Psyllid ID: psy2429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MKSPYTYKLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKCVPN
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccEEEEEEEEEccccccccHHHHHHHHcEEEcccEEEcccccccccEEEEEEEEEEEEEcccccHHHHHHHHHHccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHcccccEEcEEEEEEEEEcccccccHHHHHHHHHccccccEEEEEEEEEEEEccEEEEEEEEEEEcccccHHHHHHHHcccccccHEEEEEHccc
Coil and Loop (DISEMBL)
mkspytyklfllpshvepaliaksniildvkpwgddtdmKEMEKQVRAIQMDGLlwgasklaplayginKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKCVPN
Flexible Loop (DISEMBL)
MKSPYTYKLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKCVPN
Low Complexity Region (SEG)
MKSPYTYKLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKCVPN
Disordered region (IsUnstruct)
****YTYKLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKCV**
Disordered Region (DISOPRED)
****YTY****************SNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKCVP*
Disordered Region (DISEMBL)
MKSPYTYKLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKCVPN
Disordered Region (DISPRO)
**SPYTYKLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKCVPN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSPYTYKLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLVFLKCVPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
P29522	222	Elongation factor 1-beta'	N/A	N/A	0.787	0.382	0.729	1e-30
O96827	222	Probable elongation facto	no	N/A	0.759	0.369	0.707	8e-29
P12262	207	Elongation factor 1-beta	N/A	N/A	0.777	0.405	0.678	2e-28
P32192	237	Elongation factor 1-delta	N/A	N/A	0.805	0.367	0.659	7e-28
Q6DET9	228	Elongation factor 1-beta	no	N/A	0.759	0.359	0.658	4e-26
P29693	265	Elongation factor 1-delta	N/A	N/A	0.870	0.354	0.574	5e-26
P29692	281	Elongation factor 1-delta	no	N/A	0.777	0.298	0.630	1e-25
Q4R3D4	281	Elongation factor 1-delta	N/A	N/A	0.787	0.302	0.623	1e-25
Q9VL18	256	Probable elongation facto	no	N/A	0.759	0.320	0.658	1e-25
Q9YGQ1	225	Elongation factor 1-beta	no	N/A	0.759	0.364	0.646	1e-25

>sp|P29522|EF1B2_BOMMO Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 72/85 (84%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +PALIAKS+I+LDVKPW D+TDMKEME QVR I+M+GLLWGASKL P+ YGINKLQI CV
Sbjct: 130 KPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCV 189

Query: 77  VEDDLVSVDALQESIQDIEDYVSLV 101
           +EDD VSVD L E IQ+ ED+V  V
Sbjct: 190 IEDDKVSVDLLTEKIQEFEDFVQSV 214

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.
Bombyx mori (taxid: 7091)

>sp|O96827|EF1B_DROME Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 69/82 (84%)

Query: 20  LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
           LIAKS+++LDVKPW D+TDMKEME  VR I+MDGLLWGASKL P+ YGINKLQI CV+ED
Sbjct: 133 LIAKSSVLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIED 192

Query: 80  DLVSVDALQESIQDIEDYVSLV 101
           D VS+D LQE I++ ED+V  V
Sbjct: 193 DKVSIDLLQEKIEEFEDFVQSV 214

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Drosophila melanogaster (taxid: 7227)

>sp|P12262|EF1B_ARTSA Elongation factor 1-beta OS=Artemia salina PE=1 SV=3

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 70/84 (83%)

Query: 18  PALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVV 77
           PA++AKS++ILD+KPW D+TDM EMEK VR++QMDGL+WGA+KL PLAYGI KL I CVV
Sbjct: 116 PAIVAKSSVILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVV 175

Query: 78  EDDLVSVDALQESIQDIEDYVSLV 101
           EDD VS+D LQE I + ED+V  V
Sbjct: 176 EDDKVSIDELQEKISEFEDFVQSV 199

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Artemia salina (taxid: 85549)

>sp|P32192|EF1D_ARTSA Elongation factor 1-delta OS=Artemia salina PE=1 SV=2

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 72/88 (81%), Gaps = 1/88 (1%)

Query: 14  SHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQI 73
           SH +P +IAKS+I+LD+KPW D+TDM  ME++VR+I MDGL+WGASKL P+A+G+ KLQI
Sbjct: 143 SH-KPTVIAKSSILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQI 201

Query: 74  SCVVEDDLVSVDALQESIQDIEDYVSLV 101
           SCVVEDD VSVD L E I+  EDYV  V
Sbjct: 202 SCVVEDDKVSVDELVEKIEAFEDYVQSV 229

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Artemia salina (taxid: 85549)

>sp|Q6DET9|EF1B_XENTR Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 68/82 (82%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +PALIAKS+I+LDVKPW D+TDM ++E+ VR+IQM+GL+WGASKL P+ YGI KLQI CV
Sbjct: 136 KPALIAKSSILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCV 195

Query: 77  VEDDLVSVDALQESIQDIEDYV 98
           VEDD V  D L+E+I   ED+V
Sbjct: 196 VEDDKVGTDVLEENITAFEDFV 217

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Xenopus tropicalis (taxid: 8364)

>sp|P29693|EF1D_XENLA Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 68/94 (72%)

Query: 8   KLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYG 67
           K +      +P +IAKS+I+LDVKPW D+TDM ++E+ VR +QMDGL+WG+SKL P+ YG
Sbjct: 164 KQYAEKKSKKPGVIAKSSILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYG 223

Query: 68  INKLQISCVVEDDLVSVDALQESIQDIEDYVSLV 101
           I KLQI CVVEDD V  D L+E I   EDYV  V
Sbjct: 224 IKKLQIQCVVEDDKVGTDILEEEITKFEDYVQSV 257

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Xenopus laevis (taxid: 8355)

>sp|P29692|EF1D_HUMAN Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 66/84 (78%)

Query: 18  PALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVV 77
           PAL+AKS+I+LDVKPW D+TDM ++E  VR+IQ+DGL+WGASKL P+ YGI KLQI CVV
Sbjct: 190 PALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVV 249

Query: 78  EDDLVSVDALQESIQDIEDYVSLV 101
           EDD V  D L+E I   E++V  V
Sbjct: 250 EDDKVGTDLLEEEITKFEEHVQSV 273

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Homo sapiens (taxid: 9606)

>sp|Q4R3D4|EF1D_MACFA Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 67/85 (78%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +PAL+AKS+I+LDVKPW D+TDM ++E  VR+IQ+DGL+WGASKL P+ YGI KLQI CV
Sbjct: 189 KPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCV 248

Query: 77  VEDDLVSVDALQESIQDIEDYVSLV 101
           VEDD V  D L+E I   E++V  V
Sbjct: 249 VEDDKVGTDLLEEEITKFEEHVQSV 273

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Macaca fascicularis (taxid: 9541)

>sp|Q9VL18|EF1D_DROME Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 65/82 (79%)

Query: 20  LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
           +IAKSNIILDVKPW D+TD+K ME ++R I  DGLLWGASK  P+A+GI KL ISCVVED
Sbjct: 167 IIAKSNIILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVED 226

Query: 80  DLVSVDALQESIQDIEDYVSLV 101
           D VS+D L E I+ +ED+V  V
Sbjct: 227 DKVSIDWLTEEIEKLEDFVQSV 248

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Drosophila melanogaster (taxid: 7227)

>sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 66/82 (80%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +PAL+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CV
Sbjct: 133 KPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCV 192

Query: 77  VEDDLVSVDALQESIQDIEDYV 98
           VEDD V  D L+E I   EDYV
Sbjct: 193 VEDDKVGTDMLEEQITAFEDYV 214

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
307193936	404	Probable elongation factor 1-delta [Harp	0.861	0.230	0.752	3e-32
121543779	269	putative elongation factor 1 delta [Maco	0.787	0.315	0.776	3e-31
332027905	391	Elongation factor 1-delta [Acromyrmex ec	0.861	0.237	0.709	4e-30
350409883	425	PREDICTED: probable elongation factor 1-	0.777	0.197	0.773	6e-30
389611107	223	elongation factor 1 beta [Papilio polyte	0.787	0.381	0.752	7e-30
170039062	225	elongation factor 1-beta [Culex quinquef	0.787	0.377	0.764	9e-30
160947856	223	elongation factor 1 beta' [Spodoptera ex	0.787	0.381	0.752	1e-29
389608501	223	elongation factor 1 beta [Papilio xuthus	0.787	0.381	0.752	1e-29
307191537	299	Elongation factor 1-delta [Camponotus fl	0.787	0.284	0.776	1e-29
45934557	224	elongation factor 1 beta [Aedes aegypti]	0.787	0.379	0.741	1e-29

>gi|307193936|gb|EFN76516.1| Probable elongation factor 1-delta [Harpegnathos saltator]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 77/93 (82%)

Query: 9   LFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGI 68
           LF   S  +PALIAKSNIILDVKPW D+TDMKEME +VR I+ DGLLWGASKL PLA+GI
Sbjct: 304 LFGSDSEAKPALIAKSNIILDVKPWDDETDMKEMENEVRKIETDGLLWGASKLVPLAFGI 363

Query: 69  NKLQISCVVEDDLVSVDALQESIQDIEDYVSLV 101
           +KLQISCVVEDD VSVD L E IQ+IEDYV  V
Sbjct: 364 HKLQISCVVEDDKVSVDWLTEKIQEIEDYVQSV 396

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543779|gb|ABM55559.1| putative elongation factor 1 delta [Maconellicoccus hirsutus]

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 75/85 (88%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +P LIAKSNIILDVKPW D+TDMKE+EK+VR + MDGL+WGASKL PLAYGI+KLQISCV
Sbjct: 177 KPVLIAKSNIILDVKPWDDETDMKELEKEVRKVAMDGLVWGASKLVPLAYGIHKLQISCV 236

Query: 77  VEDDLVSVDALQESIQDIEDYVSLV 101
           VED+ VSVD LQE +QDIEDYV  V
Sbjct: 237 VEDEKVSVDELQEKLQDIEDYVQSV 261

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027905|gb|EGI67960.1| Elongation factor 1-delta [Acromyrmex echinatior]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 78/93 (83%)

Query: 9   LFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGI 68
           LF   S  + ALIAKSNI+LDVKPW D+TDM++MEK+VR I++DGLLWGASKL PLA+GI
Sbjct: 291 LFGSDSEAKQALIAKSNIVLDVKPWDDETDMQDMEKEVRKIEIDGLLWGASKLIPLAFGI 350

Query: 69  NKLQISCVVEDDLVSVDALQESIQDIEDYVSLV 101
           +KLQISCVVEDD VSVD L E IQ+IE+YV  V
Sbjct: 351 HKLQISCVVEDDKVSVDWLMERIQNIEEYVQSV 383

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409883|ref|XP_003488875.1| PREDICTED: probable elongation factor 1-delta-like [Bombus impatiens]

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 72/84 (85%)

Query: 18  PALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVV 77
           P LIAKSNIILDVKPW D+TDMK ME++VR I+ DGLLWGASKL PLA+GI+KLQISCVV
Sbjct: 334 PVLIAKSNIILDVKPWDDETDMKAMEEEVRKIETDGLLWGASKLVPLAFGIHKLQISCVV 393

Query: 78  EDDLVSVDALQESIQDIEDYVSLV 101
           EDD VSVD L E IQ+IEDYV  V
Sbjct: 394 EDDKVSVDWLTEKIQEIEDYVQSV 417

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611107|dbj|BAM19164.1| elongation factor 1 beta [Papilio polytes]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 72/85 (84%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +PALIAKS+IILDVKPW D+TDMKEME QVR I+MDGLLWGASKL P+ YGINKLQI CV
Sbjct: 131 KPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGINKLQIMCV 190

Query: 77  VEDDLVSVDALQESIQDIEDYVSLV 101
           +EDD VSVD L E IQ+ ED+V  V
Sbjct: 191 IEDDKVSVDLLTEKIQEFEDFVQSV 215

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039062|ref|XP_001847365.1| elongation factor 1-beta [Culex quinquefasciatus] gi|167862674|gb|EDS26057.1| elongation factor 1-beta [Culex quinquefasciatus]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 73/85 (85%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +PALIAKS+IILDVKPW D+TDMKEMEK VR+I+MDGLLWGA+KL P+ YGI KLQI CV
Sbjct: 133 KPALIAKSSIILDVKPWDDETDMKEMEKNVRSIEMDGLLWGAAKLVPVGYGILKLQICCV 192

Query: 77  VEDDLVSVDALQESIQDIEDYVSLV 101
           +EDD VSVD LQE IQD EDYV  V
Sbjct: 193 IEDDKVSVDELQEKIQDFEDYVQSV 217

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|160947856|gb|ABX54737.1| elongation factor 1 beta' [Spodoptera exigua]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 72/85 (84%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +PALIAKS+IILDVKPW D+TDMKEME QVR I+MDGLLWGASKL P+ YGINKLQI CV
Sbjct: 131 KPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGINKLQIMCV 190

Query: 77  VEDDLVSVDALQESIQDIEDYVSLV 101
           +EDD VSVD L E IQ+ ED+V  V
Sbjct: 191 IEDDKVSVDLLTEKIQEFEDFVQSV 215

Source: Spodoptera exigua

Species: Spodoptera exigua

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608501|dbj|BAM17860.1| elongation factor 1 beta [Papilio xuthus]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 72/85 (84%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +PALIAKS+IILDVKPW D+TDMKEME QVR I+MDGLLWGASKL P+ YGINKLQI CV
Sbjct: 131 KPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGINKLQIMCV 190

Query: 77  VEDDLVSVDALQESIQDIEDYVSLV 101
           +EDD VSVD L E IQ+ ED+V  V
Sbjct: 191 IEDDKVSVDLLTEKIQEFEDFVQSV 215

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191537|gb|EFN75040.1| Elongation factor 1-delta [Camponotus floridanus]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 72/85 (84%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +P LIAKSNIILDVKPW D+TDMKEME  VR I+ DGLLWGASKL PLAYGI+KLQISCV
Sbjct: 207 KPVLIAKSNIILDVKPWDDETDMKEMENAVRKIETDGLLWGASKLVPLAYGIHKLQISCV 266

Query: 77  VEDDLVSVDALQESIQDIEDYVSLV 101
           VEDD VSVD L E IQ++EDYV  V
Sbjct: 267 VEDDKVSVDWLVEQIQELEDYVQSV 291

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45934557|gb|AAS79338.1| elongation factor 1 beta [Aedes aegypti]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 73/85 (85%)

Query: 17  EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
           +PALIAKS+IILDVKPW D+TDM EM+K VR+I+MDGLLWGA+KL P+ YGINKLQI CV
Sbjct: 132 KPALIAKSSIILDVKPWDDETDMNEMQKNVRSIEMDGLLWGAAKLVPVGYGINKLQICCV 191

Query: 77  VEDDLVSVDALQESIQDIEDYVSLV 101
           +EDD VSVD LQE IQD ED+V  V
Sbjct: 192 IEDDKVSVDELQEKIQDFEDFVQSV 216

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
FB|FBgn0028737	222	Ef1beta "Elongation factor 1 b	0.787	0.382	0.705	7.9e-30
ZFIN|ZDB-GENE-040426-2740	267	eef1da "elongation factor-1, d	0.787	0.318	0.670	2.8e-27
UNIPROTKB|E1BZG4	287	EEF1D "Uncharacterized protein	0.787	0.296	0.658	1.5e-26
ZFIN|ZDB-GENE-030131-6544	578	eef1db "elongation factor-1, d	0.787	0.147	0.670	2.9e-26
UNIPROTKB|Q9YGQ1	225	EEF1B "Elongation factor 1-bet	0.759	0.364	0.646	2.2e-25
UNIPROTKB|P24534	225	EEF1B2 "Elongation factor 1-be	0.759	0.364	0.646	2.2e-25
UNIPROTKB|F1SHD6	225	EEF1B2 "Uncharacterized protei	0.759	0.364	0.646	2.2e-25
ZFIN|ZDB-GENE-030131-7310	225	eef1b2 "eukaryotic translation	0.759	0.364	0.658	2.2e-25
FB|FBgn0032198	256	eEF1delta "eEF1delta" [Drosoph	0.759	0.320	0.658	2.9e-25
UNIPROTKB|E9PQZ1	238	EEF1D "Elongation factor 1-del	0.787	0.357	0.623	2.9e-25

FB|FBgn0028737 Ef1beta "Elongation factor 1 beta" [Drosophila melanogaster (taxid:7227)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 60/85 (70%), Positives = 72/85 (84%)

Query:    17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
             +PALIAKS+++LDVKPW D+TDMKEME  VR I+MDGLLWGASKL P+ YGINKLQI CV
Sbjct:   130 KPALIAKSSVLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCV 189

Query:    77 VEDDLVSVDALQESIQDIEDYVSLV 101
             +EDD VS+D LQE I++ ED+V  V
Sbjct:   190 IEDDKVSIDLLQEKIEEFEDFVQSV 214

GO:0003747 "translation release factor activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS;NAS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS;NAS

GO:0006414 "translational elongation" evidence=IEA;ISS;NAS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=NAS

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-040426-2740 eef1da "elongation factor-1, delta, a" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 57/85 (67%), Positives = 69/85 (81%)

Query:    17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
             +PALIAKS+I+LDVKPW D+TDM ++E+ VR++QMDGLLWGASKL P+ YGI KLQI+CV
Sbjct:   175 KPALIAKSSILLDVKPWDDETDMSKLEECVRSVQMDGLLWGASKLVPVGYGIKKLQINCV 234

Query:    77 VEDDLVSVDALQESIQDIEDYVSLV 101
             VEDD V  D L+E I   EDYV  V
Sbjct:   235 VEDDKVGTDILEEEITQFEDYVQSV 259

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|E1BZG4 EEF1D "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 56/85 (65%), Positives = 67/85 (78%)

Query:    17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
             +P LIAKS+I+LDVKPW D+TDM +ME+ VR++QMDGL+WGASKL P+ YGI KLQI CV
Sbjct:   195 KPGLIAKSSILLDVKPWDDETDMAKMEECVRSVQMDGLVWGASKLVPVGYGIKKLQIQCV 254

Query:    77 VEDDLVSVDALQESIQDIEDYVSLV 101
             VEDD V  D L+E I   EDYV  V
Sbjct:   255 VEDDKVGTDILEEEITKFEDYVQSV 279

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

ZFIN|ZDB-GENE-030131-6544 eef1db "elongation factor-1, delta, b" [Danio rerio (taxid:7955)]

 Score = 303 (111.7 bits), Expect = 2.9e-26, P = 2.9e-26
 Identities = 57/85 (67%), Positives = 69/85 (81%)

Query:    17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
             +PALIAKS+I+LDVKPW D+TDM ++E+ VR++QMDGLLWGASKL P+ YGI KLQI+CV
Sbjct:   486 KPALIAKSSILLDVKPWDDETDMSKLEECVRSVQMDGLLWGASKLMPVGYGIKKLQINCV 545

Query:    77 VEDDLVSVDALQESIQDIEDYVSLV 101
             VEDD V  D L+E I   EDYV  V
Sbjct:   546 VEDDKVGTDFLEEEITKFEDYVQSV 570

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q9YGQ1 EEF1B "Elongation factor 1-beta" [Gallus gallus (taxid:9031)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 53/82 (64%), Positives = 66/82 (80%)

Query:    17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
             +PAL+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CV
Sbjct:   133 KPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCV 192

Query:    77 VEDDLVSVDALQESIQDIEDYV 98
             VEDD V  D L+E I   EDYV
Sbjct:   193 VEDDKVGTDMLEEQITAFEDYV 214

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

UNIPROTKB|P24534 EEF1B2 "Elongation factor 1-beta" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 53/82 (64%), Positives = 66/82 (80%)

Query:    17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
             +PAL+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CV
Sbjct:   133 KPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCV 192

Query:    77 VEDDLVSVDALQESIQDIEDYV 98
             VEDD V  D L+E I   EDYV
Sbjct:   193 VEDDKVGTDMLEEQITAFEDYV 214

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=NAS

GO:0006414 "translational elongation" evidence=NAS;TAS

GO:0003746 "translation elongation factor activity" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SHD6 EEF1B2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 53/82 (64%), Positives = 66/82 (80%)

Query:    17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
             +PAL+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CV
Sbjct:   133 KPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCV 192

Query:    77 VEDDLVSVDALQESIQDIEDYV 98
             VEDD V  D L+E I   EDYV
Sbjct:   193 VEDDKVGTDMLEEQITAFEDYV 214

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

ZFIN|ZDB-GENE-030131-7310 eef1b2 "eukaryotic translation elongation factor 1 beta 2" [Danio rerio (taxid:7955)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 54/82 (65%), Positives = 67/82 (81%)

Query:    17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
             +PALIAKS+I+LDVKPW D+TDM ++E+ VR+IQ+DGL+WG SKL P+ YGI KLQI+CV
Sbjct:   133 KPALIAKSSILLDVKPWDDETDMAKLEECVRSIQLDGLVWGQSKLLPVGYGIKKLQIACV 192

Query:    77 VEDDLVSVDALQESIQDIEDYV 98
             VEDD V  D L+E I   EDYV
Sbjct:   193 VEDDKVGTDQLEELITAFEDYV 214

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0006412 "translation" evidence=IEA

FB|FBgn0032198 eEF1delta "eEF1delta" [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 54/82 (65%), Positives = 65/82 (79%)

Query:    20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
             +IAKSNIILDVKPW D+TD+K ME ++R I  DGLLWGASK  P+A+GI KL ISCVVED
Sbjct:   167 IIAKSNIILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVED 226

Query:    80 DLVSVDALQESIQDIEDYVSLV 101
             D VS+D L E I+ +ED+V  V
Sbjct:   227 DKVSIDWLTEEIEKLEDFVQSV 248

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS;NAS

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS;NAS

GO:0006414 "translational elongation" evidence=IEA;ISS;NAS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=NAS

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|E9PQZ1 EEF1D "Elongation factor 1-delta" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 53/85 (62%), Positives = 67/85 (78%)

Query:    17 EPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCV 76
             +PAL+AKS+I+LDVKPW D+TDM ++E  VR+IQ+DGL+WGASKL P+ YGI KLQI CV
Sbjct:   146 KPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCV 205

Query:    77 VEDDLVSVDALQESIQDIEDYVSLV 101
             VEDD V  D L+E I   E++V  V
Sbjct:   206 VEDDKVGTDLLEEEITKFEEHVQSV 230

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74173	EF1B_SCHPO	No assigned EC number	0.6153	0.7222	0.3644	yes	N/A
Q9GRF8	EF1B_DICDI	No assigned EC number	0.6179	0.8055	0.4027	yes	N/A
P53787	EF1D_RABIT	No assigned EC number	0.6190	0.7777	0.3	yes	N/A
P34826	EF1B_RABIT	No assigned EC number	0.6463	0.7592	0.3644	yes	N/A
Q40680	EF1D1_ORYSJ	No assigned EC number	0.5921	0.6481	0.3056	yes	N/A
P32471	EF1B_YEAST	No assigned EC number	0.5753	0.6759	0.3543	yes	N/A
Q9SI20	EF1D2_ARATH	No assigned EC number	0.5375	0.7129	0.3333	yes	N/A
Q9U2H9	EF1B2_CAEEL	No assigned EC number	0.6341	0.75	0.3079	yes	N/A
A5D989	EF1D_BOVIN	No assigned EC number	0.6071	0.7777	0.3	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	108
cd00292	88	cd00292, EF1B, Elongation factor 1 beta (EF1B) gua	3e-34
pfam00736	87	pfam00736, EF1_GNE, EF-1 guanine nucleotide exchan	4e-29
smart00888	88	smart00888, EF1_GNE, EF-1 guanine nucleotide excha	3e-27
COG2092	88	COG2092, EFB1, Translation elongation factor EF-1b	4e-20

>gnl|CDD|238181 cd00292, EF1B, Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain

 Score =  113 bits (284), Expect = 3e-34
 Identities = 44/79 (55%), Positives = 59/79 (74%), Gaps = 1/79 (1%)

Query: 21 IAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDD 80
          +AKS ++L VKPW D+ D+ E+E+++RAI MDGLLWG SKL P+A+G+  LQI CVVEDD
Sbjct: 1  MAKSLVVLKVKPWDDEVDLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDD 60

Query: 81 LVSVDALQESIQDIEDYVS 99
              D L+E+I + ED V 
Sbjct: 61 EGGTDELEEAISE-EDGVQ 78

EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction. Length = 88

>gnl|CDD|201421 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain

 Score = 99.9 bits (250), Expect = 4e-29
 Identities = 48/80 (60%), Positives = 62/80 (77%), Gaps = 3/80 (3%)

Query: 24  SNIILDVKPWGDDTDMKEMEKQV-RAIQMDGLLWG-ASKLAPLAYGINKLQISCVVEDDL 81
           S+++L VKPW D+TD++E+EK+V R I MDGL+WG ASKL P+A+G+ KLQISCVVEDD 
Sbjct: 1   SSVVLKVKPWDDETDLEELEKKVKRKIPMDGLVWGKASKLEPIAFGLKKLQISCVVEDDK 60

Query: 82  VSVDALQESIQDIEDYVSLV 101
           V  D L+E+I   ED V  V
Sbjct: 61  VGTDELEEAI-AFEDGVQSV 79

This family is the guanine nucleotide exchange domain of EF-1 beta and EF-1 delta chains. Length = 87

>gnl|CDD|214886 smart00888, EF1_GNE, EF-1 guanine nucleotide exchange domain

 Score = 95.3 bits (238), Expect = 3e-27
 Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 23 KSNIILDVKPWGDDTDMKEMEKQVRAI-QMDGLLWGAS-KLAPLAYGINKLQISCVVEDD 80
          K  ++L V P  D+ D++E+E++V++I  MDGLLWGA  +L P+A+G+  LQI  VVEDD
Sbjct: 1  KVLVVLKVMPESDEVDLEELEEKVKSILPMDGLLWGAGIELEPIAFGLKALQIYVVVEDD 60

Query: 81 LVSVDALQESIQDIED 96
              D L+E+I+++E 
Sbjct: 61 EGGTDELEEAIEEVEG 76

Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta). This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). Length = 88

>gnl|CDD|225003 COG2092, EFB1, Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]

 Score = 77.0 bits (190), Expect = 4e-20
 Identities = 21/75 (28%), Positives = 44/75 (58%)

Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
          A   ++L V P   + D++E+E++++    +G      +  P+A+G+  L++  VVED  
Sbjct: 2  ADVLVVLKVMPDDPEVDLEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDKE 61

Query: 82 VSVDALQESIQDIED 96
             DAL+E+++++E 
Sbjct: 62 GGTDALEEALEEVEG 76

Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
KOG1668|consensus	231		100.0
cd00292	88	EF1B Elongation factor 1 beta (EF1B) guanine nucle	100.0
PRK00435	88	ef1B elongation factor 1-beta; Validated	100.0
PF00736	89	EF1_GNE: EF-1 guanine nucleotide exchange domain;	100.0
TIGR00489	88	aEF-1_beta translation elongation factor aEF-1 bet	100.0
COG2092	88	EFB1 Translation elongation factor EF-1beta [Trans	99.97

>KOG1668|consensus

Probab=100.00  E-value=4e-39  Score=250.62  Aligned_cols=102  Identities=54%  Similarity=0.872  Sum_probs=99.0

Q ss_pred             hhhhcCCCCCCcccceeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhH
Q psy2429           7 YKLFLLPSHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDA   86 (108)
Q Consensus         7 ~~~~~~kk~~k~~~~aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~   86 (108)
                      +.+|+.||++|+.+++||+|+|+|||||+||||.+|+.+||+|+|+||.||.++++|||||||+|||+|+|+||+||+|.
T Consensus       129 la~y~~kka~k~~~iakssvlLdvkpwddeTdm~~~e~~vrsi~~~gl~wgasklvpvGygikKlqi~~vveddkvs~D~  208 (231)
T KOG1668|consen  129 LAAYAAKKAKKPPPIAKSSVLLDVKPWDDETDMKELEECVRSIEMDGLVWGASKLVPVGYGIKKLQIQCVVEDDKVSIDD  208 (231)
T ss_pred             hhhhhHHhccCCcccccceEEeecCCcCCCCCHHHHHHHHHHhhhccceeccccccccccceeeEEEEEEEEcCccccch
Confidence            57899999999777999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCceeEEeeeeCC
Q psy2429          87 LQESIQDIEDYVSLVFLKCVPN  108 (108)
Q Consensus        87 lee~i~~~ed~VqSvdI~~~~~  108 (108)
                      ++|.|..+||+||||||.+||.
T Consensus       209 l~e~i~~~e~~Vqs~di~afnk  230 (231)
T KOG1668|consen  209 LIEEITKFEDHVQSVDIAAFNK  230 (231)
T ss_pred             hHHHhhhhhcceeeehhhhccc
Confidence            9999999999999999999983

>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain

Probab=100.00  E-value=7.7e-37  Score=207.95  Aligned_cols=86  Identities=50%  Similarity=0.867  Sum_probs=83.4

Q ss_pred             ceeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCcee
Q psy2429          21 IAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSL  100 (108)
Q Consensus        21 ~aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqS  100 (108)
                      .|||+++|+|||||+||||++|+++||+++++||.||+++++||||||+|||+.|+|+|++||||+|+++|++++ +|||
T Consensus         1 mak~~vvl~V~P~~~e~Dl~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~i~~vv~D~~~~td~lee~i~~~d-~Vqs   79 (88)
T cd00292           1 MAKSLVVLKVKPWDDEVDLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDELEEAISEED-GVQS   79 (88)
T ss_pred             CceEEEEEEEecCCCCcCHHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEEEEEEEEeCCcCcHHHHHHHhccC-CceE
Confidence            379999999999999999999999999999999999999999999999999999999999999999999999975 8999


Q ss_pred             EEeeeeC
Q psy2429         101 VFLKCVP  107 (108)
Q Consensus       101 vdI~~~~  107 (108)
                      |||++|+
T Consensus        80 veI~~~~   86 (88)
T cd00292          80 VDVEAFN   86 (88)
T ss_pred             EEEEEEE
Confidence            9999996

EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.

>PRK00435 ef1B elongation factor 1-beta; Validated

Probab=100.00  E-value=1e-36  Score=207.68  Aligned_cols=85  Identities=19%  Similarity=0.407  Sum_probs=83.1

Q ss_pred             eeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeE
Q psy2429          22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV  101 (108)
Q Consensus        22 aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSv  101 (108)
                      ++++++|+|||||+||||++|+++||+++++||.||+++++||||||++||++|+|+|++||||+|+|+|++||| |||+
T Consensus         2 ~~v~vv~~V~P~d~e~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~td~lee~i~~~e~-Vqsv   80 (88)
T PRK00435          2 GDVLAVLKVMPESPEVDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGGTEPVEEAFANVEG-VESV   80 (88)
T ss_pred             ceEEEEEEECCCCCCcCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcCcHHHHHHHhccCC-CcEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999996 9999


Q ss_pred             EeeeeC
Q psy2429         102 FLKCVP  107 (108)
Q Consensus       102 dI~~~~  107 (108)
                      ||++|.
T Consensus        81 ei~~~~   86 (88)
T PRK00435         81 EVEEVS   86 (88)
T ss_pred             EEEEEe
Confidence            999985

>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=100.00  E-value=8.9e-35  Score=197.95  Aligned_cols=85  Identities=48%  Similarity=0.869  Sum_probs=79.0

Q ss_pred             eeeEEEEEeeCCCccCHHHHHHHH-HhhhcCCeeEe-eeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCcee
Q psy2429          23 KSNIILDVKPWGDDTDMKEMEKQV-RAIQMDGLLWG-ASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSL  100 (108)
Q Consensus        23 Ks~vvl~VkP~d~etDl~~L~~~I-r~i~~eGl~wg-~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqS  100 (108)
                      ||+++|+|||||+||||++|+++| |++.++|+.|| +++++||||||++|++.|+|+|++||+|+|+++|.+++++|||
T Consensus         1 ks~vv~~V~P~d~e~Dl~~l~~~Ik~~i~~~gl~w~~~~~~epIaFGlk~L~v~~vv~D~~~~~d~lee~i~~~~e~Vqs   80 (89)
T PF00736_consen    1 KSSVVLKVKPWDDETDLEKLEKKIKRKIPMEGLKWGEKSKEEPIAFGLKALQVSCVVEDDEGSTDDLEEAIESFEEGVQS   80 (89)
T ss_dssp             EEEEEEEEEESSTTS-HHHHHHHHHHHS-TTTEEEEEEEEEEEECTTEEEEEEEEEECTTTCGHHHHHHHHTTCTTTEEE
T ss_pred             CceEEEEEeeCCCcccHHHHHHHHHHhchhcceeeeeeeeeeeecccEEEEEEEEEEEcCccChHHHHHHHHhcCCCccE
Confidence            789999999999999999999999 68999999999 7999999999999999999999999999999999666679999


Q ss_pred             EEeeeeC
Q psy2429         101 VFLKCVP  107 (108)
Q Consensus       101 vdI~~~~  107 (108)
                      |||++|+
T Consensus        81 vei~~~~   87 (89)
T PF00736_consen   81 VEIESFN   87 (89)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999996

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 2YY3_B 1GH8_A 1B64_A 1IJE_B 1IJF_B 1F60_B 1G7C_B 2B7B_B 2B7C_B.

>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta

Probab=100.00  E-value=2.1e-34  Score=196.24  Aligned_cols=85  Identities=21%  Similarity=0.302  Sum_probs=83.1

Q ss_pred             eeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeE
Q psy2429          22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV  101 (108)
Q Consensus        22 aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSv  101 (108)
                      ||++++|+|||||+|+||++|+++||+++++|+.|++++.+||||||++|++.|+|+|++||||+||++|++|| +|||+
T Consensus         2 ~~v~~~~kV~P~s~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g~td~lee~i~~ve-~V~sv   80 (88)
T TIGR00489         2 GDVVAKIKVMPESPDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEGGTEAAEESLSGIE-GVESV   80 (88)
T ss_pred             ceEEEEEEECCCCCccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCcChHHHHHHHhcCC-CccEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998 69999


Q ss_pred             EeeeeC
Q psy2429         102 FLKCVP  107 (108)
Q Consensus       102 dI~~~~  107 (108)
                      +|++|.
T Consensus        81 ev~~~~   86 (88)
T TIGR00489        81 EVTDVR   86 (88)
T ss_pred             EEEEEE
Confidence            999985

This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.

>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=8e-32  Score=183.65  Aligned_cols=85  Identities=28%  Similarity=0.441  Sum_probs=82.3

Q ss_pred             eeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeE
Q psy2429          22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV  101 (108)
Q Consensus        22 aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSv  101 (108)
                      |+++++|+|||||+|+||++|+++||+++|+|++|+++..+|||||||||++.|+|+|++||+|++|+.|+++| +|||+
T Consensus         2 ~~Vlv~lkV~P~d~evdl~~L~~~ik~~l~~g~~~~~~~~epIaFGLkal~l~vvv~D~Eg~td~~ee~l~~ve-gV~sv   80 (88)
T COG2092           2 ADVLVVLKVMPDDPEVDLEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDKEGGTDALEEALEEVE-GVESV   80 (88)
T ss_pred             cceEEEEEecCCCCCCCHHHHHHHHHHhccccceeccceeEeeeeeeeeEEEEEEEcccccCcHHHHHHHhhcc-CcceE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998 69999


Q ss_pred             EeeeeC
Q psy2429         102 FLKCVP  107 (108)
Q Consensus       102 dI~~~~  107 (108)
                      +++++.
T Consensus        81 eve~vs   86 (88)
T COG2092          81 EVENVS   86 (88)
T ss_pred             EEEEEE
Confidence            999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
1b64_A	91	Solution Structure Of The Guanine Nucleotide Exchan		6e-25
1f60_B	94	Crystal Structure Of The Yeast Elongation Factor Co		9e-22
2b7b_B	94	Yeast Guanine Nucleotide Exchange Factor Eef1balpha		9e-22
1ije_B	90	Nucleotide Exchange Intermediates In The Eef1a-eef1		9e-22

>pdb|1B64|A Chain A, Solution Structure Of The Guanine Nucleotide Exchange Factor Domain From Human Elongation Factor-One Beta, Nmr, 20 Structures Length = 91

Iteration: 1
 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 63/79 (79%)
Query: 20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
          L+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CVVED
Sbjct: 2  LVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVED 61
Query: 80 DLVSVDALQESIQDIEDYV 98
          D V  D L+E I   EDYV
Sbjct: 62 DKVGTDMLEEQITAFEDYV 80

>pdb|1F60|B Chain B, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 94

Iteration: 1
 Score = 98.6 bits (244), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 62/77 (80%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
          AKS + LDVKPW D+T+++EM   V+AI+M+GL WGA +  P+ +GI KLQI+CVVEDD 
Sbjct: 7  AKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDK 66
Query: 82 VSVDALQESIQDIEDYV 98
          VS+D LQ+SI++ ED+V
Sbjct: 67 VSLDDLQQSIEEDEDHV 83

>pdb|2B7B|B Chain B, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a Mutant In Complex With Eef1a And Gdp Length = 94

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 62/77 (80%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
          AKS + LDVKPW D+T+++EM   V+AI+M+GL WGA +  P+ +GI KLQI+CVVEDD 
Sbjct: 7  AKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDK 66
Query: 82 VSVDALQESIQDIEDYV 98
          VS+D LQ+SI++ ED+V
Sbjct: 67 VSLDDLQQSIEEDEDHV 83

>pdb|1IJE|B Chain B, Nucleotide Exchange Intermediates In The Eef1a-eef1ba Complex Length = 90

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 62/77 (80%)
Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
          AKS + LDVKPW D+T+++EM   V+AI+M+GL WGA +  P+ +GI KLQI+CVVEDD 
Sbjct: 3  AKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDK 62
Query: 82 VSVDALQESIQDIEDYV 98
          VS+D LQ+SI++ ED+V
Sbjct: 63 VSLDDLQQSIEEDEDHV 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
1f60_B	94	Elongation factor EEF1BA; protein-protein complex,	3e-38
1b64_A	91	Elongation factor 1-beta; guanine nucleotide excha	2e-37
1gh8_A	89	Translation elongation factor 1BETA; alpha-beta sa	3e-26
2yy3_A	91	Elongation factor 1-beta; structural genomics, NPP	4e-17

>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B* Length = 94

 Score =  122 bits (308), Expect = 3e-38
 Identities = 45/81 (55%), Positives = 62/81 (76%)

Query: 18 PALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVV 77
              AKS + LDVKPW D+T+++EM   V+AI+M+GL WGA +  P+ +GI KLQI+CVV
Sbjct: 3  AKPAAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVV 62

Query: 78 EDDLVSVDALQESIQDIEDYV 98
          EDD VS+D LQ+SI++ ED+V
Sbjct: 63 EDDKVSLDDLQQSIEEDEDHV 83

>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1 Length = 91

 Score =  120 bits (303), Expect = 2e-37
 Identities = 51/79 (64%), Positives = 63/79 (79%)

Query: 20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
          L+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CVVED
Sbjct: 2  LVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVED 61

Query: 80 DLVSVDALQESIQDIEDYV 98
          D V  D L+E I   EDYV
Sbjct: 62 DKVGTDMLEEQITAFEDYV 80

>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1 Length = 89

 Score = 92.0 bits (229), Expect = 3e-26
 Identities = 18/75 (24%), Positives = 34/75 (45%)

Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
                + V P   D D++ ++K+++    +G         P+A+G+  L +  VV D  
Sbjct: 2  GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAE 61

Query: 82 VSVDALQESIQDIED 96
             +A +ES+  IE 
Sbjct: 62 GGTEAAEESLSGIEG 76

>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii} Length = 91

 Score = 69.0 bits (169), Expect = 4e-17
 Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 26 IILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL-VSV 84
           ++ V P   D ++ E+E++++ +  +       +  P+A+G+  L+   +  D+   S 
Sbjct: 8  GVIRVMPTDPDVNLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSF 67

Query: 85 DALQESIQDIED 96
          D + E  +++E+
Sbjct: 68 DEVAEKFEEVEN 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
1f60_B	94	Elongation factor EEF1BA; protein-protein complex,	100.0
1b64_A	91	Elongation factor 1-beta; guanine nucleotide excha	100.0
1gh8_A	89	Translation elongation factor 1BETA; alpha-beta sa	100.0
2yy3_A	91	Elongation factor 1-beta; structural genomics, NPP	100.0

>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*

Probab=100.00  E-value=1.4e-42  Score=237.95  Aligned_cols=92  Identities=50%  Similarity=0.855  Sum_probs=86.4

Q ss_pred             CCCCcccceeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHh
Q psy2429          14 SHVEPALIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQD   93 (108)
Q Consensus        14 k~~k~~~~aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~   93 (108)
                      |++||  +|||+++|+|||||+||||++|+++||+++++||.||+++++||||||++||++|+|+|++||||+|+|+|++
T Consensus         1 ~~~k~--~~ks~v~l~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkL~i~~vveDd~~~tD~lee~i~~   78 (94)
T 1f60_B            1 KPAKP--AAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQSIEE   78 (94)
T ss_dssp             ----C--CCEEEEEEEEEESSTTSCHHHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEETTTCCHHHHHHHHHT
T ss_pred             CCCCc--eeeEEEEEEEccCCCCcCHHHHHHHHHHhCcCCcEEEEEEEEEEeeeeEEEEEEEEEECCccChHHHHHHHHh
Confidence            45554  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEEeeeeC
Q psy2429          94 IEDYVSLVFLKCVP  107 (108)
Q Consensus        94 ~ed~VqSvdI~~~~  107 (108)
                      |||+||||||++|+
T Consensus        79 ~ed~VqSvdI~~~~   92 (94)
T 1f60_B           79 DEDHVQSTDIAAMQ   92 (94)
T ss_dssp             CTTTEEEEEEEEEE
T ss_pred             ccCceeEEEEEEEE
Confidence            99889999999996

>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1

Probab=100.00  E-value=2.9e-41  Score=230.17  Aligned_cols=88  Identities=58%  Similarity=0.979  Sum_probs=86.3

Q ss_pred             cceeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCce
Q psy2429          20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVS   99 (108)
Q Consensus        20 ~~aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~Vq   99 (108)
                      ++|||+++|+|||||+||||++|+++||+++++||.||+++++||||||++||++|+|+|+++|+|+|+|+|++|||+||
T Consensus         2 ~~~ks~vvl~VkP~d~etDl~~L~~~Vr~i~~~Gl~wg~~k~~piafGikkL~i~~vveDd~v~tD~lee~i~~~ed~Vq   81 (91)
T 1b64_A            2 LVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ   81 (91)
T ss_dssp             CSSCEEEEEEEEESSTTSCHHHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHHHTTCTTTEE
T ss_pred             ccceEEEEEEEccCCCCcCHHHHHHHHHHhCcCCcEEEEEEEEEEEeeEEEEEEEEEEECCccChHHHHHHHHhccCcee
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             eEEeeeeC
Q psy2429         100 LVFLKCVP  107 (108)
Q Consensus       100 SvdI~~~~  107 (108)
                      ||||++|+
T Consensus        82 SvdI~~~~   89 (91)
T 1b64_A           82 SMDVAAFN   89 (91)
T ss_dssp             EEEESCCB
T ss_pred             EEEEEEEE
Confidence            99999997

>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1

Probab=100.00  E-value=3.4e-39  Score=219.16  Aligned_cols=85  Identities=25%  Similarity=0.333  Sum_probs=83.3

Q ss_pred             eeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeE
Q psy2429          22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV  101 (108)
Q Consensus        22 aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSv  101 (108)
                      +||+++|+|||||+||||++|+++||+++++||.||+++++||||||+|||++|+|+|+++|||+|||+|++||| ||||
T Consensus         2 ~kv~v~l~V~P~d~etDl~~L~~~vk~~~~~gl~w~~~k~~piafGlk~L~i~~vveD~~~~td~lee~i~~~e~-Vqsv   80 (89)
T 1gh8_A            2 GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEESLSGIEG-VSNI   80 (89)
T ss_dssp             CCEEEEEEEEESSSCCCHHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHHHTTSCS-SEEE
T ss_pred             ceEEEEEEEccCCCCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEcCCcChHHHHHHHhccCC-ccEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999985 9999


Q ss_pred             EeeeeC
Q psy2429         102 FLKCVP  107 (108)
Q Consensus       102 dI~~~~  107 (108)
                      ||++|+
T Consensus        81 dv~~~~   86 (89)
T 1gh8_A           81 EVTDVR   86 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999996

>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.1e-38  Score=216.11  Aligned_cols=85  Identities=19%  Similarity=0.306  Sum_probs=83.4

Q ss_pred             eeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCc-ChhHHHHHHHhcCCCcee
Q psy2429          22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLV-SVDALQESIQDIEDYVSL  100 (108)
Q Consensus        22 aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~-~~d~lee~i~~~ed~VqS  100 (108)
                      +||+++|+|||||+||||++|+++||+++++||.||+++++||||||+|||++|+|+|++| |||+|||+|++|| +|||
T Consensus         4 ~kv~v~l~V~P~d~etDl~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~i~~~e-~VqS   82 (91)
T 2yy3_A            4 FNLVGVIRVMPTDPDVNLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEKFEEVE-NVES   82 (91)
T ss_dssp             CCEEEEEEEEESSTTSCHHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHHHHHST-TEEE
T ss_pred             ceEEEEEEECCCCCCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHHHhcCC-CceE
Confidence            6899999999999999999999999999999999999999999999999999999999999 9999999999998 6999


Q ss_pred             EEeeeeC
Q psy2429         101 VFLKCVP  107 (108)
Q Consensus       101 vdI~~~~  107 (108)
                      |||++|+
T Consensus        83 vdV~~~~   89 (91)
T 2yy3_A           83 AEVETVS   89 (91)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d1f60b_	90	d.58.12.1 (B:) Guanine nucleotide exchange factor	1e-37
d1b64a_	91	d.58.12.1 (A:) Guanine nucleotide exchange factor	2e-36
d1gh8a_	89	d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacteriu	4e-31

>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  120 bits (302), Expect = 1e-37
 Identities = 45/81 (55%), Positives = 62/81 (76%)

Query: 21  IAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDD 80
            AKS + LDVKPW D+T+++EM   V+AI+M+GL WGA +  P+ +GI KLQI+CVVEDD
Sbjct: 2   AAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDD 61

Query: 81  LVSVDALQESIQDIEDYVSLV 101
            VS+D LQ+SI++ ED+V   
Sbjct: 62  KVSLDDLQQSIEEDEDHVQST 82

>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 2e-36
 Identities = 51/82 (62%), Positives = 64/82 (78%)

Query: 20  LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVED 79
           L+AKS+I+LDVKPW D+TDM ++E+ VR+IQ DGL+WG+SKL P+ YGI KLQI CVVED
Sbjct: 2   LVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVED 61

Query: 80  DLVSVDALQESIQDIEDYVSLV 101
           D V  D L+E I   EDYV  +
Sbjct: 62  DKVGTDMLEEQITAFEDYVQSM 83

>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: aEF-1beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  103 bits (259), Expect = 4e-31
 Identities = 18/75 (24%), Positives = 34/75 (45%)

Query: 22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDL 81
                + V P   D D++ ++K+++    +G         P+A+G+  L +  VV D  
Sbjct: 2  GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAE 61

Query: 82 VSVDALQESIQDIED 96
             +A +ES+  IE 
Sbjct: 62 GGTEAAEESLSGIEG 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1f60b_	90	Guanine nucleotide exchange factor (GEF) domain fr	100.0
d1b64a_	91	Guanine nucleotide exchange factor (GEF) domain fr	100.0
d1gh8a_	89	aEF-1beta {Archaeon Methanobacterium thermoautotro	100.0

>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-41  Score=225.96  Aligned_cols=88  Identities=51%  Similarity=0.856  Sum_probs=86.4

Q ss_pred             cceeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCce
Q psy2429          20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVS   99 (108)
Q Consensus        20 ~~aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~Vq   99 (108)
                      ++|||+++|+|||||+||||++|+++||+++++||.||+++++||||||++||++|+|+|++|++|+|+|.|+++||+||
T Consensus         1 p~aKs~vvl~VkP~d~e~Dl~~l~~~ik~i~~~gl~~g~~~~~PiafGlkkL~i~~vveDd~~~~D~lee~i~~~Ed~Vq   80 (90)
T d1f60b_           1 PAAKSIVTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQSIEEDEDHVQ   80 (90)
T ss_dssp             CCCEEEEEEEEEESSTTSCHHHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEETTTCCHHHHHHHHHTCTTTEE
T ss_pred             CcceEEEEEEEeeCCCCCCHHHHHHHHHHhCcCccEEeEEEEEEEeeeeeeEEEEEEEEeCCcCHHHHHHHHHhhcCcee
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeeC
Q psy2429         100 LVFLKCVP  107 (108)
Q Consensus       100 SvdI~~~~  107 (108)
                      ||||++|+
T Consensus        81 SvdI~~~~   88 (90)
T d1f60b_          81 STDIAAMQ   88 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999997

>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=224.34  Aligned_cols=89  Identities=57%  Similarity=0.971  Sum_probs=86.7

Q ss_pred             cceeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCce
Q psy2429          20 LIAKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVS   99 (108)
Q Consensus        20 ~~aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~Vq   99 (108)
                      .+|||+++|+|||||+||||++|+++||+++++||.||+++++|||||||+||++|+|+|++||+|+|+|.|+++||+||
T Consensus         2 ~vaKs~vvl~VkP~d~e~Dl~~l~~~vk~i~~~gl~wg~~k~~PIaFGlkkL~i~~vveDd~~~~D~lee~i~~~Ed~Vq   81 (91)
T d1b64a_           2 LVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ   81 (91)
T ss_dssp             CSSCEEEEEEEEESSTTSCHHHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHHHTTCTTTEE
T ss_pred             EEEEEEEEEEEeeCCCCCCHHHHHHHHHHhccccCcEeeEEEEEEEeeeeeEEEEEEEEeCCcChHHHHHHHHhhcCcee
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             eEEeeeeCC
Q psy2429         100 LVFLKCVPN  108 (108)
Q Consensus       100 SvdI~~~~~  108 (108)
                      ||||++|+.
T Consensus        82 svdI~s~nk   90 (91)
T d1b64a_          82 SMDVAAFNK   90 (91)
T ss_dssp             EEEESCCBC
T ss_pred             EEEEEEeec
Confidence            999999973

>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: aEF-1beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=1.1e-36  Score=204.87  Aligned_cols=85  Identities=25%  Similarity=0.317  Sum_probs=83.1

Q ss_pred             eeeeEEEEEeeCCCccCHHHHHHHHHhhhcCCeeEeeeEeeeeeeeeeeEEEEEEEeCCCcChhHHHHHHHhcCCCceeE
Q psy2429          22 AKSNIILDVKPWGDDTDMKEMEKQVRAIQMDGLLWGASKLAPLAYGINKLQISCVVEDDLVSVDALQESIQDIEDYVSLV  101 (108)
Q Consensus        22 aKs~vvl~VkP~d~etDl~~L~~~Ir~i~~eGl~wg~~k~~PIaFGlkkLqi~~vveDd~~~~d~lee~i~~~ed~VqSv  101 (108)
                      ||++++|+|||||+||||++|+++||+++++|+.|++++++|||||||+||++|+|+|++|+||+||++|+++| +||||
T Consensus         2 ~~v~v~~kV~P~~~e~dl~~l~~~ik~~~~~g~~~~~~~~~PiaFGLk~L~v~~vv~D~~g~~D~lee~i~~ie-~Vqsv   80 (89)
T d1gh8a_           2 GDVVATIKVMPESPDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEESLSGIE-GVSNI   80 (89)
T ss_dssp             CCEEEEEEEEESSSCCCHHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHHHTTSC-SSEEE
T ss_pred             ceEEEEEEECCCCCCCCHHHHHHHHHhhccCCcEEEEEEEEEEEcceEeEEEEEEEEcCCcChHHHHHHHhccC-CCcEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999997 69999


Q ss_pred             EeeeeC
Q psy2429         102 FLKCVP  107 (108)
Q Consensus       102 dI~~~~  107 (108)
                      ||++|+
T Consensus        81 ev~~~~   86 (89)
T d1gh8a_          81 EVTDVR   86 (89)
T ss_dssp             EEEEEE
T ss_pred             EeEEee
Confidence            999996