Psyllid ID: psy2460

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLKRSSEPLLNLQNEAKLFQ
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHcccccHccEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHEEcccccHHcHHHHHHHcc
Coil and Loop (DISEMBL)
mkflasmpelcdvtflvgdtrePVCAVKAVLAARSRVFHKMlysapspqrkkdpppkenkLRLFLKrssepllnlqnEAKLFQ
Flexible Loop (DISEMBL)
mkflasmpelcDVTFLVGDTREPVCAVKAVLAARSRVFHKMlysapspqrkkdpppkENKLRLflkrssepllnlqneaklfq
Low Complexity Region (SEG)
MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLKRSSEPLLNLQNEAKLFQ
Disordered region (IsUnstruct)
******MPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLY****************************************
Disordered Region (DISOPRED)
****ASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHK*******************************************
Disordered Region (DISEMBL)
MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS*************ENKLRLFLKRSSEPLLNLQNEAKLFQ
Disordered Region (DISPRO)
*KFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPS**********ENKLRLFLKRSSEPLLNLQNEAKLFQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLKRSSEPLLNLQNEAKLFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
O61366	1302	Serine-enriched protein O	yes	N/A	0.963	0.061	0.875	3e-34

>sp|O61366|GPRS_DROME Serine-enriched protein OS=Drosophila melanogaster GN=gprs PE=4 SV=3

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 75/80 (93%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVGDTREPVCAVKAVLA+RSRVF KMLY+APSPQRK++   KENK
Sbjct: 30  MKFLASMPELCDVTFLVGDTREPVCAVKAVLASRSRVFAKMLYAAPSPQRKRETSTKENK 89

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           LRLFLKRSSEPLLNLQN A+
Sbjct: 90  LRLFLKRSSEPLLNLQNAAQ 109

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
383857911	650	PREDICTED: uncharacterized protein LOC10	0.963	0.123	0.912	1e-36
189240581	172	PREDICTED: similar to AGAP012255-PA [Tri	0.963	0.465	0.925	4e-36
307203929	509	Serine-enriched protein [Harpegnathos sa	0.963	0.157	0.912	9e-36
312383484	1503	hypothetical protein AND_03392 [Anophele	1.0	0.055	0.891	9e-36
242019531	732	conserved hypothetical protein [Pediculu	0.963	0.109	0.925	1e-35
158300336	1230	AGAP012255-PA [Anopheles gambiae str. PE	0.963	0.065	0.912	1e-35
170038565	1244	serine-enriched protein [Culex quinquefa	0.963	0.064	0.912	2e-35
157114754	1195	hypothetical protein AaeL_AAEL001149 [Ae	0.963	0.066	0.912	2e-35
340723877	778	PREDICTED: hypothetical protein LOC10064	0.963	0.102	0.875	3e-35
350426565	771	PREDICTED: hypothetical protein LOC10074	0.963	0.103	0.875	3e-35

>gi|383857911|ref|XP_003704447.1| PREDICTED: uncharacterized protein LOC100880719 [Megachile rotundata]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/80 (91%), Positives = 78/80 (97%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVGDTREPVCAV+AVLAARSRVF+KMLY APSPQRKKDPPP+ENK
Sbjct: 28  MKFLASMPELCDVTFLVGDTREPVCAVRAVLAARSRVFYKMLYQAPSPQRKKDPPPRENK 87

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           +RLFLKRSSEPLLNLQN A+
Sbjct: 88  IRLFLKRSSEPLLNLQNAAQ 107

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240581|ref|XP_001816007.1| PREDICTED: similar to AGAP012255-PA [Tribolium castaneum]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/80 (92%), Positives = 78/80 (97%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLY APSPQRKK+PPP+ENK
Sbjct: 34  MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYQAPSPQRKKEPPPRENK 93

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           LRLFLKRSSEPLLNLQN ++
Sbjct: 94  LRLFLKRSSEPLLNLQNASQ 113

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203929|gb|EFN82836.1| Serine-enriched protein [Harpegnathos saltator]

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/80 (91%), Positives = 77/80 (96%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLY APSPQRKK+PP +ENK
Sbjct: 74  MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYQAPSPQRKKEPPARENK 133

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           +RLFLKRSSEPLLNLQN A+
Sbjct: 134 IRLFLKRSSEPLLNLQNAAQ 153

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383484|gb|EFR28554.1| hypothetical protein AND_03392 [Anopheles darlingi]

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 78/83 (93%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVG+TREPVCAVKAVLAARSRVF KMLY APSPQRKK+PPP+ENK
Sbjct: 30  MKFLASMPELCDVTFLVGETREPVCAVKAVLAARSRVFQKMLYQAPSPQRKKEPPPRENK 89

Query: 61  LRLFLKRSSEPLLNLQNEAKLFQ 83
           LRLFLKRSSEPLLNLQN A+  Q
Sbjct: 90  LRLFLKRSSEPLLNLQNAAQQCQ 112

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019531|ref|XP_002430214.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515310|gb|EEB17476.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/80 (92%), Positives = 76/80 (95%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLY APSPQRKK+P  KENK
Sbjct: 29  MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYQAPSPQRKKEPVQKENK 88

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           LRLFLKRSSEPLLNLQN A+
Sbjct: 89  LRLFLKRSSEPLLNLQNAAQ 108

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300336|ref|XP_320284.4| AGAP012255-PA [Anopheles gambiae str. PEST] gi|157013110|gb|EAA00303.5| AGAP012255-PA [Anopheles gambiae str. PEST]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/80 (91%), Positives = 77/80 (96%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVG+TREPVCAVKAVLAARSRVF KMLY APSPQRKK+PPP+ENK
Sbjct: 30  MKFLASMPELCDVTFLVGETREPVCAVKAVLAARSRVFQKMLYQAPSPQRKKEPPPRENK 89

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           LRLFLKRSSEPLLNLQN A+
Sbjct: 90  LRLFLKRSSEPLLNLQNAAQ 109

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038565|ref|XP_001847119.1| serine-enriched protein [Culex quinquefasciatus] gi|167882318|gb|EDS45701.1| serine-enriched protein [Culex quinquefasciatus]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/80 (91%), Positives = 77/80 (96%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVG+TREPVCAVKAVLAARSRVF KMLY APSPQRKK+PPP+ENK
Sbjct: 30  MKFLASMPELCDVTFLVGETREPVCAVKAVLAARSRVFQKMLYQAPSPQRKKEPPPRENK 89

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           LRLFLKRSSEPLLNLQN A+
Sbjct: 90  LRLFLKRSSEPLLNLQNAAQ 109

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114754|ref|XP_001652405.1| hypothetical protein AaeL_AAEL001149 [Aedes aegypti] gi|108883558|gb|EAT47783.1| AAEL001149-PA [Aedes aegypti]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/80 (91%), Positives = 77/80 (96%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVG+TREPVCAVKAVLAARSRVF KMLY APSPQRKK+PPP+ENK
Sbjct: 21  MKFLASMPELCDVTFLVGETREPVCAVKAVLAARSRVFQKMLYQAPSPQRKKEPPPRENK 80

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           LRLFLKRSSEPLLNLQN A+
Sbjct: 81  LRLFLKRSSEPLLNLQNAAQ 100

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723877|ref|XP_003400313.1| PREDICTED: hypothetical protein LOC100649708 [Bombus terrestris]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 76/80 (95%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVG+T+EP+CAVKAVLAARSRVF KM Y APSPQRKK+PPPKENK
Sbjct: 42  MKFLASMPELCDVTFLVGETKEPICAVKAVLAARSRVFQKMFYQAPSPQRKKEPPPKENK 101

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           +RLFLKRSSEPLLNLQN A+
Sbjct: 102 IRLFLKRSSEPLLNLQNAAQ 121

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426565|ref|XP_003494476.1| PREDICTED: hypothetical protein LOC100744712 [Bombus impatiens]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 76/80 (95%)

Query: 1   MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
           MKFLASMPELCDVTFLVG+T+EP+CAVKAVLAARSRVF KM Y APSPQRKK+PPPKENK
Sbjct: 46  MKFLASMPELCDVTFLVGETKEPICAVKAVLAARSRVFQKMFYQAPSPQRKKEPPPKENK 105

Query: 61  LRLFLKRSSEPLLNLQNEAK 80
           +RLFLKRSSEPLLNLQN A+
Sbjct: 106 IRLFLKRSSEPLLNLQNAAQ 125

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
FB|FBgn0024232	1302	gprs "gprs" [Drosophila melano	0.963	0.061	0.875	7.1e-31
MGI|MGI:3644133	420	Zbtb42 "zinc finger and BTB do	0.469	0.092	0.512	0.00064

FB|FBgn0024232 gprs "gprs" [Drosophila melanogaster (taxid:7227)]

 Score = 353 (129.3 bits), Expect = 7.1e-31, P = 7.1e-31
 Identities = 70/80 (87%), Positives = 75/80 (93%)

Query:     1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENK 60
             MKFLASMPELCDVTFLVGDTREPVCAVKAVLA+RSRVF KMLY+APSPQRK++   KENK
Sbjct:    30 MKFLASMPELCDVTFLVGDTREPVCAVKAVLASRSRVFAKMLYAAPSPQRKRETSTKENK 89

Query:    61 LRLFLKRSSEPLLNLQNEAK 80
             LRLFLKRSSEPLLNLQN A+
Sbjct:    90 LRLFLKRSSEPLLNLQNAAQ 109

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:3644133 Zbtb42 "zinc finger and BTB domain containing 42" [Mus musculus (taxid:10090)]

 Score = 80 (33.2 bits), Expect = 0.00064, Sum P(2) = 0.00064
 Identities = 21/41 (51%), Positives = 23/41 (56%)

Query:    10 LCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQR 50
             LCD T LVGD R P  A +AVLAA S  FH      P+  R
Sbjct:    23 LCDCTVLVGDARFP--AHRAVLAACSVYFHLFYRDQPASSR 61

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O61366	GPRS_DROME	No assigned EC number	0.875	0.9638	0.0614	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	83
pfam00651	101	pfam00651, BTB, BTB/POZ domain	4e-07
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	6e-05

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 43.4 bits (103), Expect = 4e-07
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
          ELCDVT +VGD        KAVLAA S  F  +   
Sbjct: 9  ELCDVTLVVGDKEFHAH--KAVLAACSPYFKALFTG 42

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 37.7 bits (88), Expect = 6e-05
 Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 17/85 (20%)

Query: 12 DVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRK-----KDPPPKENKLRLFLK 66
          DVT +VG  +      KAVLAA S  F  +  S      K      D  P++   R  L 
Sbjct: 1  DVTLVVGGKKFHAH--KAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPED--FRALLN 56

Query: 67 --------RSSEPLLNLQNEAKLFQ 83
                     E +  L   A   Q
Sbjct: 57 FLYTGKLDLPEENVEELLELADYLQ 81

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
KOG4441|consensus	571		99.82
PHA02713	557	hypothetical protein; Provisional	99.8
PHA02790	480	Kelch-like protein; Provisional	99.75
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.68
PHA03098	534	kelch-like protein; Provisional	99.67
KOG4350|consensus	620		99.53
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.46
KOG2075|consensus	521		99.21
KOG4591|consensus	280		98.67
KOG0783|consensus	1267		98.21
KOG4682|consensus	488		97.76
KOG2838|consensus	401		97.41
KOG2838|consensus	401		97.14
KOG0783|consensus	1267		97.13
KOG1987|consensus	297		93.53
KOG0511|consensus	516		89.52
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	86.17
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	84.15
KOG0511|consensus	516		81.82
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	80.54

>KOG4441|consensus

Probab=99.82  E-value=1.1e-20  Score=148.79  Aligned_cols=80  Identities=28%  Similarity=0.291  Sum_probs=75.4

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      ||.||+.+.+|||++.+++  ++|+|||+||||+||||++||++++.|+.++++.+.+|+++++-.     |++++.|++
T Consensus        27 l~~lr~~~~lcDv~L~v~~--~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~  104 (571)
T KOG4441|consen   27 LNELREEGLLCDVTLLVGD--REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISE  104 (571)
T ss_pred             HHHHHHhCCCceEEEEECC--eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEech
Confidence            6889999999999999999  999999999999999999999999999999999999999887421     999999999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|||+|+
T Consensus       105 ~nVq~ll  111 (571)
T KOG4441|consen  105 DNVQELL  111 (571)
T ss_pred             HhHHHHH
Confidence            9999986

>PHA02713 hypothetical protein; Provisional

Probab=99.80  E-value=5e-20  Score=144.16  Aligned_cols=77  Identities=21%  Similarity=0.235  Sum_probs=68.8

Q ss_pred             ChhhhcCCCCccEEEEeC-CcceeEehhHHHHhhhcHHHHHHhcCCCCCCC-CCCCCCCCCCHHHH------hhcCCccc
Q psy2460           1 MKFLASMPELCDVTFLVG-DTREPVCAVKAVLAARSRVFHKMLYSAPSPQR-KKDPPPKENKLRLF------LKRSSEPL   72 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~-~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~-~~~v~i~dv~~~~f------~~~~~~~~   72 (83)
                      |+.||+++.+|||++.|+ +  ++|+|||+||||+|+||++||+++|.|.. +++|.|+++++++|      + |++.  
T Consensus        16 l~~lr~~~~l~DV~L~v~~~--~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~-Yt~~--   90 (557)
T PHA02713         16 ISNLLDDDILCDVIITIGDG--EEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYL-YNRH--   90 (557)
T ss_pred             HHHHHhCCCCCCEEEEeCCC--CEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHh-cCCC--
Confidence            578999999999999997 7  89999999999999999999999999864 78899999998874      4 5554  


Q ss_pred             ccccchhhhh
Q psy2460          73 LNLQNEAKLF   82 (83)
Q Consensus        73 l~~~~~~~~~   82 (83)
                      |+.+|+++|+
T Consensus        91 i~~~nv~~ll  100 (557)
T PHA02713         91 ISSMNVIDVL  100 (557)
T ss_pred             CCHHHHHHHH
Confidence            7999999986

>PHA02790 Kelch-like protein; Provisional

Probab=99.75  E-value=4.5e-19  Score=136.33  Aligned_cols=77  Identities=10%  Similarity=0.134  Sum_probs=65.5

Q ss_pred             hhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCC--CCCCHHHHh---h--cCCcccccc
Q psy2460           3 FLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPP--KENKLRLFL---K--RSSEPLLNL   75 (83)
Q Consensus         3 ~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i--~dv~~~~f~---~--~~~~~~l~~   75 (83)
                      .|+.++++|||++.+|+   +|+|||+||||+|||||+||.++|.|+.+ .+.+  .+++++++-   .  ||+++.|+.
T Consensus        15 ~~~~~~~~~~~~~~~~~---~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~   90 (480)
T PHA02790         15 ALSMTKKFKTIIEAIGG---NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS   90 (480)
T ss_pred             HHHhhhhhceEEEEcCc---EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec
Confidence            47789999999888776   89999999999999999999999999854 4544  489887642   1  999999999


Q ss_pred             cchhhhhC
Q psy2460          76 QNEAKLFQ   83 (83)
Q Consensus        76 ~~~~~~~~   83 (83)
                      +|||+|++
T Consensus        91 ~nV~~ll~   98 (480)
T PHA02790         91 HNVVNLLR   98 (480)
T ss_pred             ccHHHHHH
Confidence            99999873

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.68  E-value=2.6e-17  Score=102.31  Aligned_cols=80  Identities=24%  Similarity=0.249  Sum_probs=64.7

Q ss_pred             ChhhhcCCCCccEEEEeC-CcceeEehhHHHHhhhcHHHHHHhcCC-CCCCCCCCCCCCCCCHHHHhh-----cCCcccc
Q psy2460           1 MKFLASMPELCDVTFLVG-DTREPVCAVKAVLAARSRVFHKMLYSA-PSPQRKKDPPPKENKLRLFLK-----RSSEPLL   73 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~-~~~~~~~aHk~iLaa~S~~F~~mf~~~-~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l   73 (83)
                      |+++++++.+||++|.++ +  ++|+|||.||+++|+||++||.+. +.+....++.++++++++|..     |+.+..+
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~--~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~   78 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDG--KTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEI   78 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTT--EEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEE
T ss_pred             ChHHHcCCCCCCEEEEECCC--EEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccC
Confidence            578999999999999999 7  999999999999999999999987 455555678889999887532     8888888


Q ss_pred             c-ccchhhhh
Q psy2460          74 N-LQNEAKLF   82 (83)
Q Consensus        74 ~-~~~~~~~~   82 (83)
                      + .+++.+++
T Consensus        79 ~~~~~~~~ll   88 (111)
T PF00651_consen   79 NSDENVEELL   88 (111)
T ss_dssp             E-TTTHHHHH
T ss_pred             CHHHHHHHHH
Confidence            7 77777664

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA03098 kelch-like protein; Provisional

Probab=99.67  E-value=8.4e-17  Score=123.58  Aligned_cols=73  Identities=15%  Similarity=0.271  Sum_probs=64.3

Q ss_pred             hhhcCCCCccEEEEe--CCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           3 FLASMPELCDVTFLV--GDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         3 ~l~~~~~~~Dv~~~v--~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      .+. ++.+|||++.+  +|  ++|+|||+|||++|+||++||.++|.   +.+|.+++ ++++|-.     |++++.|+.
T Consensus         3 ~~~-~~~~~Dv~l~~~~~~--~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~   75 (534)
T PHA03098          3 SFE-LQKFCDESIIIVNGG--GIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITS   75 (534)
T ss_pred             ccc-cCCCCCEEEEEEcCC--EEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcH
Confidence            444 88999999998  77  99999999999999999999999988   56788888 8887531     899999999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+++|+
T Consensus        76 ~~~~~ll   82 (534)
T PHA03098         76 NNVKDIL   82 (534)
T ss_pred             HHHHHHH
Confidence            9999886

>KOG4350|consensus

Probab=99.53  E-value=7.3e-15  Score=113.68  Aligned_cols=75  Identities=28%  Similarity=0.333  Sum_probs=65.3

Q ss_pred             hhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHh---h--cCCccccccc
Q psy2460           2 KFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFL---K--RSSEPLLNLQ   76 (83)
Q Consensus         2 ~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~---~--~~~~~~l~~~   76 (83)
                      ..|+-+.+++||+|+|++  .+|+|||+|||+||.|||+|+.++|.|+.+..+++++-..++|-   .  |+++..|+..
T Consensus        36 ~~l~~~e~y~DVtfvve~--~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~  113 (620)
T KOG4350|consen   36 DELFTSEDYSDVTFVVED--TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGV  113 (620)
T ss_pred             HHHhhcCcccceEEEEec--cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccc
Confidence            356778899999999999  99999999999999999999999999999999999888888872   2  7888777544


Q ss_pred             ch
Q psy2460          77 NE   78 (83)
Q Consensus        77 ~~   78 (83)
                      ..
T Consensus       114 ~e  115 (620)
T KOG4350|consen  114 EE  115 (620)
T ss_pred             hH
Confidence            33

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.46  E-value=2.1e-13  Score=79.89  Aligned_cols=69  Identities=28%  Similarity=0.249  Sum_probs=58.9

Q ss_pred             cEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccccchhhhh
Q psy2460          12 DVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNLQNEAKLF   82 (83)
Q Consensus        12 Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~~~~~~~~   82 (83)
                      |+++.+|+  +.+++||.+|+++|+||++||.+++.+.....+.++|+++++|..     |+.++.++..++.+++
T Consensus         1 dv~i~v~~--~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~   74 (90)
T smart00225        1 DVTLVVGG--KKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELL   74 (90)
T ss_pred             CeEEEECC--EEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHH
Confidence            78999999  999999999999999999999988887777888889999998742     8888888777766553

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG2075|consensus

Probab=99.21  E-value=1.5e-11  Score=96.00  Aligned_cols=79  Identities=28%  Similarity=0.297  Sum_probs=68.8

Q ss_pred             hhhcCCCCccEEEEeCCc---ceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCccccc
Q psy2460           3 FLASMPELCDVTFLVGDT---REPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLN   74 (83)
Q Consensus         3 ~l~~~~~~~Dv~~~v~~~---~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~   74 (83)
                      .|++++..+|+.|+||+.   .+.+||||.|||..|.+|.+||.+++.+....++.+|||+|.+|+.     |+.++.+.
T Consensus       107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~  186 (521)
T KOG2075|consen  107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA  186 (521)
T ss_pred             hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh
Confidence            477899999999999852   4799999999999999999999999999978899999999998754     88888887


Q ss_pred             ccchhhh
Q psy2460          75 LQNEAKL   81 (83)
Q Consensus        75 ~~~~~~~   81 (83)
                      -+|+=.+
T Consensus       187 ~dtvi~t  193 (521)
T KOG2075|consen  187 ADTVITT  193 (521)
T ss_pred             HHHHHHH
Confidence            7776444

>KOG4591|consensus

Probab=98.67  E-value=2.6e-08  Score=71.83  Aligned_cols=72  Identities=18%  Similarity=0.226  Sum_probs=54.6

Q ss_pred             hhhcCCCCccEEEEeCCc-ceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCccccccc
Q psy2460           3 FLASMPELCDVTFLVGDT-REPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNLQ   76 (83)
Q Consensus         3 ~l~~~~~~~Dv~~~v~~~-~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~~   76 (83)
                      .|++.++++|++|+++|+ .+.++|||.||||||++..  |.++-.| ..++....|+++++|..     |+-++.+.++
T Consensus        59 dL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iRWIYTDEidfk~d  135 (280)
T KOG4591|consen   59 DLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIRWIYTDEIDFKED  135 (280)
T ss_pred             HHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhheeeeccccccccc
Confidence            477899999999999864 5899999999999999765  3333333 23456668999999843     7777777665


Q ss_pred             c
Q psy2460          77 N   77 (83)
Q Consensus        77 ~   77 (83)
                      .
T Consensus       136 D  136 (280)
T KOG4591|consen  136 D  136 (280)
T ss_pred             h
Confidence            4

>KOG0783|consensus

Probab=98.21  E-value=4.4e-07  Score=75.51  Aligned_cols=55  Identities=27%  Similarity=0.330  Sum_probs=43.8

Q ss_pred             CCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCC------------CCCCCCCCCCHHHH
Q psy2460           8 PELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQR------------KKDPPPKENKLRLF   64 (83)
Q Consensus         8 ~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~------------~~~v~i~dv~~~~f   64 (83)
                      ..+.||+|.||+  +.|+|||.||++||++||++|......+.            ...+.+.+|.|.+|
T Consensus       556 ds~hDVtf~vg~--~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mf  622 (1267)
T KOG0783|consen  556 DSFHDVTFYVGT--SMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMF  622 (1267)
T ss_pred             cccceEEEEecC--eecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHH
Confidence            346799999999  99999999999999999999987554432            23344567888876

>KOG4682|consensus

Probab=97.76  E-value=1.3e-05  Score=62.42  Aligned_cols=75  Identities=15%  Similarity=-0.031  Sum_probs=61.3

Q ss_pred             hhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCC----CCCCHHHHhh-----cCCccc
Q psy2460           2 KFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPP----KENKLRLFLK-----RSSEPL   72 (83)
Q Consensus         2 ~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i----~dv~~~~f~~-----~~~~~~   72 (83)
                      +.|+.+++-+||++.+=|  ++++-||.-|. .|+||.+||.|.++|+.++.|.+    |-|+..+|..     |.++++
T Consensus        61 q~lf~q~enSDv~l~alg--~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve  137 (488)
T KOG4682|consen   61 QNLFLQGENSDVILEALG--FEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE  137 (488)
T ss_pred             HHHHhcCCCcceehhhcc--ceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence            457789999999999989  99999998886 58999999999999998876654    3356665533     999999


Q ss_pred             ccccchh
Q psy2460          73 LNLQNEA   79 (83)
Q Consensus        73 l~~~~~~   79 (83)
                      |+++.+.
T Consensus       138 I~l~dv~  144 (488)
T KOG4682|consen  138 IKLSDVV  144 (488)
T ss_pred             ccHHHHH
Confidence            9887754

>KOG2838|consensus

Probab=97.41  E-value=0.00013  Score=54.91  Aligned_cols=72  Identities=24%  Similarity=0.207  Sum_probs=45.9

Q ss_pred             CCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCC--CCCC---HHHHhh--cCCccc---ccccc
Q psy2460           8 PELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPP--KENK---LRLFLK--RSSEPL---LNLQN   77 (83)
Q Consensus         8 ~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i--~dv~---~~~f~~--~~~~~~---l~~~~   77 (83)
                      +...|+-+....  ..|+|||++||+|||+|+.+..............+  -+++   .++|++  |+.+-.   +..||
T Consensus       128 k~c~dldiiFke--TcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn  205 (401)
T KOG2838|consen  128 KVCGDLDIIFKE--TCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQN  205 (401)
T ss_pred             eeeccceeeeee--ccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCch
Confidence            334588888888  89999999999999999999876543322222222  2233   345665  555544   45566


Q ss_pred             hhhh
Q psy2460          78 EAKL   81 (83)
Q Consensus        78 ~~~~   81 (83)
                      ++=|
T Consensus       206 ~diL  209 (401)
T KOG2838|consen  206 SDIL  209 (401)
T ss_pred             HHHH
Confidence            5543

>KOG2838|consensus

Probab=97.14  E-value=0.00023  Score=53.66  Aligned_cols=55  Identities=31%  Similarity=0.304  Sum_probs=36.3

Q ss_pred             eeEehhHHHHhhhcHHHHHHhcCCCCCC---------CCCCCCCCC-CCHH----HHhh--cCCccccccc
Q psy2460          22 EPVCAVKAVLAARSRVFHKMLYSAPSPQ---------RKKDPPPKE-NKLR----LFLK--RSSEPLLNLQ   76 (83)
Q Consensus        22 ~~~~aHk~iLaa~S~~F~~mf~~~~~e~---------~~~~v~i~d-v~~~----~f~~--~~~~~~l~~~   76 (83)
                      .++.|||+|.|+||++||.++....++.         +.+++++.+ |-|.    +|++  |+-++.+++.
T Consensus       261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~  331 (401)
T KOG2838|consen  261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLA  331 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhc
Confidence            5899999999999999999996543332         234444433 2333    4555  7766666544

>KOG0783|consensus

Probab=97.13  E-value=8e-05  Score=62.49  Aligned_cols=42  Identities=21%  Similarity=0.165  Sum_probs=33.4

Q ss_pred             CCCccEEEEe-CCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCC
Q psy2460           8 PELCDVTFLV-GDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRK   51 (83)
Q Consensus         8 ~~~~Dv~~~v-~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~   51 (83)
                      ++.-|+.+.. +|  +.++||||+|+||++||..||..-+.|+..
T Consensus       708 ~e~~d~~i~~KDG--kvl~aHkc~L~aRlEYF~smf~~~w~E~sS  750 (1267)
T KOG0783|consen  708 EETMDTVIKLKDG--KVLKAHKCFLSARLEYFSSMFQFVWMESSS  750 (1267)
T ss_pred             ccceeEEEEecCC--cCcccceeEeeeHHHHHHHHHHHHHhhhcc
Confidence            3444555555 44  889999999999999999999988887664

>KOG1987|consensus

Probab=93.53  E-value=0.0092  Score=42.97  Aligned_cols=42  Identities=33%  Similarity=0.186  Sum_probs=35.1

Q ss_pred             eeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHH
Q psy2460          22 EPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRL   63 (83)
Q Consensus        22 ~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~   63 (83)
                      ..+.+|+++++++|++|++|+.....+...+.+.+.|..++.
T Consensus       110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~  151 (297)
T KOG1987|consen  110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEV  151 (297)
T ss_pred             cEEEcCceEEEeeecceeeecccccchhccccccccccchhh
Confidence            569999999999999999999988777766666777776554

>KOG0511|consensus

Probab=89.52  E-value=0.32  Score=38.39  Aligned_cols=30  Identities=17%  Similarity=0.079  Sum_probs=24.9

Q ss_pred             eeEehhHHHHhhhcHHHHHHhcCCCCCCCCC
Q psy2460          22 EPVCAVKAVLAARSRVFHKMLYSAPSPQRKK   52 (83)
Q Consensus        22 ~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~   52 (83)
                      ...|||++++. |+.||..||.|+..|+..+
T Consensus       301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n  330 (516)
T KOG0511|consen  301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVN  330 (516)
T ss_pred             ccccHHHHHHH-HHHHHHHHhccchhhhcCC
Confidence            45999999986 5789999999999986533

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=86.17  E-value=0.21  Score=30.27  Aligned_cols=50  Identities=12%  Similarity=0.139  Sum_probs=36.6

Q ss_pred             EEEEeCCcceeEehhHHHHh-hhcHHHHHHhcCC---CCCCCCCCCCCCCCCHHHHh
Q psy2460          13 VTFLVGDTREPVCAVKAVLA-ARSRVFHKMLYSA---PSPQRKKDPPPKENKLRLFL   65 (83)
Q Consensus        13 v~~~v~~~~~~~~aHk~iLa-a~S~~F~~mf~~~---~~e~~~~~v~i~dv~~~~f~   65 (83)
                      |+|-|||  +.|..-+..|. ....+|.+|+.+.   ......+.+-| |=+|+.|-
T Consensus         1 V~lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~   54 (94)
T PF02214_consen    1 VRLNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFE   54 (94)
T ss_dssp             EEEEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHH
T ss_pred             CEEEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhh
Confidence            6789999  99999999998 6677999999864   22234445554 77888874

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=84.15  E-value=2.3  Score=24.18  Aligned_cols=48  Identities=13%  Similarity=0.178  Sum_probs=32.1

Q ss_pred             EEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHH
Q psy2460          13 VTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLF   64 (83)
Q Consensus        13 v~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f   64 (83)
                      |+++.. +|+.|.+.+.++. .|..++.|+.+...+..  .+++++|+.+++
T Consensus         3 v~L~Ss-Dg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L   50 (62)
T PF03931_consen    3 VKLVSS-DGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRIL   50 (62)
T ss_dssp             EEEEET-TSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHH
T ss_pred             EEEEcC-CCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHH
Confidence            444442 2489999886654 89999999975333222  677889987765

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG0511|consensus

Probab=81.82  E-value=0.7  Score=36.54  Aligned_cols=29  Identities=31%  Similarity=0.296  Sum_probs=19.9

Q ss_pred             cEEEEe-CCcceeEehhHHHHhhhcHHHHHHh
Q psy2460          12 DVTFLV-GDTREPVCAVKAVLAARSRVFHKML   42 (83)
Q Consensus        12 Dv~~~v-~~~~~~~~aHk~iLaa~S~~F~~mf   42 (83)
                      |++|.. .|  +-|-|||..|++||.+|..-+
T Consensus       151 di~f~~q~g--~~f~ahkfll~arSs~~~~k~  180 (516)
T KOG0511|consen  151 DIDFLQQEG--ANFDAHKFLLEARSSNYFPKD  180 (516)
T ss_pred             chHHHhhcc--ccccHHHHHHHhhhcccCchh
Confidence            777665 44  677788888888777765444

>smart00512 Skp1 Found in Skp1 protein family

Probab=80.54  E-value=8.5  Score=23.74  Aligned_cols=43  Identities=12%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             ceeEehhHHHHhhhcHHHHHHhcCCCCCC-CCCCCCCCCCCHHHH
Q psy2460          21 REPVCAVKAVLAARSRVFHKMLYSAPSPQ-RKKDPPPKENKLRLF   64 (83)
Q Consensus        21 ~~~~~aHk~iLaa~S~~F~~mf~~~~~e~-~~~~v~i~dv~~~~f   64 (83)
                      |.+|.+.+.+. ..|..++.|+.+..... ....+++++|+..++
T Consensus        11 g~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L   54 (104)
T smart00512       11 GEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKIL   54 (104)
T ss_pred             CCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHH
Confidence            48999999866 68999999997633222 225788899987654

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-08
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	5e-08
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	5e-07
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	8e-07
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	2e-05
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	2e-05
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	5e-05
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	6e-05
2vpk_A	116	Myoneurin; transcription regulation, transcription	7e-05
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	8e-05
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	9e-05
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	1e-04
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	1e-04
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	1e-04
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	2e-04
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	3e-04
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	3e-04
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	4e-04
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	8e-04

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 46.8 bits (112), Expect = 2e-08
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
             D    V    +   A KA+LAARS VF  M   
Sbjct: 24 RFTDCCLCVAG--QEFQAHKAILAARSPVFSAMFEH 57

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 45.3 bits (108), Expect = 5e-08
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 9  ELCDVTFLVGDTRE--PVCAVKAVLAARSRVFHKMLYS 44
           + DV F+VG       V A K VLA  S VF+ M Y 
Sbjct: 7  LMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYG 44

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 43.8 bits (104), Expect = 5e-07
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
             D    V    +   A KA+LAARS VF  M   
Sbjct: 33 RFTDCCLCVAG--QEFQAHKAILAARSPVFSAMFEH 66

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 43.7 bits (103), Expect = 8e-07
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 9   ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSA 45
              D    V    +   A KA+LAARS VF  M    
Sbjct: 173 RFTDCCLCVAG--QEFQAHKAILAARSPVFSAMFEHE 207

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
           LCDV  +V        A + VLA  S++F  + + 
Sbjct: 27 TLCDVVIMVDSQEFH--AHRTVLACTSKMFEILFHR 60

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 38.4 bits (90), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
            CDVT +V D +    A K +L+A S  FH++   
Sbjct: 30 LFCDVTVIVEDRKFR--AHKNILSASSTYFHQLFSV 63

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 37.5 bits (88), Expect = 5e-05
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
           LCDV  LV     P    ++VLAA S+ F K+  S
Sbjct: 24 LLCDVVILVEGREFP--THRSVLAACSQYFKKLFTS 57

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 37.2 bits (87), Expect = 6e-05
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPS 47
           LCD TF+V        A KAVLAA S  F  +      
Sbjct: 26 LLCDCTFVVDGVHFK--AHKAVLAACSEYFKMLFVDQKD 62

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 37.2 bits (87), Expect = 7e-05
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRK 51
           LCD T ++G+ +    A + VLA+ S  F  +  S       
Sbjct: 21 FLCDCTIVIGEFQFK--AHRNVLASFSEYFGAIYRSTSENNVF 61

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 37.2 bits (87), Expect = 8e-05
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKK 52
           LCDVT +V        A +AVLAA S  F + L          
Sbjct: 31 ILCDVTLIVERKEFR--AHRAVLAACSEYFWQALVGQTKNDLVV 72

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 36.8 bits (86), Expect = 9e-05
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
           LCDVT  V   R    A ++VLAA S  FH  
Sbjct: 28 VLCDVTIFVEGQRFR--AHRSVLAACSSYFHSR 58

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
           L DV  +V   +    A K VL A S +F+ +
Sbjct: 28 ILTDVVIVVSREQFR--AHKTVLMACSGLFYSI 58

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
          + CD T  VG       A  +VLA  S  F  +
Sbjct: 23 QYCDATLDVGGLVFK--AHWSVLACCSHFFQSL 53

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
          + CD T  VG       A  +VLA  S  F ++
Sbjct: 24 QYCDATLDVGGLVFK--AHWSVLACCSHFFQRI 54

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
           LCDVT LV   R    A ++VLAA S  FH  
Sbjct: 35 VLCDVTVLVEGQRFR--AHRSVLAACSSYFHSR 65

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 35.7 bits (83), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
           LCD    VG    P  A   VLA  S+   + 
Sbjct: 29 ALCDTLITVGSQEFP--AHSLVLAGVSQQLGRR 59

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 35.7 bits (83), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
            CDV+ +V        A +AVLAA S  F  +
Sbjct: 32 LYCDVSVVVKGHAFK--AHRAVLAASSSYFRDL 62

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKML 42
            CD   ++     P    K +LAA S      L
Sbjct: 46 RFCDAHLVLDGEEIP--VQKNILAAASPYIRTKL 77

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 35.3 bits (82), Expect = 8e-04
 Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 2/33 (6%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
            CD   ++     P    K +LAA S      
Sbjct: 30 RFCDAHLVLDGEEIP--VQKNILAAASPYIRTK 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.86
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.85
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.85
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.84
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.84
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.84
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.83
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.82
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.82
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.82
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.81
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.81
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.81
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.8
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.8
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.8
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.79
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.77
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.76
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.7
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	98.74
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	98.6
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	97.11
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	96.9
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	96.72
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	96.25
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	93.55
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	90.77
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	88.63

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.86  E-value=1.9e-22  Score=127.51  Aligned_cols=80  Identities=19%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.+++++.+|||+|.++|  ++|+|||+|||++|+||++||.+++.|+....+.++++++++|..     |++.+.++.
T Consensus        16 l~~l~~~~~~~Dv~l~v~~--~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~   93 (120)
T 2if5_A           16 LNEQRTQGLLCDVVILVEG--REFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVST   93 (120)
T ss_dssp             HHHHHHTTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCG
T ss_pred             HHHHHhcCCCCCeEEEECC--EEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence            4678999999999999999  999999999999999999999999999988999999999998632     888888999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+.+++
T Consensus        94 ~~~~~ll  100 (120)
T 2if5_A           94 ANVGDIL  100 (120)
T ss_dssp             GGHHHHH
T ss_pred             HHHHHHH
Confidence            9988875

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.85  E-value=8.6e-22  Score=125.73  Aligned_cols=79  Identities=24%  Similarity=0.112  Sum_probs=71.3

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCC-CCCCHHHHhh-----cCCccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPP-KENKLRLFLK-----RSSEPLLN   74 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i-~dv~~~~f~~-----~~~~~~l~   74 (83)
                      |+.+++++.+|||+|.+++  ++|+|||+|||++|+||++||.+++.| ....+.+ +++++++|..     |++.+.++
T Consensus        20 l~~l~~~~~~~Dv~l~v~~--~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~   96 (127)
T 1r29_A           20 LNRLRSRDILTDVVIVVSR--EQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLR   96 (127)
T ss_dssp             HHHHHHTTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHhcCCCCCEEEEECC--EEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcC
Confidence            4678999999999999999  999999999999999999999999988 7788999 9999998632     88888899


Q ss_pred             ccchhhhh
Q psy2460          75 LQNEAKLF   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      .+|+.+|+
T Consensus        97 ~~~~~~ll  104 (127)
T 1r29_A           97 EGNIMAVM  104 (127)
T ss_dssp             TTTHHHHH
T ss_pred             HHHHHHHH
Confidence            99988875

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.85  E-value=1e-21  Score=128.92  Aligned_cols=80  Identities=16%  Similarity=0.180  Sum_probs=67.4

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCC--CCCCCCCCCCCCHHHHhh-----cCCcccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSP--QRKKDPPPKENKLRLFLK-----RSSEPLL   73 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e--~~~~~v~i~dv~~~~f~~-----~~~~~~l   73 (83)
                      |+.+++++.+|||+|.++|  ++|+|||+|||+||+||++||.+++.+  +....+.++|+++++|..     |++.+.+
T Consensus        38 l~~l~~~~~~~Dv~l~v~~--~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i  115 (144)
T 2ppi_A           38 LSSFREESRFCDAHLVLDG--EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRL  115 (144)
T ss_dssp             HHHTTC--CCCCEEEEETT--EEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHhcCCCcceEEEECC--EEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCC
Confidence            4678999999999999999  999999999999999999999988765  567788899999988632     8889999


Q ss_pred             cccchhhhh
Q psy2460          74 NLQNEAKLF   82 (83)
Q Consensus        74 ~~~~~~~~~   82 (83)
                      +.+|+.+|+
T Consensus       116 ~~~~v~~ll  124 (144)
T 2ppi_A          116 NEDTIQDVV  124 (144)
T ss_dssp             CTTTHHHHH
T ss_pred             CHHHHHHHH
Confidence            999998876

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.84  E-value=2e-21  Score=123.72  Aligned_cols=78  Identities=27%  Similarity=0.244  Sum_probs=69.3

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCC-CCHHHHhh-----cCCccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKE-NKLRLFLK-----RSSEPLLN   74 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~d-v~~~~f~~-----~~~~~~l~   74 (83)
                      |+.+++++.+|||+|.++|  ++|+|||+|||++|+||++||.+++.+  ...+.+++ +++++|..     |++.+.++
T Consensus        23 l~~l~~~~~~~Dv~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~   98 (125)
T 3ohu_A           23 LNDQRKKDILCDVTLIVER--KEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLS   98 (125)
T ss_dssp             HHHHHHHTCSCCEEEEETT--EEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHhcCCccceEEEECC--EEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEEC
Confidence            4688999999999999999  999999999999999999999998876  56788888 99987632     88999999


Q ss_pred             ccchhhhh
Q psy2460          75 LQNEAKLF   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      .+|+.+++
T Consensus        99 ~~~v~~ll  106 (125)
T 3ohu_A           99 RENIREVI  106 (125)
T ss_dssp             TTTHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.84  E-value=1.1e-21  Score=124.50  Aligned_cols=76  Identities=18%  Similarity=0.147  Sum_probs=67.6

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.+++++.+|||+|.+||  ++|+|||+|||++|+||++||.+++    ...+.++|+++++|..     |++...++.
T Consensus        15 l~~l~~~~~~~Dv~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~   88 (119)
T 3b84_A           15 LNKQREKGQYCDATLDVGG--LVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTS   88 (119)
T ss_dssp             HHHHHHHTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred             HHHHHhcCCCcceEEEECC--EEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence            4688999999999999999  9999999999999999999998876    5678889999987632     888889999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+++|+
T Consensus        89 ~~v~~ll   95 (119)
T 3b84_A           89 GNRDQVL   95 (119)
T ss_dssp             TTHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.84  E-value=2.3e-21  Score=120.36  Aligned_cols=79  Identities=27%  Similarity=0.252  Sum_probs=64.5

Q ss_pred             hhhcCCCCccEEEEeCCc--ceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           3 FLASMPELCDVTFLVGDT--REPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         3 ~l~~~~~~~Dv~~~v~~~--~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      +|++++.+|||+|.+++.  ++.|+|||+|||++|+||++||.+++.|+. ..+.++|+++++|..     |++...++.
T Consensus         1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~   79 (109)
T 2vkp_A            1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEA   79 (109)
T ss_dssp             CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCT
T ss_pred             CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCH
Confidence            478999999999999872  479999999999999999999999999888 889999999998632     888889999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+.+++
T Consensus        80 ~~~~~ll   86 (109)
T 2vkp_A           80 DTVLATL   86 (109)
T ss_dssp             TTHHHHH
T ss_pred             HHHHHHH
Confidence            9988875

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.83  E-value=5.7e-21  Score=120.24  Aligned_cols=76  Identities=22%  Similarity=0.210  Sum_probs=65.9

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCC--CCCHHHHhh-----cCCcccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPK--ENKLRLFLK-----RSSEPLL   73 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~--dv~~~~f~~-----~~~~~~l   73 (83)
                      |+.+++++.+|||+|.++|  ++|+|||+|||++|+||++||.++    ..+.+.++  |+++++|..     |++.+.+
T Consensus        13 l~~l~~~~~~~Dv~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~   86 (116)
T 2vpk_A           13 LNKQREAGFLCDCTIVIGE--FQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNL   86 (116)
T ss_dssp             HHHHHHHTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhcCCCCcEEEEECC--EEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCccc
Confidence            4688999999999999999  999999999999999999999876    24566666  999998632     8888889


Q ss_pred             cccchhhhh
Q psy2460          74 NLQNEAKLF   82 (83)
Q Consensus        74 ~~~~~~~~~   82 (83)
                      +.+|+.+++
T Consensus        87 ~~~~v~~ll   95 (116)
T 2vpk_A           87 DSWNVKEIH   95 (116)
T ss_dssp             CTTTHHHHH
T ss_pred             CHHHHHHHH
Confidence            999998875

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.82  E-value=3.3e-21  Score=124.98  Aligned_cols=76  Identities=18%  Similarity=0.156  Sum_probs=65.1

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.+|+++.+|||+|.|++  ++|+|||+|||++|+||++||.+++    ...+.++|+++++|..     |++++.++.
T Consensus        16 l~~l~~~~~~~Dv~l~v~~--~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~   89 (135)
T 2yy9_A           16 LNKQREKGQYCDATLDVGG--LVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTS   89 (135)
T ss_dssp             HHHHHHTTTTCCEEEEETT--EEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred             HHHHHhcCCCcceEEEECC--EEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCH
Confidence            4789999999999999999  9999999999999999999999876    5678889999887632     888899999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+.+|+
T Consensus        90 ~~v~~ll   96 (135)
T 2yy9_A           90 GNRDQVL   96 (135)
T ss_dssp             TTHHHHH
T ss_pred             HHHHHHH
Confidence            9998876

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.82  E-value=4.6e-21  Score=122.43  Aligned_cols=78  Identities=23%  Similarity=0.281  Sum_probs=65.5

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCC-CCCCHHHHhh-----cCCccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPP-KENKLRLFLK-----RSSEPLLN   74 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i-~dv~~~~f~~-----~~~~~~l~   74 (83)
                      |+.+++++.+|||+|.++|  ++|+|||+|||++|+||++||.+++.++  ..+.+ .++++++|..     |++.+.++
T Consensus        20 l~~l~~~~~~~Dv~l~v~~--~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~   95 (124)
T 2ihc_A           20 LNDQRKKDVLCDVTIFVEG--QRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILS   95 (124)
T ss_dssp             HHHHHHHTCSCCEEEEETT--EEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEE
T ss_pred             HHHHHhcCCCcCEEEEECC--EEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccC
Confidence            4688999999999999999  9999999999999999999999988764  45667 4899887632     88889999


Q ss_pred             ccchhhhh
Q psy2460          75 LQNEAKLF   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      .+|+.+++
T Consensus        96 ~~~v~~ll  103 (124)
T 2ihc_A           96 KENVDEVC  103 (124)
T ss_dssp             TTTHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.82  E-value=9e-21  Score=122.98  Aligned_cols=78  Identities=24%  Similarity=0.275  Sum_probs=67.5

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCC-CCCHHHHhh-----cCCccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPK-ENKLRLFLK-----RSSEPLLN   74 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~-dv~~~~f~~-----~~~~~~l~   74 (83)
                      |+.+++++.+|||+|.|+|  ++|+|||+|||+||+||++||.+++.+.  ..+.++ ++++++|..     |++++.++
T Consensus        27 l~~l~~~~~~~Dv~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~  102 (138)
T 2z8h_A           27 LNDQRKKDVLCDVTVLVEG--QRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILS  102 (138)
T ss_dssp             HHHHHHHTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHhhCCCcCeEEEECC--EEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccC
Confidence            4688999999999999999  9999999999999999999999888763  466774 899887522     88889999


Q ss_pred             ccchhhhh
Q psy2460          75 LQNEAKLF   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      .+|+.+|+
T Consensus       103 ~~~v~~ll  110 (138)
T 2z8h_A          103 KDNVDEVC  110 (138)
T ss_dssp             TTTHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.81  E-value=1e-20  Score=120.26  Aligned_cols=75  Identities=17%  Similarity=0.238  Sum_probs=66.0

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.+++++.+|||+|.++|  ++|+|||+|||++|+||++||.++     ...+.++|+++++|..     |++...++.
T Consensus        19 l~~l~~~~~~~Dv~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~   91 (121)
T 1buo_A           19 ANQMRLAGTLCDVVIMVDS--QEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKA   91 (121)
T ss_dssp             HHHHHHHTTTCCEEEEESS--CEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCG
T ss_pred             HHHHHhcCCCCCEEEEECC--EEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCH
Confidence            4688999999999999999  999999999999999999999764     4578889999998632     888888999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+.+++
T Consensus        92 ~~~~~ll   98 (121)
T 1buo_A           92 EDLDDLL   98 (121)
T ss_dssp             GGHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.81  E-value=1.7e-20  Score=119.07  Aligned_cols=75  Identities=24%  Similarity=0.249  Sum_probs=65.3

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcc-ccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEP-LLN   74 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~-~l~   74 (83)
                      |+.+++++.+|||+|.++|  +.|+|||+|||++|+||++||.++     ...+.++++++++|..     |++.+ .++
T Consensus        22 l~~~~~~~~~~Dv~l~v~~--~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~   94 (116)
T 3fkc_A           22 LNEQRGHGLFCDVTVIVED--RKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVR   94 (116)
T ss_dssp             HHHHHHHTTTCCEEEEETT--EEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCC
T ss_pred             HHHHHhcCCceeEEEEECC--EEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCC
Confidence            4678999999999999999  999999999999999999999875     4578889999997632     77777 799


Q ss_pred             ccchhhhh
Q psy2460          75 LQNEAKLF   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      .+|+++++
T Consensus        95 ~~~~~~ll  102 (116)
T 3fkc_A           95 SDLLDELI  102 (116)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988875

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.81  E-value=1.6e-20  Score=120.39  Aligned_cols=76  Identities=21%  Similarity=0.245  Sum_probs=67.2

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCC-CCCHHHHhh-----cCCccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPK-ENKLRLFLK-----RSSEPLLN   74 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~-dv~~~~f~~-----~~~~~~l~   74 (83)
                      |+.+++++.+|||+|.|+|  ++|+|||+|||++|+||++||.++    ....+.++ ++++++|-.     |++.+.++
T Consensus        24 l~~l~~~~~~~Dv~l~v~~--~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~   97 (129)
T 3ga1_A           24 LNEQRLQGLYCDVSVVVKG--HAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMN   97 (129)
T ss_dssp             HHHHHHTTCSCCEEEEETT--EEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECC
T ss_pred             HHHHHhcCCCcceEEEECC--EEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccC
Confidence            4678999999999999999  999999999999999999999876    56688886 899998632     88899999


Q ss_pred             ccchhhhh
Q psy2460          75 LQNEAKLF   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      .+|+.+|+
T Consensus        98 ~~~~~~ll  105 (129)
T 3ga1_A           98 VGDQDLLM  105 (129)
T ss_dssp             TTTHHHHH
T ss_pred             HHHHHHHH
Confidence            99988875

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.80  E-value=1.5e-20  Score=123.89  Aligned_cols=80  Identities=21%  Similarity=0.186  Sum_probs=72.0

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.+++++.+|||+|.++|  ++|+|||+||+++|+||++||.+++.++....+.++|+++++|..     |+..+.++.
T Consensus        25 l~~l~~~~~~~Dv~l~v~~--~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~  102 (172)
T 3htm_A           25 LGGLWENSRFTDCCLCVAG--QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD  102 (172)
T ss_dssp             HHHHHHHTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGG
T ss_pred             HHHHHhCCCCcceEEEECC--EEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcH
Confidence            4678999999999999999  999999999999999999999999999988999999999998632     777888888


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      .|+.+++
T Consensus       103 ~~~~~ll  109 (172)
T 3htm_A          103 KMADDLL  109 (172)
T ss_dssp             GTHHHHH
T ss_pred             HHHHHHH
Confidence            8888775

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.80  E-value=1.4e-20  Score=131.73  Aligned_cols=80  Identities=16%  Similarity=0.180  Sum_probs=61.9

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCC--CCCCCCCCCCCCCHHHHhh-----cCCcccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPS--PQRKKDPPPKENKLRLFLK-----RSSEPLL   73 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~--e~~~~~v~i~dv~~~~f~~-----~~~~~~l   73 (83)
                      |+.+++++.+|||+|.|||  ++|+|||+|||++|+||++||.+++.  ++....+.++++++++|..     |++.+.+
T Consensus        22 l~~l~~~~~~~Dv~l~v~~--~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i   99 (256)
T 3hve_A           22 LSSFREESRFCDAHLVLDG--EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRL   99 (256)
T ss_dssp             HHTCCC--CCCCEEEEETT--EEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhcCCCcceEEEECC--EEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcc
Confidence            4678999999999999999  99999999999999999999999887  5677889999999998632     8888999


Q ss_pred             cccchhhhh
Q psy2460          74 NLQNEAKLF   82 (83)
Q Consensus        74 ~~~~~~~~~   82 (83)
                      +.+|+.+++
T Consensus       100 ~~~~v~~ll  108 (256)
T 3hve_A          100 NEDTIQDVV  108 (256)
T ss_dssp             C-CCHHHHH
T ss_pred             cHhHHHHHH
Confidence            999998876

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.80  E-value=1.6e-20  Score=119.16  Aligned_cols=75  Identities=24%  Similarity=0.225  Sum_probs=65.6

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.+|+++.+|||+|.++|  ++|+|||+|||+||+||++||.++     ...+.++++++++|..     |++.+.++.
T Consensus        18 l~~l~~~~~~~Dv~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~   90 (119)
T 2q81_A           18 LNQQRQLGLLCDCTFVVDG--VHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFMYTAKLSLSP   90 (119)
T ss_dssp             HHHHHHHTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHHHHSCCCCCT
T ss_pred             HHHHHhcCCCcceEEEECC--EEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence            4788999999999999999  999999999999999999999862     4567888999887532     888899999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+.+++
T Consensus        91 ~~~~~ll   97 (119)
T 2q81_A           91 ENVDDVL   97 (119)
T ss_dssp             TTHHHHH
T ss_pred             HHHHHHH
Confidence            9998876

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.79  E-value=9.5e-21  Score=121.95  Aligned_cols=80  Identities=21%  Similarity=0.186  Sum_probs=71.3

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.+++++.+|||+|.++|  +.|+|||+||+++|+||++||.+++.++....+.++++++++|..     |++...++.
T Consensus        16 l~~l~~~~~~~Dv~l~v~~--~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~   93 (145)
T 4eoz_A           16 LGGLWENSRFTDCCLCVAG--QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD   93 (145)
T ss_dssp             HHHHHHHTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGG
T ss_pred             HHHHHhCCCCcceEEEECC--EEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcH
Confidence            4678999999999999999  999999999999999999999999888878899999999997632     777888888


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+.+++
T Consensus        94 ~~~~~ll  100 (145)
T 4eoz_A           94 KMADDLL  100 (145)
T ss_dssp             GTHHHHH
T ss_pred             HHHHHHH
Confidence            8888775

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.77  E-value=2.3e-20  Score=132.32  Aligned_cols=80  Identities=16%  Similarity=0.152  Sum_probs=64.3

Q ss_pred             ChhhhcCCCCccEEEEeC---CcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCC------CCCHHHHhh-----
Q psy2460           1 MKFLASMPELCDVTFLVG---DTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPK------ENKLRLFLK-----   66 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~---~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~------dv~~~~f~~-----   66 (83)
                      |+.+|+++.+|||+|.||   |  ++|+|||+|||++|+||++||.+++.|+....+.++      ++++++|..     
T Consensus        23 l~~l~~~~~~~Dv~l~v~~~~~--~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~  100 (279)
T 3i3n_A           23 QNEQRRQGLFCDITLCFGGAGG--REFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYM  100 (279)
T ss_dssp             HHHHHHHTTTCCEEEECC------CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEcCCCC--eEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhh
Confidence            478899999999999998   6  999999999999999999999999999998999998      889988632     


Q ss_pred             cCCcccccccchhhhh
Q psy2460          67 RSSEPLLNLQNEAKLF   82 (83)
Q Consensus        67 ~~~~~~l~~~~~~~~~   82 (83)
                      |++.+.++.+|+.+++
T Consensus       101 Ytg~~~i~~~~v~~ll  116 (279)
T 3i3n_A          101 YTGRIRVSTGSVHEVL  116 (279)
T ss_dssp             HHSEEEEETTTHHHHH
T ss_pred             CcCCcccCHHHHHHHH
Confidence            8889999999998875

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.76  E-value=3.5e-19  Score=127.48  Aligned_cols=80  Identities=21%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.|++++.+|||+|.|+|  ++|+|||+|||+|||||++||.+++.|+...++.++|+++++|..     |+..+.++.
T Consensus       165 l~~l~~~~~~~Dv~l~v~~--~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~  242 (312)
T 3hqi_A          165 LGGLWENSRFTDCCLCVAG--QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD  242 (312)
T ss_dssp             HHHHHHTTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHH
T ss_pred             HHHHHhCCCCCceEEEECC--EEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChH
Confidence            3568899999999999999  999999999999999999999999999999999999999998632     777776777


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      .++++|+
T Consensus       243 ~~~~~ll  249 (312)
T 3hqi_A          243 KMADDLL  249 (312)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777765

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.70  E-value=3.5e-18  Score=109.33  Aligned_cols=67  Identities=22%  Similarity=0.177  Sum_probs=59.0

Q ss_pred             hcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccccchh
Q psy2460           5 ASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNLQNEA   79 (83)
Q Consensus         5 ~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~~~~~   79 (83)
                      |.++.+|||+|.|||  ++|+|||+|||++|+||++         ....+.++++++++|..     |++++.++.+|++
T Consensus        25 r~~~~~~Dv~l~v~~--~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~   93 (119)
T 3m5b_A           25 RLRPALCDTLITVGS--QEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELR   93 (119)
T ss_dssp             HHTTTTCCEEEEETT--EEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHH
T ss_pred             HhcCCCcceEEEECC--EEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHH
Confidence            668899999999999  9999999999999999985         23568889999998632     8999999999999


Q ss_pred             hhh
Q psy2460          80 KLF   82 (83)
Q Consensus        80 ~~~   82 (83)
                      +|+
T Consensus        94 ~ll   96 (119)
T 3m5b_A           94 PLQ   96 (119)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            886

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=98.74  E-value=1.6e-08  Score=62.43  Aligned_cols=67  Identities=12%  Similarity=0.116  Sum_probs=45.8

Q ss_pred             EEEEe-CCcceeEehhHHHHhhhcHHHHHHhcC--CCCCCCCCCCCCCCCCHHHH------hh----cC---Cccc---c
Q psy2460          13 VTFLV-GDTREPVCAVKAVLAARSRVFHKMLYS--APSPQRKKDPPPKENKLRLF------LK----RS---SEPL---L   73 (83)
Q Consensus        13 v~~~v-~~~~~~~~aHk~iLaa~S~~F~~mf~~--~~~e~~~~~v~i~dv~~~~f------~~----~~---~~~~---l   73 (83)
                      |+++. +|  ++|.+||.+ |++|+||++||.+  ++.|...+.|++++|++.++      .+    ++   ..+.   +
T Consensus         4 v~L~SsDg--~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i   80 (97)
T 4ajy_C            4 VKLISSDG--HEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI   80 (97)
T ss_dssp             EEEECTTC--CEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred             EEEEecCC--cEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence            44543 44  999999999 9999999999987  66777778899999998864      32    23   3444   6


Q ss_pred             cccchhhhh
Q psy2460          74 NLQNEAKLF   82 (83)
Q Consensus        74 ~~~~~~~~~   82 (83)
                      +.+++.+|+
T Consensus        81 ~~~~l~eLl   89 (97)
T 4ajy_C           81 APEIALELL   89 (97)
T ss_dssp             CGGGHHHHH
T ss_pred             CHHHHHHHH
Confidence            777787775

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=97.11  E-value=0.00061  Score=41.98  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=38.7

Q ss_pred             EEEEe-CCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHH
Q psy2460          13 VTFLV-GDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLF   64 (83)
Q Consensus        13 v~~~v-~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f   64 (83)
                      |++.. +|  ..|.+++.+ |.+|.+++.|+.+++ +...+.+++++|+..++
T Consensus         6 v~L~SsDg--~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL   54 (99)
T 1hv2_A            6 VTLVSKDD--KEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHIL   54 (99)
T ss_dssp             EEEEETTT--EEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHH
T ss_pred             EEEEecCC--CEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHH
Confidence            55655 45  999999996 999999999998865 55557889999997764

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=96.90  E-value=0.00085  Score=41.04  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=34.7

Q ss_pred             EEEEeCCcceeEehhHHHHhhhcHHHHHHhcC-CC-CCCCCCCCCCCCCCHHHH
Q psy2460          13 VTFLVGDTREPVCAVKAVLAARSRVFHKMLYS-AP-SPQRKKDPPPKENKLRLF   64 (83)
Q Consensus        13 v~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~-~~-~e~~~~~v~i~dv~~~~f   64 (83)
                      |++.. .+|.+|.+++.+ |.+|++++.|+.+ +. .|...+.+++++|+..++
T Consensus         3 v~L~S-sDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL   54 (96)
T 2fnj_C            3 VKLIS-SDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVL   54 (96)
T ss_dssp             EEEEC-TTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHH
T ss_pred             EEEEe-cCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHH
Confidence            44544 224999999996 8999999999986 33 455567899999997764

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=96.72  E-value=0.00081  Score=43.61  Aligned_cols=45  Identities=13%  Similarity=0.091  Sum_probs=36.1

Q ss_pred             EEEEe-CCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHH
Q psy2460          13 VTFLV-GDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLF   64 (83)
Q Consensus        13 v~~~v-~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f   64 (83)
                      |++.. +|  ..|.+|+.+ |.+|+++++||.+..    .+.|++++|+..++
T Consensus         4 v~L~SsDg--~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL   49 (141)
T 1fs1_B            4 IKLQSSDG--EIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAIL   49 (141)
T ss_dssp             EEEECTTS--CEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHH
T ss_pred             EEEEeCCC--CEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHH
Confidence            55655 44  999999998 999999999997631    45788899998764

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=96.25  E-value=0.0005  Score=45.47  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=20.3

Q ss_pred             EEEEe-CCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHH
Q psy2460          13 VTFLV-GDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLF   64 (83)
Q Consensus        13 v~~~v-~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f   64 (83)
                      |++.. +|  ..|.+|+.+ |.+|++|+.||.+..   ..+.|++++|+..++
T Consensus         6 v~L~SsDg--~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL   52 (160)
T 2p1m_A            6 IVLKSSDG--ESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKIL   52 (160)
T ss_dssp             --CCC-----------CHH-HHTCTTTC---------------CCTTSCHHHH
T ss_pred             EEEEcCCC--CEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHH
Confidence            45543 45  999999998 899999999997643   235788899998864

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=93.55  E-value=0.086  Score=32.95  Aligned_cols=50  Identities=12%  Similarity=0.115  Sum_probs=34.2

Q ss_pred             EEEEeCCcceeEehhHHHHhhhcHHHHHHhcCC--CCCCCCCCCCCCCCCHHHH
Q psy2460          13 VTFLVGDTREPVCAVKAVLAARSRVFHKMLYSA--PSPQRKKDPPPKENKLRLF   64 (83)
Q Consensus        13 v~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~--~~e~~~~~v~i~dv~~~~f   64 (83)
                      |+++ ..++..|.+++. .|..|..++.|+...  ..+...+.++++.|+..++
T Consensus        19 v~L~-SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL   70 (112)
T 1vcb_B           19 VKLI-SSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVL   70 (112)
T ss_dssp             EEEE-CTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCCHHHH
T ss_pred             EEEE-cCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHH
Confidence            4454 233499999998 588999999999752  2344456788999987764

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=90.77  E-value=0.24  Score=32.77  Aligned_cols=51  Identities=16%  Similarity=0.185  Sum_probs=34.7

Q ss_pred             cEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCC----CCCCCCCCCCCCHHHH
Q psy2460          12 DVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSP----QRKKDPPPKENKLRLF   64 (83)
Q Consensus        12 Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e----~~~~~v~i~dv~~~~f   64 (83)
                      -|+++. .+|..|.+++.+ |..|.+++.|+.....+    .....|++++|+..++
T Consensus         8 ~i~L~S-sDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL   62 (169)
T 3v7d_A            8 NVVLVS-GEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVL   62 (169)
T ss_dssp             EEEEEC-TTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHH
T ss_pred             eEEEEe-CCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHH
Confidence            355554 334999999997 88899999999753321    2336788899987764

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=88.63  E-value=0.46  Score=29.01  Aligned_cols=50  Identities=12%  Similarity=0.140  Sum_probs=36.1

Q ss_pred             EEEEeCCcceeEehhHHHHhhhc-HHHHHHhcCCCC----CCCCCCCCCCCCCHHHHh
Q psy2460          13 VTFLVGDTREPVCAVKAVLAARS-RVFHKMLYSAPS----PQRKKDPPPKENKLRLFL   65 (83)
Q Consensus        13 v~~~v~~~~~~~~aHk~iLaa~S-~~F~~mf~~~~~----e~~~~~v~i~dv~~~~f~   65 (83)
                      |++-|||  +.|...+..|+... .+|.+||.+...    ....+++-| |-+|..|-
T Consensus         8 v~LNVGG--~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~   62 (107)
T 3drz_A            8 VRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFG   62 (107)
T ss_dssp             EEEEETT--EEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHH
T ss_pred             EEEEECC--EEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHH
Confidence            6778999  99999999998765 578999875421    113344544 77899873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	83
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	2e-04
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	2e-04

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPK 57
           LCDV  +V          + VLA  S++F  + +            PK
Sbjct: 27 TLCDVVIMVDSQEFHAH--RTVLACTSKMFEILFHRNSQHYTLDFLSPK 73

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 4  LASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRK 51
          L S   L DV  +V   +      K VL A S +F+ +          
Sbjct: 19 LRSRDILTDVVIVVSREQFRAH--KTVLMACSGLFYSIFTDQLKRNLS 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.85
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.81
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	91.72
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	89.33

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.6e-22  Score=125.97  Aligned_cols=80  Identities=24%  Similarity=0.109  Sum_probs=71.6

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.||+++.+|||++.++|  ++|+|||+|||++|+||++||.+++.+.....+.++++++++|..     |++++.++.
T Consensus        16 l~~l~~~~~~~Dv~l~v~~--~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~   93 (122)
T d1r29a_          16 LNRLRSRDILTDVVIVVSR--EQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLRE   93 (122)
T ss_dssp             HHHHHHTTCSCCEEEEETT--EEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCT
T ss_pred             HHHHHhcCCCeEEEEEECC--EEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCch
Confidence            4789999999999999999  999999999999999999999999988877777778999998632     888899999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+.+++
T Consensus        94 ~~v~~ll  100 (122)
T d1r29a_          94 GNIMAVM  100 (122)
T ss_dssp             TTHHHHH
T ss_pred             hhHHHHH
Confidence            9988875

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.3e-21  Score=121.38  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=65.9

Q ss_pred             ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460           1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL   75 (83)
Q Consensus         1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~   75 (83)
                      |+.+|.++.+|||++.|+|  ++|+|||+|||++|+||++||.+++     .++.+++++|++|..     ||+++.++.
T Consensus        19 l~~l~~~~~~~Dv~l~v~~--~~~~aHk~vLaa~S~~F~~lf~~~~-----~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~   91 (121)
T d1buoa_          19 ANQMRLAGTLCDVVIMVDS--QEFHAHRTVLACTSKMFEILFHRNS-----QHYTLDFLSPKTFQQILEYAYTATLQAKA   91 (121)
T ss_dssp             HHHHHHHTTTCCEEEEESS--CEEEECHHHHHHHCHHHHHHTTSCC-----SEEEECSSCHHHHHHHHHHHHHSCCCCCG
T ss_pred             HHHHHhcCCcEeEEEEECC--EEEEEEHHHhcccChhhhhhccCcc-----ceeecCCCCHHHHHHHHHheEccccCCcH
Confidence            4788999999999999999  9999999999999999999997643     468889999998632     888999999


Q ss_pred             cchhhhh
Q psy2460          76 QNEAKLF   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      +|+.+++
T Consensus        92 ~~v~~ll   98 (121)
T d1buoa_          92 EDLDDLL   98 (121)
T ss_dssp             GGHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.072  Score=30.82  Aligned_cols=43  Identities=12%  Similarity=0.062  Sum_probs=28.7

Q ss_pred             ceeEehhHHHHhhhcHHHHHHhcCC--CCCCCCCCCCCCCCCHHHH
Q psy2460          21 REPVCAVKAVLAARSRVFHKMLYSA--PSPQRKKDPPPKENKLRLF   64 (83)
Q Consensus        21 ~~~~~aHk~iLaa~S~~F~~mf~~~--~~e~~~~~v~i~dv~~~~f   64 (83)
                      |..|.+.+.+ |..|+.++.|+...  ..+...+.+++++|+..++
T Consensus        10 g~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL   54 (96)
T d2c9wc1          10 GHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVL   54 (96)
T ss_dssp             CCEEEEEHHH-HTTSHHHHHC------------CEEECTTCCHHHH
T ss_pred             CCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECCCCCHHHH
Confidence            4889999988 88999999999653  3445567788999987764

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.33  E-value=0.27  Score=28.24  Aligned_cols=49  Identities=14%  Similarity=0.081  Sum_probs=36.1

Q ss_pred             EEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHH
Q psy2460          13 VTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLF   64 (83)
Q Consensus        13 v~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f   64 (83)
                      |++... +|..|.+.+.+ |..|+.++.|+.+...+. ...+++++|+..++
T Consensus         6 v~L~Ss-Dg~~f~V~~~~-A~~S~tI~~ml~~~~~e~-~~~Ipl~~V~s~iL   54 (99)
T d1hv2a_           6 VTLVSK-DDKEYEISRSA-AMISPTLKAMIEGPFRES-KGRIELKQFDSHIL   54 (99)
T ss_dssp             EEEEET-TTEEEEEEHHH-HTTCHHHHHHHHSSTTTC-TTEEEETTSCHHHH
T ss_pred             EEEEcC-CCCEEEeeHHH-HHHhHHHHHHHHccCCCC-cCccccCCCChHHH
Confidence            444442 24899999988 778999999998655443 45678899987764