHHHHCCCCS--EEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCE
T ss_pred HhhccCC-CcCCHHHHHHHHHHHHHHHhcCCCCe--EEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCC
Confidence 00000 0011111111111111 1 1355 58889999999988888999887 5553 899999999998
Q ss_pred CCCCC--CCCCCC--CCCCceeccCCCCCCCC-CCCCeEEEEcC
Q psy2398 143 QRVAR--YPNYSG--YFSGEILHSMDYKSPDQ-IRNKRVLVVGA 181 (433)
Q Consensus 143 ~s~p~--~p~i~g--~~~g~~~~~~~~~~~~~-~~~~~v~VvG~ 181 (433)
.|+ .+-+.+ ...|.+.....++.... ....+|.++|.
T Consensus 376 --~p~~~~~~l~~l~~~~g~i~v~~~~~~~~~~~~~~~Ifa~G~ 417 (463)
T 3s5w_A 376 --ERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQGF 417 (463)
T ss_dssp --ECCC-CTTTGGGGGGBC--CCCTTSBCCBCTTBCSEEEESSC
T ss_pred --CCCCccchhHHHHHHhCCcccCcccccccCCCCCCeEEEcCC
Confidence 555 333333 11144444444443221 12456877775
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=98.53 E-value=9.5e-07 Score=86.32 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=80.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ...
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------------~~d 227 (478)
T 3dk9_A 186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR--------------------------------------SFD 227 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT--------------------------------------TSC
T ss_pred cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc--------------------------------------ccC
Confidence 357899999999999999999999999999998765410 012
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC--eEEEEEcc---C----cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSN---G----KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~--~~~v~~~~---g----~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+++.+..++.++ +++++++|++++.+++ ...+.+.+ + .++.+|.||+|+|. .|+..
T Consensus 228 ~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~--~p~~~ 296 (478)
T 3dk9_A 228 SMISTNCTEELENAGV--EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR--VPNTK 296 (478)
T ss_dssp HHHHHHHHHHHHHTTC--EEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE--EESCT
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc--ccCCC
Confidence 5667788888888888 5899999999987643 36677764 2 56899999999998 66554
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.6e-07 Score=86.62 Aligned_cols=101 Identities=10% Similarity=0.084 Sum_probs=81.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.
T Consensus 169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~------------------------------------~--~~ 210 (463)
T 4dna_A 169 LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS------------------------------------R--FD 210 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------T--SC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------c--cC
Confidence 357899999999999999999999999999998764310 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEE-EccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVE-LSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~-~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+.+++.++ +++++++|.+++.++ +...|+ +.+|+ +.+|.||+|+|. .|+..
T Consensus 211 ~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~--~p~~~ 271 (463)
T 4dna_A 211 QDMRRGLHAAMEEKGI--RILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGR--MPNTN 271 (463)
T ss_dssp HHHHHHHHHHHHHTTC--EEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCE--EESCT
T ss_pred HHHHHHHHHHHHHCCC--EEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCc--ccCCC
Confidence 5667788888888888 589999999998864 336788 78887 999999999998 55544
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-06 Score=86.36 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCcEEEECCChHHHHHHHHHHh----cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE----GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~----~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
..+|+|||||+.|+.+|..|.+ .|.+|+++++.+...+ ..
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~------------------------------------~~ 223 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG------------------------------------KI 223 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT------------------------------------TT
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc------------------------------------cc
Confidence 4689999999999999999987 4789999997653200 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
. ...+.+.+.+..++.++ +++++++|+.++.+++...|++.+|+++.+|.||+|+|. .|+.
T Consensus 224 l-~~~~~~~~~~~l~~~GV--~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~--~pn~ 284 (493)
T 1m6i_A 224 L-PEYLSNWTMEKVRREGV--KVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL--EPNV 284 (493)
T ss_dssp S-CHHHHHHHHHHHHTTTC--EEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE--EECC
T ss_pred C-CHHHHHHHHHHHHhcCC--EEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCC--CccH
Confidence 1 14567777888888888 589999999998777777888889888999999999998 5554
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-07 Score=90.43 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=41.6
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCCCCcccCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~Gg~~~~~ 49 (433)
|..+..++||+|||||++||++|..|++. |.+|+|+|+++.+||.+...
T Consensus 1 m~~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~ 50 (399)
T 1v0j_A 1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE 50 (399)
T ss_dssp ---CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEE
T ss_pred CCcccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeec
Confidence 44334568999999999999999999999 99999999999999987653
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=4e-07 Score=85.65 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=75.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. -..+
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~~~ 184 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG---------------------------------------LDEE 184 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT---------------------------------------CCHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc---------------------------------------CCHH
Confidence 6899999999999999999999999999998765410 1256
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
+.+++.+..++.++ +++++++|++++ .. .+++.+|+ +.+|.||+|+|. .|+.
T Consensus 185 ~~~~l~~~l~~~gV--~i~~~~~v~~i~--~~--~v~~~~g~-i~~D~vi~a~G~--~p~~ 236 (367)
T 1xhc_A 185 LSNMIKDMLEETGV--KFFLNSELLEAN--EE--GVLTNSGF-IEGKVKICAIGI--VPNV 236 (367)
T ss_dssp HHHHHHHHHHHTTE--EEECSCCEEEEC--SS--EEEETTEE-EECSCEEEECCE--EECC
T ss_pred HHHHHHHHHHHCCC--EEEcCCEEEEEE--ee--EEEECCCE-EEcCEEEECcCC--CcCH
Confidence 77888888888888 588899999887 23 46677777 999999999998 5554
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-07 Score=89.61 Aligned_cols=48 Identities=31% Similarity=0.607 Sum_probs=41.8
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCcccCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~~~~~ 49 (433)
|+ ....+||+|||||++||+||..|++.| .+|+|+|+++.+||.+...
T Consensus 1 M~-~~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~ 49 (424)
T 2b9w_A 1 MS-ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSP 49 (424)
T ss_dssp -C-CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCC
T ss_pred CC-CCCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCccccc
Confidence 54 245689999999999999999999999 8999999999999977654
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.3e-06 Score=83.62 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=78.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+++|||+|+.|+.+|..|++.|.+|+++++...+ . .+ .
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l-----~--------------------------------~~--d 226 (483)
T 3dgh_A 186 EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVL-----R--------------------------------GF--D 226 (483)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSS-----T--------------------------------TS--C
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC-----c--------------------------------cc--C
Confidence 3568999999999999999999999999999974211 0 01 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCc-----EEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGK-----KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~-----~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.++ +++++++|.+++.+ ++...|++.++. ++.+|.||+|+|. .|+.
T Consensus 227 ~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~--~p~~ 291 (483)
T 3dgh_A 227 QQMAELVAASMEERGI--PFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR--KGLV 291 (483)
T ss_dssp HHHHHHHHHHHHHTTC--CEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE--EECC
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc--ccCc
Confidence 5677788888888888 59999999999875 345667766543 6899999999998 5554
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-07 Score=90.62 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=40.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
..+||+|||||++||++|..|++.|.+|+|+|+++.+||.+..
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence 4589999999999999999999999999999999999998765
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=88.26 Aligned_cols=98 Identities=26% Similarity=0.345 Sum_probs=79.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+.. . ...
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~--~~~ 228 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP------------------------------------P--IDY 228 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------T--SCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc------------------------------------c--CCH
Confidence 47899999999999999999999999999998764310 0 125
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ +++++++|++++.+++ .|++.+++++.+|.||+|+|. .|+.
T Consensus 229 ~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~--~v~~~~g~~i~~D~Vi~a~G~--~p~~ 284 (588)
T 3ics_A 229 EMAAYVHEHMKNHDV--ELVFEDGVDALEENGA--VVRLKSGSVIQTDMLILAIGV--QPES 284 (588)
T ss_dssp HHHHHHHHHHHHTTC--EEECSCCEEEEEGGGT--EEEETTSCEEECSEEEECSCE--EECC
T ss_pred HHHHHHHHHHHHcCC--EEEECCeEEEEecCCC--EEEECCCCEEEcCEEEEccCC--CCCh
Confidence 667778888888888 5889999999976544 467778888999999999998 5543
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=80.80 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=75.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|.+|+.+|..|.+.|.+|+++++.+.+ ....
T Consensus 152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~----------------------------------------~~~~ 191 (335)
T 2zbw_A 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF----------------------------------------RAHE 191 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC----------------------------------------CSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc----------------------------------------CccH
Confidence 468999999999999999999999999999987533 0113
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---cC--cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
...+.+.+..++.++ +++++++|.+++.+++...|++. +| .++.+|.||+|+|. .|+.
T Consensus 192 ~~~~~l~~~l~~~gv--~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~ 254 (335)
T 2zbw_A 192 ASVKELMKAHEEGRL--EVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGY--ITKL 254 (335)
T ss_dssp HHHHHHHHHHHTTSS--EEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCE--EEEC
T ss_pred HHHHHHHhccccCCe--EEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecC--CCCc
Confidence 445666666677787 58889999999885443355554 55 56899999999998 5543
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.9e-07 Score=86.15 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+... + ..
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~------------------------------------~--d~ 188 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL------------------------------------M--DA 188 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT------------------------------------S--CG
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc------------------------------------c--cc
Confidence 468999999999999999999999999999988754110 0 12
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ .++++++|+.++. . .+++.+++++.+|.|++|+|. .|+.
T Consensus 189 ~~~~~~~~~l~~~gV--~i~~~~~v~~~~~--~--~v~~~~g~~~~~D~vl~a~G~--~Pn~ 242 (437)
T 4eqs_A 189 DMNQPILDELDKREI--PYRLNEEINAING--N--EITFKSGKVEHYDMIIEGVGT--HPNS 242 (437)
T ss_dssp GGGHHHHHHHHHTTC--CEEESCCEEEEET--T--EEEETTSCEEECSEEEECCCE--EESC
T ss_pred hhHHHHHHHhhccce--EEEeccEEEEecC--C--eeeecCCeEEeeeeEEEEece--ecCc
Confidence 345667777778888 5899999988753 3 477788889999999999998 5653
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=81.91 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=76.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+.. .. + .+...-..
T Consensus 166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~---~~--------------------~--------d~~~~~~~ 214 (369)
T 3d1c_A 166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLND---PD--------------------A--------DPSVRLSP 214 (369)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----------------------------------------CTTSCCH
T ss_pred CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCC---CC--------------------C--------CCCccCCH
Confidence 35899999999999999999999999999998764310 00 0 00111124
Q ss_pred HHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEE-eCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKK-YDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~-~d~vIvAtG~~s~p~~ 148 (433)
.+.+.+.+..++.+ + .++.+++|.+++.+++.+.+++.+|+.+. +|.||+|||. .|+.
T Consensus 215 ~~~~~l~~~l~~~g~v--~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~--~~~~ 274 (369)
T 3d1c_A 215 YTRQRLGNVIKQGARI--EMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGF--DATK 274 (369)
T ss_dssp HHHHHHHHHHHTTCCE--EEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCB--CGGG
T ss_pred HHHHHHHHHHhhCCcE--EEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeecc--CCcc
Confidence 45566666666665 7 58889999999877777888888887665 5999999998 5554
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=79.35 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=74.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+ ....
T Consensus 145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~----------------------------------------~~~~ 184 (320)
T 1trb_A 145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF----------------------------------------RAEK 184 (320)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC----------------------------------------CCCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc----------------------------------------ccCH
Confidence 468999999999999999999999999999987532 0123
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEcc----C--cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSN----G--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~----g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
.+.+.+.+.+++.++ +++++++|++++.++ ....|++.+ + .++.+|.||+|+|. .|+.
T Consensus 185 ~~~~~l~~~l~~~gv--~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~--~p~~ 249 (320)
T 1trb_A 185 ILIKRLMDKVENGNI--ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH--SPNT 249 (320)
T ss_dssp HHHHHHHHHHHTSSE--EEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCE--EESC
T ss_pred HHHHHHHHhcccCCe--EEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCC--CCCh
Confidence 455566666677787 588899999998764 333355543 3 46899999999998 5543
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=83.88 Aligned_cols=100 Identities=20% Similarity=0.265 Sum_probs=75.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+. .
T Consensus 171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~~~-d 213 (466)
T 3l8k_A 171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI------------------------------------TLE-D 213 (466)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------TSC-C
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCC------------------------------------CCC-C
Confidence 357899999999999999999999999999998765410 000 1
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEc--cCc--EEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELS--NGK--KKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~--~g~--~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..+ + +++++++|++++.++ +...+++. +|+ ++.+|.||+|+|. .|+..
T Consensus 214 ~~~~~~l~~~l~---v--~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~--~p~~~ 275 (466)
T 3l8k_A 214 QDIVNTLLSILK---L--NIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGR--RPVIP 275 (466)
T ss_dssp HHHHHHHHHHHC---C--CEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCE--EECCC
T ss_pred HHHHHHHHhcCE---E--EEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCC--Ccccc
Confidence 344444444333 4 588899999998876 77888887 555 7899999999998 66654
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-08 Score=99.60 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhc------CCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG------NINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~------g~~v~v~e~~~~ 41 (433)
.+||+|||||++||+||+.|++. |.+|+|+||...
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence 47999999999999999999997 999999999764
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.4e-06 Score=81.77 Aligned_cols=101 Identities=11% Similarity=0.126 Sum_probs=78.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+++|||+|+.|+.+|..|++.|.+|+++++...+ . .+ .
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l-----~--------------------------------~~--d 224 (488)
T 3dgz_A 184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL-----R--------------------------------GF--D 224 (488)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS-----T--------------------------------TS--C
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc-----c--------------------------------cC--C
Confidence 3568999999999999999999999999999975311 0 01 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEcc---Cc--EEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN---GK--KKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~---g~--~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ ++++++.+..++.. ++...+++.+ ++ ++.+|.||+|+|. .|+..
T Consensus 225 ~~~~~~l~~~l~~~gv--~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~--~p~~~ 290 (488)
T 3dgz_A 225 QQMSSLVTEHMESHGT--QFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR--VPETR 290 (488)
T ss_dssp HHHHHHHHHHHHHTTC--EEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE--EESCG
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC--CcccC
Confidence 5677888888888888 58999999999875 4556666654 44 4789999999998 56553
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.2e-06 Score=82.46 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHH---h-cCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELS---E-GNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~---~-~g~~v~v~e~~~~ 41 (433)
.+||+|||||++||+||..|+ + .|.+|+|+||...
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 379999999999999999999 6 8999999999874
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-07 Score=91.29 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=38.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~~~ 47 (433)
..+||+|||||++||+||..|++.| .+|+|+|+++.+||.+.
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~ 49 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQ 49 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCcee
Confidence 3479999999999999999999999 99999999999999753
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.7e-07 Score=85.49 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..+||+|||||++|+++|..|++.|.+|+|+|+++.+||.|...
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~ 71 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDC 71 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCE
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCcccee
Confidence 45799999999999999999999999999999999999988754
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-06 Score=83.50 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=74.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .-..
T Consensus 148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~-~~~~ 190 (449)
T 3kd9_A 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR------------------------------------R-SFDK 190 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------------T-TSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch------------------------------------h-hcCH
Confidence 46899999999999999999999999999998765410 0 0124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++. + ++++++.|..++.++ .......++.++.+|.||+|+|. .|+.
T Consensus 191 ~~~~~l~~~l~~~-v--~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~--~p~~ 246 (449)
T 3kd9_A 191 EVTDILEEKLKKH-V--NLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGI--KPNI 246 (449)
T ss_dssp HHHHHHHHHHTTT-S--EEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCE--EECC
T ss_pred HHHHHHHHHHHhC-c--EEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCC--ccCH
Confidence 5666777666665 6 588899999997644 33223446678999999999998 5543
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=79.25 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+. ...
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~----------------------------------------~~~ 202 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ----------------------------------------GHG 202 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS----------------------------------------SCS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC----------------------------------------CCH
Confidence 4689999999999999999999999999999875430 001
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEE--ccC--cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVEL--SNG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~--~~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
.+.+.+.+..++.++ .++++++|.+++.+++.. .|++ .+| ..+.+|.||+|+|. .|+.
T Consensus 203 ~~~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~--~p~~ 265 (360)
T 3ab1_A 203 KTAHEVERARANGTI--DVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGF--KSNL 265 (360)
T ss_dssp HHHHSSHHHHHHTSE--EEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCB--CCSC
T ss_pred HHHHHHHHHhhcCce--EEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCC--CCCH
Confidence 233445555566677 588899999998875532 3444 366 46899999999997 5543
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=7e-07 Score=87.27 Aligned_cols=44 Identities=39% Similarity=0.603 Sum_probs=40.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCcccC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGVWNS 48 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~~~~ 48 (433)
...+||+|||||++||++|..|++.| .+|+|+|+++.+||.|..
T Consensus 7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence 45689999999999999999999998 799999999999998875
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.7e-07 Score=87.85 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=38.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
..+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 45 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW 45 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 457999999999999999999999999999999999998764
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=86.14 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
+..+||+|||||++||+||..|++.|++|+|+|+.+.+||.+
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 50 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV 50 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCce
Confidence 345799999999999999999999999999999999999964
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-05 Score=77.78 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=75.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+.+++|||+|+.|+.+|..|++.|.+|+++++. .+. . .+ .
T Consensus 209 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l----~--------------------------------~~--d 249 (519)
T 3qfa_A 209 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL----R--------------------------------GF--D 249 (519)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS----T--------------------------------TS--C
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccc----c--------------------------------cC--C
Confidence 3467999999999999999999999999999974 220 0 01 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC----CeEEEEE--ccC-c--EEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE----DIWEVEL--SNG-K--KKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~----~~~~v~~--~~g-~--~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ ++++++++..+.... +...++. .++ + .+.+|.||+|+|. .|+..
T Consensus 250 ~~~~~~~~~~l~~~GV--~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~--~p~~~ 318 (519)
T 3qfa_A 250 QDMANKIGEHMEEHGI--KFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR--DACTR 318 (519)
T ss_dssp HHHHHHHHHHHHHTTC--EEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCE--EESCS
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCC--cccCC
Confidence 5677778888888888 588898888887642 4455543 344 2 4689999999998 66554
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.5e-07 Score=86.29 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=38.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~ 48 (433)
+||+|||||++||++|++|++.|. +|+|+|+++.+||....
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t 45 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRS 45 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCE
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEE
Confidence 699999999999999999999999 99999999999987643
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-06 Score=85.97 Aligned_cols=42 Identities=24% Similarity=0.499 Sum_probs=37.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
..+||+|||||++||++|..|++.|++|+|+|+++.+||...
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~ 56 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVG 56 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceee
Confidence 457999999999999999999999999999999999988543
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=85.91 Aligned_cols=43 Identities=26% Similarity=0.470 Sum_probs=39.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
.++||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 54 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRS 54 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 3579999999999999999999999999999999999997654
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=5e-06 Score=81.44 Aligned_cols=95 Identities=18% Similarity=0.343 Sum_probs=71.9
Q ss_pred CcEEEECCChHHHHHHHHHHhc--------------CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--------------NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDY 73 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--------------g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (433)
..++|||||+.|+.+|..|.+. +.+|+++|..+.+-
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il------------------------------ 267 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL------------------------------ 267 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS------------------------------
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc------------------------------
Confidence 3699999999999999988753 36899999887551
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC----cEEEeCEEEEccCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG----KKKKYDFIAVCNGA 142 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g----~~~~~d~vIvAtG~ 142 (433)
+.+ ..++.+++.+..++.|+ +++++++|++++.+.........+| +++.||.||.|+|.
T Consensus 268 ------~~~--~~~~~~~~~~~L~~~GV--~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 268 ------NMF--EKKLSSYAQSHLENTSI--KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 330 (502)
T ss_dssp ------TTS--CHHHHHHHHHHHHHTTC--EEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred ------cCC--CHHHHHHHHHHHHhcce--eeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCC
Confidence 011 26788889999999999 5999999999875322223333444 35899999999998
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-06 Score=82.07 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=38.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence 69999999999999999999999999999999999998754
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.9e-05 Score=78.04 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=74.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||+.|+.+|..|++.|.+|+++++. .+. . .+ .
T Consensus 285 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l----~--------------------------------~~--d 325 (598)
T 2x8g_A 285 FPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILL----R--------------------------------GF--D 325 (598)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS----T--------------------------------TS--C
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCc----C--------------------------------cC--C
Confidence 3468999999999999999999999999999986 220 0 01 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe------C---CeEEEE--EccCcEEE--eCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY------E---DIWEVE--LSNGKKKK--YDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~------~---~~~~v~--~~~g~~~~--~d~vIvAtG~~s~p~~ 148 (433)
.++.+++.+..++.++ .+++++.+..+... + +...++ ..+|+.+. +|.||+|+|. .|+.
T Consensus 326 ~~~~~~~~~~l~~~gv--~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~--~p~~ 397 (598)
T 2x8g_A 326 QQMAEKVGDYMENHGV--KFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR--EPQL 397 (598)
T ss_dssp HHHHHHHHHHHHHTTC--EEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCE--EECG
T ss_pred HHHHHHHHHHHHhCCC--EEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCC--cccc
Confidence 4566777777778888 58889888888642 1 445454 34665554 9999999998 5554
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.16 E-value=4e-06 Score=75.82 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhcc-CCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~-~~~V~~~~r~~~ 207 (433)
..|+|||+|.+|+.+|..|++. +.+|+++.+.+.
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~ 74 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 74 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence 3799999999999999999997 999999998763
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-06 Score=85.08 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
..++||+|||||++||++|..|++.|.+|+|+|+++.+||.+.
T Consensus 31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR 73 (498)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence 3468999999999999999999999999999999999999753
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=73.82 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=68.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+. . ..
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------------------------------~-~~ 191 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR---------------------------------------A-NK 191 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC---------------------------------------S-CH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC---------------------------------------c-ch
Confidence 3689999999999999999999999999999875330 0 01
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---cCc--EEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGK--KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g~--~~~~d~vIvAtG~~s~p~~ 148 (433)
. +.+.+.+..++ +++++++|+++..++....|.+. +|+ ++.+|.||+|+|. .|+.
T Consensus 192 ~---~~~~l~~~~gv--~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~ 251 (325)
T 2q7v_A 192 V---AQARAFANPKM--KFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGH--VPNT 251 (325)
T ss_dssp H---HHHHHHTCTTE--EEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCE--EESC
T ss_pred H---HHHHHHhcCCc--eEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCC--CCCh
Confidence 1 12222233466 58889999999875443345554 454 6899999999998 5554
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.8e-06 Score=75.32 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=69.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+. ...
T Consensus 173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~----------------------------------------~~~ 212 (338)
T 3itj_A 173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLR----------------------------------------AST 212 (338)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC----------------------------------------SCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccC----------------------------------------CCH
Confidence 4689999999999999999999999999999876430 011
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEcc-----CcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSN-----GKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~-----g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.+.+.+.+..++ .++++++|.+++.+++ ...|++.+ +.++.+|.||+|+|. .|+.
T Consensus 213 ---~~~~~l~~~~gv--~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~ 273 (338)
T 3itj_A 213 ---IMQKRAEKNEKI--EILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGH--TPAT 273 (338)
T ss_dssp ---HHHHHHHHCTTE--EEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCE--EECC
T ss_pred ---HHHHHHHhcCCe--EEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCC--CCCh
Confidence 122222333476 5888999999988654 33366554 356899999999998 5543
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-06 Score=81.73 Aligned_cols=41 Identities=27% Similarity=0.457 Sum_probs=38.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.|..
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 44 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 44 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence 79999999999999999999999999999999999998764
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=8.9e-06 Score=74.46 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=68.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+. ...
T Consensus 143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------------------------------------~~~ 182 (311)
T 2q0l_A 143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR----------------------------------------CAP 182 (311)
T ss_dssp TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC----------------------------------------SCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC----------------------------------------CCH
Confidence 4789999999999999999999999999999875330 001
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEEc---cCc--EEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELS---NGK--KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~~---~g~--~~~~d~vIvAtG~~s~p~~ 148 (433)
.+ .+.+.++.++ ++++++++.+++.+++.. .+.+. +|+ ++.+|.||+|+|. .|+.
T Consensus 183 ~~---~~~l~~~~gv--~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~ 243 (311)
T 2q0l_A 183 IT---LEHAKNNDKI--EFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGY--DVNN 243 (311)
T ss_dssp HH---HHHHHTCTTE--EEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCE--EECC
T ss_pred HH---HHHHhhCCCe--EEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecC--ccCh
Confidence 11 2222223466 578899999998764432 45554 454 6899999999998 5553
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=73.76 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. ...
T Consensus 154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~----------------------------------------~~~ 193 (323)
T 3f8d_A 154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK----------------------------------------AQP 193 (323)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC----------------------------------------SCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC----------------------------------------cCH
Confidence 4689999999999999999999999999999876430 011
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---Cc--EEEeCEEEEccCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK--KKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g~--~~~~d~vIvAtG~~s~p~ 147 (433)
++++...+..++ +++++++|.+++.++....|++.+ |+ .+.+|.||+|+|. .|+
T Consensus 194 ---~~~~~~~~~~gv--~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~--~p~ 252 (323)
T 3f8d_A 194 ---IYVETVKKKPNV--EFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGF--DPP 252 (323)
T ss_dssp ---HHHHHHHTCTTE--EEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCE--ECC
T ss_pred ---HHHHHHHhCCCc--EEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECC--CCC
Confidence 223333444466 588899999998865555566654 65 6899999999998 554
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.9e-06 Score=84.64 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=36.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
+||+|||||++||+||..|++.|++|+|+|+++.+||..
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~ 78 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRS 78 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcc
Confidence 799999999999999999999999999999999998754
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=5e-06 Score=79.96 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=66.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhccC--CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 251 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~--~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 251 (433)
|+|+|||+|..|+.+|..|.+.+ .+|+++.+++.+..... +|. ...+..
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~------------l~~-----------------v~~g~~ 53 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPA------------FPH-----------------LAMGWR 53 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGG------------HHH-----------------HHHTCS
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCcc------------HHH-----------------HhcCCC
Confidence 68999999999999999999864 68999999886432210 000 000000
Q ss_pred CcCCCCCCCCCCCCCCCccChhhhhcccCCCeee-cCCceeee--CCeEEecCCceeeccEEEEccCCCCCCC
Q psy2398 252 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFP 321 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~v~~~~--~~~v~~~dG~~~~~D~vi~atG~~~~~~ 321 (433)
....+ ...+.+.+...+++. ...++.++ .+.|++++|+++++|.+|+|||.++.++
T Consensus 54 ~~~~i--------------~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~~~ 112 (430)
T 3hyw_A 54 KFEDI--------------SVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFG 112 (430)
T ss_dssp CGGGS--------------EEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEECC
T ss_pred CHHHh--------------hhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCccCC
Confidence 00000 001111222225553 45677775 5789999999999999999999876543
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.1e-05 Score=72.31 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=68.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+. ...
T Consensus 155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~----------------------------------------~~~ 194 (319)
T 3cty_A 155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM----------------------------------------CEN 194 (319)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC----------------------------------------SCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC----------------------------------------CCH
Confidence 3689999999999999999999999999999865330 012
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEc---cCc--EEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELS---NGK--KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~---~g~--~~~~d~vIvAtG~~s~p~~ 148 (433)
. +.+.+.+.++ +++++++|+++..+++ ...+.+. +|+ ++.+|.||+|+|. .|+.
T Consensus 195 ~----l~~~l~~~gv--~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~ 254 (319)
T 3cty_A 195 A----YVQEIKKRNI--PYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGL--IPQT 254 (319)
T ss_dssp H----HHHHHHHTTC--CEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCE--EECC
T ss_pred H----HHHHHhcCCc--EEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCC--ccCh
Confidence 2 2233345677 5889999999987644 2234443 454 5899999999998 5543
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=71.80 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=67.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.+.+|+++++.+.+. + .
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------------------------------~--~- 182 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--------------------------------------A--D- 182 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--------------------------------------S--C-
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--------------------------------------c--c-
Confidence 4689999999999999999999999999999875430 0 0
Q ss_pred HHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeE-EEEEcc---Cc--EEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIW-EVELSN---GK--KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~---g~--~~~~d~vIvAtG~~s~p~~ 148 (433)
+.+.+...+ .++ +++++++|+++..+++.. .+.+.+ |+ ++.+|.||+|+|. .|+.
T Consensus 183 ---~~~~~~l~~~~gv--~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~ 244 (310)
T 1fl2_A 183 ---QVLQDKLRSLKNV--DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL--LPNT 244 (310)
T ss_dssp ---HHHHHHHHTCTTE--EEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE--EESC
T ss_pred ---HHHHHHHhhCCCe--EEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCC--ccCc
Confidence 122233333 466 588899999998764432 344432 43 5889999999998 5543
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=81.81 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=68.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.. . .-..
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~------------------------------------~-~~~~ 188 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLE------------------------------------R-QLDR 188 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT------------------------------------T-TSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch------------------------------------h-hcCH
Confidence 36899999999999999999999999999999865410 0 0125
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+++.+..++.++ +++++++|.++ +.++.+|.||+|+|. .|+.
T Consensus 189 ~~~~~~~~~l~~~gV--~~~~~~~v~~i-------------g~~~~~D~vv~a~G~--~p~~ 233 (385)
T 3klj_A 189 DGGLFLKDKLDRLGI--KIYTNSNFEEM-------------GDLIRSSCVITAVGV--KPNL 233 (385)
T ss_dssp HHHHHHHHHHHTTTC--EEECSCCGGGC-------------HHHHHHSEEEECCCE--EECC
T ss_pred HHHHHHHHHHHhCCC--EEEeCCEEEEc-------------CeEEecCeEEECcCc--ccCh
Confidence 667778888888888 57878777655 356889999999998 5553
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.9e-06 Score=80.73 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=40.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..+||+|||||++|+++|..|++.|.+|+++|+++.+||.+...
T Consensus 5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~ 48 (433)
T 1d5t_A 5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI 48 (433)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccccc
Confidence 45899999999999999999999999999999999999987654
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.9e-06 Score=78.77 Aligned_cols=36 Identities=11% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++||+|||||++|+++|++|++.|.+|+|+|+..
T Consensus 4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 456899999999999999999999999999999875
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=73.18 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=70.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+ ....
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~----------------------------------------~~~~ 186 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF----------------------------------------RAAP 186 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC----------------------------------------BSCH
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC----------------------------------------CCCH
Confidence 468999999999999999999999999999987543 0001
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEEc--cCc--EEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELS--NGK--KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~~--~g~--~~~~d~vIvAtG~~s~p~~ 148 (433)
++++...++.++ +++++++|.+++.+++. ..+++. +|+ ++.+|.||+|+|. .|+.
T Consensus 187 ---~~~~~~~~~~gv--~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~--~p~~ 246 (315)
T 3r9u_A 187 ---STVEKVKKNEKI--ELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL--NVRN 246 (315)
T ss_dssp ---HHHHHHHHCTTE--EEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCE--EECC
T ss_pred ---HHHHHHHhcCCe--EEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC--CCCc
Confidence 233344456676 58889999999887533 234444 665 6899999999998 5543
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.00 E-value=3e-06 Score=81.53 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3799999999999999999999999999999876
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-05 Score=71.28 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=67.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.| +|+++++.+..
T Consensus 141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~-------------------------------------------- 175 (297)
T 3fbs_A 141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE-------------------------------------------- 175 (297)
T ss_dssp TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC--------------------------------------------
T ss_pred CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC--------------------------------------------
Confidence 468999999999999999999999 99999876420
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
+.+.+.+..++.++ .++ .++|.+++. +. .|++.+++++.+|.||+|+|. .|+.
T Consensus 176 -~~~~~~~~l~~~gv--~i~-~~~v~~i~~--~~-~v~~~~g~~~~~D~vi~a~G~--~p~~ 228 (297)
T 3fbs_A 176 -PDADQHALLAARGV--RVE-TTRIREIAG--HA-DVVLADGRSIALAGLFTQPKL--RITV 228 (297)
T ss_dssp -CCHHHHHHHHHTTC--EEE-CSCEEEEET--TE-EEEETTSCEEEESEEEECCEE--ECCC
T ss_pred -CCHHHHHHHHHCCc--EEE-cceeeeeec--CC-eEEeCCCCEEEEEEEEEccCc--ccCc
Confidence 01234455666777 365 478888864 22 788888888999999999998 5544
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-05 Score=73.19 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=68.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|.+|+.+|..|.+.|.+|+++++.+.+. . ..
T Consensus 159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~---------------------------------------~-~~ 198 (333)
T 1vdc_A 159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR---------------------------------------A-SK 198 (333)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC---------------------------------------S-CH
T ss_pred CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC---------------------------------------c-cH
Confidence 4689999999999999999999999999999875430 0 01
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC--e-EEEEEc---cC--cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--I-WEVELS---NG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~--~-~~v~~~---~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
.+ .+...++.++ +++++++|.+++.+++ . ..+.+. +| .++.+|.||+|+|. .|+.
T Consensus 199 ~~---~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~ 261 (333)
T 1vdc_A 199 IM---QQRALSNPKI--DVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH--EPAT 261 (333)
T ss_dssp HH---HHHHHTCTTE--EEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCE--EESC
T ss_pred HH---HHHHHhCCCe--eEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCC--ccch
Confidence 11 1233344566 5788999999987642 2 234443 34 46899999999998 5554
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.8e-06 Score=79.66 Aligned_cols=44 Identities=20% Similarity=0.139 Sum_probs=40.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..+||+|||+|++|+++|..|++.|.+|+++|+++.+||.+...
T Consensus 19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~ 62 (475)
T 3p1w_A 19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASL 62 (475)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCcccc
Confidence 45899999999999999999999999999999999999987654
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=9.8e-06 Score=77.16 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccC--CcEEEEEecCceeecccCCCCChhHHhHh-h-chhhcCchHHHHHHHHHHHHh
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQ-L-GNKFSSKEETMAYIKQVFKLA 247 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~--~~V~~~~r~~~~~~p~~~~~~~~~~~~~~-~-p~~~~~~~~~~~~~~~~~~~~ 247 (433)
.||+|+|||+|..|+-+|..|.+.+ .+|+++.+++.+.... ....+... . +..+..
T Consensus 1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p-----~~~~v~~g~~~~~~~~~--------------- 60 (401)
T 3vrd_B 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCY-----MSNEVIGGDRELASLRV--------------- 60 (401)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECST-----THHHHHHTSSCGGGGEE---------------
T ss_pred CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCcc-----CHHHHhcCCCCHHHHhh---------------
Confidence 3899999999999999999998764 4799998876532210 00000000 0 000000
Q ss_pred cCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee-ecCCceeee--CCeEEecCCceeeccEEEEccCCCCCCCCC
Q psy2398 248 GFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL-PKDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFI 323 (433)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~v~~~~--~~~v~~~dG~~~~~D~vi~atG~~~~~~~l 323 (433)
....+. .. .++ +...+..++ .+.+.+.+|.++.+|.+|+|||.+++.+-+
T Consensus 61 ----------------------~~~~~~---~~-gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i 113 (401)
T 3vrd_B 61 ----------------------GYDGLR---AH-GIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKI 113 (401)
T ss_dssp ----------------------CSHHHH---HT-TCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred ----------------------CHHHHH---HC-CCEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccccCCc
Confidence 001111 11 344 345677775 467889999999999999999999875543
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=6.3e-06 Score=80.31 Aligned_cols=43 Identities=26% Similarity=0.482 Sum_probs=38.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNS 48 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~ 48 (433)
..+||+|||||++|+++|..|.+.|+ +|+|+|+++.+||.+..
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~ 46 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK 46 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence 45899999999999999999999999 89999999999987654
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.1e-05 Score=71.40 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=69.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.+.+|+++++.+.+. ...
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~----------------------------------------~~~ 193 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR----------------------------------------AHE 193 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS----------------------------------------SCH
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC----------------------------------------ccH
Confidence 4689999999999999999999999999999875430 001
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-----CcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-----GKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-----g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.. + ..+++.++ .++.+++|.++..+++...|++.+ +.++.+|.||+|+|. .|+.
T Consensus 194 ~~---~-~~l~~~gv--~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~--~p~~ 252 (332)
T 3lzw_A 194 HS---V-ENLHASKV--NVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGF--VSSL 252 (332)
T ss_dssp HH---H-HHHHHSSC--EEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCE--ECCC
T ss_pred HH---H-HHHhcCCe--EEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeecc--CCCc
Confidence 11 1 22456677 588899999998765544565554 346899999999998 5543
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3.8e-05 Score=74.49 Aligned_cols=84 Identities=12% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||+|.+|+.+|..|++.|.+|+++++++.+- .. . ++
T Consensus 197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~---~~-----------------------------~---~~--- 238 (464)
T 2xve_A 197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM---GY-----------------------------K---WP--- 238 (464)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC---CC-----------------------------C---CC---
T ss_pred CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC---CC-----------------------------C---CC---
Confidence 4789999999999999999999999999999876430 00 0 00
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
..+.+...|.+++ ++ .|++.+|+++.+|.||+|||. .|+.|-
T Consensus 239 ----------------~~V~~~~~V~~i~--~~--~V~~~dG~~i~~D~Vi~atG~--~p~~~~ 280 (464)
T 2xve_A 239 ----------------ENWDERPNLVRVD--TE--NAYFADGSSEKVDAIILCTGY--IHHFPF 280 (464)
T ss_dssp ----------------TTEEECSCEEEEC--SS--EEEETTSCEEECSEEEECCCB--CCCCTT
T ss_pred ----------------CceEEcCCeEEEe--CC--EEEECCCCEEeCCEEEECCCC--CCCCCC
Confidence 1234446777764 23 477788888999999999998 666553
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.2e-05 Score=74.43 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=67.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|.+.|.+|+++++.+.+. . . .
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~----~-----------------------------------~-~ 194 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR----A-----------------------------------S-K 194 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS----S-----------------------------------C-T
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC----c-----------------------------------c-H
Confidence 4789999999999999999999999999999875430 0 0 0
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe--EEEEE-ccC--cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVEL-SNG--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~--~~v~~-~~g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.+ .....++.++ +++++++|++++.+++. ..+.. .+| .++.+|.||+|+|. .|+.+
T Consensus 195 ~~---~~~~~~~~gV--~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~ 255 (335)
T 2a87_A 195 IM---LDRARNNDKI--RFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGH--EPRSG 255 (335)
T ss_dssp TH---HHHHHHCTTE--EEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCE--EECCT
T ss_pred HH---HHHHhccCCc--EEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCC--ccChh
Confidence 01 1123344566 58889999999875432 33332 133 46899999999998 55543
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=76.55 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=66.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhc---cCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD 250 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~---~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 250 (433)
++|+|||+|.+|+.+|..|.+ .+.+|+++.+++.+..... ...+.. .. ... + .+
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~-----~~~~~~---g~-~~~-------~----~~--- 61 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPS-----NPWVGV---GW-KER-------D----DI--- 61 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGG-----HHHHHH---TS-SCH-------H----HH---
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCC-----cccccc---Cc-cCH-------H----HH---
Confidence 689999999999999999999 6889999999875422210 000000 00 000 0 00
Q ss_pred CCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee-cCCceeeeC--CeEEecCCceeeccEEEEccCCCCCCCCCC
Q psy2398 251 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFID 324 (433)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~v~~~~~--~~v~~~dG~~~~~D~vi~atG~~~~~~~l~ 324 (433)
...+.+.+....+++ ...+..++. ..|.+++|+++.+|.+|+|||.+++.+-++
T Consensus 62 --------------------~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ip 118 (437)
T 3sx6_A 62 --------------------AFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVP 118 (437)
T ss_dssp --------------------EEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGST
T ss_pred --------------------HHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccCC
Confidence 000111111123332 345666653 578899999999999999999998765443
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=81.93 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=38.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
..++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~ 147 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA 147 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 357999999999999999999999999999999999998654
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.2e-05 Score=70.34 Aligned_cols=176 Identities=15% Similarity=0.104 Sum_probs=96.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVD 253 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (433)
..|+|||+|.+|+++|..|++.+.+|+++.++.... |.+.. ..++..... .+.+ .+. + .
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~------G~~~~---~~~~~~~~~-----~~~~----~~~-d--~ 62 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAV------MMPFL---PPKPPFPPG-----SLLE----RAY-D--P 62 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT------TCCSS---CCCSCCCTT-----CHHH----HHC-C--T
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcC------CcccC---ccccccchh-----hHHh----hhc-c--C
Confidence 369999999999999999999999999999873211 00000 000000000 0000 000 0 0
Q ss_pred CCCCCCCCCCCCCCCccChhhhhcccC-CCeee-cCCceeee--CC---eEEecCCceeeccEEEEccCCCCCCCCCC--
Q psy2398 254 YGLKKPDHPLDAAHPIMNSQILYHIGH-GDILP-KDDIKNLN--GN---IVHFVDDTHIEVDTIIYATGYNRHFPFID-- 324 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~v~~~~--~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~-- 324 (433)
.+ | .+..+...+.+.+.. +.+++ ...++++. +. .|.+.+|.++++|.||+|||...+...+.
T Consensus 63 ~g---~------~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~ 133 (232)
T 2cul_A 63 KD---E------RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGG 133 (232)
T ss_dssp TC---C------CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETT
T ss_pred CC---C------CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCC
Confidence 00 0 000111222222332 24443 34566553 22 46678898899999999999965422110
Q ss_pred ---------------------ccccccc---------CCccc-------cc------cccccCCCCcEEEEccccccCCh
Q psy2398 325 ---------------------KEKLEWK---------LGIPD-------LF------IHIAPRNLDNIFFFGFVNAAAGL 361 (433)
Q Consensus 325 ---------------------~~~~~~~---------~~~~~-------~~------~~~~~~~~p~i~~iG~~~~~~~~ 361 (433)
...+... .+.|. +. ..+..+++|+||++|||+ ..+.
T Consensus 134 ~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g~ 212 (232)
T 2cul_A 134 VVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REGD 212 (232)
T ss_dssp EEESEEETTEECCSHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCCC
T ss_pred ccCCCCCCcccchhhhCHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCcc
Confidence 0000000 00000 00 011225899999999999 6678
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q psy2398 362 GDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 362 ~~~a~~qa~~~a~~i~g~~ 380 (433)
+..+..|++.+|.+|..++
T Consensus 213 ~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 213 YARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 8889999999999997654
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-05 Score=82.94 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=38.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
..++|+|||||++||++|..|.+.|++|+|||+.+.+||.+.
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~ 318 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA 318 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCcee
Confidence 357999999999999999999999999999999999998643
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.2e-05 Score=73.93 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=61.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++|+|||+|++|+.+|..|++.+.+ |+++++.+.+ .
T Consensus 212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~-----l------------------------------------- 249 (447)
T 2gv8_A 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD-----I------------------------------------- 249 (447)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS-----C-------------------------------------
T ss_pred CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc-----C-------------------------------------
Confidence 46899999999999999999999998 9999986532 0
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcE-EEeCEEEEccCCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKK-KKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~-~~~d~vIvAtG~~s~p~~p~ 150 (433)
.. ..+..+..|+++..++. .|++.+|+. +.+|.||+|||. .|+.|-
T Consensus 250 -----------~~----~~i~~~~~v~~~~~~~~--~v~~~dG~~~~~~D~vi~atG~--~~~~~~ 296 (447)
T 2gv8_A 250 -----------QN----ESLQQVPEITKFDPTTR--EIYLKGGKVLSNIDRVIYCTGY--LYSVPF 296 (447)
T ss_dssp -----------BC----SSEEEECCEEEEETTTT--EEEETTTEEECCCSEEEECCCB--CCCCCC
T ss_pred -----------CC----CCeEEecCeEEEecCCC--EEEECCCCEeccCCEEEECCCC--CcCCCC
Confidence 00 12445567777653333 577788876 689999999998 666554
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=97.84 E-value=1.2e-05 Score=80.72 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=37.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
..+||+|||||++|+++|..|++.|++|+|+|+.+..||.+
T Consensus 45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 35799999999999999999999999999999998888755
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=72.57 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=33.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
|+||+|||||++|+.+|..|++.|.+|+++|+++..
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~ 36 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR 36 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence 369999999999999999999999999999988744
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.4e-05 Score=79.86 Aligned_cols=98 Identities=11% Similarity=0.099 Sum_probs=71.9
Q ss_pred CCcEEEEC--CChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIG--GGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIG--aG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+|+||| +|+.|+.+|..|.+.|.+|+++++.+.+.....
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~------------------------------------- 565 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN------------------------------------- 565 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG-------------------------------------
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc-------------------------------------
Confidence 35799999 999999999999999999999998765421110
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE---ccCcEEEeCEEEEccCCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL---SNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~---~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.....+.+.+.+++.++ +++.+++|++++. +...+.. .++.++.+|.||+|+|. .|+
T Consensus 566 ~~~~~~~l~~~l~~~GV--~i~~~~~V~~i~~--~~~~v~~~~~~~~~~i~aD~VV~A~G~--~p~ 625 (690)
T 3k30_A 566 NTFEVNRIQRRLIENGV--ARVTDHAVVAVGA--GGVTVRDTYASIERELECDAVVMVTAR--LPR 625 (690)
T ss_dssp GGTCHHHHHHHHHHTTC--EEEESEEEEEEET--TEEEEEETTTCCEEEEECSEEEEESCE--EEC
T ss_pred cchhHHHHHHHHHHCCC--EEEcCcEEEEEEC--CeEEEEEccCCeEEEEECCEEEECCCC--CCC
Confidence 01123455666777788 5899999999874 4444443 23457899999999998 554
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3.9e-05 Score=73.19 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=32.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhc---cCCcEEEEEecCce
Q psy2398 174 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRGYH 208 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~---~~~~V~~~~r~~~~ 208 (433)
++|+|||+|.+|+.+|..|++ .+.+|+++.+++.+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~ 39 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS 39 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCc
Confidence 579999999999999999999 78999999998753
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=72.34 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=67.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|.+|+.+|..|++.|.+|+++++.+.+. . .
T Consensus 355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~---------------------------------------~-~- 393 (521)
T 1hyu_A 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---------------------------------------A-D- 393 (521)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC---------------------------------------S-C-
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC---------------------------------------c-C-
Confidence 4689999999999999999999999999999875430 0 0
Q ss_pred HHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeE-EEEEcc---Cc--EEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIW-EVELSN---GK--KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~---g~--~~~~d~vIvAtG~~s~p~~ 148 (433)
+++.+...+ .++ .+++++.++.+..+++.. .+.+.+ |+ ++.+|.||+|+|. .|+.
T Consensus 394 ---~~l~~~l~~~~gV--~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~--~pn~ 455 (521)
T 1hyu_A 394 ---QVLQDKVRSLKNV--DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL--LPNT 455 (521)
T ss_dssp ---HHHHHHHTTCTTE--EEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE--EESC
T ss_pred ---HHHHHHHhcCCCc--EEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC--CCCc
Confidence 223333333 355 588899999998754433 355442 43 5889999999997 5543
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.5e-05 Score=74.45 Aligned_cols=33 Identities=18% Similarity=0.460 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcC------CCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN------INYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g------~~v~v~e~~~ 40 (433)
+||+|||||++|+++|++|++.| .+|+|+|+..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 48999999999999999999998 8999999975
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00018 Score=76.10 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=68.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
.+|+|||+|+.|+.+|..|++.|.+|+|+|+.+.+ . ..
T Consensus 285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~----------------------------------------~-~~- 322 (965)
T 2gag_A 285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSI----------------------------------------S-AA- 322 (965)
T ss_dssp SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC----------------------------------------C-HH-
T ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc----------------------------------------c-hh-
Confidence 68999999999999999999999999999987543 0 01
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEcc-------C--cEEEeCEEEEccCCCCCCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSN-------G--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~~-------g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
.+.+++.++ .+++++.|+++..+ +....|++.+ | .++.+|.||+|+|. .|+.
T Consensus 323 -----~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~--~P~~ 385 (965)
T 2gag_A 323 -----AAQAVADGV--QVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGF--NPVV 385 (965)
T ss_dssp -----HHHHHHTTC--CEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE--EECC
T ss_pred -----HHHHHhCCe--EEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCc--CcCh
Confidence 234566788 59999999999873 3322344432 3 56899999999998 5554
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=66.46 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||+|+.|+.+|..|++.|.+|+++++..
T Consensus 152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~ 185 (314)
T 4a5l_A 152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD 185 (314)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence 4689999999999999999999999999999764
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.55 E-value=9.2e-05 Score=68.85 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=29.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|.+|+.+|..|.+.+ +|+++.+..
T Consensus 163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~ 195 (357)
T 4a9w_A 163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE 195 (357)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence 468999999999999999999998 699998863
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00018 Score=69.51 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~~ 41 (433)
..++|+|||||..|+.+|..+.+.|.+ |+++++++.
T Consensus 263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~ 299 (456)
T 2vdc_G 263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR 299 (456)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence 347899999999999999999999985 999998754
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00013 Score=74.90 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=68.8
Q ss_pred CCcEEEEC--CChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIG--GGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIG--aG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+|+||| +|..|+.+|..|++.|.+|+++++.+ +..... +..
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~----------------------------------~~~ 572 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMH----------------------------------FTL 572 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHH----------------------------------HTT
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccc----------------------------------ccc
Confidence 46899999 99999999999999999999999876 411000 000
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE--ccC-cE------------------EEeCEEEEccCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--SNG-KK------------------KKYDFIAVCNGAQ 143 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~--~~g-~~------------------~~~d~vIvAtG~~ 143 (433)
. .+.+.+..++.++ +++++++|++++. +...+.. .++ .. +.+|.||+|+|.
T Consensus 573 ~---~~~~~~~l~~~GV--~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~- 644 (729)
T 1o94_A 573 E---YPNMMRRLHELHV--EELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR- 644 (729)
T ss_dssp C---HHHHHHHHHHTTC--EEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE-
T ss_pred c---HHHHHHHHHhCCC--EEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCC-
Confidence 0 2344555667788 5899999999864 3444443 222 22 899999999998
Q ss_pred CCCCC
Q psy2398 144 RVARY 148 (433)
Q Consensus 144 s~p~~ 148 (433)
.|+.
T Consensus 645 -~p~~ 648 (729)
T 1o94_A 645 -HSEC 648 (729)
T ss_dssp -EECC
T ss_pred -CCCh
Confidence 5543
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=3.4e-05 Score=77.76 Aligned_cols=36 Identities=33% Similarity=0.597 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--------CCeEEEccCC-CC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--------INYDLYEMES-DL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--------~~v~v~e~~~-~~ 42 (433)
+++|+|||||++||++|..|.+.| ++|+|||+++ .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 468999999999999999999998 9999999998 88
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00018 Score=65.53 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=29.4
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|+.|+..|..+++.+.+|+++.+..
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~ 39 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNT 39 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 59999999999999999999999999998753
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00059 Score=69.40 Aligned_cols=130 Identities=16% Similarity=0.092 Sum_probs=67.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEc--cCCCCCCc--ccCCCCCCccccceEeecCCCcccCCCCCCCCCCC-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYE--MESDLGGV--WNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYP- 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e--~~~~~Gg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (433)
...+|+|||||+.|+.+|..|++.|.+|++.- .....|-. +.........++... .....+.-+... +....
T Consensus 493 ~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~--~~~l~~ 569 (671)
T 1ps9_A 493 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIP-RSPRQIVMLQRK--ASKPGQ 569 (671)
T ss_dssp CCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCC-CCSSEEEEECSS--CSCTTT
T ss_pred CCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccC-CCCcEEEEEEec--chhhcc
Confidence 34789999999999999999999887765420 00000000 000000000000000 000000000000 00000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~ 147 (433)
.+. .....++....++.++ +++.+++|+.++ +++..++ .+| .++.+|.||+|+|. .|+
T Consensus 570 ~l~--~~~~~~~~~~l~~~GV--~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~--~p~ 629 (671)
T 1ps9_A 570 GLG--KTTGWIHRTTLLSRGV--KMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQ--EPN 629 (671)
T ss_dssp TSC--TTTHHHHHHHHHHTTC--EEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCE--EEC
T ss_pred ccc--cccHHHHHHHHHhcCC--EEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCc--ccc
Confidence 011 1233455566677788 588899999887 3455554 566 46899999999998 554
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0019 Score=63.72 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHh-ccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDAS-HHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~-~~~~~V~~~~r~~ 206 (433)
.+|+|||+|.+|+-+|..|. +.|.+|+++.+++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~ 42 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKAD 42 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCC
Confidence 47999999999999999999 8899999999865
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00072 Score=61.66 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=32.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+
T Consensus 145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 180 (312)
T 4gcm_A 145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL 180 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence 368999999999999999999999999999987643
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00099 Score=65.87 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+|+|||+|.+|+-+|..|.+.+.+|+++.+++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~ 54 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS 54 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999865
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00084 Score=63.12 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
...|+|||+|.+|+.+|..|++.|.+|+++.+++.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 45 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE 45 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 45899999999999999999999999999998764
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00092 Score=64.50 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--------------------CC-CeEEEccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--------------------NI-NYDLYEMESDL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--------------------g~-~v~v~e~~~~~ 42 (433)
..+|+|||+|..|+.+|..|++. |. +|++++++..+
T Consensus 147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~ 203 (456)
T 1lqt_A 147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL 203 (456)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence 46899999999999999999874 55 89999987643
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0013 Score=63.47 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHH--------------------hcCC-CeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELS--------------------EGNI-NYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~--------------------~~g~-~v~v~e~~~~ 41 (433)
..+|+|||+|..|+.+|..|+ +.|. +|+|+++++.
T Consensus 145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~ 200 (460)
T 1cjc_A 145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 200 (460)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence 478999999999999999999 5687 6999998764
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0011 Score=65.37 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+|+|||+|.+|+-+|..|.+.+.+|+++.+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~ 42 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGE 42 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00022 Score=70.68 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=33.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..+|++|||||++|+.+|.+|++.|++|+|+|+...
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 458999999999999999999999999999999863
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0026 Score=67.69 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=62.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+|+|||||..|+.+|..+.+.|. +|+++++.+.. . .+. ..
T Consensus 332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~-----~------------------------------~~~--~~ 374 (1025)
T 1gte_A 332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV-----N------------------------------IRA--VP 374 (1025)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG-----G------------------------------CCS--CH
T ss_pred CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChh-----h------------------------------CCC--CH
Confidence 3589999999999999999999997 89999987521 0 000 01
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEc------c-------C--cEEEeCEEEEccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS------N-------G--KKKKYDFIAVCNGA 142 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~------~-------g--~~~~~d~vIvAtG~ 142 (433)
.++ ..+++.|+ .+++++.+.++..+++... |++. + + .++.+|.||+|+|.
T Consensus 375 ~e~-----~~~~~~Gv--~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~ 440 (1025)
T 1gte_A 375 EEV-----ELAKEEKC--EFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 440 (1025)
T ss_dssp HHH-----HHHHHTTC--EEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred HHH-----HHHHHcCC--EEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCC
Confidence 222 23455677 5778888888876544322 2221 1 1 35889999999997
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00054 Score=64.92 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..+|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 45899999999999999999999999999998864
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=69.43 Aligned_cols=35 Identities=34% Similarity=0.420 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
...|+|||+|.+|+.+|..|++.|.+|+++.+++.
T Consensus 92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~ 126 (497)
T 2bry_A 92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK 126 (497)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence 56899999999999999999999999999998864
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00044 Score=68.80 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=40.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..+||+|+|+|..|...|..|++.|.+|+++|+++..||.|...
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~ 50 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASF 50 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccc
Confidence 35899999999999999999999999999999999999987654
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00025 Score=69.93 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHh-cCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~v~e~~~~ 41 (433)
..+|+||||||++|+.+|.+|++ .+++|+|+|+++.
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 35899999999999999999998 5789999998864
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0003 Score=67.07 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=31.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus 28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~ 61 (417)
T 3v76_A 28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA 61 (417)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4799999999999999999999999999998763
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00031 Score=69.27 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
.+|++|||||++|+.+|.+|++ |.+|+|+|+....
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence 4799999999999999999999 9999999998654
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00043 Score=68.66 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~ 41 (433)
..+|++|||||.+|+.+|.+|++.+ .+|+|+|+.+.
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 4589999999999999999999987 79999999875
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00054 Score=67.11 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
..+|++|||+|++|+.+|..|.+.|.+|+|+|+....+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 45899999999999999999999999999999987543
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0048 Score=58.33 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..+|+|||+|.+|+-+|..|++.|.+|+++.|++.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45899999999999999999999999999999864
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0026 Score=60.20 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=31.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.+|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3799999999999999999999999999998764
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00072 Score=67.07 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~ 40 (433)
..+|++|||||.+|+.+|.+|++. +.+|+|+|+.+
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 458999999999999999999975 78999999987
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0057 Score=59.75 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~ 41 (433)
..++|+|||+|.+|+.++..|++. +.+|+++-|++.
T Consensus 245 ~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~ 282 (501)
T 4b63_A 245 KPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA 282 (501)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 346899999999999999999875 678999988753
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0035 Score=61.90 Aligned_cols=33 Identities=33% Similarity=0.273 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|+|||+|.+|+-+|..|.+.|.+|+++.+++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~ 49 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAG 49 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00099 Score=65.25 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..+|++|||+|++|+.+|..|.+.|.+|+++|++..
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 458999999999999999999999999999998764
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0025 Score=60.30 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
-+|+|||+|++|+-+|..|++.|-+|+++.|++.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3799999999999999999999999999998764
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00097 Score=65.58 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+.|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~ 140 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence 4579999999999999999999999999999875
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=66.02 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHh-cCCCeEEEccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMESDL 42 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~v~e~~~~~ 42 (433)
..+|++|||+|++|+.+|.+|.+ .|.+|+++|++...
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 45899999999999999999999 79999999987643
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=65.64 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=33.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDL 42 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~ 42 (433)
..+|++|||+|++|+.+|.+|++. |.+|+++|++...
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 458999999999999999999998 8999999998654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.002 Score=51.99 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=32.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
....+|+|||+|..|..+|..|.+.|.+|+++|+..
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 345689999999999999999999999999999865
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0024 Score=50.58 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+.+|+|+|+|..|..+|..|.+.|++|+++|+.+
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45689999999999999999999999999999864
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00086 Score=66.33 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHh-cCCCeEEEccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMESDL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~v~e~~~~~ 42 (433)
.+|++|||||.+|+.+|.+|++ .+.+|+|+|+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 3899999999999999999998 68999999998654
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0088 Score=56.63 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+...|+|||+|.+|+-+|..|++.|.+|+++.|.+.
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 345899999999999999999999999999999864
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=61.67 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..+++.|.+|+++.+.+.
T Consensus 6 dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~ 38 (401)
T 2gqf_A 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK 38 (401)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 599999999999999999999999999998763
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0068 Score=60.39 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
-.|+|||+|.+|+.+|..+++.|.+|.++.+++
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~ 61 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI 61 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence 379999999999999999999999999999863
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0054 Score=52.48 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.+++|+|||+|.+|.--+..|.+.|.+|+++.++
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 467999999999999999999999999999998754
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0045 Score=58.91 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 379999999999999999999999999999875
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0075 Score=56.82 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=30.9
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 36 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 599999999999999999999999999998764
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.015 Score=53.48 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=30.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhc---cCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~---~~~~V~~~~r~~ 206 (433)
++|+|||+|.+|+-+|..|++ .|.+|+++.+++
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~ 37 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence 369999999999999999999 899999999874
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0098 Score=46.95 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|..|...|..|.+.|++|+++|+.+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4689999999999999999999999999999865
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0069 Score=47.58 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||+|..|...|..|.+.|.+|+++|+..
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999999999999999854
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.02 Score=56.98 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
-.|+|||+|.+|+++|..+++.|.+|.++.+++
T Consensus 22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~ 54 (641)
T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDL 54 (641)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence 479999999999999999999999999999874
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0095 Score=57.24 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..|++.+.+|+++.+.+.
T Consensus 28 dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~ 60 (447)
T 2i0z_A 28 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 60 (447)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 699999999999999999999999999998763
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0085 Score=47.25 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+.+|+|+|+|..|..++..|.+.|.+|+++|+..
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34679999999999999999999999999999753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0072 Score=45.83 Aligned_cols=35 Identities=14% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~ 40 (433)
.+++|+|+|+|..|..++..|.+.| .+|+++++..
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 3468999999999999999999999 8999999864
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.015 Score=57.63 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|++.|..+++.|.+|.++.+++
T Consensus 29 DVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~ 60 (637)
T 2zxi_A 29 DVVVIGGGHAGIEAALAAARMGAKTAMFVLNA 60 (637)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999863
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.014 Score=46.75 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
..+|+|+|+|..|...+..|.+.|.+|+++|+.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 368999999999999999999999999999986
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.029 Score=55.87 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
...|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~ 56 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence 4689999999999999999999999999999875
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.013 Score=56.30 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=31.0
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus 8 dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~ 40 (453)
T 3atr_A 8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40 (453)
T ss_dssp SEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 699999999999999999999999999998864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.012 Score=53.22 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=31.2
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|+ .+...+|+|||||..|...|..++..|++|+++|..+
T Consensus 1 Ma-~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 1 MA-SPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CC-CCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 44 3345689999999999999999999999999999764
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.012 Score=53.63 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
|.|+..+.+|+|||+|..|.++|..|+..++ +++++|...
T Consensus 1 ~~m~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 1 MEMVKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp ------CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 5554456799999999999999999999988 899999753
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.02 Score=51.73 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|+|||+|..|...|..|++.|++|+++|+..
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 45789999999999999999999999999999864
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.017 Score=52.21 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=31.9
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|++...+++|.|||+|..|...|..|.+.|++|+++++.+
T Consensus 1 M~~~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 1 MSLTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 5544456789999999999999999999999999999865
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.038 Score=53.71 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 96 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 96 ~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
+++.|+ ++++++.|+++..+++...+.+.++.++.+|.||+|+|. .|+
T Consensus 267 l~~~GV--~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~--~p~ 314 (493)
T 1y56_A 267 LERWGI--DYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGR--RPD 314 (493)
T ss_dssp HHHHTC--EEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCE--EEC
T ss_pred HHhCCc--EEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCc--CcC
Confidence 344566 578888888887654445566778888999999999998 444
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.024 Score=51.95 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=32.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
..+++|+|||||..|.+.|..|+..|+ +|+++|...
T Consensus 7 ~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 7 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 344689999999999999999999998 999999864
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.027 Score=46.59 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~ 40 (433)
..+|+|||+|..|..+|..|.+. |++|+++|+.+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 35899999999999999999999 99999999864
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.023 Score=54.58 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|+|||.|.+|+++|..|.++|++|+++|.+.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 34789999999999999999999999999999864
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=51.66 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|++|+-+|..|++.|.+|+++.+++.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG 36 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 499999999999999999999999999998753
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.051 Score=52.80 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 88 MLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 88 ~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
+.+.+.+.+...+ + +++++++|++|+.+++.+.|++.+|+++.||+||+|+|....
T Consensus 257 l~~~l~~~l~~~g~~--~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l 313 (495)
T 2vvm_A 257 FARRFWEEAAGTGRL--GYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVL 313 (495)
T ss_dssp HHHHHHHHHHTTTCE--EEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGG
T ss_pred HHHHHHHHhhhcCce--EEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHH
Confidence 3343444444333 3 489999999999887789999988888999999999997543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.031 Score=50.02 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||+|.-|...|..|++.|++|+++|+..
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.033 Score=47.54 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
..+.|+|||||..|...+..|.+.|.+|+|+++.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4578999999999999999999999999999974
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.023 Score=54.38 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=32.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.++|+|||.|.+|+++|..|.++|++|+++|.+..
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~ 39 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence 46899999999999999999999999999998654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.029 Score=47.95 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||+|..|...|..|.+.|++|+++|+.+
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 69999999999999999999999999999864
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.032 Score=50.87 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||+|.-|...|..|++.|.+|+++++..
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 589999999999999999999999999999864
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.036 Score=51.74 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..+|+|||+|..|+.+|..|...|.+|+++|+...
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~ 224 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA 224 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998753
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.055 Score=48.94 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=33.9
Q ss_pred CCCCC--CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 1 MKYKN--KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 1 M~~~~--~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|+|.. .+++|.|||.|..|...|..|.+.|++|+++++..
T Consensus 1 m~m~~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 1 MSLSDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp -CCCCCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 55532 45789999999999999999999999999999865
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.039 Score=50.21 Aligned_cols=34 Identities=21% Similarity=0.509 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
+++|+|||||..|...|..|++.|+ +|+++|+..
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 4689999999999999999999998 999999864
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.032 Score=52.84 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++.+|+|||.|+.||.+|..|++.|++|+.+|-..
T Consensus 19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 356799999999999999999999999999999764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.045 Score=50.62 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|+|||+|.-|.+.|..|++.|.+|+++++.+
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 34689999999999999999999999999999864
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.038 Score=50.19 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||+|..|...|..|.+.|.+|++++++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 589999999999999999999999999999864
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.016 Score=56.44 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
|+|+|||+|.+|+-.|..|++.|.+|+++++++.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~ 35 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK 35 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence 6899999999999999999999999999998753
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.044 Score=50.94 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
|++|+|||||..|..+++.+++.|++++++|..+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46999999999999999999999999999997664
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.037 Score=44.41 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=32.9
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 165 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 165 ~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
...+....+++|+|+|+|..|.-++..|...+.+|+++.|++
T Consensus 11 ~~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 11 HHMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp ------CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred hhhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 334455568899999999999999999999999999998765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.038 Score=51.12 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|..|+.+|..|...|.+|+++|+..
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999875
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.049 Score=49.79 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHH-HHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIG-LGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~-~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|.|||.|.+|++ +|..|.++|++|++.|+..
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4678999999999996 7888999999999999864
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.055 Score=45.89 Aligned_cols=35 Identities=17% Similarity=0.455 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+++|.|||+|..|.+.|..|.+.|.+|+++++...
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998754
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.056 Score=49.58 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
++|+|||+|..|...|..|++.|.+|+++++.
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 68999999999999999999999999999974
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.044 Score=49.35 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+++|.|||.|..|...|..|++.|++|+++|+.+.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 35899999999999999999999999999998764
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.052 Score=49.22 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=33.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..+++|.|||+|..|...|..|.+.|++|+++++...
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 55 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS 55 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3457899999999999999999999999999998653
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.064 Score=49.18 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=33.2
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|+..+...+|.|||.|..|-+.|..|.+.|.+|+++|+.+
T Consensus 2 m~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 41 (341)
T 3ktd_A 2 MTTKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR 41 (341)
T ss_dssp ----CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCccCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5545566789999999999999999999999999999865
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.048 Score=52.19 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||+|..|+..|..|++.|++|+++|+..
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 589999999999999999999999999999865
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.036 Score=48.98 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.+.|+|||||-.|...+..|.+.|.+|+|+++..
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 45789999999999999999999999999999753
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.048 Score=49.41 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||+|..|...|..|.+.|++|+++++..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 589999999999999999999999999999864
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.062 Score=48.94 Aligned_cols=35 Identities=17% Similarity=0.421 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
.+.+|+|||||..|..+|..|+..|+ +|+++|...
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 34689999999999999999999998 999999754
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.049 Score=48.96 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||+|.-|...|..|.+.|.+|+++++..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 589999999999999999999999999999864
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.12 Score=45.64 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+..|++++|||+|. .|.-+|..|...+..||+++++.
T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 193 (288)
T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT 193 (288)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 56799999999997 59999999999999999987654
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.044 Score=48.38 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
++++++|+|||+|.+|.--+..|.+.|.+|+++...
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 457899999999999999999999999999999864
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.11 Score=45.74 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCC-HHHHHHHHhcc--CCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNS-GCDIAVDASHH--SEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~s-g~d~a~~l~~~--~~~V~~~~r~~ 206 (433)
++.|++++|||.|.+ |.-+|..|... +..||+++|+.
T Consensus 155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t 194 (281)
T 2c2x_A 155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT 194 (281)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence 567999999999975 99999999999 89999987654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.071 Score=48.27 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~ 39 (433)
...+|+|||+|..|.++|..|+..|+ +++++|..
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 45789999999999999999999999 99999975
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.059 Score=51.79 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc-CC-CeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG-NI-NYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~-g~-~v~v~e~~~~ 41 (433)
..++|+|||+|.-|+..|..|++. |+ +|+++|+...
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 356899999999999999999999 99 9999998765
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.063 Score=49.03 Aligned_cols=33 Identities=21% Similarity=0.498 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
.+|+|||||..|.+.|..|+..|+ +|+++|...
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 589999999999999999999998 999999864
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.065 Score=48.77 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=31.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
....+|+|||+|..|.++|..|+..|+ +++++|...
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~ 40 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK 40 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence 345799999999999999999999887 899999753
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.066 Score=47.85 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|.|||+|..|...|..|.+.|++|+++++..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 69999999999999999999999999999865
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.18 Score=44.82 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++.|++++|||.|. .|.-+|..|...+..|++++|+.
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T 199 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT 199 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56799999999776 79999999999999999998754
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.062 Score=50.84 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+++|+|||+|..|+..|..|++ |++|+++|+...
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~ 69 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA 69 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence 35689999999999999999998 999999998653
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.065 Score=48.74 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
+++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999999998 999999863
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.066 Score=49.49 Aligned_cols=35 Identities=17% Similarity=0.423 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
...+|+|+|||.+|+.+|..|...|. +|+++|+..
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G 222 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG 222 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 34689999999999999999999999 999999864
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.065 Score=51.70 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||+|..|+..|..|++.|++|+++|+..
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4689999999999999999999999999999864
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.13 Score=45.29 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+.||+++|||.|. .|.-+|..|...+..|++++++.
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t 194 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT 194 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence 56799999999876 79999999999999999988653
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.049 Score=49.44 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=30.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc-----C-CCeEEEcc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG-----N-INYDLYEM 38 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~-----g-~~v~v~e~ 38 (433)
+.+++|.|||+|..|...|..|.+. | .+|+++++
T Consensus 6 ~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 6 QQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 4446899999999999999999998 9 99999997
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.14 Score=45.19 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++.|++++|||.|. .|.-+|..|...+..|++++++.
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 195 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT 195 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 56799999999876 79999999999999999987653
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.051 Score=51.67 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=48.5
Q ss_pred CeeecCCceeeeC----CeEEecCCceeeccEEEEccC--------CCCCCCCCCcccccc--cCCccccccccccCCCC
Q psy2398 282 DILPKDDIKNLNG----NIVHFVDDTHIEVDTIIYATG--------YNRHFPFIDKEKLEW--KLGIPDLFIHIAPRNLD 347 (433)
Q Consensus 282 ~v~~~~~v~~~~~----~~v~~~dG~~~~~D~vi~atG--------~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~p 347 (433)
+|.....|+++.. ..|.+.+|+++++|.||+|+| +.|+++-+..+.+.. ......++. .+.+..+
T Consensus 219 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~-~~~~~~~ 297 (431)
T 3k7m_X 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILI-HVRGAEA 297 (431)
T ss_dssp CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEE-EEESCCT
T ss_pred ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEE-EECCCCc
Confidence 6667788888852 246677888899999999999 888877543332221 112233333 3355568
Q ss_pred cEEEEcccc
Q psy2398 348 NIFFFGFVN 356 (433)
Q Consensus 348 ~i~~iG~~~ 356 (433)
++|+.||+.
T Consensus 298 ~i~~~~d~~ 306 (431)
T 3k7m_X 298 GIECVGDGI 306 (431)
T ss_dssp TEEEEBSSS
T ss_pred CceEcCCCC
Confidence 888888863
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.077 Score=49.93 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|..|+.++..+...|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999865
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.04 Score=52.52 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3589999999999999999999999999999876
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.17 Score=44.65 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+..||+++|||.|. .|.-+|..|...+..|++++++.
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T 195 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT 195 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC
Confidence 56799999999765 89999999999999999988653
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.068 Score=47.80 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.|||+|..|...|..|.+.|++|+++++.+
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 489999999999999999999999999999865
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.1 Score=44.45 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=30.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|+|||+|..|...|..|.+.|++|+++++..
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999864
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.083 Score=48.85 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++|+|||+|..|...|..|.+.|.+|+++++..
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.15 Score=45.22 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+..+++++|||+|. .|.-+|..|...+..||+++++.
T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 199 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT 199 (301)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc
Confidence 56799999999996 69999999999999999987553
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.099 Score=49.84 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|.|||+|.-|...|..|++.|++|+++|+..
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 87 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE 87 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence 34689999999999999999999999999999865
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.097 Score=48.99 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|..|+.++..+...|.+|+++|+..
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999865
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.08 Score=48.84 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
...+|+|+|||.+|..+|+.|...|. +|+++|+..
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G 226 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG 226 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 45799999999999999999999999 799999863
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.04 Score=43.55 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|..|...+..|.+.|.+|+++++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4689999999999999999999999999999864
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.089 Score=47.56 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||+|.-|...|..|. .|.+|+++++..
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 58999999999999999999 999999999864
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.093 Score=46.94 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|.|||+|..|...|..|+ .|++|+++|+.+
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 3579999999999999999999 999999999865
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.12 Score=45.91 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|.|+|..|...+..|.+.|.+|+++.+..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999864
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.095 Score=47.58 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=29.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~ 39 (433)
.+.+|+|||||..|.++|..|...++ ++.++|..
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 44799999999999999999998885 79999964
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.05 Score=50.82 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=30.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|++|+-+|..|++.|.+|+++.|++.
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~ 38 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 499999999999999999999999999998764
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.078 Score=48.06 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=30.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~ 39 (433)
.+++|.|||+|..|...|..|.+.|+ +|+++++.
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 45789999999999999999999999 99999985
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.11 Score=50.04 Aligned_cols=35 Identities=20% Similarity=0.455 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|.|||+|.-|...|..|++.|++|+++|+..
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34689999999999999999999999999999865
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.12 Score=46.75 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCCCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 5 NKNIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 5 ~~~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..+++|+|.|| |..|..++..|.+.|++|+++++...
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 34679999999 99999999999999999999998654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.11 Score=47.21 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=32.2
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
|+ +..+.+|+|||+|..|.+.|..|+..++ +++++|...
T Consensus 1 m~-~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~ 41 (316)
T 1ldn_A 1 MK-NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (316)
T ss_dssp CT-TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CC-CCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 55 2345799999999999999999998876 799999753
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=92.85 E-value=0.2 Score=43.94 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|++++|||.|. .|.-+|..|...+..|++++++.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t 184 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT 184 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 6799999999875 79999999999999999987653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=92.79 E-value=0.083 Score=50.89 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~ 40 (433)
.+++|+|||+|..|+..|..|++. |++|+++|+..
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 346899999999999999999998 79999999864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.1 Score=49.78 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=32.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..++.|||.|.-|+..|..|++.|++|+++|+...
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35899999999999999999999999999998765
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.14 Score=46.40 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++|.|||+|..|...|..|.+.|++|+++++..
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.079 Score=49.25 Aligned_cols=34 Identities=32% Similarity=0.243 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+.|+|||+|..|++.|..+++.|.+|.++.+++.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~ 35 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK 35 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 4699999999999999999999999999998763
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.12 Score=48.77 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...+|+|||+|..|..+|..|.+.|++|+++|+.+.
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~ 38 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD 38 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 346899999999999999999999999999998653
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.11 Score=47.28 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|.|||+|..|...|..|.+.|++|+++++..
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 34689999999999999999999999999999864
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.12 Score=44.96 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|.|||+|..|.+.|..|.+.|++|+++++..
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 34789999999999999999999999999999864
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=92.55 E-value=0.16 Score=48.13 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=32.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...++|+|||+|..|...+..+++.|++|+++|..+.
T Consensus 33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~ 69 (419)
T 4e4t_A 33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA 69 (419)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 3457899999999999999999999999999986543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.12 Score=49.71 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|.|||+|..|...|..|++.|++|+++|+..
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4679999999999999999999999999999864
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.1 Score=46.59 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|.|||+|..|...|..|.+.|++|+++++...
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE 35 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5799999999999999999999999999998753
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.074 Score=45.48 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEE-EccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDL-YEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v-~e~~~ 40 (433)
+++|.|||+|..|.+.|..|.+.|++|++ +++..
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~ 57 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP 57 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 46899999999999999999999999998 78754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.11 Score=45.45 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
.+|+|||+|-.|..+|..|.+.|+ +++++|+..
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 589999999999999999999998 899999864
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.069 Score=50.62 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 369999999999999999999999999999875
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=92.42 E-value=0.17 Score=47.20 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+++|+|||+|..|..++..+++.|++|+++|..+.
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~ 46 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED 46 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 457899999999999999999999999999997654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=92.39 E-value=0.13 Score=47.72 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|+|+|..|..++..|+..|.+|+++++..
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.15 Score=45.49 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=31.2
Q ss_pred CCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++|.|||+ |..|...|..|.+.|++|+++++..
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~ 45 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP 45 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 368999999 9999999999999999999999864
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.12 Score=46.52 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
+|+|||||..|.+.|..|+..|+ +|+++|...
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 79999999999999999999998 899999753
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=92.31 E-value=0.1 Score=49.85 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||+|..|+..|..|++.|++|+++|+..
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.14 Score=46.24 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
++|+|||||..|...|..|+..|+ +++++|...
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 589999999999999999999987 899999754
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.11 Score=46.61 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|.|||+|..|...|..|.+.|++|+++++..
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 37 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME 37 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 34689999999999999999999999999999754
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.12 Score=45.65 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~ 40 (433)
+++|.|||+|..|...|..|.+.|++ |.++++..
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~ 44 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE 44 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 46899999999999999999999999 89999764
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.14 Score=46.98 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|.|||+|.-|...|..|.+.|.+|+++++..
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~ 47 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK 47 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3689999999999999999999999999999853
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.11 Score=44.27 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=31.8
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|+|.|| |..|...+..|.+.|.+|+++.+..
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 3578999996 9999999999999999999999874
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.15 Score=47.18 Aligned_cols=34 Identities=24% Similarity=0.547 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++|.|||.|..|...|..|.+.|++|+++++..
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4789999999999999999999999999999865
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.14 Score=46.55 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++|+|||+|.-|...|..|++.|.+|+++ +++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~ 51 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP 51 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence 468999999999999999999999999999 653
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.17 Score=45.98 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
+.+|+|||||..|.++|..|+..|+ +++++|...
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4689999999999999999999998 999999764
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.092 Score=49.29 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=30.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus 6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHTF 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999999999998753
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.081 Score=50.14 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence 369999999999999999999999999999875
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.13 Score=49.62 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~ 40 (433)
+++|+|||+|..|+..|..|++. |++|+++|+..
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 46899999999999999999998 78999999754
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.08 Score=49.34 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 479999999999999999999999999999864
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.79 E-value=0.22 Score=44.67 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCcEEEEC-CChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIG-GGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIG-aG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.+|.||| +|..|.+.|..|.+.|++|+++++..
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 35899999 99999999999999999999999764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.17 Score=47.03 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|+|+|..|..+|..|+..|.+|+++|+..
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4689999999999999999999999999999764
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.094 Score=48.41 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 369999999999999999999999999999874
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.24 Score=47.31 Aligned_cols=52 Identities=8% Similarity=-0.066 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 91 YLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 91 ~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
..+.+++.++. .++++++|++|..++++ +.|++ ++.++.||+||+|++....
T Consensus 217 l~~~l~~~lg~--~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~ 269 (453)
T 2yg5_A 217 VSIRMAEALGD--DVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLY 269 (453)
T ss_dssp HHHHHHHHHGG--GEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGG
T ss_pred HHHHHHHhcCC--cEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHH
Confidence 34445555554 69999999999988777 88876 5678999999999997543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.62 E-value=0.18 Score=44.79 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
++|.|||+|..|.+.|..|.+.|+ +|+++++..
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 36 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 479999999999999999999998 899999764
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.58 E-value=0.15 Score=46.07 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcC--CCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN--INYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~ 40 (433)
++|+|||+|..|.+.|..|.+.| .+|+++|+..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 48999999999999999999998 5899999853
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.21 Score=45.29 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
+.+|+|||+|..|.++|..|+..++ +++++|...
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 4689999999999999999999888 999999764
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.15 Score=45.37 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.|||+|..|...|..|.+ |++|+++++..
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 479999999999999999999 99999999864
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.16 Score=45.18 Aligned_cols=34 Identities=18% Similarity=0.008 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++|+|.|||..|-..+..|.+.|++|+++.+..
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 3689999999999999999999999999999864
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.083 Score=50.73 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|+|+|-.|...|..|.+.|++|+++|+.+
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3689999999999999999999999999999865
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.18 Score=46.99 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|..|..+|..++..|.+|+++|+..
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.15 Score=46.27 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcC-CCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN-INYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~ 40 (433)
++|.|||+|..|...|..|.+.| ++|+++++..
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 58999999999999999999999 9999999864
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.091 Score=49.07 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhcc--CCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~--~~~V~~~~r~~~ 207 (433)
++|+|||+|.+|+-+|..|++. |.+|+++.+++.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3699999999999999999998 999999998764
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.21 Score=45.16 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++|+|+|| |..|...+..|.+.|.+|+++.|..
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCC
Confidence 358999997 9999999999999999999999864
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.22 Score=43.84 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++++|||+|-+|-+++..|.+.|.+|+|+.|..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999865
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.079 Score=49.18 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp EEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 69999999999999999999999999999875
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.43 E-value=0.16 Score=40.49 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++++|+|+|..|..++..|.+.+.+|+++.+++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 5689999999999999999999999999998764
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=91.43 E-value=0.17 Score=45.51 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=30.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
.+.+|+|||||..|...|..|...|+ +++++|...
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 35789999999999999999999888 899999754
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.15 Score=47.49 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcC-------CCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN-------INYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g-------~~v~v~e~~~~ 41 (433)
++|+|||+|.-|.+.|..|++.| .+|+++++...
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence 57999999999999999999999 99999998654
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=91.42 E-value=0.22 Score=47.94 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+++|.|||.|..|...|..|.+.|++|+++++...
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS 38 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357899999999999999999999999999998753
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.095 Score=50.89 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++|+|||+|.+|+..|..|.+.|.+|+++.+++
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~ 66 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5689999999999999999999999999999875
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.1 Score=48.65 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 5 dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~ 36 (389)
T 2gf3_A 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (389)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 69999999999999999999999999999875
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.12 Score=47.85 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 479999999999999999999999999999864
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.19 Score=45.37 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhc--CCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEG--NINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~ 40 (433)
+|+|||+|..|.+.|..|++. +.+|+++|+..
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 699999999999999999985 67999999864
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.14 Score=48.14 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||+|..|+..|..|++ |++|+++|+..
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 69999999999999999999 99999999864
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.33 E-value=0.16 Score=46.44 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEcc
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEM 38 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~ 38 (433)
+|+|||+|..|...|..|.+.|++|+++++
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 699999999999999999999999999998
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.25 Score=44.77 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
++|.|||+|..|-+.|..|.+.|+ +|+++|+.+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 689999999999999999999999 899999865
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=91.19 E-value=0.09 Score=45.37 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=29.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...+|+|+|+|..|...|..|.+.|+ |+++|+.+
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~ 41 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDEN 41 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence 34689999999999999999999999 99999864
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.067 Score=45.90 Aligned_cols=35 Identities=9% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
...++|.|||+|..|-+.|..|.+.|++|+.+++.
T Consensus 4 ~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~ 38 (232)
T 3dfu_A 4 APRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP 38 (232)
T ss_dssp CCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred CCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence 34568999999999999999999999999999874
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.2 Score=42.38 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=29.6
Q ss_pred cEEEEC-CChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIG-GGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIG-aG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+||| +|..|...|..|.+.|++|+++++..
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 699999 99999999999999999999999864
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=0.45 Score=45.95 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC---cEEEeCEEEEccCCC
Q psy2398 90 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 90 ~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g---~~~~~d~vIvAtG~~ 143 (433)
.+.+.+++.++- .+|+++++|++|+.++++++|++.++ .++.||+||+|++..
T Consensus 240 ~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~ 295 (489)
T 2jae_A 240 RIYYAFQDRIGT-DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH 295 (489)
T ss_dssp HHHHHHHHHHCG-GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred HHHHHHHHhcCC-CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence 344445555441 36999999999999888999998876 579999999999864
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.13 Score=48.54 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCc-EEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~~ 207 (433)
..|+|||+|.+|+-+|..|++.|.+ |+++.|++.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 39 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 4799999999999999999999999 999999864
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.22 Score=47.75 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
..++|+|||+|..|...+..|.+.|.+|+|+++.
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 3478999999999999999999999999999975
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.36 Score=45.64 Aligned_cols=53 Identities=4% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
+.++.+..++.++. .++++++|++|+.+++++.|++.+|+ +.||.||+|++..
T Consensus 205 ~~~l~~~l~~~l~~--~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~ 257 (424)
T 2b9w_A 205 TQAMFEHLNATLEH--PAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE 257 (424)
T ss_dssp HHHHHHHHHHHSSS--CCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred HHHHHHHHHHhhcc--eEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence 34555556666553 58899999999988778999988875 8999999999984
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=91.04 E-value=0.23 Score=43.90 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+.++|+|+|-.|.++|..|.+.|.+|+++++..
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4689999999999999999999999999998763
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.15 Score=45.83 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=28.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+|.+||-|.-|...|..|.+.|++|+++|+.+.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~ 39 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS 39 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998764
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=0.22 Score=45.17 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
....+|+|||+|..|.++|..|+..++ +++++|...
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 44 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK 44 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 345799999999999999999999888 899999743
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.11 Score=48.42 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 369999999999999999999999999999874
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.13 Score=47.75 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
...+|+|||+|.+|+-.|..|.+.|.+|+++.++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~ 76 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN 76 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence 3568999999999999999999999999999987
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.12 Score=50.25 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHhcc-CCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~-~~~V~~~~r~~ 206 (433)
.|+|||||.+|+-.|..|++. |.+|+++.+++
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~ 44 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 699999999999999999985 99999999886
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=90.85 E-value=0.23 Score=44.58 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
.++++|||+|..|.++|..|.+.|. +|++++|..
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4689999999999999999999998 899999863
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.83 E-value=0.19 Score=45.09 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.|||+|..|...|..|.+.|++|+++++..
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 38 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 38 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 489999999999999999999999999999764
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.23 Score=46.77 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|+|+|+|..|...+..+.+.|++|+++| .+
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~ 56 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD 56 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence 35799999999999999999999999999999 44
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.79 E-value=0.2 Score=45.57 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
+|+|||+|..|.+.|..|.+.|+ +|+++|+..
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~ 35 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 69999999999999999999998 999999753
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.27 Score=47.53 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+|.|||+|.-|...|..|++.|++|+++++..
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~ 43 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ 43 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 689999999999999999999999999999865
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.29 Score=42.52 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC----CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI----NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~----~v~v~e~~~ 40 (433)
++|.|||+|..|...|..|.+.|+ +|+++++.+
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT 39 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence 589999999999999999999998 999999864
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=0.34 Score=41.77 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=33.3
Q ss_pred CCCCCCCCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 1 MKYKNKNIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 1 M~~~~~~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|.|.-..+.++|.|| |..|..++..|++.|.+|+++++..
T Consensus 1 M~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~ 41 (244)
T 3d3w_A 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CccccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 554445578999998 7999999999999999999998753
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=90.69 E-value=0.51 Score=45.34 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=36.6
Q ss_pred ceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCC
Q psy2398 104 HSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 104 ~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
+++++++|++|+.++++++|++.+|+++.+|+||+|++..
T Consensus 230 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~ 269 (472)
T 1b37_A 230 RLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLG 269 (472)
T ss_dssp TEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHH
T ss_pred EEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHH
Confidence 6999999999999888899999998889999999999974
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.25 Score=44.87 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
..+|+|||+|-.|..+|..|...|+ +++++|...
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 4689999999999999999999999 799999753
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=90.62 E-value=0.12 Score=47.87 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+.|+|||+|.+|+-+|..|+ .|.+|+++.+++
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~ 41 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA 41 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence 467999999999999999999 599999999874
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=0.24 Score=44.30 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|.|||+|..|...|..|.+.|++|+++++..
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~ 33 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP 33 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 69999999999999999999999999999864
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.2 Score=44.70 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
..+|+|||+|-.|..+|..|++.|+ +++++|...
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 3689999999999999999999998 799999753
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.56 E-value=0.26 Score=44.28 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|.|||+|..|..+|..|...|.+|+++++..
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~ 190 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS 190 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34689999999999999999999999999999863
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.26 Score=44.11 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|.|||+|..|..+|..|+..|.+|+++++..
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 34689999999999999999999999999999863
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.53 E-value=0.25 Score=43.77 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|.|||+|..|.+.|..|.+.|++|+++++..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 33 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999764
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=90.50 E-value=0.13 Score=48.30 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhc-cC-CcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASH-HS-EKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~-~~-~~V~~~~r~~ 206 (433)
..|+|||+|.+|+-+|..|++ .| .+|+++.+.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 89 8999999875
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=90.47 E-value=0.39 Score=45.66 Aligned_cols=56 Identities=7% Similarity=-0.045 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
..+.+.+.+.++..|. .++++++|++|..+++++.....+|+++.||.||+|+|.+
T Consensus 234 ~~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~ 289 (433)
T 1d5t_A 234 GELPQGFARLSAIYGG--TYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYV 289 (433)
T ss_dssp THHHHHHHHHHHHHTC--CCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCC--EEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCC
Confidence 4566667777777776 5899999999998877766444577789999999999984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 433 | ||||
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 3e-17 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 9e-16 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 1e-14 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 4e-11 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 8e-09 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 3e-04 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 9e-06 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 5e-05 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 0.001 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 0.001 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 0.002 | |
| d1i8ta1 | 298 | c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu | 0.003 |
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 79.5 bits (195), Expect = 3e-17
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 11/150 (7%)
Query: 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFN 67
+ + ++G G G+ L E + + E D+GGVW YP
Sbjct: 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW-----NRYPGARCDIESIE 62
Query: 68 TQVPDYPMPDNYPVYP----NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE--QYEDIW 121
+ + +L Y+ A KFD+ + F+T V + + W
Sbjct: 63 YCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 122
Query: 122 EVELSNGKKKKYDFIAVCNGAQRVARYPNY 151
V+ ++G + + ++ + +G A
Sbjct: 123 TVDTNHGDRIRARYLIMASGQLSDALTGAL 152
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 75.8 bits (185), Expect = 9e-16
Identities = 43/254 (16%), Positives = 70/254 (27%), Gaps = 60/254 (23%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYD--LYEMESDLGGVWN------------------- 47
K+ IIG GP G+ + L L+E GGVWN
Sbjct: 6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 65
Query: 48 ---------SQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 98
+Y L +P D +P+ + +Y R YA+
Sbjct: 66 TEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQP 125
Query: 99 FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKK------YDFIAVCNGAQRVARYPNYS 152
+ T+V+++E+ + W V K +D +++CNG V
Sbjct: 126 LLPFIK--LATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLY 183
Query: 153 GY---------------------FSGEILHSMDYKSPDQI-RNKRVLVVGAGNSGCDIAV 190
H P + VV S A
Sbjct: 184 SVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAF 243
Query: 191 DASHHSEKVYHSTR 204
A S ++ ++
Sbjct: 244 LARVWSGRLKLPSK 257
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 67.3 bits (164), Expect = 1e-14
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 150 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHY 209
Y+ G +LHS ++ P+ + VLVVG +S D+ + ++ + + G
Sbjct: 9 EYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD 68
Query: 210 YP 211
Sbjct: 69 IQ 70
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 60.6 bits (145), Expect = 4e-11
Identities = 30/236 (12%), Positives = 70/236 (29%), Gaps = 65/236 (27%)
Query: 145 VARYPNYSGY--FSGEILHSMDY-KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH 201
V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + + +++
Sbjct: 1 VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV 60
Query: 202 STRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKP-- 259
R + P +EE+ + G +
Sbjct: 61 FQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELV 120
Query: 260 -------------------------------------------------DHPLDAAHPIM 270
+ + +P
Sbjct: 121 ETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFG 180
Query: 271 NSQILYHIGHGDILPKD----------DIKNLNGNIVHFVDDTHIEVDTIIYATGY 316
+++ I + ++ +D I+ + V + E+D+++ ATG+
Sbjct: 181 TKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRT-SEREYELDSLVLATGF 235
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 54.0 bits (128), Expect = 8e-09
Identities = 22/173 (12%), Positives = 49/173 (28%), Gaps = 11/173 (6%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEME----SDLGGVWNSQASCGRVYPSLHLISP 64
++ ++GG G+ L + ++ D+YE S G Q +
Sbjct: 6 RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELD 65
Query: 65 KFNTQVPDYPMPD-------NYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY 117
+ D D + + + ++ L Q
Sbjct: 66 SISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQD 125
Query: 118 EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQ 170
+ ++ S+G K + +++ +G V R ++H D
Sbjct: 126 SETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIETVDRMVHGRVLLIGDA 178
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 39.7 bits (91), Expect = 3e-04
Identities = 30/211 (14%), Positives = 53/211 (25%), Gaps = 16/211 (7%)
Query: 173 NKRVLVVGAGNSGCDIAVDASHH---------SEKVYHSTRRGYHYYPKFIDGKPTPQWM 223
R+ VVG SG A+ S + G P ++
Sbjct: 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQP------ELVHYL 57
Query: 224 LQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDI 283
L+ G + S + ++ V L G D+ + + H
Sbjct: 58 LEQGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSK 117
Query: 284 LPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAP 343
++ + F D T E + +I A G + + I
Sbjct: 118 CLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIETVDRMVHGRVLLIGD 177
Query: 344 RNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 374
+ A D L F ++
Sbjct: 178 AAVTPRPHAA-AGGAKASDDARTLAEVFTKN 207
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (101), Expect = 9e-06
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 17/174 (9%)
Query: 145 VARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 204
V R P G ++L +D +V ++G G G D A+ S E +
Sbjct: 1 VPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIA 60
Query: 205 RGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLD 264
F + + Q G + +Q+ + KP L
Sbjct: 61 G-------FCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIV------MLQRKASKPGQGLG 107
Query: 265 AAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTH---IEVDTIIYATG 315
++ L G ++P + ++ + +H V + + VD ++ G
Sbjct: 108 KTTGWIHRTTLLSRG-VKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG 160
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 42.1 bits (97), Expect = 5e-05
Identities = 25/222 (11%), Positives = 52/222 (23%), Gaps = 40/222 (18%)
Query: 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLH 60
+ + I+G GP G R L E L + +GG N A+
Sbjct: 43 FRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAAL-------- 94
Query: 61 LISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI 120
+ + + L + +
Sbjct: 95 ------------PGLGEWSYHRDYRETQITKLL---------------KKNKESQLALGQ 127
Query: 121 WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVG 180
+ + + D + + GA + S + + L+
Sbjct: 128 KPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIAD 187
Query: 181 AGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 222
A +G +A + + ++ +R G P
Sbjct: 188 ATFTGHRVAREIEEANPQIAIPYKR-----ETIAWGTPHMPG 224
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 38.6 bits (89), Expect = 0.001
Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 15/166 (9%)
Query: 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK 65
K+ K+ I+G G G +GR+L+E + + +GG +
Sbjct: 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD------------ARDSE 48
Query: 66 FNTQVPDY---PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE 122
N V Y + N+ + Y + + + INL +
Sbjct: 49 TNVMVHVYGPHIFHTDNETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFS 108
Query: 123 VELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSP 168
S + + + + + F G+ L+ +K
Sbjct: 109 KTCSPDEARALIAEKGDSTIADPQTFEEEALRFIGKELYEAFFKGY 154
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 37.5 bits (86), Expect = 0.001
Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 45/183 (24%)
Query: 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK 65
+ L ++G GP G+ + L++ S++GG +N
Sbjct: 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN------------------ 83
Query: 66 FNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 125
+ P L Y R + V N V +Q + E L
Sbjct: 84 ---------IAKQIPGKEEFYETLRYYRRMIEVTGVTLK--LNHTVTA-DQLQAFDETIL 131
Query: 126 SNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSG 185
++G + + + + V G +M+ + R +
Sbjct: 132 ASGIPNRALAQPLIDSGKTVHLI--------GGCDVAME-------LDARRAIAQGTRLA 176
Query: 186 CDI 188
+I
Sbjct: 177 LEI 179
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 36.9 bits (84), Expect = 0.002
Identities = 20/138 (14%), Positives = 38/138 (27%), Gaps = 5/138 (3%)
Query: 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLH 60
M Y + +IGGGP G+ +E N L + + LG +
Sbjct: 1 MHYD-----VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRL 55
Query: 61 LISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI 120
+ + + N+ ++ + + K +H + D
Sbjct: 56 PLDEIVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDA 115
Query: 121 WEVELSNGKKKKYDFIAV 138
L + K V
Sbjct: 116 LLTRLKDLGVKIRTNTPV 133
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (85), Expect = 0.003
Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 2/129 (1%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG-VWNSQASCGRVYPS-LHLISPKF 66
I+G G G EL + N + E + +GG + +++ H+
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62
Query: 67 NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS 126
+ + N + + + + F++ E I +
Sbjct: 63 KYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKK 122
Query: 127 NGKKKKYDF 135
G K +
Sbjct: 123 YGDKVPENL 131
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 433 | |||
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.97 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.91 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.73 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.73 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.73 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.66 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.65 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.62 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.6 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.59 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.59 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.57 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.56 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.52 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.51 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.49 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.49 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.45 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.45 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.44 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.43 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.42 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.41 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.41 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.39 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.39 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.38 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.37 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.37 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.34 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 99.34 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.33 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.33 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.33 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.33 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.33 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.32 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.31 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.31 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.31 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.3 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.28 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.27 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.26 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.26 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.26 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.24 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.24 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.23 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.22 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.21 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.2 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.2 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.19 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.19 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.18 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.17 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.17 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.16 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 99.16 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.16 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.14 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 99.14 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 99.13 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.13 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.13 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.13 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.11 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.1 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.1 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.09 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.06 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.06 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.05 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.04 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.03 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.03 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.03 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.03 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.01 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 99.01 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.99 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.96 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.95 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.93 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.93 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.92 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.92 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.91 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.9 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.87 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.86 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.86 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.86 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.86 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.85 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.85 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.83 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.83 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.81 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.81 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.79 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.78 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.77 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.75 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.72 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.71 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.7 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.7 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.68 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.65 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.65 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 98.57 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.55 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.53 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.52 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.51 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.46 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.43 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 98.37 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.37 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.31 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.24 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.16 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.13 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.13 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.13 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 98.1 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.09 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.06 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 98.05 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 97.99 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.95 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.91 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 97.84 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.68 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.63 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.51 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.46 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.46 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.38 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.38 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.36 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.35 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.34 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.3 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.3 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.22 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.15 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.01 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.0 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.89 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.69 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.62 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.57 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.52 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.46 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.44 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.39 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.36 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.34 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.29 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.26 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.25 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.23 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.14 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.09 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.04 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.92 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.89 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.83 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.82 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.81 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.81 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.65 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.62 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.57 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.55 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.4 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.38 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.36 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 95.31 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.29 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.19 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.17 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.11 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.08 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.06 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.74 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.73 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.72 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 94.69 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 94.6 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 94.59 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 94.56 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 94.49 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 94.49 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 94.46 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 94.43 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.38 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.27 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 94.21 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.15 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 94.08 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 94.03 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.0 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 93.87 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.85 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 93.84 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.81 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 93.81 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 93.79 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.73 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 93.69 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 93.69 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 93.66 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 93.64 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.62 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.56 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.54 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.52 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.44 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.43 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.41 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 93.34 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.31 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 93.21 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.19 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 93.14 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.13 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.11 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 92.91 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.85 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 92.75 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 92.49 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.45 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.38 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 92.34 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.29 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.15 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 92.13 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.04 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 91.86 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.85 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 91.77 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 91.65 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 91.6 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 91.43 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.16 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 91.03 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.97 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 90.95 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.91 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 90.69 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 90.67 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 90.65 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 90.41 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 90.34 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.28 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.21 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.15 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 90.0 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.93 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 89.9 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 89.62 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 89.61 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 89.5 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 89.42 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 89.3 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 89.24 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 89.22 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 89.18 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.07 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 89.02 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.02 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 88.93 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 88.66 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 88.63 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 88.54 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 88.49 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 88.49 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 88.2 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 88.08 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 87.99 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 87.57 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.19 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 86.97 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 86.97 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 86.92 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 86.85 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 86.79 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 86.65 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 86.56 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 86.37 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 86.15 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 86.03 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.99 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 85.84 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 85.76 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.64 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 85.29 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 85.26 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 85.23 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 85.22 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 85.03 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 84.79 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 84.73 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 84.36 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 84.36 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 84.35 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 83.63 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 83.35 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 83.32 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 83.29 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 83.17 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 82.99 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 82.95 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 82.92 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 82.87 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 82.85 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 82.78 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 82.62 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 82.57 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 82.45 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 82.19 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 82.14 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 81.93 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 81.52 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 81.48 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 81.4 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 81.29 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 81.29 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 81.21 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 81.15 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 81.15 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 81.1 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 80.85 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 80.77 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 80.69 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 80.49 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 80.41 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 80.25 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 80.21 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 80.16 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 80.1 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 80.03 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 80.01 |
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.97 E-value=1.2e-30 Score=242.66 Aligned_cols=145 Identities=25% Similarity=0.416 Sum_probs=126.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCC----------------------------CCcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQAS----------------------------CGRV 55 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~----------------------------~~~~ 55 (433)
.+++|+|||||+|||++|..|++.+ .+|+||||++.+||+|.+... .+.+
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 82 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 82 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence 5689999999999999999998876 499999999999999987541 2456
Q ss_pred ccceEeecCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc------
Q psy2398 56 YPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK------ 129 (433)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~------ 129 (433)
|+.+..+.+..++.+++.+.+.+.+.|+++.++.+|+..+++.++. +|+|+++|++|+.++++|+|++.++.
T Consensus 83 y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~--~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~ 160 (335)
T d2gv8a1 83 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 160 (335)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhh--cccCceEEEEEEecCCEEEEEEEecCCCCeEE
Confidence 7778888888888899999999999999999999999999998764 79999999999999999999987532
Q ss_pred EEEeCEEEEccCCCCCCCCCCCC
Q psy2398 130 KKKYDFIAVCNGAQRVARYPNYS 152 (433)
Q Consensus 130 ~~~~d~vIvAtG~~s~p~~p~i~ 152 (433)
+..||+||+|||.++.|.+|.+.
T Consensus 161 ~~~~d~VI~AtG~~s~p~~~~~~ 183 (335)
T d2gv8a1 161 KDIFDAVSICNGHYEVPYTGYLY 183 (335)
T ss_dssp EEEESEEEECCCSSSSBCCCBCC
T ss_pred EEEeeEEEEcccccccceecccc
Confidence 35799999999999999888764
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.91 E-value=2.5e-25 Score=201.43 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=128.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCC----CCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMP----DNYP 80 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 80 (433)
++..||+|||||++||++|++|++.|++|+|||+.+.+||+|..+ .|+++.++++...+.++..+.+ .+..
T Consensus 5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n-----~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~ 79 (298)
T d1w4xa1 5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN-----RYPGARCDIESIEYCYSFSEEVLQEWNWTE 79 (298)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-----CCTTCBCSSCTTTSSCCSCHHHHHHCCCCB
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccC-----CCCCceeccccccccccccccccCCCCCcc
Confidence 455799999999999999999999999999999999999999876 4888888888888777765532 4555
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG 153 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g 153 (433)
.++.+.++.+|++.+++++++..+|+|+++|+++.++ .+.|+|++.++.++++|+||+|||..+.|.+|.+++
T Consensus 80 ~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~ 154 (298)
T d1w4xa1 80 RYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFK 154 (298)
T ss_dssp SSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHT
T ss_pred ccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccc
Confidence 6888999999999999999998899999999999986 578999999999999999999999999999998776
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.73 E-value=8.6e-21 Score=165.94 Aligned_cols=166 Identities=17% Similarity=0.101 Sum_probs=104.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
...++|+||||||+||++|..|+++|++|+|+|+.+.+||.|..... . +.+..
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~----~-----------------------~~~~~ 99 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA----L-----------------------PGLGE 99 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT----S-----------------------TTCGG
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccc----c-----------------------ceeec
Confidence 34589999999999999999999999999999999999999886410 0 01111
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceecc
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHS 162 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~ 162 (433)
......+......++... ..... +. .+...++..+...+.||+||+|||+ .+..|.+++ .......+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~---~~~~~---~~--~~~~~~~~~~~~~~~~d~vviAtG~--~~~~~~~~~~~~~~~~~~~~ 169 (233)
T d1djqa3 100 WSYHRDYRETQITKLLKK---NKESQ---LA--LGQKPMTADDVLQYGADKVIIATGA--SECTLWNELKARESEWAEND 169 (233)
T ss_dssp GGHHHHHHHHHHHHHHTT---CTTCE---EE--CSCCCCCHHHHHTSCCSEEEECCCE--ECCHHHHHHHHTTHHHHHTT
T ss_pred ccccchhHHHHHHHHhhc---ceeee---ee--cccccccchhhhhhccceeeeccCC--Ccccccccccccccccchhh
Confidence 122223333333322111 00111 11 1111122222234789999999998 445444333 111112222
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 163 ~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..........+++++|+|+|.+|+|+|.+|++.+.+|++++|++.
T Consensus 170 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~ 214 (233)
T d1djqa3 170 IKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRET 214 (233)
T ss_dssp CCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred hhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEeccc
Confidence 222222234578999999999999999999999999999999875
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=5e-19 Score=145.71 Aligned_cols=133 Identities=19% Similarity=0.300 Sum_probs=101.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|+||||||+||+||..|+++|++|+|||+.+.+||.+.... ..+.+..
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~---------------------------~~p~~~~ 93 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK---------------------------QIPGKEE 93 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT---------------------------TSTTCTT
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEE---------------------------eCcccch
Confidence 3468999999999999999999999999999999999999876420 0123445
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 164 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~ 164 (433)
..++.+++...++++++ ++++++.|+. + ....||.||+|||. .|+.+.+++.
T Consensus 94 ~~~~~~~~~~~~~~~gV--~i~l~~~Vt~-------------~-~~~~~d~vilAtG~--~~~~~~~pg~---------- 145 (179)
T d1ps9a3 94 FYETLRYYRRMIEVTGV--TLKLNHTVTA-------------D-QLQAFDETILASGI--PNRALAQPLI---------- 145 (179)
T ss_dssp HHHHHHHHHHHHHHHTC--EEEESCCCCS-------------S-SSCCSSEEEECCCE--ECCTTHHHHH----------
T ss_pred HHHHHHHHHHhhhcCCe--EEEeCCEEcc-------------c-ccccceeEEEeecC--CCcccccchh----------
Confidence 57888899999999998 5889887632 1 12579999999998 6777666651
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHH-HHHHhccCCc
Q psy2398 165 YKSPDQIRNKRVLVVGAGNSGCDI-AVDASHHSEK 198 (433)
Q Consensus 165 ~~~~~~~~~~~v~VvG~G~sg~d~-a~~l~~~~~~ 198 (433)
-.+++++|+|+|.+++|+ +......|.+
T Consensus 146 ------~~g~~v~vigggd~a~~~~~~~Av~~G~~ 174 (179)
T d1ps9a3 146 ------DSGKTVHLIGGCDVAMELDARRAIAQGTR 174 (179)
T ss_dssp ------TTTCCEEECGGGTCCSSCCHHHHHHHHHH
T ss_pred ------ccCCEEEEECCcHhhhhccchhhhhccCE
Confidence 037889999999999987 3333333433
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.73 E-value=3.6e-17 Score=142.85 Aligned_cols=70 Identities=24% Similarity=0.497 Sum_probs=64.2
Q ss_pred CCCCCCCCC--CCCCceeccCCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccC
Q psy2398 145 VARYPNYSG--YFSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI 214 (433)
Q Consensus 145 ~p~~p~i~g--~~~g~~~~~~~~~-~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~ 214 (433)
.|++|++|| .|.|.++||.+|. +..+++||+|+|||+|.||+|+|.++++.+++++++.|++.+..++..
T Consensus 1 vP~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (235)
T d1w4xa2 1 VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARN 73 (235)
T ss_dssp CCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCC
T ss_pred CCCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccceeeeecc
Confidence 389999999 9999999999995 567899999999999999999999999999999999999988877654
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.66 E-value=1.2e-16 Score=138.18 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=41.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
+.|||+||||||+|+++|..+++.|.+|+|||+...+||.|...
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~ 45 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV 45 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence 56999999999999999999999999999999999999988754
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.65 E-value=1.2e-16 Score=120.54 Aligned_cols=60 Identities=27% Similarity=0.411 Sum_probs=54.0
Q ss_pred CCCCCC------CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 148 YPNYSG------YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 148 ~p~i~g------~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|.+|| .|+|.++||..|+++.+|+||+|+|||+|.||+|+|.+|++.+++++++.|++.
T Consensus 1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG 66 (107)
T ss_dssp BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence 467777 356999999999999999999999999999999999999999999888887763
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.62 E-value=6.5e-16 Score=136.23 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=91.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC------CCccccceEeecC---------------CC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS------CGRVYPSLHLISP---------------KF 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~------~~~~~~~~~~~~~---------------~~ 66 (433)
+||+|||||++|++||..|+++|++|+|+||.+.+|+.+..... .......+....+ ..
T Consensus 3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T d2i0za1 3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED 82 (251)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHH
Confidence 89999999999999999999999999999999988754321100 0000000000000 00
Q ss_pred ccc-CCCCCCC-------CCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEEccCcEEEeCEEE
Q psy2398 67 NTQ-VPDYPMP-------DNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIA 137 (433)
Q Consensus 67 ~~~-~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g~~~~~d~vI 137 (433)
... +.....+ ...+......++.+.+.+.+++.++ .++++++|+.|..+++.+ .|.+++++++++|+||
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv--~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI 160 (251)
T d2i0za1 83 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV--KIRTNTPVETIEYENGQTKAVILQTGEVLETNHVV 160 (251)
T ss_dssp HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEETTEEEEEEETTCCEEECSCEE
T ss_pred HHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCC--cccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEE
Confidence 000 0000000 0011223457788888888988888 599999999999886665 4788889899999999
Q ss_pred EccCCCCCCC
Q psy2398 138 VCNGAQRVAR 147 (433)
Q Consensus 138 vAtG~~s~p~ 147 (433)
+|||.+|.|+
T Consensus 161 ~AtGg~S~p~ 170 (251)
T d2i0za1 161 IAVGGKSVPQ 170 (251)
T ss_dssp ECCCCSSSGG
T ss_pred EccCCccccc
Confidence 9999977554
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.60 E-value=1.9e-15 Score=124.37 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=101.4
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh-hchh-hcCchHHHHHHHHHHHHhcCCCC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ-LGNK-FSSKEETMAYIKQVFKLAGFDGV 252 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~-~p~~-~~~~~~~~~~~~~~~~~~~~~~~ 252 (433)
+|+|||+|.+|+|+|..|.+ +.+||++.|++.....+. ........ ++.. +..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------------------- 56 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKP----MLSHYIAGFIPRNRLFP-------------------- 56 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCST----THHHHHTTSSCGGGGCS--------------------
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccccc----chhhhhhhhhhhhhhhH--------------------
Confidence 79999999999999999976 668999998764221110 00000000 0000 000
Q ss_pred cCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee-CCeEEecCCceeeccEEEEccCCCCCCCCCCccccccc
Q psy2398 253 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN-GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK 331 (433)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~-~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~~~~ 331 (433)
...++.... .-++.....++.++ +..+.+.+|.++++|.+|+|+|.+|+ +++...++...
T Consensus 57 -----------------~~~~~~~~~-~v~~~~~~~v~~i~~~~~~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~ 117 (167)
T d1xhca1 57 -----------------YSLDWYRKR-GIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG 117 (167)
T ss_dssp -----------------SCHHHHHHH-TEEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEECC-HHHHHTTCCBS
T ss_pred -----------------HHHHHHHhc-cceeeeeccccccccccccccccccccccceeEEEEEecCC-chhhhcCceeC
Confidence 001111110 00233345677775 34577888889999999999999875 56554555543
Q ss_pred CCccccccccccCCCCcEEEEccccccC----ChhhHHHHHHHHHHHHHhhh
Q psy2398 332 LGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 332 ~~~~~~~~~~~~~~~p~i~~iG~~~~~~----~~~~~a~~qa~~~a~~i~g~ 379 (433)
. .+.+ +..+.++.|+||++|||+... +..+.+..||+.+|++|.|+
T Consensus 118 ~-~i~v-~~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 118 R-GILI-DDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 167 (167)
T ss_dssp S-SEEC-CTTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred C-ceee-ccccEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHHHcCCC
Confidence 3 3444 445578899999999997532 35678999999999999884
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.59 E-value=1.8e-15 Score=126.59 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=101.4
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDY 254 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (433)
+|+|||+|.+|+|+|..|.+.+.+++++.+.+....| +.. ..+.. .+... .. ....
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~-~~~------------~~l~~-----~~~~~----~~--~~~~ 60 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP-YDR------------PPLSK-----DFMAH----GD--AEKI 60 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC-BCS------------GGGGT-----THHHH----CC--GGGS
T ss_pred CEEEECccHHHHHHHHHHHhcCCceEEEEEecccccc-hhh------------HHHhh-----hhhhh----hh--hhhH
Confidence 5999999999999999999998887777665432211 100 00000 00000 00 0000
Q ss_pred CCCCCCCCCCCCCCccChhhhhcccCCCe--eecCCceeee--CCeEEecCCceeeccEEEEccCCCCCCCCCCccc---
Q psy2398 255 GLKKPDHPLDAAHPIMNSQILYHIGHGDI--LPKDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEK--- 327 (433)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~v~~~~--~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~--- 327 (433)
. ........+ .....++++. ...+.++||+++++|.+|+|||.+|+..+++.+.
T Consensus 61 ~-------------------~~~~~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~ 121 (183)
T d1d7ya1 61 R-------------------LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARA 121 (183)
T ss_dssp B-------------------CCGGGSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHHH
T ss_pred H-------------------HHHhhcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcccccccccccce
Confidence 0 000011123 3355677765 3578899999999999999999999877665432
Q ss_pred --ccccCCccccccccccCCCCcEEEEccccccC----------ChhhHHHHHHHHHHHHHhh
Q psy2398 328 --LEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 328 --~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----------~~~~~a~~qa~~~a~~i~g 378 (433)
+. .++++.++.+ +.++.|+||++|||+..+ ..+..|..||+.+|++|..
T Consensus 122 ~gl~-~~~~I~vd~~-~~ts~~~IyA~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 122 AGLA-CDDGIFVDAY-GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp TTCC-BSSSEECCTT-CBCSSTTEEECGGGEEEECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred eeEe-eCCcEEeccc-eeccccccchhhhhhccceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence 22 2345555554 478899999999997421 2467899999999999864
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.59 E-value=3.2e-15 Score=125.19 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 251 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 251 (433)
++++|+|||+|.+|+|+|..|.+.+.+|+++.+.+....+.... + +. ..+.. ...
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~--~---~~----~~~~~----------------~~~ 56 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLP--P---LS----KAYLA----------------GKA 56 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSG--G---GG----TTTTT----------------TCS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhh--H---HH----HHHHH----------------hhh
Confidence 46899999999999999999999999988887765432221100 0 00 00000 000
Q ss_pred CcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeee--CCeEEecCCceeeccEEEEccCCCCCCCCCC---
Q psy2398 252 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFID--- 324 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~--~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~--- 324 (433)
. ........... ....... ....+..++ ...+.+.++.++++|.+++++|.+|..+.++
T Consensus 57 ~-----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~ 122 (185)
T d1q1ra1 57 T-----------AESLYLRTPDA---YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122 (185)
T ss_dssp C-----------SGGGBSSCHHH---HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHH
T ss_pred h-----------hhhhhhhhhhh---hcccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHH
Confidence 0 00000000000 0011222 222333333 3568888999999999999999988655443
Q ss_pred cccccccCCccccccccccCCCCcEEEEccccccC----------ChhhHHHHHHHHHHHHHhhh
Q psy2398 325 KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----------~~~~~a~~qa~~~a~~i~g~ 379 (433)
...+. ..+.+.++ ..+.++.|+||++|||+..+ ..++.|..||+.+|++|.|+
T Consensus 123 ~~~~~-~~~~i~Vd-~~~~ts~~~vya~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 123 AAGLQ-VDNGIVIN-EHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp HTTCC-BSSSEECC-TTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred hCCcc-ccCccccC-CccccchhhhhcchhhhccccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence 22222 23455555 45678999999999997532 35788999999999999985
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.57 E-value=1.7e-15 Score=133.60 Aligned_cols=138 Identities=15% Similarity=0.258 Sum_probs=89.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC--------cccCCCCCCcccc-ceEeecCCCcc----cCC-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG--------VWNSQASCGRVYP-SLHLISPKFNT----QVP- 71 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg--------~~~~~~~~~~~~~-~~~~~~~~~~~----~~~- 71 (433)
+.+||+|||||++||.||..|+++|++|+||||.+.+|+ .++..+. ...+ ......+..+. .+.
T Consensus 3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~--~~~~~~~~~~~~~~~~~~l~~~~~ 80 (253)
T d2gqfa1 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNL--EVTPAHYLSQNPHFVKSALARYTN 80 (253)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEES--SCCGGGEECSCTTSTHHHHHHSCH
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCc--ccCchhhhccChHHHHHHhhhhcc
Confidence 568999999999999999999999999999999998763 2322110 0000 00000111000 000
Q ss_pred ----------CCCC--CCCCCCCC--CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe----EEEEEccCcEEEe
Q psy2398 72 ----------DYPM--PDNYPVYP--NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI----WEVELSNGKKKKY 133 (433)
Q Consensus 72 ----------~~~~--~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~----~~v~~~~g~~~~~ 133 (433)
.... ......++ ...++.+.+...+++.++ .++++++|+.+...++. +.+. .++.+++|
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV--~i~~~~~V~~i~~~~~~~~v~~~~~-~~~~~~~a 157 (253)
T d2gqfa1 81 WDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQNDEKVRFVLQ-VNSTQWQC 157 (253)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTC--EEECSCCEEEEEECCSCSSCCEEEE-ETTEEEEE
T ss_pred cchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCC--CeecCceEEEEEeecCCceeEEEEe-cCCEEEEe
Confidence 0000 00000111 357788999999999998 69999999999986443 3443 35567999
Q ss_pred CEEEEccCCCCCCCC
Q psy2398 134 DFIAVCNGAQRVARY 148 (433)
Q Consensus 134 d~vIvAtG~~s~p~~ 148 (433)
|+||+|||..|.|+.
T Consensus 158 ~~VIiAtGG~S~p~~ 172 (253)
T d2gqfa1 158 KNLIVATGGLSMPGL 172 (253)
T ss_dssp SEEEECCCCSSCGGG
T ss_pred CEEEEcCCccccccc
Confidence 999999999775543
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.5e-16 Score=137.07 Aligned_cols=179 Identities=18% Similarity=0.178 Sum_probs=102.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc-cC----CCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT-QV----PDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~ 80 (433)
++|||+||||||+|+++|..+++.|.+|+|||+. .+||+|.+.. |.+...+..+.... .+ ..+.+....
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~g----c~p~k~l~~~a~~~~~~~~~~~~~g~~~~~- 74 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVG----CVPKKVMWHAAQIREAIHMYGPDYGFDTTI- 74 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHS----HHHHHHHHHHHHHHHHHHTTGGGGTEEEEE-
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEeccc----ccccccchhhHHHHHHHHhhhhhcCccCCc-
Confidence 3589999999999999999999999999999995 6999987652 23322211111000 00 000000000
Q ss_pred CCCCHHHHHHHHH-----------HHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLR-----------SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 81 ~~~~~~~~~~~l~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
......++.++.. ...++.++ .+........ ... . ...++..+.++.+++|||+ .|.+|
T Consensus 75 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV--~v~~~~~~~~---~~~--~-~~~~~~~~~~~~~iiatG~--~p~ip 144 (217)
T d1gesa1 75 NKFNWETLIASRTAYIDRIHTSYENVLGKNNV--DVIKGFARFV---DAK--T-LEVNGETITADHILIATGG--RPSHP 144 (217)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESCCEEE---ETT--E-EEETTEEEEEEEEEECCCE--EECCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhCCeE--EEEeeecccc---eee--e-ecCCCceeeeeeeeeecCc--cccCC
Confidence 0111223333222 22333344 1222221111 011 1 1234567999999999998 88888
Q ss_pred CCCC-CCC-----CceeccCCCCCCC---CCCCCeEEEEcCCCCHHHHHHHHhccCCcEE
Q psy2398 150 NYSG-YFS-----GEILHSMDYKSPD---QIRNKRVLVVGAGNSGCDIAVDASHHSEKVY 200 (433)
Q Consensus 150 ~i~g-~~~-----g~~~~~~~~~~~~---~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~ 200 (433)
++|+ ... +.......+...+ ....++|.|+|+|.+|+|+|..+.+.|.+|+
T Consensus 145 ~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~ 204 (217)
T d1gesa1 145 REPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS 204 (217)
T ss_dssp EEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred CCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence 8876 211 1111222222211 2335689999999999999999988887764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.52 E-value=3.4e-14 Score=118.59 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccC--CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF 249 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~--~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 249 (433)
.||+|+|||+|.+|+++|..|.+.+ .+|+++.+++.+..+.. .............
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~------~~~~~~~~~~~~~----------------- 57 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYL------SNEVIGGDRKLES----------------- 57 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTT------HHHHHHTSSCGGG-----------------
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccc------cccccchhhhhhh-----------------
Confidence 4899999999999999999999986 47899988774322210 0000000000000
Q ss_pred CCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee-cCCceee--eCCeEEecCCceeeccEEEEccCCCCCCCCCCcc
Q psy2398 250 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNL--NGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE 326 (433)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~v~~~--~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~ 326 (433)
.... ........+.. ...+... ....+.+.+++++++|.+|+|||.+++.++++..
T Consensus 58 ------------------~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~ 116 (186)
T d1fcda1 58 ------------------IKHG---YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQR 116 (186)
T ss_dssp ------------------GEEC---SHHHHTTTEEEECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEE
T ss_pred ------------------hhhh---hhhccccceeEeeeeeEeeeeccceeecccceeeccceEEEEeccccchhhhhhh
Confidence 0000 00001112332 2223332 2356778899999999999999999999888754
Q ss_pred cccc--------cCCcccccc-ccccCCCCcEEEEcccccc---CChhhHHHHHHHHHHHHHhhhh
Q psy2398 327 KLEW--------KLGIPDLFI-HIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 327 ~~~~--------~~~~~~~~~-~~~~~~~p~i~~iG~~~~~---~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
.... +.....+.. ....++.|++|++||+... +.....|..||+.+|++|....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~~p~~~~~A~~q~~~~A~ni~~~~ 182 (186)
T d1fcda1 117 AGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVVLL 182 (186)
T ss_dssp ECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEECTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhheeccCcccccccccceeeeeecccccCceEeccccccCCCCchHhHHHHHHHHHHHHHHHHh
Confidence 3221 223333333 3456789999999998854 3346788999999999987653
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.5e-13 Score=104.93 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=83.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.. .+
T Consensus 19 ~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~------------------------------------~~-- 60 (116)
T d1gesa2 19 ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP------------------------------------SF-- 60 (116)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------TS--
T ss_pred hCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh------------------------------------hc--
Confidence 3457999999999999999999999999999999876510 11
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG 141 (433)
..++.+++.+..++.++ ++++++.|+.+..+ ++.+.+++++|+++.+|.||+|+|
T Consensus 61 d~~~~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 61 DPMISETLVEVMNAEGP--QLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp CHHHHHHHHHHHHHHSC--EEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred chhhHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 25688899999999998 69999999999887 456889999999999999999998
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=3.4e-14 Score=123.36 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=64.7
Q ss_pred EEecCCc--eeeccEEEEccCCCCCCCCC-----------Cccccccc-CCccccccccccCCCCcEEEEccccccCChh
Q psy2398 297 VHFVDDT--HIEVDTIIYATGYNRHFPFI-----------DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLG 362 (433)
Q Consensus 297 v~~~dG~--~~~~D~vi~atG~~~~~~~l-----------~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~ 362 (433)
+...||+ ++++|.||+|||.+|..+.. +...++.+ .+.+.++ ..+.|+.|+|||+|||...+.+.
T Consensus 132 v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd-~~~~T~~~gIyA~GDv~~~~~l~ 210 (233)
T d1xdia1 132 ATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVD-RVSRTLATGIYAAGDCTGLLPLA 210 (233)
T ss_dssp EECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCCC-SSSBCSSTTEEECSGGGTSCSCH
T ss_pred EEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcccCCCcCCcC-CCcccCCCCEEEEEEeCCCchhH
Confidence 3345665 48899999999999865322 11223333 3445655 45689999999999998777788
Q ss_pred hHHHHHHHHHHHHHhhhhcCCC
Q psy2398 363 DGLRLQGQFIRSYIQAFIRKSK 384 (433)
Q Consensus 363 ~~a~~qa~~~a~~i~g~~~lp~ 384 (433)
+.|..|++.+|.++.|+...|-
T Consensus 211 ~~A~~~g~~aa~~~~g~~~~p~ 232 (233)
T d1xdia1 211 SVAAMQGRIAMYHALGEGVSPI 232 (233)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCCCC
Confidence 8999999999999999876664
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.49 E-value=1.6e-13 Score=121.23 Aligned_cols=81 Identities=11% Similarity=0.016 Sum_probs=66.0
Q ss_pred ecCCceeeccEEEEccCCCCCCCCCCccc----------ccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHH
Q psy2398 299 FVDDTHIEVDTIIYATGYNRHFPFIDKEK----------LEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRL 367 (433)
Q Consensus 299 ~~dG~~~~~D~vi~atG~~~~~~~l~~~~----------~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~ 367 (433)
..+|+++++|.||+|||.+|+.+.++.+. ++. +.+.+.+++ .+.|+.|+|||+|||...+.+.+.|..
T Consensus 166 ~~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~-~~~Ts~~~IyA~GDv~~~~~l~~~A~~ 244 (261)
T d1mo9a1 166 EAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNE-YLQTSVPNVYAVGDLIGGPMEMFKARK 244 (261)
T ss_dssp EETTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCT-TSBCSSTTEEECGGGGCSSCSHHHHHH
T ss_pred ccccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCC-CcccCCCCEEEEEEeCCCcccHHHHHH
Confidence 34788899999999999999988776432 333 345566654 558999999999999887888899999
Q ss_pred HHHHHHHHHhhhh
Q psy2398 368 QGQFIRSYIQAFI 380 (433)
Q Consensus 368 qa~~~a~~i~g~~ 380 (433)
|++.+|.+|.|+.
T Consensus 245 ~G~~aa~~i~G~k 257 (261)
T d1mo9a1 245 SGCYAARNVMGEK 257 (261)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
Confidence 9999999999863
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.45 E-value=1.4e-16 Score=141.24 Aligned_cols=41 Identities=32% Similarity=0.483 Sum_probs=38.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
||++||||||+|+.||..+++.|.+|+|+|+. .+||+|.+.
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n~ 42 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNV 42 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHT
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEee
Confidence 89999999999999999999999999999985 589998766
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.45 E-value=9.8e-13 Score=100.67 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=82.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
...+.+++|||||+.|+.+|..|++.|.+|+++++.+++- +.
T Consensus 19 ~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll------------------------------------~~-- 60 (119)
T d3lada2 19 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL------------------------------------PA-- 60 (119)
T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS------------------------------------TT--
T ss_pred ccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC------------------------------------Cc--
Confidence 3456899999999999999999999999999999987651 01
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC---cEEEeCEEEEccC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNG 141 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g---~~~~~d~vIvAtG 141 (433)
-..++.+++++..++.|+ +++++++|++++.++++.++++.++ +++.||.|++|+|
T Consensus 61 ~d~ei~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 61 VDEQVAKEAQKILTKQGL--KILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp SCHHHHHHHHHHHHHTTE--EEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred ccchhHHHHHHHHHhcCc--eeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 136788999999999898 5999999999999888888887654 4689999999998
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.43 E-value=1.4e-13 Score=122.67 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
......+...+.+.+++.|+ .++.+++|+.|+.+++.|.|.+++| ++.||.||+|+|.++
T Consensus 147 ~i~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s 206 (276)
T d1ryia1 147 HVEPYFVCKAYVKAAKMLGA--EIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS 206 (276)
T ss_dssp BCCHHHHHHHHHHHHHHTTC--EEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred eeecccchhHHHHHHHHcCC--EEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH
Confidence 44567788888888999888 5889999999998888899999887 699999999999975
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.42 E-value=1.2e-12 Score=113.25 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=54.0
Q ss_pred eeccEEEEccCC-CCCCC--CCCcccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 305 IEVDTIIYATGY-NRHFP--FIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 305 ~~~D~vi~atG~-~~~~~--~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
..+|-+++++|. .|... .++..++.. +++++.++. .+.|+.|+|||+||+...+.+.+.|..|++.+|.++.|+.
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~-~~~TsvpgVyAaGDv~~~~~l~~~A~~eG~~Aa~~i~G~~ 225 (229)
T d1ojta1 147 VAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDK-QMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK 225 (229)
T ss_dssp EEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCT-TSBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred eecceEEEEecccCCcccccchhhhCccCCCCCCEEcCC-CccCCCCCEEEEEecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 445555555554 45433 334344554 345666664 5689999999999999877788899999999999999875
Q ss_pred c
Q psy2398 381 R 381 (433)
Q Consensus 381 ~ 381 (433)
.
T Consensus 226 ~ 226 (229)
T d1ojta1 226 A 226 (229)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.41 E-value=3.1e-13 Score=120.76 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p 146 (433)
...+...+.+.+++.|+ .++++++|+.++.++++|.|++++| ++.+|.||+|+|.++..
T Consensus 149 p~~~~~~l~~~a~~~Gv--~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~ 207 (281)
T d2gf3a1 149 SENCIRAYRELAEARGA--KVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSK 207 (281)
T ss_dssp HHHHHHHHHHHHHHTTC--EEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHH
T ss_pred ccccccccccccccccc--cccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchh
Confidence 46788888889999888 5899999999999988999999887 59999999999997543
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.8e-14 Score=125.29 Aligned_cols=74 Identities=15% Similarity=-0.017 Sum_probs=56.8
Q ss_pred eccEEEEccCCCCCCCCCCcc--cccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 306 EVDTIIYATGYNRHFPFIDKE--KLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 306 ~~D~vi~atG~~~~~~~l~~~--~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
..+..+.++|++|+.+.|..+ .++. +.+++.++. .+.|+.|+||++||+...+.+.+.|..+++.+|+.|.+..
T Consensus 153 ~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~-~~~T~~~~v~A~GD~~~g~~l~~~a~~~G~~aa~~i~~~~ 229 (233)
T d1v59a1 153 TGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDD-QFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGH 229 (233)
T ss_dssp CCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCT-TSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSC
T ss_pred cccccceecccccCCCCcCchhcCeEEcCCCcEEECC-eEecCCCCEEEEcCCcccHHHHHHHHHHHHHHHHHHccCC
Confidence 455667799999998866543 3444 334555554 5579999999999998877888899999999999997754
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.39 E-value=6.8e-13 Score=114.61 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=58.7
Q ss_pred eeeccEEEEccCCCCCCC---------CCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHH
Q psy2398 304 HIEVDTIIYATGYNRHFP---------FIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR 373 (433)
Q Consensus 304 ~~~~D~vi~atG~~~~~~---------~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a 373 (433)
.+.++.++.|||.+|... ++...++..+ .+++.++ ..+.|+.|+||++||+...+.+.+.|..+++.+|
T Consensus 140 ~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd-~~~~T~vpgiyA~GDv~~g~~l~~~A~~~G~~aa 218 (229)
T d3lada1 140 VLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVD-DYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVA 218 (229)
T ss_dssp EECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCC-TTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHH
T ss_pred eeecccccccCCcccccccccccccccchHhcCeeecCCCcEEec-ccccCCCCCEEEEeCCcchHHHHHHHHHHHHHHH
Confidence 477999999999888643 3333344443 3455555 4558999999999999877778888999999999
Q ss_pred HHHhhhhc
Q psy2398 374 SYIQAFIR 381 (433)
Q Consensus 374 ~~i~g~~~ 381 (433)
+.|.|+..
T Consensus 219 ~~i~g~~~ 226 (229)
T d3lada1 219 ERIAGHKA 226 (229)
T ss_dssp HHHHHCCC
T ss_pred HHHcCCCC
Confidence 99998753
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.6e-13 Score=117.20 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=107.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhccC--CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 251 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~--~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 251 (433)
..++|||+|.+|+++|..|.+.+ .+|+++.+.+.....|. + |+..+.. .............
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~----~-------Ls~~~~~-----~~~~~~~~~~~~~- 67 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP----P-------LSKELWF-----SDDPNVTKTLRFK- 67 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG----G-------GGTGGGC-----C--CTHHHHCEEE-
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCcccc----c-------cceeccc-----ccCchhhhhhhhh-
Confidence 46899999999999999998764 56999988764211111 0 1111100 0000000000000
Q ss_pred CcCCCCCCCCCCCCCC--CccChhhhhcccCCCeee--cCCceeee--CCeEEecCCceeeccEEEEccCCCCCCC-CCC
Q psy2398 252 VDYGLKKPDHPLDAAH--PIMNSQILYHIGHGDILP--KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFP-FID 324 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~--~~~v~~~~--~~~v~~~dG~~~~~D~vi~atG~~~~~~-~l~ 324 (433)
........+.... ..........+.+..|.+ ...|++++ .++|.++||+++++|.+|+|||..|+.. +..
T Consensus 68 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~ 144 (213)
T d1m6ia1 68 ---QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAK 144 (213)
T ss_dssp ---CTTSCEEESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHH
T ss_pred ---hcccchhhhhcCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhh
Confidence 0000000000000 001111222333445554 56788885 4689999999999999999999876544 434
Q ss_pred cccccc--cCCccccccccccCCCCcEEEEccccccC---------ChhhHHHHHHHHHHHHHhhhh
Q psy2398 325 KEKLEW--KLGIPDLFIHIAPRNLDNIFFFGFVNAAA---------GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 325 ~~~~~~--~~~~~~~~~~~~~~~~p~i~~iG~~~~~~---------~~~~~a~~qa~~~a~~i~g~~ 380 (433)
...+.. ..+.+.++.++ .++ |+||++|||+... ..++.|..||+.+|++|.|..
T Consensus 145 ~~gl~~~~~~~~i~vd~~l-~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~ 209 (213)
T d1m6ia1 145 TGGLEIDSDFGGFRVNAEL-QAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 209 (213)
T ss_dssp HHTCCBCTTTCSEECCTTC-EEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred ccchhhhhhhhhhhhhHhc-CcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCC
Confidence 344443 33566666555 455 9999999997421 356789999999999999864
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.38 E-value=3.8e-12 Score=97.23 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=80.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
..+++++|||||+.|+.+|..|.+. |.+|+++|+.+.+. +.
T Consensus 16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il------------------------------------~~ 59 (117)
T d1feca2 16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL------------------------------------RG 59 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS------------------------------------TT
T ss_pred ccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc------------------------------------cc
Confidence 4568999999999999999876654 88999999987541 01
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG 141 (433)
+ .+++.+++.+..++.++ +++++++|++++.+ ++...+++++|.++.||.||+|+|
T Consensus 60 ~--d~~~~~~~~~~l~~~GI--~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 60 F--DSELRKQLTEQLRANGI--NVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp S--CHHHHHHHHHHHHHTTE--EEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred c--cchhhHHHHHHHhhCcE--EEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 1 25688999999999998 69999999999876 556678999999999999999999
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.37 E-value=4.7e-13 Score=113.00 Aligned_cols=163 Identities=13% Similarity=0.174 Sum_probs=97.1
Q ss_pred eEEEEcCCCCHHHHHHHHhcc--CCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV 252 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~--~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (433)
+|+|||+|.+|+|+|..|.+. ..+|+++.|++..-... . .+|..+.. ...
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~----~-------~~~~~l~~-----------------~~~ 53 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS----A-------GMQLYLEG-----------------KVK 53 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCG----G-------GHHHHHTT-----------------SSC
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccc----c-------Ccchhhcc-----------------ccc
Confidence 699999999999999999987 45789998876321000 0 01111111 000
Q ss_pred cCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeee--CCeEEe---cCCc--eeeccEEEEccCCCCCC---
Q psy2398 253 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLN--GNIVHF---VDDT--HIEVDTIIYATGYNRHF--- 320 (433)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~--~~~v~~---~dG~--~~~~D~vi~atG~~~~~--- 320 (433)
.. ..+.....+.+...+++ ....|++++ ++++++ .+|+ ++++|.+|+|||..+..
T Consensus 54 ~~-------------~~~~~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g 120 (198)
T d1nhpa1 54 DV-------------NSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDG 120 (198)
T ss_dssp CG-------------GGSBSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC
T ss_pred ch-------------HHHHHhhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccc
Confidence 00 00000001112222444 455677776 345654 3454 37899999999987642
Q ss_pred -----CCCCcccccc-cCCccccccccccCCCCcEEEEccccccC----------ChhhHHHHHHHHHHHHHhhhh
Q psy2398 321 -----PFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 321 -----~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----------~~~~~a~~qa~~~a~~i~g~~ 380 (433)
.++.. .+.. +.+.+.++ ..+.++.|+||++|||+... ..+..|..||+.+|++|.+..
T Consensus 121 ~~~~~~~~~~-~~~~~~~G~i~vd-~~~~T~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~ 194 (198)
T d1nhpa1 121 VRPNTAWLKG-TLELHPNGLIKTD-EYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV 194 (198)
T ss_dssp EEESCGGGTT-TSCBCTTSCBCCC-TTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred cccccccccc-cceeccCCceecC-CcccccccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence 33332 2222 34455555 45678999999999998431 246678999999999987654
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.37 E-value=1.7e-13 Score=119.51 Aligned_cols=79 Identities=20% Similarity=0.157 Sum_probs=60.9
Q ss_pred eeeccEEEEccCCCCCCCC----------CCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHH
Q psy2398 304 HIEVDTIIYATGYNRHFPF----------IDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 372 (433)
Q Consensus 304 ~~~~D~vi~atG~~~~~~~----------l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~ 372 (433)
.+++|.|+++||.+|...- |+...+... .|.+.++++ +.|+.|+|||+||+...+.+.+.|..|++.+
T Consensus 149 ~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~-~~Ts~~~iyA~GDv~~~~~~~~~A~~eg~~a 227 (240)
T d1feca1 149 TLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAY-SKTNVDNIYAIGDVTDRVMLTPVAINEGAAF 227 (240)
T ss_dssp EEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHH
T ss_pred EEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcc-cCcCCCCEEEEEECCCCccchhhHHHHHHHH
Confidence 4788999999999987432 222334443 356667665 5899999999999988777888999999999
Q ss_pred HHHHhhhhcCC
Q psy2398 373 RSYIQAFIRKS 383 (433)
Q Consensus 373 a~~i~g~~~lp 383 (433)
|+++.+..+.+
T Consensus 228 a~~~~~~~~~~ 238 (240)
T d1feca1 228 VDTVFANKPRA 238 (240)
T ss_dssp HHHHHSSCCCC
T ss_pred HHHHhCCCCCC
Confidence 99999875543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.34 E-value=1.1e-11 Score=94.48 Aligned_cols=96 Identities=24% Similarity=0.305 Sum_probs=79.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
...+.+++|||||+.|+.+|..|.+.|.+|+++|+.+.+.. .+
T Consensus 19 ~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~------------------------------------~~- 61 (117)
T d1ebda2 19 GEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------------------------------------GF- 61 (117)
T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------TS-
T ss_pred hhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecc------------------------------------cc-
Confidence 34568999999999999999999999999999999886511 11
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-C--cEEEeCEEEEc
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-G--KKKKYDFIAVC 139 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g--~~~~~d~vIvA 139 (433)
..++.+++.+..++.|+ +++++++|++++.++++..+++.. | .++.+|.|++.
T Consensus 62 -d~~~~~~l~~~l~~~GI--~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 62 -EKQMAAIIKKRLKKKGV--EVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp -CHHHHHHHHHHHHHTTC--EEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred -cchhHHHHHHHHHhcCC--EEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 25688899999999898 699999999999887788777653 3 45899999984
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.34 E-value=8.5e-13 Score=116.67 Aligned_cols=137 Identities=14% Similarity=0.162 Sum_probs=81.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC---C-------CCccccceEeecCCCcccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA---S-------CGRVYPSLHLISPKFNTQVPDYPM 75 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~ 75 (433)
...+|+||||||+|+++|..|+++|++|+||||++..+..+.... + ...+...... .+.....+.+...
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~ 81 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSIS-VPSSSMEYVDALT 81 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTC-BCCCEEEEEETTT
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhc-cCCCcceeEeccC
Confidence 457999999999999999999999999999999876543322110 0 0000000000 0000000000000
Q ss_pred CC------CCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 76 PD------NYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 76 ~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.. ..........+.. .......+. .++++++++.++.+++.+++++++|.++++|.+|.|+|.++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~~r 155 (265)
T d2voua1 82 GERVGSVPADWRFTSYDSIYG--GLYELFGPE--RYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVR 155 (265)
T ss_dssp CCEEEEEECCCCEEEHHHHHH--HHHHHHCST--TEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHHH
T ss_pred CceecccccccccchhHHHHH--HHHHhcccc--eeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccccccc
Confidence 00 0001111222211 122222233 58999999999998889999999999999999999999876443
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=1.2e-14 Score=126.91 Aligned_cols=147 Identities=19% Similarity=0.151 Sum_probs=89.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-------CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-------INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNY 79 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-------~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (433)
+++|+|||||||||+||..|+++| ++|+|||+.+.+||.|.+..+
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~---------------------------- 53 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVA---------------------------- 53 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSC----------------------------
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccC----------------------------
Confidence 579999999999999999999987 479999999999999987621
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCC-
Q psy2398 80 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG- 157 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g- 157 (433)
+.+.....+.++........++ .++++++|-.. +..++ ....||.|++|||.. +..+.++| ....
T Consensus 54 p~~~~~~~~~~~~~~~~~~~g~--~~~~~~~v~~~--------~~~~~-~~~~~~~v~~atGa~--~~~~~~~g~~~~~~ 120 (239)
T d1lqta2 54 PDHPKIKSISKQFEKTAEDPRF--RFFGNVVVGEH--------VQPGE-LSERYDAVIYAVGAQ--SRGVPTPGLPFDDQ 120 (239)
T ss_dssp TTCTGGGGGHHHHHHHHTSTTE--EEEESCCBTTT--------BCHHH-HHHHSSEEEECCCCC--EECCCCTTSCCBTT
T ss_pred cccccchhhhhhhhhhhccCCc--eEEEEEEeccc--------cchhh-hhccccceeeecCCC--cccccccccccccc
Confidence 0122223344444444555554 46666554110 00000 123699999999984 33333333 1010
Q ss_pred ----ceeccCCCCCC------CCCCCCeEEEEcCCCCHHHHHHHHhc
Q psy2398 158 ----EILHSMDYKSP------DQIRNKRVLVVGAGNSGCDIAVDASH 194 (433)
Q Consensus 158 ----~~~~~~~~~~~------~~~~~~~v~VvG~G~sg~d~a~~l~~ 194 (433)
........... ....+++++|+|+|.+++|++..+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~ 167 (239)
T d1lqta2 121 SGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 167 (239)
T ss_dssp TTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence 11111000001 01236788899999999999887654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.33 E-value=1.4e-11 Score=93.63 Aligned_cols=95 Identities=16% Similarity=0.345 Sum_probs=80.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+.+|+|||||+.|+.+|..|++.|.+|+++|+.+.+. +.+ .
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il------------------------------------~~~--d 62 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL------------------------------------RKF--D 62 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC------------------------------------TTS--C
T ss_pred CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccc------------------------------------ccc--c
Confidence 36799999999999999999999999999999987651 011 3
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEE-EeCEEEEcc
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKK-KYDFIAVCN 140 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~-~~d~vIvAt 140 (433)
+++.+++.+..++.|+ +++++++|++++.. ++.+.+++.+|+.. .||.||+|.
T Consensus 63 ~~~~~~~~~~l~~~gV--~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 63 ESVINVLENDMKKNNI--NIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp HHHHHHHHHHHHHTTC--EEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred HHHHHHHHHHHHhCCC--EEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 6788899988888898 69999999999876 56688999999876 579999983
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.33 E-value=1.9e-12 Score=98.54 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=75.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+.+++|||||+.|+.+|..|++.|.+|+++|+.+.+. +.+
T Consensus 19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il------------------------------------~~~-- 60 (115)
T d1lvla2 19 ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL------------------------------------PTY-- 60 (115)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS------------------------------------TTS--
T ss_pred cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc------------------------------------ccc--
Confidence 446799999999999999999999999999999987651 011
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc--CcEEEeCEEEEccC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN--GKKKKYDFIAVCNG 141 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~--g~~~~~d~vIvAtG 141 (433)
.+++.+++.+..++.++ +++++++|++++ ++...+...+ +.++.||.||+|+|
T Consensus 61 d~~~~~~l~~~l~~~gV--~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 61 DSELTAPVAESLKKLGI--ALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp CHHHHHHHHHHHHHHTC--EEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred cchhHHHHHHHHHhhcc--eEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 25678888888888898 699999999886 3443333333 34699999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.33 E-value=1.4e-11 Score=95.98 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=79.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.. ..-.
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~-------------------------------------~~~~ 76 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-------------------------------------RVTA 76 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------------TTSC
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc-------------------------------------cccc
Confidence 357999999999999999999999999999999875410 0113
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC--Ce-EEEEEccCcEEEeCEEEEccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--DI-WEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~--~~-~~v~~~~g~~~~~d~vIvAtG 141 (433)
+++.+++.+..++.|+ +++++++|+.++... .. -.+.+++|.++.+|.||+|+|
T Consensus 77 ~~~~~~~~~~~~~~GV--~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 77 PPVSAFYEHLHREAGV--DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp HHHHHHHHHHHHHHTC--EEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred hhhhhhhhhccccccc--EEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 5677888888888898 599999999998863 22 346788999999999999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.33 E-value=7.7e-12 Score=96.13 Aligned_cols=98 Identities=26% Similarity=0.291 Sum_probs=81.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
...+.+++|||||+.|+.+|..+++.|.+|+++|+.+.+.. .+
T Consensus 23 ~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~------------------------------------~~- 65 (125)
T d1ojta2 23 KEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ------------------------------------GA- 65 (125)
T ss_dssp CCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------TS-
T ss_pred cccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc------------------------------------cc-
Confidence 34568999999999999999999999999999999876511 11
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC----cEEEeCEEEEccC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG----KKKKYDFIAVCNG 141 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g----~~~~~d~vIvAtG 141 (433)
..++.+++.+..++.++ ++++++++++++.++++..+++.++ +++.+|.|++|+|
T Consensus 66 -d~~~~~~l~~~l~~~gv--~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 66 -DRDLVKVWQKQNEYRFD--NIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp -CHHHHHHHHHHHGGGEE--EEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred -hhhHHHHHHHHHHHcCc--ccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 36788889888888888 5999999999998877777776542 3699999999999
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.32 E-value=1e-12 Score=100.72 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 251 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 251 (433)
++++++|||+|.+|+|+|..|++.+.+||++.+++. ++|+. ++..+.. .+.+ .+.
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~-~l~~~------------~~~~~~~-----~~~~----~l~--- 83 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR-LMSRA------------APATLAD-----FVAR----YHA--- 83 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-TTTTT------------SCHHHHH-----HHHH----HHH---
T ss_pred cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc-ccccc------------CCHHHHH-----HHHH----HHH---
Confidence 478999999999999999999999999999999875 22321 1111111 1111 111
Q ss_pred CcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEEccC
Q psy2398 252 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATG 315 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG 315 (433)
..|+ ++.....++++.+..++++||+++++|.||+|+|
T Consensus 84 -~~GV-------------------------~i~~~~~v~~~~~~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 84 -AQGV-------------------------DLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp -TTTC-------------------------EEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred -HCCc-------------------------EEEeCCEEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence 1122 4455778888988999999999999999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.31 E-value=1e-11 Score=95.04 Aligned_cols=92 Identities=23% Similarity=0.371 Sum_probs=76.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++++|||||+.|+.+|..|++.|.+|+++|+.+.+.. ..-..
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------------~~~~~ 72 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS-------------------------------------RAAPA 72 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------------TTSCH
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccc-------------------------------------ccCCH
Confidence 47899999999999999999999999999999875410 01136
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG 141 (433)
++.+++++..++.|+ +++++++|+++.. + .+++.+|.++.+|.||+|+|
T Consensus 73 ~~~~~~~~~l~~~GV--~i~~~~~v~~~~~--~--~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 73 TLADFVARYHAAQGV--DLRFERSVTGSVD--G--VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHHHHHHHHHTTTC--EEEESCCEEEEET--T--EEEETTSCEEECSEEEECSC
T ss_pred HHHHHHHHHHHHCCc--EEEeCCEEEEEeC--C--EEEECCCCEEECCEEEEeeC
Confidence 778888888898898 5899999987653 3 46788999999999999998
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.7e-11 Score=93.40 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=79.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++++|||||+.|+.+|..|++.|.+|+++++.+.+- +.+
T Consensus 20 ~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l------------------------------------~~~-- 61 (125)
T d3grsa2 20 ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL------------------------------------RSF-- 61 (125)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC------------------------------------TTS--
T ss_pred hcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc------------------------------------cch--
Confidence 446799999999999999999999999999999987541 011
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---C------cEEEeCEEEEccC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---G------KKKKYDFIAVCNG 141 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g------~~~~~d~vIvAtG 141 (433)
..++.+++.+..++.|+ +++++++|++++.+++++.++... | ....+|.|++|+|
T Consensus 62 d~~~~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 62 DSMISTNCTEELENAGV--EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp CHHHHHHHHHHHHHTTC--EEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred hhHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 25688899999999999 699999999999988877766432 2 2367999999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2e-11 Score=95.80 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=81.6
Q ss_pred CCcEEEECCChHHHHHHHHHHh----cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE----GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~----~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
.++++|||||+.|+.+|..|.+ .|.+|+++++.+.+.. ..
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~------------------------------------~~ 80 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG------------------------------------KI 80 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT------------------------------------TT
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc------------------------------------cc
Confidence 4689999999999999998853 5899999999765410 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
-..++.+++.+..++.|+ .+++++.|.+++.+++...+++++|+++.+|.||+|+|.
T Consensus 81 -~~~~~~~~~~~~l~~~GV--~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 81 -LPEYLSNWTMEKVRREGV--KVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp -SCHHHHHHHHHHHHTTTC--EEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred -CCHHHHHHHHHHHHhCCc--EEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence 125678888888999999 699999999999988999999999999999999999993
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=3.5e-11 Score=92.22 Aligned_cols=96 Identities=21% Similarity=0.362 Sum_probs=77.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
...+.+++|||||+.|+.+|..|++.|.+|+++|+.+.+- +.+
T Consensus 20 ~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l------------------------------------~~~- 62 (122)
T d1v59a2 20 KEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG------------------------------------ASM- 62 (122)
T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS------------------------------------SSS-
T ss_pred ccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc------------------------------------hhh-
Confidence 3456899999999999999999999999999999987651 011
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC--eEEEEEccC-----cEEEeCEEEEc
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNG-----KKKKYDFIAVC 139 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~--~~~v~~~~g-----~~~~~d~vIvA 139 (433)
.+++.++++...++.|+ +++++++|++++.+++ ...+++.++ +++.+|.|++|
T Consensus 63 -d~ei~~~l~~~l~~~GV--~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 63 -DGEVAKATQKFLKKQGL--DFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp -CHHHHHHHHHHHHHTTC--EEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred -hhhhHHHHHHHHHhccc--eEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 36788999999999998 6999999999998743 344555442 36899999987
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.28 E-value=2.8e-13 Score=114.17 Aligned_cols=44 Identities=23% Similarity=0.450 Sum_probs=40.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~ 49 (433)
.+++|+||||||+||+||..|+++|+ +|+|||+.+.+||.|...
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~ 47 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE 47 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence 35799999999999999999999999 599999999999988765
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.27 E-value=1.4e-11 Score=105.57 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=61.0
Q ss_pred cCCceeeccEEEEccCCCCCC-CC---CCc-----ccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHH
Q psy2398 300 VDDTHIEVDTIIYATGYNRHF-PF---IDK-----EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ 370 (433)
Q Consensus 300 ~dG~~~~~D~vi~atG~~~~~-~~---l~~-----~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~ 370 (433)
.++..+.+|.+|+|||.+|.. |. ... ..+..+++.+.+++ .+.|+.|+||++||+...+.+.+.|..|++
T Consensus 128 ~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~~~g~i~vd~-~~~T~~~~I~A~GDv~~~~~l~~~a~~~g~ 206 (220)
T d1lvla1 128 VDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDE-RCQTSMHNVWAIGDVAGEPMLAHRAMAQGE 206 (220)
T ss_dssp ETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCEETTEECCCT-TCBCSSTTEEECGGGGCSSCCHHHHHHHHH
T ss_pred ccceeEeeceeeEcCCCCcccccccccccCCcceeeehhhcCCcccccc-hhhcCCCCEEEEEEeCCcccchhhhhhhHH
Confidence 456679999999999998864 21 111 11222455666654 458899999999999987788899999999
Q ss_pred HHHHHHhhhhc
Q psy2398 371 FIRSYIQAFIR 381 (433)
Q Consensus 371 ~~a~~i~g~~~ 381 (433)
.+|++|.|+.+
T Consensus 207 ~~a~~i~G~~~ 217 (220)
T d1lvla1 207 MVAEIIAGKAR 217 (220)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHcCCCC
Confidence 99999998753
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=7.1e-13 Score=101.03 Aligned_cols=91 Identities=22% Similarity=0.206 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV 252 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (433)
.++++|||+|++|+|+|..|.+.|.+||++.|++. ++|... +.+.+ .+.+.+.+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~-~l~~~d-------------~~~~~-----~~~~~l~~------- 74 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA-PLPSFD-------------PMISE-----TLVEVMNA------- 74 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTTSC-------------HHHHH-----HHHHHHHH-------
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecch-hhhhcc-------------hhhHH-----HHHHHHHH-------
Confidence 57999999999999999999999999999999875 334321 11111 22222221
Q ss_pred cCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-----CeEEecCCceeeccEEEEccC
Q psy2398 253 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-----NIVHFVDDTHIEVDTIIYATG 315 (433)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-----~~v~~~dG~~~~~D~vi~atG 315 (433)
.++ ++.....++++.. ..+.++||+++++|.||+|||
T Consensus 75 -~GV-------------------------~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 75 -EGP-------------------------QLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp -HSC-------------------------EEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred -CCC-------------------------EEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 111 3444566666642 147789999999999999998
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.26 E-value=2.9e-12 Score=111.31 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=49.3
Q ss_pred cCCCCCCCCCCc--ccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhhc
Q psy2398 314 TGYNRHFPFIDK--EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR 381 (433)
Q Consensus 314 tG~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~ 381 (433)
+|..|+...|.. ..+..+++++.+++ .++|+.|+|||+|||...+.+.+.|..|++.+|+.|.|..+
T Consensus 167 ~~~~~~~~~l~~~~~gv~~~~G~I~vde-~~~T~~~~iyAvGDv~~~~~l~~~A~~eg~~aa~~i~g~~~ 235 (238)
T d1aoga1 167 NGRSPRTKDLQLQNAGVMIKNGGVQVDE-YSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTTP 235 (238)
T ss_dssp CCEEECCGGGCGGGTTCCEETTEECCCT-TCBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSSSC
T ss_pred cccccceeeecccccEEEEcCCeEEecC-CeeeccCCEEEEEEecCCccchhhHHHHHHHHHHHHcCCCC
Confidence 344444444432 23444566677665 55899999999999998778888999999999999998654
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.26 E-value=8.6e-14 Score=107.31 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCCh
Q psy2398 145 VARYPNYSGYFSGEILHSMDYKSPDQ-----IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPT 219 (433)
Q Consensus 145 ~p~~p~i~g~~~g~~~~~~~~~~~~~-----~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~ 219 (433)
+|+.|++||. ..+++...+.+.+. ..+++++|||||.+|+|+|..|++.|.+||+++|++.. ++
T Consensus 1 R~r~p~ipG~--e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l-~~-------- 69 (122)
T d1xhca2 1 RAREPQIKGK--EYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF-LG-------- 69 (122)
T ss_dssp EECCCCSBTG--GGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC-TT--------
T ss_pred CCCCcCCCCc--cceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc-cC--------
Confidence 3678899982 12333322221111 13579999999999999999999999999999988752 12
Q ss_pred hHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEe
Q psy2398 220 PQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHF 299 (433)
Q Consensus 220 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~ 299 (433)
++..+.. .+.+.+. ..++ ++.....+.+++++++ +
T Consensus 70 ------~d~~~~~-----~~~~~l~--------~~GV-------------------------~~~~~~~v~~~~~~~v-~ 104 (122)
T d1xhca2 70 ------LDEELSN-----MIKDMLE--------ETGV-------------------------KFFLNSELLEANEEGV-L 104 (122)
T ss_dssp ------CCHHHHH-----HHHHHHH--------HTTE-------------------------EEECSCCEEEECSSEE-E
T ss_pred ------CCHHHHH-----HHHHHHH--------HCCc-------------------------EEEeCCEEEEEeCCEE-E
Confidence 1111111 2222111 1111 3334567888887776 5
Q ss_pred cCCceeeccEEEEccCC
Q psy2398 300 VDDTHIEVDTIIYATGY 316 (433)
Q Consensus 300 ~dG~~~~~D~vi~atG~ 316 (433)
.+++.+++|.||+|||.
T Consensus 105 ~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 105 TNSGFIEGKVKICAIGI 121 (122)
T ss_dssp ETTEEEECSCEEEECCE
T ss_pred eCCCEEECCEEEEEEEe
Confidence 67888999999999994
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.24 E-value=9.3e-11 Score=89.19 Aligned_cols=96 Identities=11% Similarity=0.164 Sum_probs=79.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
..+.+++|||||+.|+.+|..|.+. +.+|+++|+.+.+- +.
T Consensus 18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL------------------------------------~~ 61 (117)
T d1aoga2 18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL------------------------------------RG 61 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS------------------------------------TT
T ss_pred hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh------------------------------------cc
Confidence 4457999999999999999877765 45799999977540 01
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEcc
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAt 140 (433)
+ ..++.+++.+..++.|+ ++++++++++++.. ++...+++++|+++.||.||+|.
T Consensus 62 ~--d~~~~~~l~~~l~~~GV--~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 62 F--DHTLREELTKQLTANGI--QILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp S--CHHHHHHHHHHHHHTTC--EEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred c--chHHHHHHHHHHHhcCc--EEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 1 26778899999999999 69999999999876 56788999999999999999983
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.24 E-value=2.1e-12 Score=98.29 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=43.8
Q ss_pred CCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 148 YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 148 ~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|+|||. ...+.+.++..... .++|+|||+|.+|+|+|..|++.|.+||++.|++.
T Consensus 1 ~P~IpG~--e~~~ts~~~~~l~~--p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 1 FPPVKGI--ENTISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CCSCTTG--GGCEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CcccCCH--hHcCchhHHhccCC--CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 5788881 12344444444433 58999999999999999999999999999999875
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.5e-11 Score=101.42 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=81.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+.+||+||||||+||+||..|++.|++|+|||+... ||.+.... .+..+. ..+.....
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~-~g~~~~~~---------------~i~~~~------~~~~~~~~ 61 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK-GGQLTTTT---------------EVENWP------GDPNDLTG 61 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST-TGGGGGCS---------------BCCCST------TCCSSCBH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc-cccccccc---------------hhhhhh------ccccccch
Confidence 457999999999999999999999999999998653 44433320 000010 11223456
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
.++.+.+...+.++++. +. ..+|+.++..++.+.++.... .+.++.+++|+|.
T Consensus 62 ~~~~~~~~~~~~~~~~~--~~-~~~V~~~~~~~~~~~v~~~~~-~~~~~~viva~G~ 114 (190)
T d1trba1 62 PLLMERMHEHATKFETE--II-FDHINKVDLQNRPFRLNGDNG-EYTCDALIIATGA 114 (190)
T ss_dssp HHHHHHHHHHHHHTTCE--EE-CCCEEEEECSSSSEEEEESSC-EEEEEEEEECCCE
T ss_pred HHHHHHHHHHHHhcCcE--Ee-cceeEEEecCCCcEEEEEeee-eEeeeeeeeecce
Confidence 78888888888888863 44 447888887777888887654 6899999999998
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.22 E-value=1.9e-12 Score=117.32 Aligned_cols=39 Identities=26% Similarity=0.530 Sum_probs=36.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
+||+|||||++||+||..|+++|++|+|||+++.+||..
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 39 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV 39 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceE
Confidence 489999999999999999999999999999999999854
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.6e-11 Score=113.49 Aligned_cols=39 Identities=23% Similarity=0.477 Sum_probs=37.0
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~ 39 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY 39 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCC
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceee
Confidence 799999999999999999999999999999999999654
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.5e-11 Score=102.26 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=75.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC--CCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY--PNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 85 (433)
|||+||||||+|++||.++++.|.+|+|||++ .||.+.... . .. .++.+ ...
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~------~---------~~---------~~~~~~~~~~ 55 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTV------D---------IE---------NYISVPKTEG 55 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCC------E---------EC---------CBTTBSSEEH
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccccc------c---------ce---------eccccchhhh
Confidence 79999999999999999999999999999974 677665430 0 00 01111 224
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
..+...++..+++++. .......+..+... ...+.....+..++.++.+++++|..
T Consensus 56 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 114 (184)
T d1fl2a1 56 QKLAGALKVHVDEYDV--DVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK 114 (184)
T ss_dssp HHHHHHHHHHHHTSCE--EEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHhhheec--eeeccceeeeecccccccceeeeeeecceeeeccccccccccc
Confidence 6677777777777764 34445556666543 23445556666789999999999973
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=1.3e-10 Score=98.02 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=71.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-CCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-DLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.|||+||||||+|+.||.++++.|.++.+|+++. .+|....... .....++.... . ....-+.-
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~-~gg~~kg~l~r------e--------id~kG~av 66 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPK-PPFPPGSLLER------A--------YDPKDERV 66 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCC-SCCCTTCHHHH------H--------CCTTCCCH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCc-cccCCCcceee------e--------eeccchhh
Confidence 4899999999999999999999999999999863 3433322210 00001100000 0 00011222
Q ss_pred HHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCEEEEccCCC
Q psy2398 86 SMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 86 ~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
..+..-++...... ++ .+ +..+|+.+..+++. .-|.+.+|..+.++.||+|||.+
T Consensus 67 ~a~raQ~k~~l~~~~nL--~i-~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF 123 (230)
T d2cula1 67 WAFHARAKYLLEGLRPL--HL-FQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 123 (230)
T ss_dssp HHHHHHHHHHHHTCTTE--EE-EECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred hhHHHHHHHHHhhhcCH--HH-HhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence 22222233333332 44 23 35577777776554 45888899889999999999973
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.19 E-value=1.3e-10 Score=89.07 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=75.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||||+.|+..|..|++.|.+|+++++.+.+. +.+ ..
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l------------------------------------~~~--d~ 63 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK------------------------------------LIK--DN 63 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT------------------------------------TCC--SH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh------------------------------------ccc--cc
Confidence 4799999999999999999999999999999987541 011 25
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEE-EE---EccCcEEEeCEEEEccC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWE-VE---LSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~-v~---~~~g~~~~~d~vIvAtG 141 (433)
++.+++.+..++.++ ++++++++++++.+++ .+. +. ..+++++.+|.||+|+|
T Consensus 64 ~~~~~~~~~l~~~gI--~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 64 ETRAYVLDRMKEQGM--EIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp HHHHHHHHHHHHTTC--EEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred chhhhhhhhhhcccc--EEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 678888888898898 5999999999998743 222 21 22345799999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.19 E-value=9.4e-11 Score=89.94 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=75.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||+.|+.+|..|++.|.+|+++|+.+.+-. .. -.
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~------------------------------------~~-~d 71 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG------------------------------------VY-LD 71 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------------TT-CC
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc------------------------------------cc-cc
Confidence 457999999999999999999999999999999865410 11 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEcc
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAt 140 (433)
.++.+++++..+..++ ++++++++++++.++....+ ..++.++.+|.||+|.
T Consensus 72 ~~~~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~~~~v-~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 72 KEFTDVLTEEMEANNI--TIATGETVERYEGDGRVQKV-VTDKNAYDADLVVVAV 123 (123)
T ss_dssp HHHHHHHHHHHHTTTE--EEEESCCEEEEECSSBCCEE-EESSCEEECSEEEECS
T ss_pred hhhHHHHHHHhhcCCe--EEEeCceEEEEEcCCCEEEE-EeCCCEEECCEEEEEC
Confidence 5678888888888888 59999999999875433334 5577789999999983
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.18 E-value=3.3e-11 Score=103.37 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=62.0
Q ss_pred CceeeccEEEEcc--------CCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHH
Q psy2398 302 DTHIEVDTIIYAT--------GYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ 370 (433)
Q Consensus 302 G~~~~~D~vi~at--------G~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~ 370 (433)
+..+.+|.+|+|+ |++|+++.|. ..+++.+ .+++.+++ .+.|+.|+|||+|||...+.+.+.|..|++
T Consensus 129 ~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~-~~~T~~~gvyA~GDv~~~~~~~~~A~~~g~ 207 (223)
T d1ebda1 129 AQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQ-QCRTSVPNIFAIGDIVPGPALAHKASYEGK 207 (223)
T ss_dssp EEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTTCCBCTTSCBCCCT-TCBCSSTTEEECGGGSSSCCCHHHHHHHHH
T ss_pred ceEEecccEEEEcCCCccccccceecCCCCChHhcCceECCCCCEeECC-CCCCCCCCEEEEeccCCCcccHHHHHHHHH
Confidence 3457889899885 8888888764 3345553 45677665 568999999999999987778889999999
Q ss_pred HHHHHHhhhh
Q psy2398 371 FIRSYIQAFI 380 (433)
Q Consensus 371 ~~a~~i~g~~ 380 (433)
.+|++|.|+.
T Consensus 208 ~aa~~i~g~~ 217 (223)
T d1ebda1 208 VAAEAIAGHP 217 (223)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHcCCC
Confidence 9999999874
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.17 E-value=2.6e-11 Score=111.28 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
..+++|+|||||++||+||..|+++|++|+|||+++.+||..
T Consensus 28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 69 (370)
T d2iida1 28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV 69 (370)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCee
Confidence 456799999999999999999999999999999999999854
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.17 E-value=1.3e-10 Score=89.15 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=77.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
...+.+++|||||+.|+.+|..|.+.|.+|+++|+.+.+- +.+
T Consensus 22 ~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l------------------------------------~~~- 64 (123)
T d1dxla2 22 SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV------------------------------------PTM- 64 (123)
T ss_dssp SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS------------------------------------TTS-
T ss_pred cccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC------------------------------------chh-
Confidence 3456799999999999999999999999999999987541 011
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc--c-C--cEEEeCEEEEcc
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--N-G--KKKKYDFIAVCN 140 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~--~-g--~~~~~d~vIvAt 140 (433)
..++.+++.+..++.|+ +++++++|.+++.++++.++++. + + .++.+|.|++|.
T Consensus 65 -d~~~~~~l~~~l~~~GI--~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 65 -DAEIRKQFQRSLEKQGM--KFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp -CHHHHHHHHHHHHHSSC--CEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred -hhcchhhhhhhhhcccc--eEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 26788889899999998 69999999999987666666543 2 2 358999999983
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=4.5e-10 Score=85.82 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=75.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
...+.+++|||||+.|+.+|..|++.|.+|+++++..-+ +.+
T Consensus 17 ~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l-------------------------------------~~~- 58 (122)
T d1h6va2 17 PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL-------------------------------------RGF- 58 (122)
T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS-------------------------------------TTS-
T ss_pred ccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhh-------------------------------------ccC-
Confidence 345679999999999999999999999999999974311 011
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe----CCeEEEEEccC---c--EEEeCEEEEccC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY----EDIWEVELSNG---K--KKKYDFIAVCNG 141 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~----~~~~~v~~~~g---~--~~~~d~vIvAtG 141 (433)
..++.+++.+..++.|+ ++++++.|++++.. .....++...+ + ...+|.|++|+|
T Consensus 59 -D~~~~~~l~~~l~~~Gv--~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 59 -DQDMANKIGEHMEEHGI--KFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp -CHHHHHHHHHHHHHTTE--EEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred -CHHHHHHHHHHHHHCCC--EEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 36688999999999998 59999999999764 34455655432 2 357999999998
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.16 E-value=1.1e-11 Score=111.20 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=79.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC-------CcccCCC--------C------CCccccceEeecCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG-------GVWNSQA--------S------CGRVYPSLHLISPKF 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G-------g~~~~~~--------~------~~~~~~~~~~~~~~~ 66 (433)
++|+||||||+||++|..|+++|++|+|+||.+..+ +.+.... . ....+..........
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~ 82 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence 699999999999999999999999999999986421 1110000 0 000011111111100
Q ss_pred cccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEE-EEEEeCCeEEEEEc-cCc--EEEeCEEEEccC
Q psy2398 67 NTQVPDYP-MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVI-NLEQYEDIWEVELS-NGK--KKKYDFIAVCNG 141 (433)
Q Consensus 67 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~-~v~~~~~~~~v~~~-~g~--~~~~d~vIvAtG 141 (433)
........ ..........+..+.+.+.+.++..+. .+.+...+. .+..+++...|++. +|+ ++.||+||.|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG 160 (292)
T d1k0ia1 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGA--TTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDG 160 (292)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTC--EEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCC
T ss_pred ccccccccccccccceeecHHHHHHHHHHHHHhCCC--cEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCC
Confidence 00000000 001111234577888888888888765 355555544 44444555666654 443 478999999999
Q ss_pred CCCCCC
Q psy2398 142 AQRVAR 147 (433)
Q Consensus 142 ~~s~p~ 147 (433)
.+|..+
T Consensus 161 ~~S~vR 166 (292)
T d1k0ia1 161 FHGISR 166 (292)
T ss_dssp TTCSTG
T ss_pred CCCccc
Confidence 987544
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.16 E-value=6.4e-11 Score=90.83 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=72.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
++++|||||+.|+.+|..|++.|.+|+++|+.+.+. .+ ..+
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------~~--d~~ 73 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-------------------------------------GL--DEE 73 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT-------------------------------------TC--CHH
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc-------------------------------------CC--CHH
Confidence 689999999999999999999999999999986541 01 256
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
+.+++.+..++.|+ ++++++++++++. +. + +.++..+.+|.||+|+|.
T Consensus 74 ~~~~~~~~l~~~GV--~~~~~~~v~~~~~--~~--v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 74 LSNMIKDMLEETGV--KFFLNSELLEANE--EG--V-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHHHHHHTTE--EEECSCCEEEECS--SE--E-EETTEEEECSCEEEECCE
T ss_pred HHHHHHHHHHHCCc--EEEeCCEEEEEeC--CE--E-EeCCCEEECCEEEEEEEe
Confidence 77888888888888 5899999988754 22 2 346678999999999994
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.14 E-value=1.7e-10 Score=103.85 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEEccCcEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
....+...+.+.+++.++ +++.+++|+++..+++++ .|.+++| +++||.||+|+|.++.
T Consensus 146 ~p~~l~~~l~~~a~~~gv--~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~ 205 (305)
T d1pj5a2 146 SAARAVQLLIKRTESAGV--TYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGA 205 (305)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred chhhhhhhHHhhhhcccc--cccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHH
Confidence 456778888888888888 699999999999987764 4777776 6999999999999753
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.14 E-value=8.6e-11 Score=104.51 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=80.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCC--C-----------------CCccccceEeecC--
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQA--S-----------------CGRVYPSLHLISP-- 64 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~--~-----------------~~~~~~~~~~~~~-- 64 (433)
+.||+|||||++||++|..|+++|+ +|+|+|+++.++..+.... + .+...........
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 80 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence 4699999999999999999999997 8999999987654322110 0 0000001111111
Q ss_pred CCcccCCCCCCCC-CCC-CCCCHHHHHHHHHHHH-H-HcCCCcceEeCcEEEEEEEeCCeEEEEEccC----cEEEeCEE
Q psy2398 65 KFNTQVPDYPMPD-NYP-VYPNHSMMLDYLRSYA-K-KFDVYNHSIFNTEVINLEQYEDIWEVELSNG----KKKKYDFI 136 (433)
Q Consensus 65 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~-~-~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g----~~~~~d~v 136 (433)
.....+....... ... ...........+.... + ..+. .+.++++++.+...++.+.+++.++ .++.+|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~v 158 (288)
T d3c96a1 81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ--AVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVL 158 (288)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTT--SEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEE
T ss_pred CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCe--eeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeecee
Confidence 1111111100000 001 1112222233322222 2 2334 5889999999998888888988775 36899999
Q ss_pred EEccCCCCC
Q psy2398 137 AVCNGAQRV 145 (433)
Q Consensus 137 IvAtG~~s~ 145 (433)
|.|.|.+|.
T Consensus 159 i~ADG~~S~ 167 (288)
T d3c96a1 159 VGADGIHSA 167 (288)
T ss_dssp EECCCTTCH
T ss_pred eccCCccce
Confidence 999999774
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=99.13 E-value=1.3e-10 Score=103.23 Aligned_cols=131 Identities=12% Similarity=0.142 Sum_probs=82.0
Q ss_pred CCcEEEECCChHHHHHHHHHHh-cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc--cC-CCCC-CCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT--QV-PDYP-MPDNYPV 81 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-~~~~~~~ 81 (433)
.+||+||||||+||++|..|++ .|++|+|||+++.+||.|.+.. ..++........... .+ -.+. .+.....
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGG---QLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVV 109 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCS---TTCCCEEEETTTHHHHHHHTCCCEECSSEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecC---EEcCHHHHhhhHHHHHHHcCCceecCCcccee
Confidence 4799999999999999999987 5999999999999999887642 234444433322110 00 0011 1111112
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEE--------------ccCcEEEeCEEEEccCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VEL--------------SNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~--------------~~g~~~~~d~vIvAtG~ 142 (433)
......+..++...+...+. .+...+.+..+...++... +.. .++.++.++.+|+|+|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~ 183 (278)
T d1rp0a1 110 KHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGH 183 (278)
T ss_dssp SCHHHHHHHHHHHHHTSTTE--EEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCS
T ss_pred cccHHHHHHHHHHHHHhCCC--EEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCC
Confidence 23345566666666655444 4677888877776644322 111 01346889999999996
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.13 E-value=5.3e-11 Score=99.52 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=80.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC----CCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL----GGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYP 80 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~----Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
...+||+||||||+|++||..|++.|++++++|+.... ++..... .. ...+ ...+
T Consensus 3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~---------~~------~~~~------~~~~ 61 (192)
T d1vdca1 3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTT---------TD------VENF------PGFP 61 (192)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGC---------SE------ECCS------TTCT
T ss_pred cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccc---------hh------hhcc------cccc
Confidence 45689999999999999999999999999999976542 2111111 00 0000 0112
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
......++...++..+.++++ .+.+. +|..++..+..+.+.+.. ....+|.+++|+|.
T Consensus 62 ~~~~~~el~~~~~~q~~~~g~--~i~~~-~V~~~~~~~~~~~v~~~~-~~~~~~~~~~a~g~ 119 (192)
T d1vdca1 62 EGILGVELTDKFRKQSERFGT--TIFTE-TVTKVDFSSKPFKLFTDS-KAILADAVILAIGA 119 (192)
T ss_dssp TCEEHHHHHHHHHHHHHHTTC--EEECC-CCCEEECSSSSEEEECSS-EEEEEEEEEECCCE
T ss_pred ccccchHHHHHHHHHHHhhcc--eeeee-eEEecccccCcEEecccc-eeeeeeeEEEEeee
Confidence 234578888888888999987 35544 688888777777787655 46899999999997
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.13 E-value=7.5e-12 Score=96.22 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 146 ARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 146 p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
|++|.+|. ..+++.+.+..+.... +++++|||+|.+|+|+|..+++.|.+||++.+++.
T Consensus 2 ~~lP~ip~--~~~i~ts~~~l~l~~~-p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 2 TKLPFIPE--DPRIIDSSGALALKEV-PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CCCSSCCC--CTTEECHHHHTTCCCC-CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCCCCCCC--CCcEEcHHHhhCcccc-CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 55666664 3456666666655554 68999999999999999999999999999999874
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.13 E-value=1.1e-11 Score=94.65 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=62.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhcc---CCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF 249 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~---~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 249 (433)
+++++|||+|.+|+|+|..++.. +.+|+++.|.+.. +|.+. +.+.+ .+.+.+.
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i-l~~~d-------------~~~~~-----~~~~~l~----- 73 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI-LRGFD-------------SELRK-----QLTEQLR----- 73 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS-STTSC-------------HHHHH-----HHHHHHH-----
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc-ccccc-------------chhhH-----HHHHHHh-----
Confidence 58999999999999999876654 8899999988753 34221 11111 1221111
Q ss_pred CCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-----CeEEecCCceeeccEEEEccCC
Q psy2398 250 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-----NIVHFVDDTHIEVDTIIYATGY 316 (433)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-----~~v~~~dG~~~~~D~vi~atG~ 316 (433)
..++ ++.....+++++. ..+.++||+++++|.||+|||+
T Consensus 74 ---~~GI-------------------------~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 74 ---ANGI-------------------------NVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp ---HTTE-------------------------EEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred ---hCcE-------------------------EEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence 1111 4445677888752 1478999999999999999995
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.11 E-value=8.6e-10 Score=99.30 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=36.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
+.+||+|||||++|+++|+.|+++|.+|+|+||.+..||.
T Consensus 15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~ 54 (308)
T d1y0pa2 15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54 (308)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 4589999999999999999999999999999999877763
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.9e-10 Score=97.15 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=58.6
Q ss_pred CCceeeccEEEEccCCCCCCC--------C--CCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 301 DDTHIEVDTIIYATGYNRHFP--------F--IDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 301 dG~~~~~D~vi~atG~~~~~~--------~--l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
+...+.+|.++.+||..|..| . |+...+..+ .+++.+++ .++|+.|+|||+||+...+.+.+.|..|+
T Consensus 126 ~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~~~~~G~I~vd~-~~~T~~~gvyA~GDv~~~~~l~~~A~~~G 204 (221)
T d3grsa1 126 SGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDE-FQNTNVKGIYAVGDVCGKALLTPVAIAAG 204 (221)
T ss_dssp TTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCCBCTTSCBCCCT-TCBCSSTTEEECGGGGTSSCCHHHHHHHH
T ss_pred eccccccceeEEecCccccCCCccccCCCCcCchhcCcEECCCccEEeCC-CccccCCcEEEEEEccCCcCcHHHHHHHH
Confidence 335678999999999776544 2 232334443 34455554 56899999999999988667888999999
Q ss_pred HHHHHHHhhhh
Q psy2398 370 QFIRSYIQAFI 380 (433)
Q Consensus 370 ~~~a~~i~g~~ 380 (433)
+.+|+.+.+..
T Consensus 205 ~~aa~~~~~~~ 215 (221)
T d3grsa1 205 RKLAHRLFEYK 215 (221)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHcCCC
Confidence 99999998753
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.10 E-value=1.5e-11 Score=93.42 Aligned_cols=50 Identities=20% Similarity=0.386 Sum_probs=41.3
Q ss_pred CceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 157 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 157 g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
++++.+.+....... +++++|||+|.+|+|+|..|++.|.+||++.+.+.
T Consensus 6 ~~~~~s~~~l~~~~~-p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 6 GPVISSTEALAPKAL-PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp TTEECHHHHTCCSSC-CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CcEECChHHhCcccC-CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 355666555555444 58999999999999999999999999999999875
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.09 E-value=2e-10 Score=104.25 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=82.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCC------------------------------Ccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASC------------------------------GRV 55 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~------------------------------~~~ 55 (433)
+.+||+|||||++||++|..|+++|++|+|+||.+..||.-...... ...
T Consensus 22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~ 101 (322)
T d1d4ca2 22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN 101 (322)
T ss_dssp EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhcccccc
Confidence 34799999999999999999999999999999998877643221100 000
Q ss_pred ccce----EeecC---CCc----ccCCC------CCCCCC---CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEE
Q psy2398 56 YPSL----HLISP---KFN----TQVPD------YPMPDN---YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE 115 (433)
Q Consensus 56 ~~~~----~~~~~---~~~----~~~~~------~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~ 115 (433)
.+.+ ..... .++ ..|.+ ...+.. .........+.+.+...+.+.++ .++++++|+.+.
T Consensus 102 d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv--~i~~~t~v~~li 179 (322)
T d1d4ca2 102 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGT--DIRLNSRVVRIL 179 (322)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTC--EEETTEEEEEEE
T ss_pred CHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCc--eEEEeeeccccc
Confidence 0000 00000 000 00100 000000 00112356778888888888888 599999999987
Q ss_pred Ee-CCe---EEEEEccCc--EEEeCEEEEccCCCC
Q psy2398 116 QY-EDI---WEVELSNGK--KKKYDFIAVCNGAQR 144 (433)
Q Consensus 116 ~~-~~~---~~v~~~~g~--~~~~d~vIvAtG~~s 144 (433)
.+ ++. ..+...++. .+.++.||+|||.++
T Consensus 180 ~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~ 214 (322)
T d1d4ca2 180 EDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA 214 (322)
T ss_dssp CCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred ccccccccceEEEeecccEEEEeCCeEEEcCCCcc
Confidence 75 332 333333332 488999999999864
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.06 E-value=4.1e-11 Score=93.32 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.+++++|||+|.+|+|+|..|.+.+.+||++.+.+.
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 478999999999999999999999999999999875
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=9.3e-11 Score=90.08 Aligned_cols=61 Identities=25% Similarity=0.225 Sum_probs=55.1
Q ss_pred CCCCCC--CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce
Q psy2398 148 YPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 208 (433)
Q Consensus 148 ~p~i~g--~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~ 208 (433)
.+++|| +|.|+-+|.+..++...|+||+|+|||+|.||+|.|..|++.+++||+++|++.+
T Consensus 3 ~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~ 65 (126)
T d1fl2a2 3 NMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM 65 (126)
T ss_dssp CCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred cCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc
Confidence 457788 7888888888888888899999999999999999999999999999999998753
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=5.6e-11 Score=91.43 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=52.9
Q ss_pred CCCC--CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 150 NYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 150 ~i~g--~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
++|| +|.|+.+|.+..++...|++|+|+|||+|+||+|.|..|++.+++||+++|++.
T Consensus 2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~ 61 (126)
T d1trba2 2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 61 (126)
T ss_dssp CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence 4667 788888888888888889999999999999999999999999999999999875
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.04 E-value=4.9e-11 Score=90.98 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=41.6
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.++++.+..+.... +++++|||+|.+|+|+|..+++.|.+|+++.++++
T Consensus 8 ~v~~s~~~l~l~~~-p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 8 VIVDSTGALDFQNV-PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp SEEEHHHHTSCSSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEchhHhhCcccC-CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 46666666655554 58899999999999999999999999999999876
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.03 E-value=5e-10 Score=101.31 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=82.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC------------------------------CCc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS------------------------------CGR 54 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~------------------------------~~~ 54 (433)
++.+||+|||||++||+||+.|++.|.+|+|+||.+..||.-..... ...
T Consensus 17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~ 96 (317)
T d1qo8a2 17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ 96 (317)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccc
Confidence 34589999999999999999999999999999999877653221100 000
Q ss_pred cccceE----eecCC---Cc----ccCCCC------CCCCC---CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEE
Q psy2398 55 VYPSLH----LISPK---FN----TQVPDY------PMPDN---YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINL 114 (433)
Q Consensus 55 ~~~~~~----~~~~~---~~----~~~~~~------~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v 114 (433)
..+.+. -.++. ++ ..|.+. ..+.. .........+.+.+...+++.++ .++++++++.+
T Consensus 97 ~d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~--~i~~~~~v~~l 174 (317)
T d1qo8a2 97 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGI--DTRLNSRVVKL 174 (317)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTC--CEECSEEEEEE
T ss_pred cchhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccc--eeeeccchhhe
Confidence 000000 00000 00 001100 00000 00112245688888888988887 58999999998
Q ss_pred EEe-CCe---EEEEEccCc--EEEeCEEEEccCCCC
Q psy2398 115 EQY-EDI---WEVELSNGK--KKKYDFIAVCNGAQR 144 (433)
Q Consensus 115 ~~~-~~~---~~v~~~~g~--~~~~d~vIvAtG~~s 144 (433)
..+ ++. ..+...++. .+.++.||+|||.++
T Consensus 175 ~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~ 210 (317)
T d1qo8a2 175 VVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG 210 (317)
T ss_dssp EECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred eecccccceeeEeecccceEEEEeccceEEeccccc
Confidence 765 333 233333443 378999999999864
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.03 E-value=1e-10 Score=102.85 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=41.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
++.||++|||||++|+.+|..+++.|.+|+++|+.+.+||+|...
T Consensus 40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~ 84 (261)
T d1mo9a1 40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHN 84 (261)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHH
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccc
Confidence 456899999999999999999999999999999999999988654
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.6e-11 Score=92.41 Aligned_cols=92 Identities=18% Similarity=0.335 Sum_probs=63.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhc----cCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASH----HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAG 248 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~----~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 248 (433)
.++++|||+|.+|+|+|.+|++ .+.+|+++.+++.. +++. +|..+.. .+.+. +.
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~-l~~~------------~~~~~~~-----~~~~~----l~ 94 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MGKI------------LPEYLSN-----WTMEK----VR 94 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TTTT------------SCHHHHH-----HHHHH----HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC-Cccc------------CCHHHHH-----HHHHH----HH
Confidence 6899999999999999999974 48899999987652 2221 1222211 22221 11
Q ss_pred CCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEecCCceeeccEEEEccC
Q psy2398 249 FDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFVDDTHIEVDTIIYATG 315 (433)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~dG~~~~~D~vi~atG 315 (433)
..|+ ++.....|++++.. .++++||+++++|.||+|||
T Consensus 95 ----~~GV-------------------------~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 95 ----REGV-------------------------KVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp ----TTTC-------------------------EEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred ----hCCc-------------------------EEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence 1122 34456677877543 58899999999999999999
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=5.5e-10 Score=96.37 Aligned_cols=197 Identities=13% Similarity=0.062 Sum_probs=104.0
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCC-CChhHH-hHhhchhhcCchHHHHHHHHHHHHhcCCCC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG-KPTPQW-MLQLGNKFSSKEETMAYIKQVFKLAGFDGV 252 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~-~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (433)
.|+|||+|+.|+..|..+++.|.+|.++.+.+.. +..... ....-+ ...+|..+.. ...+... . .....
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~--~~~~~~~~GG~c~~~g~~~~k~l~-----~~~~~~~-~-~~~~~ 75 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT--PLGTNWGLGGTCVNVGCIPKKLMH-----QAALLGQ-A-LKDSR 75 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC--TTCCCCCTTHHHHHHSHHHHHHHH-----HHHHHHH-H-HHHTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC--Ccccccccccccccccccchhhhh-----hhhhhhh-H-hhhhh
Confidence 4899999999999999999999999999876421 000000 000000 0012222111 1111101 1 11112
Q ss_pred cCCCCCCCCCCCC-CC---------CccChhhhhcccCCCeeecCCceee-eCCeE--EecCCc--eeeccEEEEccCCC
Q psy2398 253 DYGLKKPDHPLDA-AH---------PIMNSQILYHIGHGDILPKDDIKNL-NGNIV--HFVDDT--HIEVDTIIYATGYN 317 (433)
Q Consensus 253 ~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~v~~~~~v~~~-~~~~v--~~~dG~--~~~~D~vi~atG~~ 317 (433)
.+++......... .. ..++..+...+...+|++...-..+ ....+ ...++. .+.+|.++++||.+
T Consensus 76 ~~gi~~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~ 155 (235)
T d1h6va1 76 NYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGER 155 (235)
T ss_dssp TTTBCCCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEE
T ss_pred ccccccccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCC
Confidence 2332211110000 00 0011112222233345543322222 22332 233444 37899999999999
Q ss_pred CCCCCC----------Cccccccc--CCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHHhhhhc
Q psy2398 318 RHFPFI----------DKEKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFIR 381 (433)
Q Consensus 318 ~~~~~l----------~~~~~~~~--~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i~g~~~ 381 (433)
|...-+ +...+... .+.+.+++ .++|+.|+|||+|||... ..+.+.|..|++.+|+++.|..+
T Consensus 156 p~~~~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~-~~~TsvpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~g~~~ 231 (235)
T d1h6va1 156 PRYLGIRDSCTRTIGLETVGVKINEKTGKIPVTD-EEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGST 231 (235)
T ss_dssp ECCCSSEEESCTTSCCTTTTCCCCSSSCCBCCCT-TSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCC
T ss_pred ceeEEEeeccceeeccccceeeeccccCccccCC-ccccCCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence 975322 22223332 24455554 468999999999999864 35677899999999999988653
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.01 E-value=6.8e-10 Score=85.00 Aligned_cols=92 Identities=14% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 251 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 251 (433)
.+++++|||+|.+|+|+|..|++.|.+||++.+.+. ++|+. +.. ...+.+.+.+.
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~-~l~~~----------------~d~-----~~~~~~~~~l~--- 83 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR-PLGVY----------------LDK-----EFTDVLTEEME--- 83 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-TTTTT----------------CCH-----HHHHHHHHHHH---
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc-ccccc----------------cch-----hhHHHHHHHhh---
Confidence 478999999999999999999999999999999874 22321 111 11111111111
Q ss_pred CcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC---eEEecCCceeeccEEEEcc
Q psy2398 252 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN---IVHFVDDTHIEVDTIIYAT 314 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~---~v~~~dG~~~~~D~vi~at 314 (433)
..++ ++.....+++++++ ...++||+++++|.||+|.
T Consensus 84 -~~gv-------------------------~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 84 -ANNI-------------------------TIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp -TTTE-------------------------EEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred -cCCe-------------------------EEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 1111 34456778888654 3558899999999999984
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=99.01 E-value=6.8e-10 Score=98.41 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=37.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCccc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWN 47 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~ 47 (433)
+||+|||||++||+||..|+++|+ +|+|||+++.+||.+.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~ 41 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH 41 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEE
Confidence 489999999999999999999997 7999999999999764
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.99 E-value=1.4e-10 Score=99.86 Aligned_cols=106 Identities=21% Similarity=0.294 Sum_probs=67.6
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+||||||+||+||.+|++. |++|+|||+.+.+||.+.+..+ +.+...
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~----------------------------~~~~~~ 53 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA----------------------------PDHPEV 53 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC----------------------------TTCGGG
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhcc----------------------------cccccc
Confidence 5899999999999999999876 6799999999999998876521 012223
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG 153 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g 153 (433)
..+..+........++ .++.++.|.. + ++..+ ..-.||.|++|||+. .+..+.+++
T Consensus 54 ~~~~~~~~~~~~~~~~--~~~~~~~v~~-----~---~~~~~-l~~~~d~v~~a~Ga~-~~~~~~~~~ 109 (230)
T d1cjca2 54 KNVINTFTQTARSDRC--AFYGNVEVGR-----D---VTVQE-LQDAYHAVVLSYGAE-DKSRPIDPS 109 (230)
T ss_dssp GGHHHHHHHHHTSTTE--EEEBSCCBTT-----T---BCHHH-HHHHSSEEEECCCCC-EECCCCCTT
T ss_pred ccchhhhhhhhhcCCe--eEEeeEEeCc-----c---ccHHH-HHhhhceEEEEeecc-ccccccccc
Confidence 3444555555555555 3555554410 0 00000 012589999999984 223344444
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=3.3e-10 Score=96.58 Aligned_cols=84 Identities=17% Similarity=0.062 Sum_probs=60.2
Q ss_pred EecCCceeeccEEEEccCCCCCCCCCCc--------ccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 298 HFVDDTHIEVDTIIYATGYNRHFPFIDK--------EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 298 ~~~dG~~~~~D~vi~atG~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
...++..+.++.+++|||.+|..|-++. ..+..........+..+.++.|+||++||......+.+.+..++
T Consensus 121 ~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G 200 (217)
T d1gesa1 121 LEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAG 200 (217)
T ss_dssp EEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHH
T ss_pred ecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHH
Confidence 3456778999999999998877653321 12222222223334566778899999999988777888899999
Q ss_pred HHHHHHHhhhhc
Q psy2398 370 QFIRSYIQAFIR 381 (433)
Q Consensus 370 ~~~a~~i~g~~~ 381 (433)
+.++..+.+..+
T Consensus 201 ~~v~~~~~~~~p 212 (217)
T d1gesa1 201 RRLSERLFNNKP 212 (217)
T ss_dssp HHHHHHHHTTCT
T ss_pred HHHHHHHhCCCC
Confidence 999998888764
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.95 E-value=4.8e-10 Score=93.51 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=90.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChh--HHh---HhhchhhcCchHHHHHHHHHHHHh
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTP--QWM---LQLGNKFSSKEETMAYIKQVFKLA 247 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~--~~~---~~~p~~~~~~~~~~~~~~~~~~~~ 247 (433)
.++|+|||||++|++.|..+++.+.+|.++.+....... .+.... .+. ...|.....+ .+...+.+..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----el~~~~~~q~ 77 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIA---PGGQLTTTTDVENFPGFPEGILGV----ELTDKFRKQS 77 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBC---TTCGGGGCSEECCSTTCTTCEEHH----HHHHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccc---cccccccchhhhccccccccccch----HHHHHHHHHH
Confidence 468999999999999999999999999999865421100 000000 000 0011111110 1111111110
Q ss_pred cCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee-ecCCceeeeC--C-eEEecCCceeeccEEEEccCC-----CC
Q psy2398 248 GFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL-PKDDIKNLNG--N-IVHFVDDTHIEVDTIIYATGY-----NR 318 (433)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~v~~~~~--~-~v~~~dG~~~~~D~vi~atG~-----~~ 318 (433)
. .+ .+. ....|..++. . .....+.....+|.+++++|. .|
T Consensus 78 ~----~~---------------------------g~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p 126 (192)
T d1vdca1 78 E----RF---------------------------GTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEP 126 (192)
T ss_dssp H----HT---------------------------TCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEE
T ss_pred H----hh---------------------------cceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCc
Confidence 0 01 111 1223444431 2 223345556889999999986 46
Q ss_pred CCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccCC-hhhHHHHHHHHHHHH
Q psy2398 319 HFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSY 375 (433)
Q Consensus 319 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~-~~~~a~~qa~~~a~~ 375 (433)
+..++. ..++. +.+.+...+..+.|+.|+||++||+...+. ....|.-++..+|..
T Consensus 127 ~~~~~~-~~veld~~G~i~~~~~~~~Ts~~GV~a~GDv~~~~~r~~v~A~g~G~~aA~~ 184 (192)
T d1vdca1 127 ATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALD 184 (192)
T ss_dssp SCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHH
T ss_pred hHHHhc-CceeecCCCeEEeCCCceEecCCCEEEeeecCCcccceEEEEEechHHHHHH
Confidence 666665 23444 345666766788999999999999986442 233444455544443
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=3.7e-09 Score=87.85 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++.|+|||||++|++.|..+++.+.+|+++.|..
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 5689999999999999999999999999998754
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.93 E-value=3.6e-10 Score=85.86 Aligned_cols=90 Identities=22% Similarity=0.286 Sum_probs=60.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhcc---CCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF 249 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~---~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 249 (433)
+++++|||+|.+|+|+|..+... +.+||++.|.+. ++|.+. ..+.. .+.+.+.
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~-iL~~~d-------------~~~~~-----~l~~~l~----- 75 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM-ILRGFD-------------HTLRE-----ELTKQLT----- 75 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS-SSTTSC-------------HHHHH-----HHHHHHH-----
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch-hhcccc-------------hHHHH-----HHHHHHH-----
Confidence 68999999999999999877765 457999998875 334321 11111 2222211
Q ss_pred CCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-----CeEEecCCceeeccEEEEcc
Q psy2398 250 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-----NIVHFVDDTHIEVDTIIYAT 314 (433)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-----~~v~~~dG~~~~~D~vi~at 314 (433)
..|+ ++.....+++++. ..+.++||+++++|.||+|.
T Consensus 76 ---~~GV-------------------------~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 76 ---ANGI-------------------------QILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp ---HTTC-------------------------EEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred ---hcCc-------------------------EEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 1122 4445667777741 24789999999999999984
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.92 E-value=1.7e-10 Score=87.78 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=45.1
Q ss_pred CCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
|.+|+ .++++.+.+....... +++++|||+|++|+|+|..+.+.|.+||+++|++.
T Consensus 1 P~~~~--~~~i~~s~~~l~~~~~-p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 1 PNFKF--SNRILDSTGALNLGEV-PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp TTBCC--CSSEECHHHHHTCSSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CcCCC--CCCEEChhHhhChhhc-CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 34444 4466777666666554 58999999999999999999999999999999886
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.92 E-value=7.5e-09 Score=92.10 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=107.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc----eeecccCCCCChh-----------H-HhHh--hchhhcCch
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY----HYYPKFIDGKPTP-----------Q-WMLQ--LGNKFSSKE 234 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~----~~~p~~~~~~~~~-----------~-~~~~--~p~~~~~~~ 234 (433)
.-.|+|||+|.||+-+|..|.+.|.+|+++.+++. |...++. |...+ . .... .+..+-...
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~yp-g~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~ 85 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYP-GARCDIESIEYCYSFSEEVLQEWNWTERYASQP 85 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCT-TCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCC-CceeccccccccccccccccCCCCCccccCccc
Confidence 44799999999999999999999999999998752 3222211 11000 0 0000 111111111
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--C----CeEEecCCceeecc
Q psy2398 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--G----NIVHFVDDTHIEVD 308 (433)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~----~~v~~~dG~~~~~D 308 (433)
+...+.+...+.+ ++ ...|...+.|.++. + -.|.+.++.+..+|
T Consensus 86 e~~~Yl~~~a~~~-------~L-----------------------~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~ 135 (298)
T d1w4xa1 86 EILRYINFVADKF-------DL-----------------------RSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRAR 135 (298)
T ss_dssp HHHHHHHHHHHHT-------TG-----------------------GGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEE
T ss_pred hHHHHHHHHHHHc-------CC-----------------------cccccCCcEEEEEEEecCCCceeeccccccccccc
Confidence 2222222222111 00 11455666676663 2 25778899999999
Q ss_pred EEEEccCCCCC--CCCC---C---cccccc---cCCccccccccccCCCCcEEEEcccccc---CChhhHHHHHHHHHHH
Q psy2398 309 TIIYATGYNRH--FPFI---D---KEKLEW---KLGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRS 374 (433)
Q Consensus 309 ~vi~atG~~~~--~~~l---~---~~~~~~---~~~~~~~~~~~~~~~~p~i~~iG~~~~~---~~~~~~a~~qa~~~a~ 374 (433)
.||.|||+-.. .|.+ + ..+... -...+..|.++..+++||+|+++-..+. ++....+|.|++++++
T Consensus 136 ~~i~atG~ls~~~~p~~~~~~i~g~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~ 215 (298)
T d1w4xa1 136 YLIMASGQLSDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTD 215 (298)
T ss_dssp EEEECCCSCCCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHH
T ss_pred eEEEeecccccccCCcccccccccCCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHH
Confidence 99999997543 2212 1 111111 1246889999999999999998655532 3566789999999999
Q ss_pred HHhhhh
Q psy2398 375 YIQAFI 380 (433)
Q Consensus 375 ~i~g~~ 380 (433)
.|....
T Consensus 216 ~i~~~~ 221 (298)
T d1w4xa1 216 HIAYMF 221 (298)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 986543
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.91 E-value=2.8e-10 Score=97.22 Aligned_cols=44 Identities=32% Similarity=0.333 Sum_probs=39.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
+.++|++||||||+|+.+|..+++.|.+|+|+|+. .+||+|.+.
T Consensus 3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~~ 46 (220)
T d1lvla1 3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNI 46 (220)
T ss_dssp CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHH
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccccc
Confidence 34589999999999999999999999999999986 589988765
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.1e-09 Score=88.63 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEE
Q psy2398 146 ARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST 203 (433)
Q Consensus 146 p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~ 203 (433)
|+.|+|||.....++|+.++.......+|+|+|||+|++|+|+|..+++.|.+++...
T Consensus 2 Pr~p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~ 59 (162)
T d1ps9a2 2 PRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNI 59 (162)
T ss_dssp ECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCH
T ss_pred CCCCCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeH
Confidence 7889999955667888777776666779999999999999999999999987654433
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=7.8e-10 Score=96.79 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=40.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
+..+||+|||||++|++||..|++.|.+|+|+|+++.+||.+.
T Consensus 3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~ 45 (297)
T d2bcgg1 3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA 45 (297)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceE
Confidence 4679999999999999999999999999999999999999764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.86 E-value=4.8e-10 Score=90.07 Aligned_cols=138 Identities=9% Similarity=-0.023 Sum_probs=90.6
Q ss_pred EccCCCCCCCCC-CCCC-CCCC-ceeccCCCCCCCCCCCCeEEEE--cCCCCHHHHHHHHhccCCcEEEEEecCceeecc
Q psy2398 138 VCNGAQRVARYP-NYSG-YFSG-EILHSMDYKSPDQIRNKRVLVV--GAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPK 212 (433)
Q Consensus 138 vAtG~~s~p~~p-~i~g-~~~g-~~~~~~~~~~~~~~~~~~v~Vv--G~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~ 212 (433)
-|||+ .|..| ++|| ...+ .++.+.+........++.++|+ |+|.+|+|+|..|++.|.+||++.+.+. +++.
T Consensus 3 ~atG~--~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~-~~~~ 79 (156)
T d1djqa2 3 NTDGT--NCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL-ANYM 79 (156)
T ss_dssp CSSCC--CTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT-TTHH
T ss_pred cCCCC--CCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc-cccc
Confidence 38998 77776 7898 4433 5666666655555667788877 9999999999999999999999998763 2221
Q ss_pred cCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceee
Q psy2398 213 FIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL 292 (433)
Q Consensus 213 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~ 292 (433)
.. ..... .+.+.+. ..++ ++.....+.++
T Consensus 80 ~~-------------~~~~~-----~~~~~l~--------~~GV-------------------------~i~~~~~v~~i 108 (156)
T d1djqa2 80 HF-------------TLEYP-----NMMRRLH--------ELHV-------------------------EELGDHFCSRI 108 (156)
T ss_dssp HH-------------TTCHH-----HHHHHHH--------HTTC-------------------------EEEETEEEEEE
T ss_pred cc-------------hhHHH-----HHHHHHh--------hccc-------------------------eEEeccEEEEe
Confidence 10 00000 1111111 1111 34456677888
Q ss_pred eCCeEEecCCceeeccEEEEccCCCCCCCCCCccccc
Q psy2398 293 NGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLE 329 (433)
Q Consensus 293 ~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~~ 329 (433)
++..+.+.++...+.+.++.++|..|+....+...++
T Consensus 109 ~~~~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le 145 (156)
T d1djqa2 109 EPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIE 145 (156)
T ss_dssp ETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEE
T ss_pred cCcceEEEeeeccccceeeeeeEEEecccCCccCcEe
Confidence 8888887777767777888888888877766644443
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=3.5e-10 Score=86.96 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=38.3
Q ss_pred eccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 160 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+.+.++...... .|+++|||+|.+|+|+|..++..|.+||++.|++.
T Consensus 10 ~ts~~~~~l~~~-pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 10 ITSDGFFQLEEL-PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp BCHHHHTTCCSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCHHHHhChhhc-CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 344444444443 58999999999999999999999999999999875
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.86 E-value=1.6e-08 Score=91.82 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=35.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
.+.+||+|||||++||+||++|++.|.+|+|+||.+..|
T Consensus 3 ~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~ 41 (336)
T d2bs2a2 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKR 41 (336)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGG
T ss_pred ceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence 355899999999999999999999999999999977543
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=4.2e-10 Score=86.04 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=40.8
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+++++.+..+.... .++++|||+|++|+|+|..|++.|.+||++.+++.
T Consensus 9 ~v~ts~~~~~l~~~-p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 9 KIVSSTGALSLKEI-PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp SEECHHHHTTCSSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred EEEehHHhhCcccC-CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence 45666555555444 58999999999999999999999999999999876
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.8e-10 Score=97.83 Aligned_cols=136 Identities=13% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccceE-eecCCCcc--cCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSLH-LISPKFNT--QVPDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~ 80 (433)
..++++|||||++|+.+|..|++.+. +|+++++.+... +..+ .+...+. ...+.... .+......+...
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~p----y~r~--~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP----YMRP--PLSKELWFSDDPNVTKTLRFKQWNGKERSI 76 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC----BCSG--GGGTGGGCC--CTHHHHCEEECTTSCEEES
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCC----cccc--ccceecccccCchhhhhhhhhhcccchhhh
Confidence 45789999999999999999999876 599998865431 1100 0000000 00000000 000000000000
Q ss_pred CCCCHHH-HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC
Q psy2398 81 VYPNHSM-MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG 153 (433)
Q Consensus 81 ~~~~~~~-~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g 153 (433)
.+.+... .........++.++ .++++++|+.|+.+++ +|++++|+++.||.||+|||. .|..+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~gI--~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~--~~~~~~l~~ 144 (213)
T d1m6ia1 77 YFQPPSFYVSAQDLPHIENGGV--AVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG--TEPNVELAK 144 (213)
T ss_dssp BSSCGGGSBCTTTTTTSTTCEE--EEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE--EEECCTTHH
T ss_pred hcCChhhhhhhhhHHHHHHCCe--EEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee--ecchhhhhh
Confidence 0000000 00000112234455 5888999999977555 678889999999999999998 555555444
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.85 E-value=2e-09 Score=82.33 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=34.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..++++++|||+|++|+|+|..|++.+.+|+++.|++.
T Consensus 19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 19 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 34579999999999999999999999999999999874
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.83 E-value=5.5e-10 Score=85.52 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=41.6
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 208 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~ 208 (433)
.++.+.+....... +++++|||+|.+|+|+|..+.+.|.+||++.|++..
T Consensus 11 ~v~ts~~~l~l~~~-p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 11 KIVSSTGALALSEI-PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp SEECHHHHTTCSSC-CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred eEEeHHHhhCcccc-CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 45566555655554 689999999999999999999999999999998763
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1e-09 Score=98.09 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
|+||+|||||++||++|..|++.|.+|+|+|+++.+||.+..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t 42 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence 579999999999999999999999999999999999998653
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.81 E-value=3.9e-09 Score=97.50 Aligned_cols=135 Identities=17% Similarity=0.239 Sum_probs=80.3
Q ss_pred CCcEEEECCChHHHHHHHHHHh------cCCCeEEEccCCCCCCcccCCC-------------------CCCc-c-ccce
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE------GNINYDLYEMESDLGGVWNSQA-------------------SCGR-V-YPSL 59 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~------~g~~v~v~e~~~~~Gg~~~~~~-------------------~~~~-~-~~~~ 59 (433)
.+||+||||||||++||+.|++ .|++|+||||+..+|....... +... . ....
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~ 111 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 111 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceE
Confidence 4899999999999999999997 7999999999987754322111 0000 0 0011
Q ss_pred EeecCCCcccCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEE--Ecc-------
Q psy2398 60 HLISPKFNTQVPDYP---MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVE--LSN------- 127 (433)
Q Consensus 60 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~--~~~------- 127 (433)
.+........+...+ .............+..++...++..++ .+.....+..+..++..+... +.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~--~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 189 (380)
T d2gmha1 112 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGV--EVYPGYAAAEILFHEDGSVKGIATNDVGIQKDG 189 (380)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEEECTTSSEEEEEECCEEECTTS
T ss_pred EEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccc--eeeeecceeeeeeccCCceeecccccccccccc
Confidence 111111111111111 111112234578889999999998887 467777777777653322111 110
Q ss_pred --------CcEEEeCEEEEccCCC
Q psy2398 128 --------GKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 128 --------g~~~~~d~vIvAtG~~ 143 (433)
+....++..+++.|..
T Consensus 190 ~~~~~~~~~~~~~~~~~v~~~G~~ 213 (380)
T d2gmha1 190 APKTTFERGLELHAKVTIFAEGCH 213 (380)
T ss_dssp CEEEEEECCCEEECSEEEECCCTT
T ss_pred cccccccccccccccEEEEeeeCC
Confidence 1235688999999974
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.81 E-value=3.2e-10 Score=92.35 Aligned_cols=152 Identities=16% Similarity=0.252 Sum_probs=82.5
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHHH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMM 88 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (433)
+|+|||||++|+.+|..|++ +.+|+++++.+... +..+ ..+ .. .........+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~----~~~~---~~~-------~~------------~~~~~~~~~~ 54 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY----YSKP---MLS-------HY------------IAGFIPRNRL 54 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC----CCST---THH-------HH------------HTTSSCGGGG
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc----cccc---chh-------hh------------hhhhhhhhhh
Confidence 79999999999999999976 67999999876431 0000 000 00 0011111112
Q ss_pred HHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC-CCCC-CCCCceeccCCCC
Q psy2398 89 LDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP-NYSG-YFSGEILHSMDYK 166 (433)
Q Consensus 89 ~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p-~i~g-~~~g~~~~~~~~~ 166 (433)
..+...+....++ .+++++.|+.++.... +.+.++.++.||.+|+|+|. .|..+ .-.| .....+.-...++
T Consensus 55 ~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~---~~~~~~~~i~~D~li~a~G~--~~~~~~~~~gl~~~~~i~v~~~~~ 127 (167)
T d1xhca1 55 FPYSLDWYRKRGI--EIRLAEEAKLIDRGRK---VVITEKGEVPYDTLVLATGA--PNVDLARRSGIHTGRGILIDDNFR 127 (167)
T ss_dssp CSSCHHHHHHHTE--EEECSCCEEEEETTTT---EEEESSCEEECSEEEECCCE--ECCHHHHHTTCCBSSSEECCTTSB
T ss_pred hHHHHHHHHhccc--eeeeeccccccccccc---cccccccccccceeEEEEEe--cCCchhhhcCceeCCceeeccccE
Confidence 2222334445555 4788888988864322 33445567999999999997 33311 1112 1111121111111
Q ss_pred CCCC--CC-----CCeEEEEcCCCCHHHHHHHHhc
Q psy2398 167 SPDQ--IR-----NKRVLVVGAGNSGCDIAVDASH 194 (433)
Q Consensus 167 ~~~~--~~-----~~~v~VvG~G~sg~d~a~~l~~ 194 (433)
...+ |. ..+.+++|++..|++.+..+++
T Consensus 128 t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~ 162 (167)
T d1xhca1 128 TSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLAD 162 (167)
T ss_dssp CSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHH
T ss_pred ecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHH
Confidence 1110 11 1123456777888888877765
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=7.8e-09 Score=92.88 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGG 44 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg 44 (433)
...+||+|||+|++||+||.++++. |.+|+|+||....||
T Consensus 3 ~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g 44 (311)
T d1kf6a2 3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS 44 (311)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC
Confidence 3458999999999999999999986 679999999875443
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.78 E-value=4e-09 Score=80.94 Aligned_cols=55 Identities=25% Similarity=0.243 Sum_probs=49.5
Q ss_pred CCCCceeccCCCCCC--CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce
Q psy2398 154 YFSGEILHSMDYKSP--DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 208 (433)
Q Consensus 154 ~~~g~~~~~~~~~~~--~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~ 208 (433)
.|.|+-++.+..++. .-|+||.|+|||+|.||+|.|..|++.+++||+++|++.+
T Consensus 13 ~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ 69 (130)
T d1vdca2 13 GFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF 69 (130)
T ss_dssp CCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred cccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence 478888898888885 3789999999999999999999999999999999999753
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=1.5e-08 Score=91.91 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=39.3
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
|+++.+.+||+|||+|++||+||.+++++|.+|+|+||.+..||
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg 44 (330)
T d1neka2 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS 44 (330)
T ss_dssp CCCCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS
T ss_pred CCCCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 66666779999999999999999999999999999999876554
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.75 E-value=5.5e-09 Score=87.38 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=68.1
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+|||||++|+.+|..|++. +.+|+++|+.+.+. +... .+....... ....
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~--~~~~--------~~~~~l~~~---------------~~~~ 55 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS--FLSA--------GMQLYLEGK---------------VKDV 55 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS--BCGG--------GHHHHHTTS---------------SCCG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc--cccc--------Ccchhhccc---------------ccch
Confidence 3699999999999999999987 45799999876541 0000 000000000 0001
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGA 142 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~-~~g~--~~~~d~vIvAtG~ 142 (433)
..+..+..+..++.++ +++++++|++++.+++..++.. .+|+ .+.+|.+|+|+|.
T Consensus 56 ~~~~~~~~~~l~~~gi--~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~ 113 (198)
T d1nhpa1 56 NSVRYMTGEKMESRGV--NVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA 113 (198)
T ss_dssp GGSBSCCHHHHHHTTC--EEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred HHHHHhhHHHHHHCCc--EEEEeeceeeEeeccccceeeecccccccccccceeeEeecc
Confidence 1111112233455677 5889999999998777666553 3333 4789999999997
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=7e-09 Score=89.21 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=32.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.|||+||||||+|++||.++++.|.+|+|||+.+.
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~ 37 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP 37 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 48999999999999999999999999999998654
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.71 E-value=8.1e-10 Score=91.34 Aligned_cols=108 Identities=14% Similarity=0.206 Sum_probs=65.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
.+|+|||||++|+.+|..|++.|.++++++..+.....+... .+. ..+... ....
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~--------~l~----~~~~~~------------~~~~- 58 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP--------PLS----KDFMAH------------GDAE- 58 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG--------GGG----TTHHHH------------CCGG-
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhH--------HHh----hhhhhh------------hhhh-
Confidence 569999999999999999999998877777655432111110 000 000000 0000
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
..........++ .++++++|+.++.+. ..+++.+|+++.||.||+|+|. .|+.
T Consensus 59 --~~~~~~~~~~~i--~~~~~~~v~~i~~~~--~~~~~~~g~~~~~D~vi~a~G~--~p~~ 111 (183)
T d1d7ya1 59 --KIRLDCKRAPEV--EWLLGVTAQSFDPQA--HTVALSDGRTLPYGTLVLATGA--APRA 111 (183)
T ss_dssp --GSBCCGGGSTTC--EEEETCCEEEEETTT--TEEEETTSCEEECSEEEECCCE--EECC
T ss_pred --hHHHHHhhcCCe--EEEEecccccccccc--ceeEecCCcEeeeeeEEEEEEE--Eccc
Confidence 000000112233 467788888887543 3567888999999999999998 5554
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.70 E-value=2.8e-09 Score=87.83 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDL 42 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~ 42 (433)
++|+|||||++|+.+|..|++++ .+|+++|+.+..
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~ 39 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY 39 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence 68999999999999999999987 489999988753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.70 E-value=5e-09 Score=94.46 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=38.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
++|+|||||++||+||+.|++.|++|+|||+++.+||.+..
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 42 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRS 42 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEE
Confidence 68999999999999999999999999999999999997653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.68 E-value=5.9e-09 Score=93.67 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=38.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
.++|+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~ 42 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSY 42 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGC
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeee
Confidence 47899999999999999999999999999999999999764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=3.9e-09 Score=80.46 Aligned_cols=43 Identities=26% Similarity=0.062 Sum_probs=34.9
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 162 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 162 ~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
|.++...... +++++|||+|++|+|+|..+++.|.+||++.|+
T Consensus 10 sd~~~~l~~~-P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 10 SDDLFSLPYC-PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp HHHHTTCSSC-CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred chHHhCcccC-CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 3333443333 578999999999999999999999999999875
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=8.6e-09 Score=94.62 Aligned_cols=43 Identities=30% Similarity=0.451 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
.+..+|+|||||++||+||..|+++|++|+|+|+++.+||...
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~ 45 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA 45 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEE
Confidence 4567899999999999999999999999999999999999644
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=98.57 E-value=5.1e-08 Score=89.79 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
....+||+|||+|++|+.+|.+|++.|++|+|+|+..
T Consensus 4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 40 (370)
T d3coxa1 4 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR 40 (370)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456899999999999999999999999999999863
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=3.8e-07 Score=74.76 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=41.9
Q ss_pred EEecCCceeeccEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC
Q psy2398 297 VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA 359 (433)
Q Consensus 297 v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~ 359 (433)
....++.++.++.++.++|..++...+....+..........+....++.|+||++|||...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~ 156 (184)
T d1fl2a1 94 IETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVP 156 (184)
T ss_dssp EEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCS
T ss_pred eeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCcc
Confidence 345667788999999999987654444323333322222344455688999999999998643
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.53 E-value=4.7e-08 Score=85.19 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=35.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
+...++|+|||||++||++|+.|+++|.+|+||||....++.
T Consensus 3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~ 44 (268)
T d1c0pa1 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS 44 (268)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence 345579999999999999999999999999999997644443
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.52 E-value=6.7e-08 Score=80.29 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~ 207 (433)
+|+|+|||+|++|++.|..|++.|. +|+++.|++.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 6899999999999999999999986 6999998864
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=1.2e-07 Score=84.62 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
++.+||+|||+|++||+||+.+++.| +|+|+||.+..||.
T Consensus 5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~ 44 (305)
T d1chua2 5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGS 44 (305)
T ss_dssp SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC--
T ss_pred cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCc
Confidence 44589999999999999999999888 99999999876654
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.46 E-value=3e-07 Score=83.91 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHh----cCCCeEEEccCCCCCCc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE----GNINYDLYEMESDLGGV 45 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~----~g~~v~v~e~~~~~Gg~ 45 (433)
.+||+|||||++||+||..|++ .|++|+|+||....||.
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~ 63 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG 63 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence 3799999999999999999975 69999999998766543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.43 E-value=1.1e-07 Score=78.08 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=67.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||++|+.+|..|++.|.++++++..+.....+... + ....+.. ......
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~-------~--------~~~~~~~--------~~~~~~ 59 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLP-------P--------LSKAYLA--------GKATAE 59 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSG-------G--------GGTTTTT--------TCSCSG
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhh-------H--------HHHHHHH--------hhhhhh
Confidence 4689999999999999999999999998888766542221111 0 0000000 000000
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
............... .+..+..+..++. ....+...++.++.+|.+++|+|. .|..|.+
T Consensus 60 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~v~~~~~~~i~~d~~i~~~G~--~~~~~~~ 118 (185)
T d1q1ra1 60 SLYLRTPDAYAAQNI--QLLGGTQVTAINR--DRQQVILSDGRALDYDRLVLATGG--RPLIPNC 118 (185)
T ss_dssp GGBSSCHHHHHHTTE--EEECSCCEEEEET--TTTEEEETTSCEEECSEEEECCCE--EEEEECC
T ss_pred hhhhhhhhhhcccce--eeeccceeeeecc--cccEEEeeceeEEEeeeeeeeeec--ccCCCCc
Confidence 000001111222222 3444555555543 444677778889999999999998 6666554
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=98.37 E-value=1.8e-07 Score=85.84 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.||+|||+|++|+.+|.+|++.|++|+|+|+..
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 489999999999999999999999999999964
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.37 E-value=1e-07 Score=80.91 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
.+||+||||||+|++||..+++.|.+|+|||+. .+||+|...
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~~~~ 44 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNV 44 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcceecc
Confidence 489999999999999999999999999999996 578877654
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.7e-07 Score=79.45 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=37.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
.|||+||||||+|+++|..+++.|.+|+|+|+. .+||.|...
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-~~GG~c~n~ 44 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNV 44 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CCCCccccc
Confidence 489999999999999999999999999999985 578877554
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=3.7e-07 Score=81.64 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~ 49 (433)
.+||+||||||+||+||..|+++ |++|+|||+.+.+||.+...
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG 94 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEec
Confidence 47999999999999999999965 99999999999999977653
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=7e-06 Score=65.39 Aligned_cols=129 Identities=14% Similarity=0.052 Sum_probs=63.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEE-ccCC---CCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLY-EMES---DLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~-e~~~---~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
..++|+|||||..|+-+|..+.+.|.+++.. ++.. .....+...... ..................... ... .
T Consensus 28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--g 103 (162)
T d1ps9a2 28 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGL-SPQGMQIPRSPRQIVMLQRKA-SKP--G 103 (162)
T ss_dssp CCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGB-CTTCCCCCCCSSEEEEECSSC-SCT--T
T ss_pred cCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhccc-ccccceeccccceEEEEEecc-chh--c
Confidence 3479999999999999999999998754332 2100 000000000000 000000000000000000000 000 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGA 142 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~ 142 (433)
...............+..++ .+..+++|..++ +++..+...+. ..+.||.||+|+|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 104 QGLGKTTGWIHRTTLLSRGV--KMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAGQ 161 (162)
T ss_dssp TTSCTTTHHHHHHHHHHTTC--EEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCCE
T ss_pred cccchhhhHHHHHHHhhCCe--EEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCCC
Confidence 00011123445556677777 577788888875 45555554433 24789999999994
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.13 E-value=1.6e-06 Score=68.25 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhcc-CCcEEEEEecCc
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGY 207 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~-~~~V~~~~r~~~ 207 (433)
...+++|+|||||+||+|.|..+.+. +++|++++|++.
T Consensus 42 p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~ 80 (153)
T d1gtea3 42 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF 80 (153)
T ss_dssp CCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred ccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence 34577899999999999999999998 467999999875
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=1.5e-06 Score=70.20 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
...+|+|+|||+|++|++.|..|++.|.+|+++.+.+.
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 44578999999999999999999999999999998763
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.13 E-value=4.6e-06 Score=66.03 Aligned_cols=93 Identities=9% Similarity=0.050 Sum_probs=63.3
Q ss_pred CcEEEE--CCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCII--GGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~II--GaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|| |||+.|+.+|..|+++|.+|+++++.+.++... .
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~--------------------------------------~ 81 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH--------------------------------------F 81 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH--------------------------------------H
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc--------------------------------------c
Confidence 455555 999999999999999999999999977552110 0
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---------------------CcEEEeCEEEEccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---------------------GKKKKYDFIAVCNGA 142 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---------------------g~~~~~d~vIvAtG~ 142 (433)
......+.+...+.++ +++++++|.+++. +...+.... ...+.+|.+|+|||.
T Consensus 82 ~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~--~~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtgR 155 (156)
T d1djqa2 82 TLEYPNMMRRLHELHV--EELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 155 (156)
T ss_dssp TTCHHHHHHHHHHTTC--EEEETEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE
T ss_pred hhHHHHHHHHHhhccc--eEEeccEEEEecC--cceEEEeeeccccceeeeeeEEEecccCCccCcEecceEEEEecC
Confidence 1123445555666788 6999999999875 333333211 123678888888874
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=98.10 E-value=9.2e-07 Score=81.10 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=34.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
..+||||||+|++|+.+|..|++.|++|+|+|++...
T Consensus 3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~ 39 (379)
T d2f5va1 3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 39 (379)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence 6699999999999999999999999999999986544
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.09 E-value=2.1e-06 Score=74.41 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=29.1
Q ss_pred EEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 176 v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++|||+|+.|+..|..+++.|.+|.++.+..
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~~ 34 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAKVALVEKSR 34 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 8999999999999999999999999998753
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=3.4e-05 Score=58.23 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=69.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+.++|+|||+|-+++..|..|.+..-+|+++-|++.+ ...
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~----------------------------------------~~~ 65 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF----------------------------------------RAE 65 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC----------------------------------------CCC
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc----------------------------------------cch
Confidence 3579999999999999999999998899999887643 123
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEEccC------cEEEeCEEEEccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNG------KKKKYDFIAVCNG 141 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g------~~~~~d~vIvAtG 141 (433)
+.+.+.+.+..+.-++ .++.++.+..+..++... .|++.+. +++.+|.|+++.|
T Consensus 66 ~~~~~~~~~~~~~~~i--~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 66 KILIKRLMDKVENGNI--ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp HHHHHHHHHHHHTSSE--EEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred hHHHHHHHHhhcccce--eEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 4455666655555454 477799999998865433 3555441 3588999999987
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=98.05 E-value=1.3e-06 Score=79.31 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHH-----hcCCCeEEEccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELS-----EGNINYDLYEMESDL 42 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~-----~~g~~v~v~e~~~~~ 42 (433)
..|||+||||||+|+++|..|+ +.|++|+||||.+.+
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 3589999999999999999996 469999999998754
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=97.99 E-value=2.2e-06 Score=74.03 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|++|+-.|..+++.|.+|.++.+.+.
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~ 38 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK 38 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 599999999999999999999999999998863
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.95 E-value=8.5e-06 Score=68.19 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=34.4
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHh--------------------cc-CCcEEEEEecCceeec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDAS--------------------HH-SEKVYHSTRRGYHYYP 211 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~--------------------~~-~~~V~~~~r~~~~~~p 211 (433)
.+.+++|+|||+|++|+|+|..++ +. .++|+++.|++....+
T Consensus 36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ 98 (216)
T d1lqta1 36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAA 98 (216)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCC
T ss_pred cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCC
Confidence 456899999999999999999886 23 6789999999854433
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.91 E-value=0.00012 Score=57.09 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~ 40 (433)
..+|+|||||-+|+-+|..+.++|.+ |+++.+++
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 46899999999999999999999875 88888765
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=97.84 E-value=1.8e-05 Score=67.86 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~ 35 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 35 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999875
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.68 E-value=0.00067 Score=56.19 Aligned_cols=31 Identities=35% Similarity=0.417 Sum_probs=28.7
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.|+|||+|.+|++.|...++.+.++-++..+
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~ 34 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS 34 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence 4899999999999999999999999999864
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.63 E-value=1.8e-05 Score=71.79 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.||++|||||++|+.+|.+|++.|.+|+|+|+..
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 4899999999999999999999999999999975
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.51 E-value=7.9e-06 Score=69.70 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=27.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
++|+|||||++||++|++|++.|.+|+++|+.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~ 32 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDV 32 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence 36999999999999999999999887766653
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.00026 Score=53.12 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=63.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||+|-+.+..|..|.+..-+|+++-+++.+ ...+
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~----------------------------------------~~~~ 69 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM----------------------------------------KADQ 69 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC----------------------------------------CSCH
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc----------------------------------------cccc
Confidence 479999999999999999999988899999887643 0111
Q ss_pred HHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCC-eEEEEEcc---C--cEEEeCEEEEccC
Q psy2398 87 MMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED-IWEVELSN---G--KKKKYDFIAVCNG 141 (433)
Q Consensus 87 ~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~-~~~v~~~~---g--~~~~~d~vIvAtG 141 (433)
.+.+.+... ++ .+.++++|..+..+++ .-.+.+.+ + .++.+|.|+++-|
T Consensus 70 ----~~~~~~~~~~~I--~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 70 ----VLQDKLRSLKNV--DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp ----HHHHHHHTCTTE--EEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred ----ccccccccccce--eEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 122223332 24 5788999999987633 33345443 3 3588999999988
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=7.4e-05 Score=52.96 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=32.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+.++|+|||.|-+|+++|..|.+.|.+|+++|.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 346899999999999999999999999999997653
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.38 E-value=8.7e-05 Score=62.69 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..+++|+|||+|++|+..|..|++.|.+|+++.+++.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 3578999999999999999999999999999998763
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.38 E-value=5.5e-05 Score=69.37 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~ 41 (433)
.||++|||||++|+.+|.+|++.+ ++|+|+|++..
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 499999999999999999999987 79999999863
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.36 E-value=0.00023 Score=61.00 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.++|+|||+|.+|+-+|..|++.|.+|+++.|++.
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 56899999999999999999999999999998764
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.35 E-value=5.5e-05 Score=69.22 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~ 41 (433)
.||++|||||++|+.+|.+|++.+ ++|+|+|+++.
T Consensus 17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~ 52 (385)
T d1cf3a1 17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY 52 (385)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 489999999999999999999875 89999999753
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.34 E-value=8.2e-05 Score=66.60 Aligned_cols=142 Identities=11% Similarity=0.040 Sum_probs=91.9
Q ss_pred CeeecCCceeee--CC--eEEecCCc------eeeccEEEEccCCCC--CCCCCCc------ccc--------cccCCcc
Q psy2398 282 DILPKDDIKNLN--GN--IVHFVDDT------HIEVDTIIYATGYNR--HFPFIDK------EKL--------EWKLGIP 335 (433)
Q Consensus 282 ~v~~~~~v~~~~--~~--~v~~~dG~------~~~~D~vi~atG~~~--~~~~l~~------~~~--------~~~~~~~ 335 (433)
.|...+.|++++ +. .|++.++. +..+|.||+|||... ..+.+.. ..+ .......
T Consensus 129 ~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~ 208 (335)
T d2gv8a1 129 FIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVH 208 (335)
T ss_dssp GEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCC
T ss_pred cccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccccceecccccCCCCcchhcccCccceecccccee
Confidence 455556666654 22 35554432 346999999999763 3332210 011 1112345
Q ss_pred ccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhhcCCCcchhHHHHhhcCCCccCCCccccCCCceee-
Q psy2398 336 DLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWE- 414 (433)
Q Consensus 336 ~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~- 414 (433)
.+|.+.+....|+++|+|-.... ..++.++.|+.++++.+.|+.+||+. ++|.+|.+.+....+......|...
T Consensus 209 ~ly~~~~~~~~p~l~f~G~~~~v-~~~~~~e~Qa~~~a~~~~g~~~Lps~----~~m~~~~~~~~~~~~~~~~~~~~~~~ 283 (335)
T d2gv8a1 209 NVYQHIFYIPDPTLAFVGLALHV-VPFPTSQAQAAFLARVWSGRLKLPSK----EEQLKWQDELMFSLSGANNMYHSLDY 283 (335)
T ss_dssp SEETTTEETTCTTEEESSCCBSS-CHHHHHHHHHHHHHHHHTTSSCCCCH----HHHHHHHHHHHHHHTTCGGGTTBCTT
T ss_pred eeecccccCCCCceEEeeeEEEE-ecCCchHHHHHHHHHHHcCCccCCCc----chhhhhhHHHHHhhcccCccceecCC
Confidence 78999999999999999977653 45678999999999999999999998 9999985432111011222334332
Q ss_pred eeHHHHHHHHHHhh
Q psy2398 415 VDFWKFIKCARMYR 428 (433)
Q Consensus 415 ~~~~~y~~~~~~~~ 428 (433)
.....|+++|++.+
T Consensus 284 ~~~~~y~~~L~~~~ 297 (335)
T d2gv8a1 284 PKDATYINKLHDWC 297 (335)
T ss_dssp THHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 23567999998865
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.30 E-value=0.00098 Score=55.69 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHhcc--CCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~--~~~V~~~~r~~~ 207 (433)
+|+|||+|++|+..|..|.+. +.+|+++.+.+.
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 799999999999999999875 668999988763
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.30 E-value=5.2e-05 Score=68.43 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.||++|||||++|+.+|.+|++. .+|+|+|+++
T Consensus 26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred CccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 37999999999999999999986 9999999875
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.22 E-value=0.00022 Score=59.67 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=34.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhc---------------------cCCcEEEEEecCce
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASH---------------------HSEKVYHSTRRGYH 208 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~---------------------~~~~V~~~~r~~~~ 208 (433)
.+.+++|+|||+|++|+|+|..+.+ ..++|+++.|++..
T Consensus 36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~ 95 (225)
T d1cjca1 36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL 95 (225)
T ss_dssp CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence 4569999999999999999999998 35899999999853
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.15 E-value=0.00094 Score=48.37 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=29.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||+|.+|+..|..|++..-+++++-+++
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 4799999999999999999999877777766554
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.01 E-value=0.0015 Score=48.96 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=60.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+.++|+|||+|-+.+..|..|++..-+|+++-|++.+. ..
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r----------------------------------------a~ 72 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR----------------------------------------AS 72 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC----------------------------------------SC
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc----------------------------------------cc
Confidence 45799999999999999999999888999999876541 01
Q ss_pred HHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCC---eEEEEEcc---C--cEEEeCEEEEc
Q psy2398 86 SMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED---IWEVELSN---G--KKKKYDFIAVC 139 (433)
Q Consensus 86 ~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~---~~~v~~~~---g--~~~~~d~vIvA 139 (433)
+ .+.+.+... ++ .+++++++..+.-++. .-.+.+.+ + .++.+|.|+||
T Consensus 73 ~----~~~~~l~~~~nI--~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa 129 (130)
T d1vdca2 73 K----IMQQRALSNPKI--DVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA 129 (130)
T ss_dssp H----HHHHHHHTCTTE--EEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred h----hhhhccccCCce--EEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence 1 122223332 23 5788999999987632 11233322 3 35889999987
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.00 E-value=0.00028 Score=56.88 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||||..|++.|..|+++|++|+++++.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 689999999999999999999999999999864
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.89 E-value=0.00031 Score=56.35 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.|+|||||..|..+|.+|.+.|++|+|+|+..
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 689999999999999999999999999999875
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0008 Score=53.08 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|+|||+|..|...|..|++.|++|+++++.+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 4799999999999999999999999999998753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.62 E-value=0.00074 Score=51.07 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|+|+|+|..|...|..|.+.|++|+++|+.+.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~ 34 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD 34 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence 4799999999999999999999999999998754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.57 E-value=0.0012 Score=51.35 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++.+|+|||+|.+|+.|+..+.+.|.+|+++|.+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 35799999999999999999999999999999864
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.52 E-value=0.0015 Score=51.59 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=32.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+-+|+|||||.+|+.|+..+...|..|+++|.+..
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 46999999999999999999999999999998753
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.0022 Score=49.68 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=34.6
Q ss_pred CCCCCCcEEEEC-CChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 3 YKNKNIKLCIIG-GGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 3 ~~~~~~~v~IIG-aG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++..+++|+||| .|.-|-..|+.|.+.|++|.++|+..
T Consensus 5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 456788999999 69999999999999999999999865
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.00096 Score=46.92 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++++|+|+|+|.|.||.-+|..|.+.|.+|+++..+.
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 5789999999999999999999999999999998764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.39 E-value=0.001 Score=58.49 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+.|+|+|||||.||+-+|..|++.|.+|+++.++++
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 368999999999999999999999999999999874
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.36 E-value=0.0009 Score=58.60 Aligned_cols=34 Identities=38% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+|+|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5899999999999999999999999999999875
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.34 E-value=0.0012 Score=51.07 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.++||+|+|||||..|.+-|..|.+.|.+||++...
T Consensus 10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467999999999999999999999999999999754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.29 E-value=0.002 Score=48.66 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++++|||+|..|..+|..|.+.|++|+++|+.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 479999999999999999999999999999865
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.26 E-value=0.0016 Score=53.27 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||.|..|+.+|..|++.|++|+++|...
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999764
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.25 E-value=0.0027 Score=49.18 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=32.9
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 3 YKNKNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 3 ~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
|+.++++|+|||+|..|.++|..|...++ +++++|...
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence 45677899999999999999999888887 899999765
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0042 Score=48.97 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..++|+|+|+|+|-+|--++..|.+.+.+|+++.|+.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 4568999999999999999999999988899988764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.14 E-value=0.0027 Score=50.97 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.++|+|||||..|...|..++..|++|+++|+.+
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 35789999999999999999999999999999865
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0032 Score=50.76 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||||..|...|..++..|++|+++|+.+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 699999999999999999999999999999875
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.04 E-value=0.0035 Score=48.12 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=33.2
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
|+ ++...+|.|||||..|.++|..|...++ ++.++|..+
T Consensus 1 m~-~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 1 MK-NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp CT-TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CC-CCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 55 4556799999999999999999999887 799999754
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.92 E-value=0.002 Score=51.84 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.|.+|+|||||.-|.+.|..|++.|.+|+++.+++
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 34689999999999999999999999999999765
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.89 E-value=0.0027 Score=46.30 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+.++|+|+|||+|.+|..-|..|.+.|.+|+++....
T Consensus 9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4579999999999999999999999999999987543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.83 E-value=0.0019 Score=57.10 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|+|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 46799999999999999999999999999999865
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.82 E-value=0.0038 Score=47.75 Aligned_cols=35 Identities=14% Similarity=0.432 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
.+++|.|||+|..|.++|..|...|+ +++++|...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 45799999999999999999999885 799999754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.81 E-value=0.0047 Score=44.97 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.++|+|||+|..|..-|..|.+.|.+|++++...
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 45799999999999999999999999999998654
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.81 E-value=0.0025 Score=53.90 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++|+|||+|.+|+-.|..|++.|.+|+++.|+.
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4589999999999999999999999999999864
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.0036 Score=48.24 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
+.++|+|||||..|+.-|..|.+.|.+|+|+.+.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4579999999999999999999999999999653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.62 E-value=0.01 Score=47.17 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|++.|||+|..|.-+|..|++.|.+|+++.|++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3789999999999999999999999999998865
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.01 Score=43.48 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=35.0
Q ss_pred CCCCCCCCcEEEECCCh-----------HHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 1 MKYKNKNIKLCIIGGGP-----------LGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~-----------~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
|...+..++|+|||+|| ++..++++|++.|++++++..++.
T Consensus 1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~ 52 (127)
T d1a9xa3 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA 52 (127)
T ss_dssp CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence 55445678999999995 899999999999999999997764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.55 E-value=0.006 Score=47.76 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.|||+|.-|.+.|+.|++.|++|+++|+..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 369999999999999999999999999999864
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0041 Score=54.10 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||||.||+-+|..|++.|.+|+++.++++
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 589999999999999999999999999999863
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.38 E-value=0.0084 Score=47.40 Aligned_cols=34 Identities=24% Similarity=0.144 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|+|+|+|.+|.-+|..|++.+.+|+++.|+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 6899999999999999999999999999999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.0076 Score=40.08 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+.|.|||+|.-|-..+.+..+.|+++.+++..+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5899999999999999999999999999997654
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.0039 Score=52.36 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 389999999999999999999999999999863
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.29 E-value=0.007 Score=48.15 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
++|+|||||.-|.+.|..|.+.|.+|+++.+.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 47999999999999999999999999999763
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.0049 Score=54.64 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++|+|||+|.+|+-.|..|++.|.+|+++++++
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4579999999999999999999999999998875
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.17 E-value=0.014 Score=46.15 Aligned_cols=36 Identities=17% Similarity=0.454 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..++|+|+|+|+|-+|--++..|.+.+ +|+++.|+.
T Consensus 15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence 367999999999999999998887766 899888764
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.11 E-value=0.0043 Score=52.74 Aligned_cols=32 Identities=34% Similarity=0.387 Sum_probs=29.5
Q ss_pred eEEEEcCCCCHHHHHHHHhccC-CcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~ 206 (433)
+|+|||+|.+|+-.|..|++.| ++|+++.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 5999999999999999999999 5799999875
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.016 Score=41.66 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=32.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..++|.|||||.-|...|..+.+.|+++.++|+.+.
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 457899999999999999999999999999998764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.06 E-value=0.0048 Score=53.41 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 59999999999999999999999999999875
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.025 Score=40.79 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=32.0
Q ss_pred CCCcEEEECCC-----------hHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGG-----------PLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG-----------~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..++|+|||+| +++..|+++|++.|++++++..++.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 45799999999 5899999999999999999997764
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.72 E-value=0.01 Score=47.83 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=28.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||.|..|+.+|..|+ .|++|+.+|...
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP 32 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence 36999999999999998776 599999999765
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=94.69 E-value=0.018 Score=43.58 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
.+|.|||+|..|.++|..|...++ ++.++|...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 589999999999999999999887 799999765
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=94.60 E-value=0.017 Score=43.67 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
.+|.|||+|.-|.++|..|...++ +++++|....
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~ 36 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence 589999999999999999998887 8999997543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=94.59 E-value=0.019 Score=43.45 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
+.+|+|||+|..|.++|..|...++ +++++|...
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~ 36 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 36 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 3589999999999999999999887 799999654
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.56 E-value=0.0087 Score=49.13 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCceeeccEEEEccC-----CCCCCCCCC--cccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHH
Q psy2398 301 DDTHIEVDTIIYATG-----YNRHFPFID--KEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 372 (433)
Q Consensus 301 dG~~~~~D~vi~atG-----~~~~~~~l~--~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~ 372 (433)
+...+.+|.||+||| +.|+.+.|. ..+++. +.+.+.+++ .+.|+.|+||++||+...+.+...|..+++.+
T Consensus 131 ~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~~~G~i~vd~-~~~T~v~gi~A~GDv~~g~~l~~~A~~~g~~a 209 (221)
T d1dxla1 131 ENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNE-RFSTNVSGVYAIGDVIPGPMLAHKAEEDGVAC 209 (221)
T ss_dssp CCEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBCSSSCBCCCT-TCBCSSTTEEECSTTSSSCCCHHHHHHHHHHH
T ss_pred cccccccceEEEeECCCccCccccCCCCChHhcCceEcCCCcEEeCC-CcccCCCCEEEEeccCCCcccHHHHHHHHHHH
Confidence 344688999999999 556776554 334444 344555554 56899999999999998778888999999999
Q ss_pred HHHHhhhh
Q psy2398 373 RSYIQAFI 380 (433)
Q Consensus 373 a~~i~g~~ 380 (433)
|++|.|+.
T Consensus 210 a~~i~g~~ 217 (221)
T d1dxla1 210 VEYLAGKV 217 (221)
T ss_dssp HHHHTTSC
T ss_pred HHHHcCCC
Confidence 99998875
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.49 E-value=0.016 Score=45.05 Aligned_cols=33 Identities=15% Similarity=0.401 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.+||-|.-|...|++|.++|++|.++|+..
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence 579999999999999999999999999999864
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=94.49 E-value=0.021 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~ 41 (433)
++|+|||||..|.++|..|...++ +++++|....
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~ 36 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence 369999999999999999999876 8999997653
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=94.46 E-value=0.017 Score=43.91 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=29.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
++|.|||+|..|.++|..|...|+ +++++|...
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 589999999999999999999886 799999753
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.43 E-value=0.023 Score=52.10 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=41.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
+..+||+|+|-|..=.-+|.+|++.|.+|+-+|+++.-||.|..-
T Consensus 4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl 48 (491)
T d1vg0a1 4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASF 48 (491)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccce
Confidence 356899999999999999999999999999999999999998754
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.38 E-value=0.01 Score=50.51 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+-+|.+|++.|.+|+++.+..
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999864
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.27 E-value=0.0076 Score=50.08 Aligned_cols=35 Identities=17% Similarity=0.017 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccC-------CcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHS-------EKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~-------~~V~~~~r~~~ 207 (433)
..+|+|||+|++|+-.|..|++.| .+|+++.+.+.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 458999999999999999999986 47999998763
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.023 Score=45.95 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++|+|+|| |..|-.++..|.+.|++|+++.|++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 478999996 9999999999999999999998864
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.15 E-value=0.028 Score=43.28 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
..+|.|||+|..|.++|..|...|+ ++.++|...
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4699999999999999999999988 799999764
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.08 E-value=0.021 Score=45.67 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=29.5
Q ss_pred cEEEE-CCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCII-GGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~II-GaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|| |+|.-|.+.|..|++.|++|++..|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68999 679999999999999999999999864
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=94.03 E-value=0.034 Score=43.53 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..++|+|+|+|+|-+|--++..|...+++|+++.|..
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 4578999999999999999999988889999998874
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.021 Score=43.95 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+.||+++|+|-|..|--+|..+...+.+|++....|
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 4679999999999999999999999999999988654
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.87 E-value=0.036 Score=42.63 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
..+|.|||+|..|.++|+.|...++ +++++|...
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 3579999999999999999999987 799999754
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.85 E-value=0.031 Score=43.66 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=28.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
++|+|||.|.-|-+.|+.|.+.|+ +|..+|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 479999999999999999999986 577788764
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.84 E-value=0.038 Score=42.09 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
+.+|.|||+|..|.++|..|...++ ++.++|...
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 4689999999999999998888777 799999754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.031 Score=43.56 Aligned_cols=34 Identities=18% Similarity=0.018 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...|+|+|+|+.|+.++..++..|.+|++++.++
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 4679999999999999998888999999999865
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=93.81 E-value=0.026 Score=43.75 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|.|||.|.-|...|..|.+.|++|.++|+.+
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 59999999999999999999999999999865
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.79 E-value=0.028 Score=42.44 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
++|.|||+|..|.++|..|...++ +++++|...
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence 379999999999999999998876 799999654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.035 Score=43.42 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.++|+|+|||-++-+++..|.+.|.+++|+.|..
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 45799999999999999999999999999999864
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.69 E-value=0.013 Score=50.36 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=31.0
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|+|||+|++|+-+|..|++.|.+|+++.|++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 699999999999999999999999999999863
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=93.69 E-value=0.04 Score=43.29 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+..|.|||-|..|...|+.|.+.|++|.++|+.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 3579999999999999999999999999999875
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.66 E-value=0.019 Score=48.78 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=30.4
Q ss_pred eEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~ 207 (433)
+|+|||+|.+|+-+|..|++.| .+|+++.|++.
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 6999999999999999999999 58999999874
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.016 Score=51.08 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=58.9
Q ss_pred CCCeeecCCceeeeC--C--eEEecCCceeeccEEEEccCCCCCCC-----CCCccc---ccc--cCCccccccccccCC
Q psy2398 280 HGDILPKDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRHFP-----FIDKEK---LEW--KLGIPDLFIHIAPRN 345 (433)
Q Consensus 280 ~~~v~~~~~v~~~~~--~--~v~~~dG~~~~~D~vi~atG~~~~~~-----~l~~~~---~~~--~~~~~~~~~~~~~~~ 345 (433)
.+.+.....|.++.. + .|++.||+++++|.||+|++..--.. -|+... +.. ..+....+.......
T Consensus 221 g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (383)
T d2v5za1 221 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQP 300 (383)
T ss_dssp GGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHGGGTTCC
T ss_pred CCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccchhhhhhcCC
Confidence 345667778888753 2 47788999999999999987432111 111000 000 111222333334445
Q ss_pred CCcEEEEcccccc--CChhhHHHHHHHHHHHHHhhhh
Q psy2398 346 LDNIFFFGFVNAA--AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 346 ~p~i~~iG~~~~~--~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
..+|+++|+.... ++.+..+..+++.+|..+....
T Consensus 301 ~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~~~~ 337 (383)
T d2v5za1 301 VDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAM 337 (383)
T ss_dssp BTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred cCceEeccccccccCCcchHHHHHHHHHHHHHHHHHh
Confidence 5679999975432 3455667778888777765443
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.62 E-value=0.016 Score=49.39 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=29.9
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+-+|.+|++.|.+|+++.++.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 39999999999999999999999999999864
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=93.56 E-value=0.1 Score=39.97 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++.||+++|||.+. .|.-++..|.+.+..|++++...
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t 71 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT 71 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence 56799999999876 79999999999999999887554
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.54 E-value=0.051 Score=41.50 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+-.|+|+|.|..|..++..|.+.|.+++++|..+
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 3579999999999999999999999999999765
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.52 E-value=0.041 Score=42.87 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...|+|+|+|+.|+.++..++..|.+|+++|+.+
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 3579999999999999999999999999999764
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.44 E-value=0.021 Score=47.04 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=29.9
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|+.|+..|..+++.+.+|.++.+.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 49999999999999999999999999998765
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=93.43 E-value=0.045 Score=42.57 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
+.++|+|||+|-++-+++..|.+.|. +++|+.|..
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 45789999999999999999999997 799998864
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.41 E-value=0.018 Score=49.82 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHhccC-CcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~ 206 (433)
+|+|||+|.+|+-+|..|++.| ++|+++.|++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 5999999999999999999998 5799999874
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.34 E-value=0.037 Score=41.63 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=28.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
.+|+|||+|..|.++|..|...++ ++.++|...
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 379999999999999999998876 799999653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.047 Score=42.62 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
...|+|+|+|+.|+.++..+...|. +|+++|+.+
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence 4579999999999999999999998 699999764
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.21 E-value=0.041 Score=41.64 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=28.6
Q ss_pred cEEEECC-ChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 9 KLCIIGG-GPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGa-G~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
+|+|||| |..|.++|..|...++ ++.++|...
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence 6999996 9999999999999986 899999753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.19 E-value=0.05 Score=42.15 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|+|+|+.|+.++..++..|.+|+++++.+
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 4579999999999999999999999999999764
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=93.14 E-value=0.05 Score=42.78 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|-|||.|.-|...|++|.+.|++|.++|+..
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 469999999999999999999999999999854
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.025 Score=46.50 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|++|+..|..+++.|.+|.++.+++
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 58999999999999999999999999999765
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.11 E-value=0.043 Score=41.94 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.|||.|..|...|+.|++.|++++++++.+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~ 33 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR 33 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence 369999999999999999999999999998765
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=92.91 E-value=0.022 Score=48.54 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhc-cCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASH-HSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~-~~~~V~~~~r~~~ 207 (433)
.+..|+|||+|++|+-.|..|++ .|.+|+++.+++.
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 35579999999999999999987 4999999998863
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.85 E-value=0.032 Score=42.66 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
-+.||+++|+|=|..|--+|..+...|.+|++....|
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 3579999999999999999999999999999998776
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.75 E-value=0.044 Score=41.37 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=27.8
Q ss_pred cEEEECC-ChHHHHHHHHHHhcCC--CeEEEccC
Q psy2398 9 KLCIIGG-GPLGIGLGRELSEGNI--NYDLYEME 39 (433)
Q Consensus 9 ~v~IIGa-G~~Gl~~a~~l~~~g~--~v~v~e~~ 39 (433)
+|+|||| |..|.++|..|...++ +++++|..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence 7999996 9999999999999887 69999864
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=92.49 E-value=0.067 Score=45.86 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=31.6
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++.+|+|+|| |..|...+.+|.++|++|+++.|..
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 4578999997 9999999999999999999998864
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.45 E-value=0.032 Score=45.65 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=29.4
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|++|+..|..+++.+.+|.++.+..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 38999999999999999999999999998753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.38 E-value=0.045 Score=43.25 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
...|+|+|||+.|+.++..++..|. +|+++|+++
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCEEEEECCCccchhheeccccccccccccccccc
Confidence 3579999999999999999999998 689999765
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=92.34 E-value=0.032 Score=48.21 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+-.|..+++.|.+|.++.+.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 49999999999999999999999999999875
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.039 Score=42.74 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=31.0
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|+|+|+|..|.-+|..|++.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 699999999999999999999999999999864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.15 E-value=0.072 Score=45.34 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=31.6
Q ss_pred CCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++|+|+|| |..|-.++..|.+.|++|+++.|..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 578999998 9999999999999999999999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.035 Score=44.38 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
|+|.|||+|..|..+|..++..|.+|+++.+++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 689999999999999999999999999998765
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.04 E-value=0.099 Score=40.81 Aligned_cols=34 Identities=12% Similarity=-0.021 Sum_probs=29.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
...|+|+|+|+.|+.++..++..|. +|+++|..+
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence 4589999999999999999999997 689999764
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=91.86 E-value=0.039 Score=49.08 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=30.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 208 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~ 208 (433)
.|+|||+|.+|+-+|..|++.|.+|.++++...|
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~ 42 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW 42 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 5999999999999999999999999999986443
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.087 Score=40.83 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|+|+|+.|+.++..++..|.++++++...
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~ 64 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE 64 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence 4679999999999999999998999999998754
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=91.77 E-value=0.043 Score=47.74 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+-.|..+++.|.+|.++.+.+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999875
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=91.65 E-value=0.11 Score=39.91 Aligned_cols=35 Identities=11% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
...+|+|||+|-.|-.++.+|...|. +++++-|..
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~ 58 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 58 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence 45789999999999999999999998 588888753
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=91.60 E-value=0.048 Score=48.35 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|..|+-+|..|++.|.+|.++++...
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 36 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence 489999999999999999999999999999644
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=91.43 E-value=0.11 Score=40.85 Aligned_cols=36 Identities=14% Similarity=0.378 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
+.++|+|||+|-+|-+++..|.+.|. +++++.|...
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~ 53 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 53 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence 34799999999999999999999988 6889898653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.16 E-value=0.11 Score=40.53 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=29.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~ 40 (433)
...|+|+|+|+.|+.++..++..|.. |++.|..+
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~ 63 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING 63 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence 35799999999999999999999984 66777654
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=91.03 E-value=0.11 Score=38.87 Aligned_cols=30 Identities=20% Similarity=0.523 Sum_probs=27.2
Q ss_pred cEEEEC-CChHHHHHHHHHHhcCC--CeEEEcc
Q psy2398 9 KLCIIG-GGPLGIGLGRELSEGNI--NYDLYEM 38 (433)
Q Consensus 9 ~v~IIG-aG~~Gl~~a~~l~~~g~--~v~v~e~ 38 (433)
+|+||| +|..|.++|..|...++ ++.++|.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di 34 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI 34 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence 799999 69999999999999887 6889885
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.97 E-value=0.092 Score=43.65 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEME 39 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~ 39 (433)
.+|+|||+|-.|..+|..|++.|+ +++++|..
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 689999999999999999999999 79999964
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=90.95 E-value=0.12 Score=35.86 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=32.7
Q ss_pred CCCCCcEEEECCChHHHHH-HHHHHhcCCCeEEEccCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGL-GRELSEGNINYDLYEMES 40 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~-a~~l~~~g~~v~v~e~~~ 40 (433)
+...++|-+||-|=+|+++ |..|.++|++|+-.|...
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 3466899999999999998 899999999999999764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.91 E-value=0.11 Score=39.99 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=30.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+...|+|+|+|+.|+.++..++..|.+|++++.++
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~ 61 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD 61 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence 34589999999999999999999999999998754
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=90.69 E-value=0.04 Score=43.72 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++|.|||+|..|..+|..++..|.+|+++.+++
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999998764
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=90.67 E-value=0.055 Score=46.97 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+-.|..+++.|.+|.++.+.+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999875
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=90.65 E-value=0.063 Score=46.83 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+-.|..+++.|.+|.++.+.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 39999999999999999999999999999865
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=90.41 E-value=0.089 Score=40.39 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~ 206 (433)
.+.+++++|||+|..|..++..|...+. +++++.|..
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~ 58 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 58 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence 4578999999999999999999999875 688877763
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=90.34 E-value=0.13 Score=39.83 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~ 206 (433)
++++|+|+|+|-+|--++..|.+.+ ++|+++.|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 4789999999999999999999987 5899888764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.28 E-value=0.16 Score=40.36 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=29.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
...+|+|+|+|+.|+.++..++..|. +|+++|..+
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~ 60 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP 60 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence 34589999999999999999888887 688888654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.21 E-value=0.06 Score=39.96 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
|+++|+|.|..|..+|..|.+.|.+|+++..++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 579999999999999999999999999998764
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.15 E-value=0.15 Score=39.80 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
...|+|+|+|+.|+.++..++..|. +|+++|..+
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence 3469999999999999999999996 799999765
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=90.00 E-value=0.072 Score=47.09 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|..|+-+|..|++.|.+|.++++.+
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~ 37 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE 37 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence 59999999999999999999999999999865
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.93 E-value=0.12 Score=40.97 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEc-CCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 169 DQIRNKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 169 ~~~~~~~v~VvG-~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++++|+++|.| +|-.|..+|..|++.|.+|+++.|+.
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 367899999999 58899999999999999999998875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=89.90 E-value=0.12 Score=40.22 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.++|+|+|+|-++-+++..|.+.+.+++|+.|..
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 45789999999999999999998888999999864
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=89.62 E-value=0.14 Score=41.80 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.++|+|||+|.+|+-+|..|.+.+.+++++=+..
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 35799999999999999999999998888887765
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=89.61 E-value=0.063 Score=42.66 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++|+|+|+|.-|.-+|..|++.+.+|+++.|++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 479999999999999999999999999998764
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.50 E-value=0.058 Score=39.68 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=27.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHh-cCCCeE-EEccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSE-GNINYD-LYEMESDL 42 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~-v~e~~~~~ 42 (433)
++.+|+|+|||-+|.+.+.++.. .+++++ .||..+..
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK 40 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence 45799999999999998887754 366654 45655544
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.42 E-value=0.16 Score=38.55 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|.|||+|--|-+.+..|.+.+.+++++++..
T Consensus 2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence 69999999999999999999999999998754
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=89.30 E-value=0.095 Score=45.86 Aligned_cols=33 Identities=36% Similarity=0.336 Sum_probs=29.5
Q ss_pred eEEEEcCCCCHHHHHHHHh-----ccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDAS-----HHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~-----~~~~~V~~~~r~~~ 207 (433)
.|+|||||++|+-+|..|+ +.|-+|+++.|++.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 5999999999999999996 46889999999864
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.24 E-value=0.17 Score=38.59 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
-+.|+|||-|..|-.+|..|+..|.+|+++|..+
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 4789999999999999999999999999999864
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=89.22 E-value=0.18 Score=38.25 Aligned_cols=33 Identities=12% Similarity=0.311 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcC-CCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN-INYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~ 40 (433)
++|.+||+|--|-+.+..|.+.| .++.+++++.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 36999999999999999998887 7999999864
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.18 E-value=0.069 Score=46.17 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhcc--CCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~--~~~V~~~~r~~~ 207 (433)
.++.|+|||+|++|+..|..|++. +.+|+++.+++.
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 86 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 86 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 356799999999999999999964 889999998763
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.07 E-value=0.18 Score=39.21 Aligned_cols=33 Identities=9% Similarity=-0.018 Sum_probs=28.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
..|+|+|+|+.|+.++..++..|. +|+++|..+
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~ 62 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK 62 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence 479999999999999999999997 688888754
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.02 E-value=0.17 Score=39.56 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=29.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.++|+|||+|-++-+++..|.+.| ++.|+.|..
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence 4578999999999999999998776 899998864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.02 E-value=0.11 Score=38.31 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+|+|+|+|..|..+|..|.+.+.+|+++.+++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 69999999999999999999999999998765
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.93 E-value=0.22 Score=43.74 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.1
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.++|+|.|| |+.|-.++..|.+.|++|+++++..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 4578999995 9999999999999999999998754
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.66 E-value=0.025 Score=46.88 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=22.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEE
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVY 200 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~ 200 (433)
+|+|||+|.+|+-.|..|++.|.+|+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred EEEEECchHHHHHHHHHHHHCCCCce
Confidence 69999999999999999999875433
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.63 E-value=0.24 Score=38.42 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=27.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeE-EEccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYD-LYEME 39 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~-v~e~~ 39 (433)
..+|+|+|+|+.|+.++..++..|.+++ +.|.+
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~ 62 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV 62 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred CCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence 4579999999999999999999898655 44543
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=88.54 E-value=0.28 Score=42.78 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=31.8
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+++.|+|+|| |..|-.++..|.+.|++|+++-|+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence 5689999997 9999999999999999999998753
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.49 E-value=0.23 Score=37.24 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=25.6
Q ss_pred CcEEEEC-CChHHHHHHHHHHh-cC--CCeEEEccC
Q psy2398 8 IKLCIIG-GGPLGIGLGRELSE-GN--INYDLYEME 39 (433)
Q Consensus 8 ~~v~IIG-aG~~Gl~~a~~l~~-~g--~~v~v~e~~ 39 (433)
++|+||| +|..|.++|..|.. .+ -++.++|..
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~ 36 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 3799999 59999999988764 34 489999964
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.49 E-value=0.11 Score=46.23 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=29.9
Q ss_pred eEEEEcCCCCHHHHHHHHhc------cCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASH------HSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~------~~~~V~~~~r~~~ 207 (433)
.|+|||||++|.-.|..|++ .|-+|.++.|...
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 59999999999999999987 6899999999864
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=88.20 E-value=0.081 Score=46.15 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.4
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-.|.++++.|.+|.++.+.+.
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~ 41 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFP 41 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 499999999999999999999999999998753
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=88.08 E-value=0.15 Score=42.77 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=30.2
Q ss_pred CcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|.|| |..|-..+.+|.++|++|+.+++..
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 56999998 9999999999999999999998754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.99 E-value=0.13 Score=40.29 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=29.0
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
+|.|+|+|..|.-+|..|++.+.+|+++.|.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 5899999999999999999999999999875
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.24 Score=38.82 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~ 206 (433)
+.++|+|+|+|+|-+|--++..|.+.+ ++++++.|++
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 52 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence 467899999999999999999999875 5788888875
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.19 E-value=0.34 Score=37.45 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=28.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
..|+|+|+|+.|+.++..++..+. +|++++..+
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~ 63 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP 63 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence 469999999999999999999877 577888754
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=86.97 E-value=0.34 Score=38.18 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=31.1
Q ss_pred CCCcEEEEC-CChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIG-GGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIG-aG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.+.|+|.| +|-.|..+|+.|++.|.+|+++++..
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 457899999 48899999999999999999999874
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=86.97 E-value=0.26 Score=37.43 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
-+.++|+|=|..|-.+|..|+..|.+|+|.|..+
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 4799999999999999999999999999999865
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.92 E-value=0.3 Score=39.70 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHh--------------------cCC-CeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE--------------------GNI-NYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~--------------------~g~-~v~v~e~~~~ 41 (433)
..+|+|||+|-.++-+|+.|.+ .|. +|+++.|+..
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~ 94 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence 4789999999999999999987 365 7999998763
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.85 E-value=0.18 Score=39.80 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=29.3
Q ss_pred eEEEE-cCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVV-GAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~Vv-G~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+|.|+ |+|..|.-+|..|++.|.+|+++.|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58899 679999999999999999999999875
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=86.79 E-value=0.19 Score=38.27 Aligned_cols=26 Identities=19% Similarity=0.547 Sum_probs=22.7
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHhcCC
Q psy2398 6 KNIKLCIIGG-GPLGIGLGRELSEGNI 31 (433)
Q Consensus 6 ~~~~v~IIGa-G~~Gl~~a~~l~~~g~ 31 (433)
++.+|+|||| |..|.++|..|...++
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l 29 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEM 29 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccc
Confidence 5679999997 9999999999998643
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.65 E-value=0.33 Score=39.11 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=28.8
Q ss_pred CCcEEEECCChHHHHHHHHHH--------------------hcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELS--------------------EGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~--------------------~~g~-~v~v~e~~~ 40 (433)
..+|+|||+|-.++-+|+.|+ +.|. +|+++-|+.
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg 93 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 93 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence 478999999999999999887 4566 699998875
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=86.56 E-value=0.17 Score=44.64 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++|||+|.+|+=+|..|++.+.+|.++++.+
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 48999999999999999999999999999874
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=86.37 E-value=0.28 Score=43.68 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=34.3
Q ss_pred CCCCCCCCCC--eEEEEcCCCCHHHHHHHHhccC-CcEEEEEecC
Q psy2398 165 YKSPDQIRNK--RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 206 (433)
Q Consensus 165 ~~~~~~~~~~--~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~ 206 (433)
..++++..++ .++|||+|.+|+=+|..|++.+ .+|.++++.+
T Consensus 14 ~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 14 LSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp BCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred cCCcccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 3344555555 5999999999999999999987 5899999885
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=86.15 E-value=0.36 Score=38.82 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
...+|++.|||.+|+..|..|.+.+. ++.++|+..
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G 60 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG 60 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence 34689999999999999999999887 688888764
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.03 E-value=0.18 Score=41.31 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhcc---CCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~---~~~V~~~~r~~ 206 (433)
.+|+|||+|+.|+..|..+++. +.+|.++.+..
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~ 37 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG 37 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence 3799999999999998877765 45788888653
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.99 E-value=0.39 Score=41.68 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=30.1
Q ss_pred CcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|.|| |+.|-..+..|.+.|.+|+++|+..
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~ 36 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH 36 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 68999997 9999999999999999999999743
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.84 E-value=0.31 Score=43.84 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
.+|+|||+|-.|..+|+.|...|+ +++++|...
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999999 899999753
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.76 E-value=0.49 Score=36.88 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+.|.|||.|..|-..|..|...|.+|..+++..
T Consensus 42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CceEEEeccccccccceeeeeccccccccccccc
Confidence 4689999999999999999999999999999764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=85.64 E-value=0.33 Score=42.07 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=28.6
Q ss_pred cEEEECC-ChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 9 KLCIIGG-GPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 9 ~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
+|+|+|| |+.|-..+..|.+.|.+|+++|+-
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~ 33 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL 33 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 5999998 899999999999999999999864
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.29 E-value=0.18 Score=38.27 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=26.3
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHhcCC-------CeEEEccC
Q psy2398 6 KNIKLCIIGG-GPLGIGLGRELSEGNI-------NYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGa-G~~Gl~~a~~l~~~g~-------~v~v~e~~ 39 (433)
++.+|+|||| |..|.++|..|...++ ++.++|..
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~ 43 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT 43 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence 5679999996 9999999999986532 45666653
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.26 E-value=0.38 Score=41.17 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=29.4
Q ss_pred CCcEEEECC-ChHHHHHHHHHHhcCCCeEEEcc
Q psy2398 7 NIKLCIIGG-GPLGIGLGRELSEGNINYDLYEM 38 (433)
Q Consensus 7 ~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~ 38 (433)
+++|+|.|| |+.|-..+..|.+.|.+|+.+++
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 368999998 89999999999999999999986
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=85.23 E-value=0.47 Score=39.31 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+++||.++|.|++. .|.++|..|++.|.+|.++.|+.
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~ 39 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV 39 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 46799999998864 79999999999999999998875
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.22 E-value=0.43 Score=40.40 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=32.4
Q ss_pred CCCCCCCCcEEEECCC---hHHHHHHHHHHhcCCCeEEEccC
Q psy2398 1 MKYKNKNIKLCIIGGG---PLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG---~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
|+|+-+.+.++|-||+ =.|.++|+.|+++|.+|++.++.
T Consensus 2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV 43 (297)
T ss_dssp CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 5655566889999986 48999999999999999998753
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=85.03 E-value=0.37 Score=36.81 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+..+|+|+|+|..|...+..+.+.|.+|+++..+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 46689999999999999999999999999998764
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=84.79 E-value=0.26 Score=42.94 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=32.7
Q ss_pred CCCCeEEEEcC-CCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~-G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+++|+|+|.|+ |..|..++..|.+.|.+|+.+.|..
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 57899999994 8999999999999999999998864
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.73 E-value=0.99 Score=34.56 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=34.3
Q ss_pred CCCCCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecCc
Q psy2398 167 SPDQIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 167 ~~~~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
...+.+||+++|||.+. .|.=+|..|++.+..|++++....
T Consensus 23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~ 64 (171)
T d1edza1 23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNI 64 (171)
T ss_dssp TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEE
T ss_pred ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccc
Confidence 33478899999999665 599999999999999998886654
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.36 E-value=0.37 Score=38.34 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=31.7
Q ss_pred CCeEEEEcC-CCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~-G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|+|+|+ |..|..++..|.+.|.+|+++.|++.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~ 38 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS 38 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence 578999995 99999999999999999999999763
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=84.36 E-value=0.58 Score=37.07 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.|.|||.|-.|-.+|..|...|.+|..+|+..
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 78 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP 78 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred eeeeeeecccccccccccccccceeeeccCCcc
Confidence 689999999999999999999999999999754
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.35 E-value=0.47 Score=36.95 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
...|++|.|||.|.+|..+|..+...|.+|+.+.|.+
T Consensus 39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccCceEEEeccccccccceeeeeccccccccccccc
Confidence 3679999999999999999999999999999887654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.63 E-value=0.7 Score=37.90 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=32.4
Q ss_pred CCCCCCCCcEEEECCCh-HHHHHHHHHHhcCCCeEEEccCC
Q psy2398 1 MKYKNKNIKLCIIGGGP-LGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~-~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|.+.=+.+.++|.||+- .|.++|+.|++.|.+|++.+++.
T Consensus 1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~ 41 (244)
T d1pr9a_ 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 66544557888888864 68899999999999999999864
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=83.35 E-value=0.32 Score=40.48 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCCcEEEECCCh-HHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGP-LGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~-~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+.+.++|.||+- .|.++|+.|++.|.+|++.+++..
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~ 44 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA 44 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 456778888865 789999999999999999998653
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.32 E-value=0.56 Score=35.87 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
.+.|+|||=|.-|.+=|..|++.|++|+|==|.
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~ 48 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS 48 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence 478999999999999999999999999986554
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.29 E-value=1.1 Score=33.33 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=29.1
Q ss_pred CCcEEEECC-ChHHHHHHHHHHhcC---CCeEEEccCCCCCC
Q psy2398 7 NIKLCIIGG-GPLGIGLGRELSEGN---INYDLYEMESDLGG 44 (433)
Q Consensus 7 ~~~v~IIGa-G~~Gl~~a~~l~~~g---~~v~v~e~~~~~Gg 44 (433)
+.+|+|||| |..|....+-|.+++ .++..+-.+...|-
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk 43 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ 43 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc
Confidence 478999999 999999999998654 37777765555543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=83.17 E-value=0.7 Score=36.47 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+.|.|||.|..|-..|..|...|.+|..+++..
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~ 76 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR 76 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence 3689999999999999999999999999999753
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.99 E-value=0.5 Score=38.15 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=27.9
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHhcCCCeEEEc
Q psy2398 6 KNIKLCIIGG-GPLGIGLGRELSEGNINYDLYE 37 (433)
Q Consensus 6 ~~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e 37 (433)
.+++|+|.|| |..|..++..|.+.|.++.+++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~ 34 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG 34 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence 4679999995 9999999999999998877665
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=82.95 E-value=0.33 Score=43.06 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=32.9
Q ss_pred CCCCCCCC--eEEEEcCCCCHHHHHHHHhccC-CcEEEEEecC
Q psy2398 167 SPDQIRNK--RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 206 (433)
Q Consensus 167 ~~~~~~~~--~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~ 206 (433)
++++..++ .++|||+|.+|+=+|..|++.+ .+|-++++.+
T Consensus 9 ~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~ 51 (385)
T d1cf3a1 9 DPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 51 (385)
T ss_dssp CGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred CcccccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 44455555 6899999999999999999876 6899999875
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.92 E-value=0.46 Score=36.80 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+.-+|+|+|+|..|...+......|.+|+++..+.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 35689999999999999999999999999998765
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=82.87 E-value=0.62 Score=40.37 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|.|| |+.|..++..|.+.|++|..+++..
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 479999995 8999999999999999999999864
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=82.85 E-value=0.72 Score=35.53 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
..|+|+|+|..|+.++..++..|. +|++++.++
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~ 63 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK 63 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence 469999999999999999999986 788888654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.78 E-value=0.72 Score=37.83 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 169 DQIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 169 ~~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..+.||.++|.|++. .|.++|..|++.|.+|.++.|+.
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~ 41 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK 41 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 357799888888765 79999999999999999998864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=82.62 E-value=0.5 Score=39.68 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=30.9
Q ss_pred CCeEEEEcC-CCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~-G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
-|+|+|.|+ |..|..++..|.+.|.+|+.+.|.+
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 368999997 9999999999999999999999875
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.57 E-value=0.32 Score=42.38 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=27.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhc----cCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASH----HSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~----~~~~V~~~~r~~ 206 (433)
-.|+|||+|.+|+=.|..+++ .|.+|.++.+.+
T Consensus 22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~ 58 (356)
T d1jnra2 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58 (356)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence 369999999999888888764 588999999764
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=82.45 E-value=0.46 Score=41.48 Aligned_cols=31 Identities=35% Similarity=0.558 Sum_probs=28.2
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++|||+|.+|+-+|..|++. .+|.++++.+
T Consensus 28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 699999999999999999986 7899999886
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=82.19 E-value=0.34 Score=41.35 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=27.5
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+=.|..+++.+ +|.++.+.+
T Consensus 9 DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~ 39 (305)
T d1chua2 9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKGP 39 (305)
T ss_dssp SEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred CEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence 5999999999999999988877 899998765
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=82.14 E-value=0.41 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=29.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
|+|.|+|+|.-|.-++.+..+.|-+|+++...+
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 689999999999999999999999999887654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=81.93 E-value=0.6 Score=39.39 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=30.0
Q ss_pred CeEEEEcC-CCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~-G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++|+|.|| |..|..++..|.+.|.+|+.+.|++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 37 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 37 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 46999996 9999999999999999999999875
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=81.52 E-value=0.31 Score=39.82 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.3
Q ss_pred eEEEEcCCCCHHHHHHHHhccC-CcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~ 206 (433)
.|+|||+|+.|+..|..+++.+ +.|.++.+..
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~ 37 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK 37 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 5899999999999999999986 5688877654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=81.48 E-value=0.55 Score=38.98 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++||.++|.|++. +|..+|..|++.|.+|.+..|+.
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 43 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA 43 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47799999999765 78899999999999999999875
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=81.40 E-value=0.91 Score=35.66 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+.|.|||.|-.|-..|..|...|.+|..+++..
T Consensus 49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 82 (193)
T d1mx3a1 49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL 82 (193)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred CceEEEeccccccccceeeeeccccceeeccCcc
Confidence 3689999999999999999999999999999754
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=81.29 E-value=0.89 Score=39.25 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=30.1
Q ss_pred CCCCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 5 NKNIKLCIIGG-GPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 5 ~~~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
++.+.|+|.|| |+.|...+.+|.++|++|..+.|.
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~ 44 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence 34579999998 899999999999999999877653
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=81.29 E-value=0.74 Score=38.85 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEcCC---CCHHHHHHHHhccCCcEEEEEecC
Q psy2398 169 DQIRNKRVLVVGAG---NSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 169 ~~~~~~~v~VvG~G---~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
-+++||.++|.|++ -+|..+|..|++.|.+|.+..|.+
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~ 44 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP 44 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 46789999999986 478999999999999999888764
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=81.21 E-value=0.91 Score=35.88 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
+.++|+|-|.|-.|..+|..|.+.|.+|++.|..
T Consensus 26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d 59 (201)
T d1c1da1 26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD 59 (201)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence 4478999999999999999999999999998854
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=81.15 E-value=0.74 Score=37.66 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++||.++|.|++. .|..+|..|++.|.+|.+..|+.
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE 39 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6799999999865 79999999999999999998875
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.15 E-value=0.73 Score=39.26 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=30.5
Q ss_pred CcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGG-GPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|+|.|| |+.|-.++..|.++|++|..+++...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 47999998 99999999999999999999998653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=81.10 E-value=0.88 Score=34.85 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=27.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEME 39 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~ 39 (433)
...|+|+|+|+.|+.++..++..|. .|+++++.
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~ 66 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK 66 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence 4579999999999999999888886 55666764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.85 E-value=0.78 Score=35.26 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=28.8
Q ss_pred CCcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...|+|+|| |+.|+.+...++..|.+|+++..++
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~ 63 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE 63 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEEeccccccccccccccccCcccccccccc
Confidence 357999996 9999999998888999998887543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.77 E-value=0.82 Score=39.24 Aligned_cols=33 Identities=21% Similarity=-0.049 Sum_probs=29.9
Q ss_pred CcEEEECC-ChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGG-GPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGa-G~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+.++|.|| |+.|..++..|.+.|++|+.+++..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 57888887 9999999999999999999999864
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.69 E-value=0.8 Score=37.75 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCC---CCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAG---NSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G---~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+++||.++|.|++ -.|..+|..|++.|.+|.+..|+.
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 4679999999974 379999999999999998877653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.49 E-value=0.81 Score=34.73 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++|.|||.|..|.-+|..|.+.|.+|+++.|++
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence 479999999999999999999999999887764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.41 E-value=0.96 Score=36.97 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=30.5
Q ss_pred CCCCCCCCcEEEECCCh-HHHHHHHHHHhcCCCeEEEccCC
Q psy2398 1 MKYKNKNIKLCIIGGGP-LGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~-~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|++ +.+.++|-||+- .|.++|+.|++.|.+|++.+++.
T Consensus 1 M~L--~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 1 MRL--KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp CTT--TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCC--CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 554 346777888754 89999999999999999999864
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.25 E-value=1 Score=38.06 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 164 DYKSPDQIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 164 ~~~~~~~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+|..+..++||.++|.|++. .|..+|..|++.|.+|.+..|+.
T Consensus 3 ~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~ 46 (297)
T d1yxma1 3 SYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL 46 (297)
T ss_dssp CSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35555568899999998754 68899999999999999998864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=80.21 E-value=0.55 Score=34.14 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=26.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+.++|+|.|..|..++..|. +.+++++|..+.
T Consensus 1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~ 32 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN 32 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence 36999999999999999996 457888887654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=80.16 E-value=0.69 Score=36.39 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=32.7
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 169 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 169 ~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.+..|++|.|||.|.+|..+|..+...|.+|....+.
T Consensus 45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 81 (193)
T d1mx3a1 45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY 81 (193)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred eeeeCceEEEeccccccccceeeeeccccceeeccCc
Confidence 3567999999999999999999999999999877654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=80.10 E-value=0.52 Score=35.94 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=29.0
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+|.|||.|..|.-+|..|.+.|.+|+.+.|++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 68999999999999999999999999887654
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=80.03 E-value=0.71 Score=38.28 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCCCeEEEEcC-CC--CHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGA-GN--SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~-G~--sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++||.++|.|+ |. .|..+|..|++.|.+|.+..|+.
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 57999999995 44 68899999999999999988764
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.01 E-value=1.1 Score=34.19 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+++||+++|||.+. .|.-+|..|+..+..|++++...
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t 73 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT 73 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence 57899999999865 79999999999999999988765
|