Psyllid ID: psy2492

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MMIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKEREDRRNT
Secondary Structure (PSIPRED)
ccEEEEEEEEEEcccHHHHHHHccccEEEEEEccccccEEEEEEEEEcccccccccccEEEEEEccccccccccccccEEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHEEEccccccccccccccEEEEEEccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mmikivmwpmrdrnlAGIRLLESQVTITRELrndgyhrnlvsnidiystipkidekdiqerfvrgsgpggqavaktnncvvlthiptgivikchqsrslsENRKTARELLVAQWDvqvngedsLNAQIRRIDEKRRATQEQKKRKLDALKKAWKEREDRRNT
Flexible Loop (DISEMBL)
mmikivmwpmrdrnlagIRLLESQVTITrelrndgyhrnlvsnidiystipkidekDIQERFVRgsgpggqavakTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAqwdvqvngedslnaqirridekrratqeqkkrKLDALkkawkeredrrnt
Low Complexity Region (SEG)
MMIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKEREDRRNT
Disordered region (IsUnstruct)
**IKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQS*********ARELLVAQWDVQVN*******************************************
Disordered Region (DISOPRED)
*MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQ***********RELLVAQWDV**********************************************
Disordered Region (DISEMBL)
MMIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEK***********LDALKKA**********
Disordered Region (DISPRO)
MMIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDE*R************ALKKAW*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGxxxxxxxxxxxxxxxxxxxxxKKRKLDALKKAWKEREDRRNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9H3J6	166	Probable peptide chain re	yes	N/A	0.475	0.463	0.571	1e-21
A5WUX7	156	Probable peptide chain re	yes	N/A	0.617	0.641	0.467	3e-21
Q80VP5	184	Probable peptide chain re	yes	N/A	0.475	0.418	0.545	7e-21
Q9Y811	162	Uncharacterized peptide c	yes	N/A	0.506	0.506	0.409	1e-10
Q53915	368	Peptide chain release fac	yes	N/A	0.604	0.266	0.333	1e-10
O67695	373	Peptide chain release fac	yes	N/A	0.407	0.176	0.445	1e-10
A1SHH9	357	Peptide chain release fac	yes	N/A	0.524	0.238	0.373	2e-10
A0RQM7	369	Peptide chain release fac	yes	N/A	0.364	0.159	0.491	2e-10
Q9X183	342	Peptide chain release fac	yes	N/A	0.679	0.321	0.341	3e-10
A0LVP4	369	Peptide chain release fac	yes	N/A	0.444	0.195	0.415	4e-10

>sp|Q9H3J6|CL065_HUMAN Probable peptide chain release factor C12orf65, mitochondrial OS=Homo sapiens GN=C12orf65 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 61/77 (79%)

Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           Y  +  +DE +++E+FV+G GPGGQA  KT+NCVVL HIP+GIV+KCHQ+RS+ +NRK A
Sbjct: 49  YPALLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLA 108

Query: 107 RELLVAQWDVQVNGEDS 123
           R++L  + DV  NGE+S
Sbjct: 109 RKILQEKVDVFYNGENS 125

May act as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion.
Homo sapiens (taxid: 9606)

>sp|A5WUX7|CL065_DANRE Probable peptide chain release factor C12orf65 homolog, mitochondrial OS=Danio rerio GN=si:ch211-275j6.5 PE=3 SV=1

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 7/107 (6%)

Query: 50  IPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAREL 109
           +P + E++++E+FVRGSGPGGQA  KT+NCVVL HIP+GIV+KCH++RS+  NRK ARE+
Sbjct: 39  LPVVHEEELEEQFVRGSGPGGQATNKTSNCVVLRHIPSGIVVKCHETRSVDLNRKRAREI 98

Query: 110 LVAQWDVQVNGEDS-----LNAQIRRIDEKRRATQE--QKKRKLDAL 149
           L  + +V   GE+S         +++  +KRR   E  +KKR+   +
Sbjct: 99  LREKLEVAYKGEESELLKMKKESMQKKQDKRRKVNENIEKKRRFKEM 145

May act as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion.

Danio rerio (taxid: 7955)

>sp|Q80VP5|CL065_MOUSE Probable peptide chain release factor C12orf65 homolog, mitochondrial OS=Mus musculus PE=1 SV=1

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 61/77 (79%)

Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           Y  +  ++E +++E+FV+G GPGGQA  KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK A
Sbjct: 52  YPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIA 111

Query: 107 RELLVAQWDVQVNGEDS 123
           R++L  + DV  NGE+S
Sbjct: 112 RKVLQEKVDVFYNGENS 128

May act as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion.

Mus musculus (taxid: 10090)

>sp|Q9Y811|YONI_SCHPO Uncharacterized peptide chain release factor-like protein C1105.18c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1105.18c PE=3 SV=2

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 50  IPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAREL 109
           + ++ E+DI+E F+ G GPGGQ + KT+    + HIPTGI+++   +RS  +NR  AR+ 
Sbjct: 44  LERLQEEDIEETFICGKGPGGQKINKTSIVAQVKHIPTGIIVRSQDTRSREQNRCIARKR 103

Query: 110 LVAQWDVQVNGEDSLNA-QIRRI 131
           L  + D   +G DSL A +++RI
Sbjct: 104 LTEKVDEFKHGNDSLLARKVQRI 126

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q53915|RF2_STRCO Peptide chain release factor 2 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=prfB PE=3 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 25/123 (20%)

Query: 33  NDGYHRNLVSNIDIYSTIPK-----IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 87
           N G  +   + ++I   + +     IDE +++    R SGPGGQ V  T++ V LTHIPT
Sbjct: 208 NQGRRQTSFAGVEILPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPT 267

Query: 88  GIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLD 147
           GIV+ C   RS  +N+ TA  +L A                 ++ E+RR   ++++ K+D
Sbjct: 268 GIVVSCQNERSQIQNKATAMNVLQA-----------------KLLERRR---QEEQAKMD 307

Query: 148 ALK 150
           ALK
Sbjct: 308 ALK 310

Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5) GN=prfB PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 8/74 (10%)

Query: 48  STIPKIDE--------KDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSL 99
           S +P+IDE        +D++    R SG GGQ V KT+  V +THIPTGI + C Q RS 
Sbjct: 219 SVMPQIDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVRITHIPTGITVSCQQERSQ 278

Query: 100 SENRKTARELLVAQ 113
            +N++ A ELL A+
Sbjct: 279 YQNKRKALELLKAK 292

Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|A1SHH9|RF1_NOCSJ Peptide chain release factor 1 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=prfA PE=3 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA----- 106
           +IDE D++    R SGPGGQ+V  T++ V +TH+PTGIV+ C   +S  +NR+ A     
Sbjct: 215 QIDENDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQNREQAMRILR 274

Query: 107 -RELLVAQWDVQVNGEDSLNAQIRRIDEKRR 136
            R L  AQ        ++  +Q+R +D   R
Sbjct: 275 SRLLAAAQEKADAEAGEARRSQVRTVDRSER 305

Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.

Nocardioides sp. (strain BAA-499 / JS614) (taxid: 196162)

>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=prfB PE=3 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
           +I+EKD++  + R SG GGQ V KT + V +THIPTGIV++C   RS  +N+ TA ++L
Sbjct: 232 EIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPTGIVVQCQNDRSQHKNKATAMKML 290

Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.

Campylobacter fetus subsp. fetus (strain 82-40) (taxid: 360106)

>sp|Q9X183|RF1_THEMA Peptide chain release factor 1 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=prfA PE=1 SV=1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 7/117 (5%)

Query: 3   IKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQER- 61
           I+ V++ ++ +N  GI   ES V   + +        + ++    + +P+I+EKDI+ R 
Sbjct: 136 IREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRP 195

Query: 62  ------FVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
                   R SG GGQ V KT + V +TH+PTGIV+ C   RS  +N++TA  +L A
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRA 252

Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

>sp|A0LVP4|RF2_ACIC1 Peptide chain release factor 2 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=prfB PE=3 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 41  VSNIDIYSTIPKIDEKDIQER-----FVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQ 95
            + +D+   + K D  DI E        R SGPGGQ V  T++ V +TH+PTGIV+ C  
Sbjct: 216 FAGVDVVPVVEKTDHIDIPEDEIRVDVFRSSGPGGQGVNTTDSAVRITHLPTGIVVTCQN 275

Query: 96  SRSLSENRKTARELLVA 112
            RS  +NR TA  +L A
Sbjct: 276 ERSQLQNRATAMMVLQA 292

Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.

Acidothermus cellulolyticus (strain ATCC 43068 / 11B) (taxid: 351607)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
307197489	165	Uncharacterized protein C12orf65-like pr	0.685	0.672	0.603	1e-31
312370878	225	hypothetical protein AND_22936 [Anophele	0.895	0.644	0.483	1e-31
332030644	163	Uncharacterized protein C12orf65-like pr	0.759	0.754	0.5	1e-29
157131147	142	hypothetical protein AaeL_AAEL012009 [Ae	0.679	0.774	0.6	1e-29
332373588	138	unknown [Dendroctonus ponderosae]	0.691	0.811	0.508	2e-29
307170845	138	Uncharacterized protein C12orf65-like pr	0.753	0.884	0.488	2e-29
322801028	220	hypothetical protein SINV_15156 [Solenop	0.685	0.504	0.522	3e-29
189241033	132	PREDICTED: similar to AGAP012195-PA [Tri	0.691	0.848	0.517	4e-29
270013378	179	hypothetical protein TcasGA2_TC011973 [T	0.691	0.625	0.517	4e-29
357624655	143	hypothetical protein KGM_09231 [Danaus p	0.685	0.776	0.576	6e-28

>gi|307197489|gb|EFN78723.1| Uncharacterized protein C12orf65-like protein [Harpegnathos saltator]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 89/111 (80%)

Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           YS +PK++E D++E+FVRGSGPGGQA  KTNN VVL H PTGIV+KCH++RSL +N+K A
Sbjct: 52  YSNLPKLEEADLKEQFVRGSGPGGQATNKTNNAVVLKHKPTGIVVKCHETRSLWDNQKRA 111

Query: 107 RELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKERE 157
           RELLV + D  +N E S+ AQIR I +K+RA +E K++KL  +KKA++ERE
Sbjct: 112 RELLVTKLDNLLNKEHSIEAQIRAIQQKQRACKECKRKKLAEMKKAFQERE 162

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312370878|gb|EFR19185.1| hypothetical protein AND_22936 [Anopheles darlingi]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 102/153 (66%), Gaps = 8/153 (5%)

Query: 5   IVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVR 64
           +++WP        +R   +  TIT      G  R    +ID  S +P + E D++E FVR
Sbjct: 74  LLLWPT-----IAVRASTATTTITNAY--SGGWRMFSKSID-NSRVPVLQEDDLEESFVR 125

Query: 65  GSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSL 124
           GSGPGGQ+VAKTNN VVLTH PTG+V++CH SRSL ENR+ AR+LLV + D  +NGE S+
Sbjct: 126 GSGPGGQSVAKTNNKVVLTHKPTGLVVQCHTSRSLFENRRIARQLLVTKLDQLINGEQSV 185

Query: 125 NAQIRRIDEKRRATQEQKKRKLDALKKAWKERE 157
            AQ +R+D++++    ++K +L A KKAWKERE
Sbjct: 186 EAQRQRLDQRKQTEAARRKMRLQAKKKAWKERE 218

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030644|gb|EGI70332.1| Uncharacterized protein C12orf65-like protein [Acromyrmex echinatior]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 95/128 (74%), Gaps = 5/128 (3%)

Query: 30  ELRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 89
           ++RN  + R L      YS +PK+DE D++E+F+RGSGPGGQA  KTNN V+L H PTG+
Sbjct: 38  QVRNKSFKRYLD-----YSNVPKLDEIDLEEQFIRGSGPGGQATNKTNNAVLLKHKPTGL 92

Query: 90  VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDAL 149
           V+KCH++RS  +N+K ARE+LV + D  +N E S+ AQI  +++K +A +E K++KL+ +
Sbjct: 93  VVKCHETRSQWDNKKRAREILVTKLDNLLNKERSIEAQIHALEKKEQARKEYKRKKLNEM 152

Query: 150 KKAWKERE 157
           KKA++ERE
Sbjct: 153 KKAFRERE 160

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131147|ref|XP_001662139.1| hypothetical protein AaeL_AAEL012009 [Aedes aegypti] gi|157137107|ref|XP_001663890.1| hypothetical protein AaeL_AAEL013711 [Aedes aegypti] gi|108869799|gb|EAT34024.1| AAEL013711-PA [Aedes aegypti] gi|108871632|gb|EAT35857.1| AAEL012009-PA [Aedes aegypti]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 84/110 (76%)

Query: 48  STIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAR 107
           S +P + + D++E FVRGSGPGGQAVAKTNN VVLTH PTGIVI+CH SRSL +NR+ AR
Sbjct: 28  SKVPALRDDDLEETFVRGSGPGGQAVAKTNNKVVLTHKPTGIVIQCHSSRSLFKNREEAR 87

Query: 108 ELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKERE 157
            LLVA+ D   NG+ S+ AQ RRID+K+ +   +++ K   +KKAWKERE
Sbjct: 88  RLLVAKLDELENGDQSVEAQQRRIDQKKHSEAARRRSKRQEMKKAWKERE 137

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373588|gb|AEE61935.1| unknown [Dendroctonus ponderosae]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 89/112 (79%)

Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           YS +P ++E+D++E+ V+GSGPGGQ V+KT++C+VL HIPTGIV+KC ++RS+ +N+K A
Sbjct: 25  YSQVPALNEQDLEEKQVKGSGPGGQKVSKTSSCIVLKHIPTGIVVKCQETRSVLQNKKIA 84

Query: 107 RELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKERED 158
           R  L+ + D  +NGE+S+ AQI+R++ K+R   EQK+ KL+ LK+ WKE ++
Sbjct: 85  RLHLITKLDNTINGENSVEAQIKRLENKKRGCNEQKREKLNQLKQKWKELQN 136

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170845|gb|EFN62956.1| Uncharacterized protein C12orf65-like protein [Camponotus floridanus]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 95/127 (74%), Gaps = 5/127 (3%)

Query: 31  LRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIV 90
           +R+  Y R+L      YS +PK+DE D++E+F+RGSGPGGQA  KTNN V L H PTG+V
Sbjct: 14  VRSKSYKRHLD-----YSKVPKLDEADLEEKFIRGSGPGGQATNKTNNAVSLKHKPTGLV 68

Query: 91  IKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALK 150
           +KCH++RSL +N+K ARE+++ + D  +N E S+ AQIR +++K+++ +E K+++L  +K
Sbjct: 69  VKCHETRSLWDNKKRAREIMITKLDNLLNKEYSIEAQIRGLEKKQQSQKENKRKRLTEMK 128

Query: 151 KAWKERE 157
           KA+ ERE
Sbjct: 129 KAFHERE 135

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801028|gb|EFZ21809.1| hypothetical protein SINV_15156 [Solenopsis invicta]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 87/111 (78%)

Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           YS +PK++E D++E+F+RGSGPGGQA  KTNN V+L H PTG ++KCH++RS  +N+K A
Sbjct: 107 YSNVPKLNEADLEEQFIRGSGPGGQATNKTNNAVLLKHKPTGFIVKCHETRSQWDNKKRA 166

Query: 107 RELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKERE 157
           RE+L+ + D  +N E S+ AQIR ++EK++  +E K++K D +KKA++ERE
Sbjct: 167 REILITKLDNLLNKERSIEAQIRALEEKQQTRKEYKRKKRDEMKKAFRERE 217

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241033|ref|XP_971712.2| PREDICTED: similar to AGAP012195-PA [Tribolium castaneum]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 87/112 (77%)

Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           YS +P++ E +++E+ VRGSGPGGQA  KT+NCVVL H+PTG+V+KCH++RSL +NRK A
Sbjct: 19  YSRVPQLVESELEEQHVRGSGPGGQATNKTSNCVVLKHVPTGLVVKCHETRSLDQNRKKA 78

Query: 107 RELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKERED 158
           R+ LV + D  +NG+ S+ AQ+R I++K    +E+K+ +L+ LK  WK+RE+
Sbjct: 79  RQYLVTKLDNLLNGDQSVEAQMREIEKKNTLNKERKRERLNKLKAEWKKREN 130

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013378|gb|EFA09826.1| hypothetical protein TcasGA2_TC011973 [Tribolium castaneum]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 87/112 (77%)

Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           YS +P++ E +++E+ VRGSGPGGQA  KT+NCVVL H+PTG+V+KCH++RSL +NRK A
Sbjct: 66  YSRVPQLVESELEEQHVRGSGPGGQATNKTSNCVVLKHVPTGLVVKCHETRSLDQNRKKA 125

Query: 107 RELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKERED 158
           R+ LV + D  +NG+ S+ AQ+R I++K    +E+K+ +L+ LK  WK+RE+
Sbjct: 126 RQYLVTKLDNLLNGDQSVEAQMREIEKKNTLNKERKRERLNKLKAEWKKREN 177

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624655|gb|EHJ75351.1| hypothetical protein KGM_09231 [Danaus plexippus]

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/111 (57%), Positives = 85/111 (76%)

Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           +S +PKI+E D+ E+FVRGSGPGG AV K +NCVVLTHIPTGIVIKCH SRS  ENRK A
Sbjct: 30  FSKVPKINECDLTEQFVRGSGPGGSAVNKNSNCVVLTHIPTGIVIKCHTSRSQDENRKMA 89

Query: 107 RELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKERE 157
           R++L+A+ D  +NG++S+ +Q + I+E R    E KK+K   +K+ WK+RE
Sbjct: 90  RDMLIAKLDDIINGKNSVESQKKMIEENRFKKVEYKKKKRAEIKEKWKKRE 140

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
FB|FBgn0050100	146	CG30100 [Drosophila melanogast	0.703	0.780	0.512	2.4e-28
UNIPROTKB|F1MLX1	173	C17H12orf65 "Uncharacterized p	0.685	0.641	0.517	8.4e-26
UNIPROTKB|E2QXR1	239	C12orf65 "Uncharacterized prot	0.679	0.460	0.495	1.2e-24
UNIPROTKB|F1RFL3	187	C12orf65 "Uncharacterized prot	0.660	0.572	0.526	1.6e-24
UNIPROTKB|F1M2Z8	183	RGD1563482 "Protein RGD1563482	0.679	0.601	0.449	8.7e-24
UNIPROTKB|Q9H3J6	166	C12orf65 "Probable peptide cha	0.635	0.620	0.504	1.4e-23
MGI|MGI:1919900	184	2810006K23Rik "RIKEN cDNA 2810	0.697	0.614	0.474	3.8e-23
UNIPROTKB|F1NSN8	141	F1NSN8 "Uncharacterized protei	0.635	0.730	0.476	2.6e-22
UNIPROTKB|F5H4X5	138	C12orf65 "Probable peptide cha	0.555	0.652	0.505	1.9e-21
POMBASE|SPBC1105.18c	162	SPBC1105.18c "peptide release	0.592	0.592	0.391	4.2e-15

FB|FBgn0050100 CG30100 [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 60/117 (51%), Positives = 87/117 (74%)

Query:    42 SNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSE 101
             SN+D YS  P + E DI+E F+RGSGPGGQAV KT+NCV L H+PT I +KCH  R  S+
Sbjct:    20 SNLD-YSRFPVLQESDIEETFMRGSGPGGQAVNKTSNCVFLRHLPTNITVKCHTHRLASK 78

Query:   102 NRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKR-KLDALKKAWKERE 157
             NR  AR+LL+ + DV +NGE S+ AQ++   E+R++T+ ++++ KL  +KK+W++RE
Sbjct:    79 NRVEARKLLLEKLDVHLNGEHSIAAQVKA-QEQRKSTERRRRQEKLQEMKKSWQDRE 134

GO:0003747 "translation release factor activity" evidence=IEA

GO:0006415 "translational termination" evidence=IEA

UNIPROTKB|F1MLX1 C17H12orf65 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 60/116 (51%), Positives = 85/116 (73%)

Query:    49 TIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARE 108
             T+  +DE++++E+FV+G GPGGQA  KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK AR 
Sbjct:    52 TLLSLDERELEEQFVKGHGPGGQATNKTSNCVVLRHVPSGIVVKCHQTRSVDQNRKLARR 111

Query:   109 LLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDAL--KKAWKER-EDRRN 161
             +L  + DV  NGE+SL  + +R  EKR+  QE+KKR  + L  KK  KE+ E  +N
Sbjct:   112 ILQEKVDVFYNGENSLVCREKREAEKRK--QERKKRAKETLEKKKLLKEQWESSKN 165

GO:0003747 "translation release factor activity" evidence=IEA

UNIPROTKB|E2QXR1 C12orf65 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 57/115 (49%), Positives = 85/115 (73%)

Query:    50 IPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAREL 109
             +P +DE +++E+FV+G GPGGQA  KT+NCVVL HIP+GIV+KCHQ+RS+ +NRK AR++
Sbjct:   125 LPLLDESELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARQI 184

Query:   110 LVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDAL--KKAWKE-REDRRN 161
             L  + D+  NGE+S+  + ++  EK++  QE+K+R  + L  KK  KE RE  +N
Sbjct:   185 LQEKVDIFYNGENSIVYKEKQEAEKKK--QERKRRAKETLEKKKLLKELRELSKN 237

GO:0003747 "translation release factor activity" evidence=IEA

UNIPROTKB|F1RFL3 C12orf65 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 59/112 (52%), Positives = 82/112 (73%)

Query:    53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
             +DE++++E+FV+G GPGGQA  KT+NCVVL HIP+GIV+KCHQ+RS+ +NRK AR +L  
Sbjct:    58 LDERELEEQFVKGHGPGGQATNKTSNCVVLRHIPSGIVVKCHQTRSVDQNRKLARRILQE 117

Query:   113 QWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDAL--KKAWKER-EDRRN 161
             + DV  NGE+S   + +R  EKR+  QE+KKR  + L  KK  KE+ E  +N
Sbjct:   118 KVDVFYNGENSPVYKEKREAEKRK--QERKKRAKETLEKKKLLKEQWESSKN 167

GO:0003747 "translation release factor activity" evidence=IEA

UNIPROTKB|F1M2Z8 RGD1563482 "Protein RGD1563482" [Rattus norvegicus (taxid:10116)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 53/118 (44%), Positives = 84/118 (71%)

Query:    47 YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
             Y  +  ++E +++E+FV+G GPGGQA  KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK A
Sbjct:    51 YPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKMA 110

Query:   107 RELLVAQWDVQVNGEDS------LNAQIRRIDEKRRATQEQKKRKLDALKKAWKERED 158
             R++L  + DV  NGE+S      L  + R+ ++K+RA +  +K+KL  LK+ W+  ++
Sbjct:   111 RKILQEKVDVFYNGENSPIHKEKLEGERRKREKKKRAKETLEKKKL--LKELWEASQN 166

GO:0003747 "translation release factor activity" evidence=IEA

UNIPROTKB|Q9H3J6 C12orf65 "Probable peptide chain release factor C12orf65, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/105 (50%), Positives = 77/105 (73%)

Query:    47 YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
             Y  +  +DE +++E+FV+G GPGGQA  KT+NCVVL HIP+GIV+KCHQ+RS+ +NRK A
Sbjct:    49 YPALLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLA 108

Query:   107 RELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKK 151
             R++L  + DV  NGE+S   + +R   K++  QE+KKR  + L+K
Sbjct:   109 RKILQEKVDVFYNGENSPVHKEKREAAKKK--QERKKRAKETLEK 151

GO:0003747 "translation release factor activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=NAS

MGI|MGI:1919900 2810006K23Rik "RIKEN cDNA 2810006K23 gene" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 56/118 (47%), Positives = 83/118 (70%)

Query:    47 YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
             Y  +  ++E +++E+FV+G GPGGQA  KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK A
Sbjct:    52 YPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIA 111

Query:   107 RELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDAL--KKAWKE-REDRRN 161
             R++L  + DV  NGE+S      +++ +RR  +E+KKR  + L  KK  KE RE  +N
Sbjct:   112 RKVLQEKVDVFYNGENS-PVHKEKLEAERRK-RERKKRAKETLEKKKLLKELREASQN 167

GO:0003674 "molecular_function" evidence=ND

GO:0003747 "translation release factor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006415 "translational termination" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NSN8 F1NSN8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/105 (47%), Positives = 77/105 (73%)

Query:    52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
             ++ E +++E+FVRG GPGGQA  KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK ARE+L 
Sbjct:    31 ELTEAELKEQFVRGDGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVEKNRKIAREILQ 90

Query:   112 AQWDVQVNGEDS-LNAQIRRIDEKRRATQEQKKRKLDALKKAWKE 155
              + D+   GEDS +  +I+  ++K++  + + K  L+  KK +KE
Sbjct:    91 EKVDLFYKGEDSDVFKEIKASEKKKQEKKRRAKENLER-KKHFKE 134

GO:0003747 "translation release factor activity" evidence=IEA

UNIPROTKB|F5H4X5 C12orf65 "Probable peptide chain release factor C12orf65, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 48/95 (50%), Positives = 70/95 (73%)

Query:    47 YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
             Y  +  +DE +++E+FV+G GPGGQA  KT+NCVVL HIP+GIV+KCHQ+RS+ +NRK A
Sbjct:    49 YPALLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLA 108

Query:   107 RELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQ 141
             R++L  + DV  NGE   N+ + +  EKR A +++
Sbjct:   109 RKILQEKVDVFYNGE---NSPVHK--EKREAAKKK 138

GO:0003747 "translation release factor activity" evidence=IEA

POMBASE|SPBC1105.18c SPBC1105.18c "peptide release factor (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/97 (39%), Positives = 64/97 (65%)

Query:    50 IPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAREL 109
             + ++ E+DI+E F+ G GPGGQ + KT+    + HIPTGI+++   +RS  +NR  AR+ 
Sbjct:    44 LERLQEEDIEETFICGKGPGGQKINKTSIVAQVKHIPTGIIVRSQDTRSREQNRCIARKR 103

Query:   110 LVAQWDVQVNGEDSLNAQ-IRRIDEKRRATQEQKKRK 145
             L  + D   +G DSL A+ ++RI +K++  +++ KRK
Sbjct:   104 LTEKVDEFKHGNDSLLARKVQRIVKKKKQREKKSKRK 140

GO:0003747 "translation release factor activity" evidence=IEA

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISS

GO:0006415 "translational termination" evidence=IC

GO:0032543 "mitochondrial translation" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5WUX7	CL065_DANRE	No assigned EC number	0.4672	0.6172	0.6410	yes	N/A
Q9H3J6	CL065_HUMAN	No assigned EC number	0.5714	0.4753	0.4638	yes	N/A
Q80VP5	CL065_MOUSE	No assigned EC number	0.5454	0.4753	0.4184	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
pfam00472	114	pfam00472, RF-1, RF-1 domain	4e-23
COG1186	239	COG1186, PrfB, Protein chain release factor B [Tra	3e-15
TIGR00019	360	TIGR00019, prfA, peptide chain release factor 1	2e-13
PRK00578	367	PRK00578, prfB, peptide chain release factor 2; Va	1e-12
TIGR00020	364	TIGR00020, prfB, peptide chain release factor 2	1e-12
PRK00591	359	PRK00591, prfA, peptide chain release factor 1; Va	4e-12
COG0216	363	COG0216, PrfA, Protein chain release factor A [Tra	5e-12
TIGR03072	200	TIGR03072, release_prfH, putative peptide chain re	2e-11
PRK08179	200	PRK08179, prfH, peptide chain release factor-like	3e-11
PRK07342	339	PRK07342, PRK07342, peptide chain release factor 2	6e-11
PRK05589	325	PRK05589, PRK05589, peptide chain release factor 2	1e-10
PRK08787	313	PRK08787, PRK08787, peptide chain release factor 2	3e-10
PRK09256	138	PRK09256, PRK09256, hypothetical protein; Provisio	4e-08
PRK06746	326	PRK06746, PRK06746, peptide chain release factor 2	1e-06

>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain

 Score = 87.6 bits (218), Expect = 4e-23
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 14/110 (12%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
           +I E D++    R SGPGGQ V KT + V LTH+PTGIV+KC + RS  +NR+ A E L 
Sbjct: 9   EIPESDLRIDTFRSSGPGGQNVNKTESAVRLTHLPTGIVVKCQEERSQHKNREKALERLK 68

Query: 112 AQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKEREDRRN 161
                         A++   + +++  + +  R     +   KE+    N
Sbjct: 69  --------------AKLYEAELQKKREKTKPTRASQVRRGDRKEKIRTYN 104

This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis. Length = 114

>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis]

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 18/114 (15%)

Query: 38  RNLVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSR 97
             +   +DI   I +I + D++    R SG GGQ V KT++ V LTH+PTGIV+ C   R
Sbjct: 93  VEVFPELDISIEI-EIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNER 151

Query: 98  SLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKK 151
           S   N+  AR++L                   ++    +  + Q+K +  ALKK
Sbjct: 152 SQHLNKALARKML-----------------KGKLYILAQEKRSQEKNRERALKK 188

Length = 239

>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 51  PKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
             I+  D++    R SG GGQ V  T++ V +TH+PTGIV++C   RS  +N+  A ++L
Sbjct: 216 VDINPADLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVL 275

Query: 111 VAQ-WDVQVNGEDSLNAQIRR 130
            A+ ++ +   + +  A  R+
Sbjct: 276 RARLYEAEQEKQQAAQASTRK 296

This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift [Protein synthesis, Translation factors]. Length = 360

>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 43  NIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 102
            I+I     +I+ KD++    R SG GGQ V KT++ V +THIPTGIV++C   RS  +N
Sbjct: 227 TIEI-----EINPKDLRIDTYRSSGAGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHQN 281

Query: 103 RKTARELLVA 112
           + +A ++L A
Sbjct: 282 KASAMKMLKA 291

Length = 367

>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 53  IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
           I  +D++    R SG GGQ V KT++ V +THIPTGIV++C   RS  +N+ +A ++L A
Sbjct: 232 IKPEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKA 291

Query: 113 Q 113
           +
Sbjct: 292 K 292

In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a PFAM model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc [Protein synthesis, Translation factors]. Length = 364

>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated

 Score = 62.4 bits (153), Expect = 4e-12
 Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 51  PKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
            +I+ KD++    R SG GGQ V  T++ V +TH+PTGIV++C   RS  +N+  A ++L
Sbjct: 216 VEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVL 275

Query: 111 VAQ-WDVQVNGEDSLNAQIRR 130
            A+ +D +     +  A  R+
Sbjct: 276 RARLYDAERQKAQAEEAATRK 296

Length = 359

>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis]

 Score = 62.2 bits (152), Expect = 5e-12
 Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 51  PKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
            +I+ KD++    R SG GGQ V  T++ V +TH+PTGIV++C   RS  +N+  A ++L
Sbjct: 218 IEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVL 277

Query: 111 VAQ-WDVQVNGEDSLNAQIRR 130
            A+ +D +     +  A  R+
Sbjct: 278 RARLYDAERQKAQAEEASERK 298

Length = 363

>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           +S   +  E +I+   +R SGPGGQ V KT + V  TH+ +GI +K    RS   N++ A
Sbjct: 97  FSASEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLA 156

Query: 107 RELL---VAQWDVQ 117
             LL   +A    +
Sbjct: 157 TLLLAVRLADLQQE 170

Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon [Protein synthesis, Translation factors]. Length = 200

>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 55  EKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL---V 111
             +I+   +R SGPGGQ V KT++ V  TH+ +GI +K    RS   N++ AR L+   +
Sbjct: 106 SDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKL 165

Query: 112 AQWDVQVNGE 121
            Q   + +  
Sbjct: 166 EQQQQEQSAA 175

Length = 200

>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 53  IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
           ++E D++    R SG GGQ V  T++ V +THIPTGIV++C Q RS  +NR  A  +L A
Sbjct: 196 VNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQERSQHKNRAKAWSMLRA 255

Query: 113 Q 113
           +
Sbjct: 256 R 256

Length = 339

>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 7/71 (9%)

Query: 43  NIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 102
           +I+I S   KID         R  G GGQ V KT + V +THIPTGIV++C   RS   N
Sbjct: 190 DIEIRSEDLKIDT-------YRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQHSN 242

Query: 103 RKTARELLVAQ 113
           ++TA ++L ++
Sbjct: 243 KETAMKMLKSK 253

Length = 325

>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional

 Score = 57.0 bits (137), Expect = 3e-10
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 43  NIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 102
           NI+I      I+  D++    R SG GGQ V KT + V +THIPT  V+ C   RS  +N
Sbjct: 168 NIEI-----DINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQN 222

Query: 103 RKTARELLVAQ 113
           R  A ++L A+
Sbjct: 223 RDNAMKMLAAK 233

Length = 313

>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 32/123 (26%)

Query: 53  IDEKDIQERFVRGSGPGGQAVAKTNNCVVL------THIP---------------TG--- 88
           I E +++ RF+R SGPGGQ V K +  V L      + +P               T    
Sbjct: 10  IPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGV 69

Query: 89  IVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDA 148
           IVIK  + RS   NR+ A E LVA         ++L    +R     + T+  K+R+L++
Sbjct: 70  IVIKAQEFRSQERNREDALERLVALI------REALKPPKKRR--ATKPTRGSKERRLES 121

Query: 149 LKK 151
            K+
Sbjct: 122 KKQ 124

Length = 138

>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
           ++  +D++    R SG GGQ V  T++ V +TH PT  V+ C   RS  +NR+ A ++L 
Sbjct: 193 EVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQIKNREHAMKMLK 252

Query: 112 AQWDVQVNGEDSLNAQIRRIDEKRRATQE 140
           A+       +  L  Q   +DE R   +E
Sbjct: 253 AKL-----YQKKLEEQQAELDEIRGEQKE 276

Length = 326

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
COG0216	363	PrfA Protein chain release factor A [Translation,	100.0
PRK08787	313	peptide chain release factor 2; Provisional	100.0
KOG2726|consensus	386		100.0
PRK05589	325	peptide chain release factor 2; Provisional	100.0
PRK07342	339	peptide chain release factor 2; Provisional	100.0
PRK06746	326	peptide chain release factor 2; Provisional	100.0
TIGR00019	360	prfA peptide chain release factor 1. This model de	100.0
PRK08179	200	prfH peptide chain release factor-like protein; Re	100.0
TIGR03072	200	release_prfH putative peptide chain release factor	100.0
TIGR00020	364	prfB peptide chain release factor 2. In many but n	100.0
PRK00591	359	prfA peptide chain release factor 1; Validated	100.0
PRK00578	367	prfB peptide chain release factor 2; Validated	100.0
COG1186	239	PrfB Protein chain release factor B [Translation,	100.0
PRK09256	138	hypothetical protein; Provisional	99.97
PF00472	113	RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha	99.96
KOG3429|consensus	172		99.87

>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-42  Score=301.21  Aligned_cols=116  Identities=26%  Similarity=0.327  Sum_probs=106.2

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc-------cccccCCC---CCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV-------SNIDIYST---IPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~-------~~v~~~~~---~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |+|.+.+.|.|.++|+  .|+||+|||||||+|.+.+.+.       ..|-|..+   .+.|+|+||+|+++||||+|||
T Consensus       161 G~kEii~~I~G~gvys--~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQ  238 (363)
T COG0216         161 GYKEIIASISGKGVYS--RLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQ  238 (363)
T ss_pred             CceEEEEEEeccchhh--hhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCC
Confidence            6899999999999999  9999999999999999965443       33445433   5899999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||+|+|+|||+|+||||+|.||++|||++||+.||..|+++|+++..
T Consensus       239 hVNtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~  286 (363)
T COG0216         239 HVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAER  286 (363)
T ss_pred             CcCccchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875

>PRK08787 peptide chain release factor 2; Provisional

Probab=100.00  E-value=1.4e-40  Score=287.76  Aligned_cols=116  Identities=28%  Similarity=0.384  Sum_probs=105.7

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--ccc--cCC---CCCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NID--IYS---TIPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v~--~~~---~~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |||+|++.|+|++|||  +|++|+|||||||+||+++.+.   +  .|+  |..   .++.|++.||+|+|+||||||||
T Consensus       114 Giksa~l~I~G~~ayg--~lk~E~GvHRv~R~sp~~s~~rrhTsfasV~V~P~~~~~~~i~i~~~dl~~~~~RssG~GGQ  191 (313)
T PRK08787        114 GIKSATVRIEGEYAYG--WLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQ  191 (313)
T ss_pred             eeeEEEEEEecccHHH--HHhhccCeeEEEecCCCCCCCCEEeeeEEEEEecCcCcccccccChhHeEEEEEECCCCCCC
Confidence            7999999999999999  9999999999999999976553   2  232  433   25789999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|.+...
T Consensus       192 ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~~~  239 (313)
T PRK08787        192 HVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEV  239 (313)
T ss_pred             CcCCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999864

>KOG2726|consensus

Probab=100.00  E-value=5e-41  Score=295.88  Aligned_cols=121  Identities=35%  Similarity=0.439  Sum_probs=107.9

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCcccc-----ccccc--cC----CCCCCcCCCCeEEEEeecCCCCC
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNL-----VSNID--IY----STIPKIDEKDIQERFVRGSGPGG   70 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~-----~~~v~--~~----~~~~~i~~~dl~i~~~RssGpGG   70 (162)
                      ||++|+++|+|+++||  +|++|.|||||||+|+++..+     ++.|.  |.    ..++.|+++||+|+|+|||||||
T Consensus       185 Gi~~At~~i~G~~ayg--~l~~E~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GG  262 (386)
T KOG2726|consen  185 GIKSATLEIEGESAYG--YLKFEAGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGG  262 (386)
T ss_pred             cceeeeeEecccchhh--eeeccCcccceeecCCcccccccccccceEEEeccCCCCccceecCchheeEEecccCCCCc
Confidence            7999999999999999  999999999999999984332     22332  32    34688999999999999999999


Q ss_pred             cccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhcCCCCH
Q psy2492          71 QAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSL  124 (162)
Q Consensus        71 Q~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~~ps~  124 (162)
                      ||||||+|+|+|+|+||||+|+||++|||++||+.|+.+|+++|++....+++.
T Consensus       263 QhvNktdsaVrl~HiPTGIvv~cq~eRSq~~Nr~~A~~~L~akL~~~~~~~~~~  316 (386)
T KOG2726|consen  263 QHVNKTDSAVRLTHIPTGIVVECQEERSQHKNRALALKRLRAKLAVIYREEKSE  316 (386)
T ss_pred             ccccccccceEEEeecCceEEEeecHHhHHhhHHHHHHHHHHHHHHHHHhhhhH
Confidence            999999999999999999999999999999999999999999999999855443

>PRK05589 peptide chain release factor 2; Provisional

Probab=100.00  E-value=4.3e-40  Score=286.08  Aligned_cols=116  Identities=32%  Similarity=0.398  Sum_probs=105.5

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c----ccccCCC---CCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S----NIDIYST---IPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~----~v~~~~~---~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      ||+||++.|+|+++||  +|++|+|||||||+||+.+.+.   +    .|-|.+.   ++.|+++||+|+|+||||||||
T Consensus       134 g~ks~~~~i~G~~ay~--~lk~E~GvHrv~r~s~~~~~~rr~ts~a~V~VlP~~~~~~~~~i~~~dl~~~~~rssG~GGQ  211 (325)
T PRK05589        134 GIKSVTLKITGEFAYG--YLKAEKGIHRLVRISPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQ  211 (325)
T ss_pred             ceEEEEEEEeccCHHH--HHhhccceEEEEEcCCCCCCCCeEeeeEEEEEecCcCccccccCCchheEEEEeeCCCCCCC
Confidence            7999999999999999  9999999999999999976543   2    2224432   5799999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|+|+|+|+||||+|+||++|||++||+.|+.+|+++|++...
T Consensus       212 ~VNkt~saVrl~H~ptgi~v~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~  259 (325)
T PRK05589        212 HVNKTESAVRITHIPTGIVVQCQNERSQHSNKETAMKMLKSKLVELKE  259 (325)
T ss_pred             cccceeeEEEEEECCCCEEEEECCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999864

>PRK07342 peptide chain release factor 2; Provisional

Probab=100.00  E-value=1.1e-39  Score=284.70  Aligned_cols=116  Identities=33%  Similarity=0.425  Sum_probs=105.6

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c----ccccCCC---CCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S----NIDIYST---IPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~----~v~~~~~---~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      ||++|++.|+|++|||  +|++|+|||||||+||+.+.+.   +    .|-|.+.   ++.|+++||+|+|+||||||||
T Consensus       137 g~ksa~l~i~G~~ay~--~lk~E~GvHrv~rvsp~~~~~rrhTs~a~V~VlP~~~~~~~~~i~~~dl~~~~~RssG~GGQ  214 (339)
T PRK07342        137 GIKSATILVKGHNAYG--WLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVRIDTYRSSGAGGQ  214 (339)
T ss_pred             ceEEEEEEEeccCHHH--HHhhccceeEEEecCCCCCCCCeEeEEEEEEEEcCCCcccccccCcccEEEEEEECCCCCCC
Confidence            7999999999999999  9999999999999999976553   2    2224332   4789999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|++...
T Consensus       215 ~VNkt~saVrl~H~ptgi~v~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~  262 (339)
T PRK07342        215 HVNTTDSAVRITHIPTGIVVQCQQERSQHKNRAKAWSMLRARLYEEEL  262 (339)
T ss_pred             CccceeeeEEEEEcCCcEEEEECCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998874

>PRK06746 peptide chain release factor 2; Provisional

Probab=100.00  E-value=8.3e-40  Score=284.32  Aligned_cols=116  Identities=28%  Similarity=0.339  Sum_probs=105.8

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--cc--ccCC---CCCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NI--DIYS---TIPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v--~~~~---~~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |||+|++.|+|+++||  +|++|+|||||||+||+++.+.   +  .|  .|..   .++.|+++||+|+|+||||||||
T Consensus       135 g~ksa~l~i~G~~ay~--~lk~E~GvHrv~Rvsp~~s~~rrhTsfa~V~v~P~~~~~~~i~i~~~dl~~~~~rssG~GGQ  212 (326)
T PRK06746        135 GIKSVTLLIKGHNAYG--YLKAEKGVHRLVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQ  212 (326)
T ss_pred             ceEEEEEEEeccCHHH--HHhhccceEEEEecCCCCCCCCeEeeEEEEEEecCcCCccccccChHHeEEEEEeCCCCCCC
Confidence            7999999999999999  9999999999999999976553   1  22  2332   35889999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|+|+|+|+||||+|.||++|||++||+.|+.+|+++|++...
T Consensus       213 ~vNkt~saVrl~h~ptgi~v~~q~~RSQ~~Nk~~A~~~L~akL~~~~~  260 (326)
T PRK06746        213 HVNTTDSAVRITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKL  260 (326)
T ss_pred             CccceeeEEEEEEeCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875

>TIGR00019 prfA peptide chain release factor 1

Probab=100.00  E-value=3.7e-39  Score=283.42  Aligned_cols=116  Identities=27%  Similarity=0.322  Sum_probs=105.2

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--cc--ccCC--CCCCcCCCCeEEEEeecCCCCCcc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NI--DIYS--TIPKIDEKDIQERFVRGSGPGGQA   72 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v--~~~~--~~~~i~~~dl~i~~~RssGpGGQ~   72 (162)
                      |||||++.|+|+++||  +|++|.|||||||+|++++...   +  .|  -|.+  ..+.|+++||+|+|+|||||||||
T Consensus       160 g~ksa~l~i~G~~ay~--~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GGQ~  237 (360)
T TIGR00019       160 GYKEVIAEIKGDGVYS--RLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEEVEVDINPADLRIDTFRSSGAGGQH  237 (360)
T ss_pred             cceEEEEEEecccHHH--HHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCccccccCcccEEEEEEECCCCCCCC
Confidence            7999999999999999  9999999999999999966443   2  22  2433  247899999999999999999999


Q ss_pred             cccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          73 VAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        73 VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      ||||+|+|+|+|+||||+|.||++|||++||+.|+++|+++|.....
T Consensus       238 VNkt~SaVrl~h~ptgi~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~  284 (360)
T TIGR00019       238 VNTTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQ  284 (360)
T ss_pred             cCceeeeEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999874

This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.

>PRK08179 prfH peptide chain release factor-like protein; Reviewed

Probab=100.00  E-value=1.9e-39  Score=266.10  Aligned_cols=116  Identities=27%  Similarity=0.362  Sum_probs=107.1

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc-----cccccCCCCCCcCCCCeEEEEeecCCCCCcccccc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV-----SNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKT   76 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~-----~~v~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNKt   76 (162)
                      |||+|++.|+|+++||  +|++|.|+|++++.||++..+.     +.|++.+.++.|+++||+++|+|||||||||||||
T Consensus        50 g~ksa~~~i~G~~a~~--~l~~~~G~~~~V~~sp~~~~~~R~~s~~~V~v~~~~~~i~~~dl~~~~~RssGpGGQ~VNkt  127 (200)
T PRK08179         50 TLRSALVSLDGDNAEA--LAESWCGTIQWICPSPYRPHHGRKNWFVGIGRFSADEEEQSDEIRFETLRSSGPGGQHVNKT  127 (200)
T ss_pred             ceEEEEEEEEccCHHH--HhhcccCeeEEEecCCCCCCCCceEEEEEEEEeCCcCccCHHHeEEEEEEccCCcccccccc
Confidence            5999999999999999  9999999999999999865443     34566677889999999999999999999999999


Q ss_pred             cceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          77 NNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        77 ~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      +|+|+|+|+||||+|+||++|||++||+.|+++|+++|.+...
T Consensus       128 ~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~  170 (200)
T PRK08179        128 DSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQ  170 (200)
T ss_pred             cceEEEEEcCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998864

>TIGR03072 release_prfH putative peptide chain release factor H

Probab=100.00  E-value=3.6e-39  Score=264.44  Aligned_cols=116  Identities=24%  Similarity=0.322  Sum_probs=106.9

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc-----cccccCCCCCCcCCCCeEEEEeecCCCCCcccccc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV-----SNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKT   76 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~-----~~v~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNKt   76 (162)
                      ||++|++.|+|+++||  +|..|.|+|++++.||+...+.     +.|++.+.++.|+++||+++|+|||||||||||||
T Consensus        49 g~ksa~~~i~G~~ay~--~l~~~~G~h~~v~~sp~r~~~~R~ts~~~V~v~~~~~~i~~~dl~~~~~RssGpGGQ~vNkt  126 (200)
T TIGR03072        49 TLRSALVSLDGEAAAA--LADRWEGTLLWICPSPYRPHHRRKNWFIGVQRFSASEEATEDEIRFETLRSSGPGGQHVNKT  126 (200)
T ss_pred             ceEEEEEEEEccCHHH--HhhcccceEEEEEcCCCCCCCCeeEEEEEEEEecCccccChhheEEEEEECCCCCccccccc
Confidence            5999999999999999  9999999999999999865443     34555667788999999999999999999999999


Q ss_pred             cceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          77 NNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        77 ~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      +|+|+|+|+||||+|+||++|||++||++|+++|+++|.+...
T Consensus       127 ~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~~l~~~~~  169 (200)
T TIGR03072       127 ESAVRATHLASGISVKVQSERSQHANKRLATLLLAVRLADLQQ  169 (200)
T ss_pred             ceeEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998864

Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.

>TIGR00020 prfB peptide chain release factor 2

Probab=100.00  E-value=6.7e-39  Score=282.20  Aligned_cols=116  Identities=32%  Similarity=0.394  Sum_probs=105.7

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--cc--ccCC---CCCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NI--DIYS---TIPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v--~~~~---~~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      ||++|++.|+|+++||  +|++|+|||||||+||+.+.+.   +  .|  -|.+   .++.|++.||+|+|+||||||||
T Consensus       173 g~ks~~~~i~G~~ay~--~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~~~~~~i~~~d~~~~~~rssG~GGQ  250 (364)
T TIGR00020       173 GIKSVTILIKGPYAYG--YLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRIDTYRASGAGGQ  250 (364)
T ss_pred             ceEEEEEEEeccCHHH--HHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCcccceecccccEEEEEeeCCCCCCc
Confidence            7999999999999999  9999999999999999976553   2  22  2433   25799999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|+|+|+|+||||+|.||++|||++||+.|+.+|+++|++...
T Consensus       251 ~VNkt~saVri~H~ptgi~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~  298 (364)
T TIGR00020       251 HVNKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEM  298 (364)
T ss_pred             cccccceEEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999874

In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.

>PRK00591 prfA peptide chain release factor 1; Validated

Probab=100.00  E-value=4.1e-38  Score=276.78  Aligned_cols=116  Identities=28%  Similarity=0.347  Sum_probs=105.1

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--ccc--cCC--CCCCcCCCCeEEEEeecCCCCCcc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NID--IYS--TIPKIDEKDIQERFVRGSGPGGQA   72 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v~--~~~--~~~~i~~~dl~i~~~RssGpGGQ~   72 (162)
                      ||++|++.|+|++|||  +|++|.|||||||+|++.+...   +  .|+  |.+  .++.|+++||+|+|+|||||||||
T Consensus       160 g~ksa~l~i~G~~ay~--~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GGQ~  237 (359)
T PRK00591        160 GYKEVIAEISGDGVYS--KLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQH  237 (359)
T ss_pred             ceeEEEEEEecccHHH--HHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCccccccCcccEEEEEEECCCCCCCC
Confidence            7999999999999999  9999999999999999965432   1  232  433  247899999999999999999999


Q ss_pred             cccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          73 VAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        73 VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      ||||+|+|+|+|+||||+|.|+++|||++||+.|+++|+++|.....
T Consensus       238 VNkt~saVrl~H~ptGi~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~  284 (359)
T PRK00591        238 VNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAER  284 (359)
T ss_pred             ccceeeeEEEEECCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875

>PRK00578 prfB peptide chain release factor 2; Validated

Probab=100.00  E-value=5.4e-38  Score=276.70  Aligned_cols=116  Identities=31%  Similarity=0.413  Sum_probs=105.6

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c----ccccCCC---CCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S----NIDIYST---IPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~----~v~~~~~---~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |+++|++.|+|+++||  +|++|+|||||||+||+.+.+.   +    .|-|.+.   ++.|+++||+++|+||||||||
T Consensus       173 g~ks~~~~i~G~~a~~--~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~~~~~~i~~~dl~~~~~rssGpGGQ  250 (367)
T PRK00578        173 GIKSATFKIKGPYAYG--YLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQ  250 (367)
T ss_pred             CeeEEEEEEeccCHHH--HHhhccceEEEEecCCCCCCCceecceeeEEecCCCCCccccccChhhEEEEEeeCCCCCCC
Confidence            7999999999999999  9999999999999999976553   1    2234433   5789999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|+|+|+|+||||+|.|+++|||++||+.|+.+|+++|.+...
T Consensus       251 ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~  298 (367)
T PRK00578        251 HVNKTDSAVRITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELEL  298 (367)
T ss_pred             cccceeeEEEEEECCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875

>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-38  Score=266.07  Aligned_cols=116  Identities=31%  Similarity=0.430  Sum_probs=106.2

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCcccccc-------ccccC---CCCCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVS-------NIDIY---STIPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~~-------~v~~~---~~~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |||||++.|+|++|||  +|+.|.||||++|+|||++....       .+.|.   ...+.|+++||+|+|+||||||||
T Consensus        48 g~ks~~~~~~g~~a~g--~~~~e~g~hrlvr~Spf~~~~~R~tsf~~v~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQ  125 (239)
T COG1186          48 GIKSATLKIKGENAYG--YLKTETGVHRLVRISPFDSNGRRHTSFASVEVFPELDISIEIEIPDDDLRIDTYRASGAGGQ  125 (239)
T ss_pred             ccceEEEEEechHHHH--HHHhhcceeEEEeecCCCcCcccccceeeeeecCCCCcccceecCccceEEEEEEcCCCCCC
Confidence            7999999999999999  99999999999999999775542       23343   347889999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|||+|+|+||||+|.||.+|||+.|++.|+..|+.+|+....
T Consensus       126 hVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a~~~l~~kL~~~~~  173 (239)
T COG1186         126 HVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALARKMLKGKLYILAQ  173 (239)
T ss_pred             ccccccccEEEEEcCCCCEecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988765

>PRK09256 hypothetical protein; Provisional

Probab=99.97  E-value=6e-31  Score=205.07  Aligned_cols=99  Identities=34%  Similarity=0.507  Sum_probs=90.8

Q ss_pred             CCCCCcCCCCeEEEEeecCCCCCcccccccceEEEEe------cC-----------------ce-eEEEEcCcCCHHHHH
Q psy2492          48 STIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTH------IP-----------------TG-IVIKCHQSRSLSENR  103 (162)
Q Consensus        48 ~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~h------~P-----------------tg-i~v~~~~~RSq~~Nk  103 (162)
                      ..++.|+++||+++|+|||||||||||||+|+|+|+|      +|                 +| |+|+|+++|||++|+
T Consensus         5 ~~~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr   84 (138)
T PRK09256          5 TRRLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNR   84 (138)
T ss_pred             CccCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHH
Confidence            3568899999999999999999999999999999996      66                 24 999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHhh-HHHHhhhh
Q psy2492         104 KTARELLVAQWDVQVNG-------EDSLNAQIRRIDEKRRAT-QEQKKRKL  146 (162)
Q Consensus       104 ~~A~~rL~~~L~~~~~~-------~ps~~a~~kRl~~Kk~~~-~K~~r~k~  146 (162)
                      ++|+++|.++|..++..       +|+++++++||+.|+++| +|++|++.
T Consensus        85 ~~al~kL~~~i~~~~~~p~~r~~tk~~~~~~~rRl~~Kk~~S~~K~~R~~~  135 (138)
T PRK09256         85 EDALERLVALIREALKPPKKRRATKPTRGSKERRLESKKQRGEVKALRGKV  135 (138)
T ss_pred             HHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHhHHHHhhCCC
Confidence            99999999999998865       589999999999999999 99988664

>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []

Probab=99.96  E-value=2e-29  Score=189.77  Aligned_cols=72  Identities=50%  Similarity=0.687  Sum_probs=68.4

Q ss_pred             CCCCCCcCCCCeEEEEeecCCCCCcccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhh
Q psy2492          47 YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQV  118 (162)
Q Consensus        47 ~~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~  118 (162)
                      ....+.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||+.|+++|+++|.++|..+.
T Consensus         3 ~~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~   74 (113)
T PF00472_consen    3 KEKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAY   74 (113)
T ss_dssp             TSSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999999999999999999999999999999999987

At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....

>KOG3429|consensus

Probab=99.87  E-value=5.6e-22  Score=158.35  Aligned_cols=96  Identities=28%  Similarity=0.369  Sum_probs=81.8

Q ss_pred             CCCCcCCCCeEEEEeecCCCCCcccccccceEEEEe-------cC------------------ceeEEEEcCcCCHHHHH
Q psy2492          49 TIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTH-------IP------------------TGIVIKCHQSRSLSENR  103 (162)
Q Consensus        49 ~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~h-------~P------------------tgi~v~~~~~RSq~~Nk  103 (162)
                      ....||-+.|+++|.||||||||||||++|+|.|++       ||                  ..|++.++.+|||+.|.
T Consensus        33 ~~g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~Ni  112 (172)
T KOG3429|consen   33 FKGKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNI  112 (172)
T ss_pred             cCCCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccH
Confidence            346789999999999999999999999999999997       44                  25999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcC---CCCHH-----------HHHHHHHHHHHhh-HHHHhh
Q psy2492         104 KTARELLVAQWDVQVNG---EDSLN-----------AQIRRIDEKRRAT-QEQKKR  144 (162)
Q Consensus       104 ~~A~~rL~~~L~~~~~~---~ps~~-----------a~~kRl~~Kk~~~-~K~~r~  144 (162)
                      ++||++|.++|..++..   +||.+           +..+||..||..+ +|.+|+
T Consensus       113 aDcleKlr~~I~~~~~~~~~~~teE~~kk~r~~~e~an~eRL~~Kk~~s~kK~~Rr  168 (172)
T KOG3429|consen  113 ADCLEKLRDIIRAAEQTPPVDPTEETIKKIRIRKEKANRERLQEKKVHSDKKTSRR  168 (172)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhc
Confidence            99999999999999875   34432           4467888888888 777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
2rsm_A	115	Solution Structure And Sirna-Mediated Knockdown Ana		4e-20
1rq0_A	342	Crystal Structure Of Peptide Releasing Factor 1 Len		3e-11
2fvo_A	333	Docking Of The Modified Rf1 X-ray Structure Into Th		3e-11
2b64_Y	354	30s Ribosomal Subunit, Trnas, Mrna And Release Fact		7e-09
2b3t_B	360	Molecular Basis For Bacterial Class 1 Release Facto		2e-08
2b9m_Y	365	30s Ribosomal Subunit, Trnas, Mrna And Release Fact		2e-07
2ihr_1	365	Rf2 Of Thermus Thermophilus Length = 365		2e-07
3f1e_X	378	Crystal Structure Of A Translation Termination Comp		2e-07
2x9r_Y	351	Structure Of The 70s Ribosome Bound To Release Fact		2e-07
2wh1_Y	351	Insights Into Translational Termination From The St		2e-07
1mi6_A	365	Docking Of The Modified Rf2 X-Ray Structure Into Th		2e-07
1gqe_A	365	Polypeptide Chain Release Factor 2 (Rf2) From Esche		2e-07
1ml5_Z	365	Structure Of The E. Coli Ribosomal Termination Comp		4e-07
1zbt_A	371	Crystal Structure Of Peptide Chain Release Factor 1		1e-04

>pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis Of The Mitochondrial Disease-Related Protein C12orf65 (Ict2) Length = 115

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 58/77 (75%)
Query: 47  YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
           Y  +  ++E +++E+FV+G GPGGQA  KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK A
Sbjct: 37  YPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIA 96
Query: 107 RELLVAQWDVQVNGEDS 123
           R++L  + DV  N   S
Sbjct: 97  RKVLQEKVDVFYNSGPS 113

>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 3   IKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQER- 61
           I+ V++ ++ +N  GI   ES V   + +        + ++    + +P+I+EKDI+ R 
Sbjct: 136 IREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRP 195
Query: 62  ------FVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
                   R SG GGQ V KT + V +TH+PTGIV+ C   RS  +N++TA  +L A
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRA 252

>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 3   IKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQER- 61
           I+ V++ ++ +N  GI   ES V   + +        + ++    + +P+I+EKDI+ R 
Sbjct: 136 IREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRP 195
Query: 62  ------FVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
                   R SG GGQ V KT + V +TH+PTGIV+ C   RS  +N++TA  +L A
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRA 252

>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Query: 48  STIPKIDEKD-------IQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLS 100
           + +PK +E+D       I+   +R SGPGGQ V  T++ V + H+PTGI++ C  SRS  
Sbjct: 200 AVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQI 259
Query: 101 ENRKTARELL 110
           +NR+ A  +L
Sbjct: 260 KNREKALMIL 269

>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 48  STIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAR 107
           + +P ++  D++    R SG GGQ V  T++ + +TH+PTGIV++C   RS  +N+  A 
Sbjct: 212 AELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAL 271
Query: 108 ELLVA 112
            +L A
Sbjct: 272 SVLGA 276

>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 63  VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
           +R SGPGGQ V  T++ V + H+PTGI + C  +RS  +N++ A ++L A
Sbjct: 232 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKA 281

>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 63  VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
           +R SGPGGQ V  T++ V + H+PTGI + C  +RS  +N++ A ++L A
Sbjct: 232 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKA 281

>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 63  VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
           +R SGPGGQ V  T++ V + H+PTGI + C  +RS  +N++ A ++L A
Sbjct: 245 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKA 294

>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 63  VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
           +R SGPGGQ V  T++ V + H+PTGI + C  +RS  +N++ A ++L A
Sbjct: 227 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKA 276

>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 63  VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
           +R SGPGGQ V  T++ V + H+PTGI + C  +RS  +N++ A ++L A
Sbjct: 227 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKA 276

>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 43  NIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 102
           +IDI     +I+  D++    R SG GGQ V +T + V +THIPTGIV +C   RS  +N
Sbjct: 229 DIDI-----EINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKN 283
Query: 103 RKTARELLVAQ 113
           +  A + + A+
Sbjct: 284 KDQAMKQMKAK 294

>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 43  NIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 102
           +IDI     +I+  D++    R SG GGQ V +T + V +THIPTGIV +C   RS  +N
Sbjct: 229 DIDI-----EINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKN 283
Query: 103 RKTA 106
           +  A
Sbjct: 284 KDQA 287

>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 43  NIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 102
           +IDI     +I+  D++    R SG GGQ V +T + V +THIPTGIV +C   RS  +N
Sbjct: 229 DIDI-----EINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKN 283
Query: 103 RKTARELLVAQ 113
           +  A + + A+
Sbjct: 284 KDQAMKQMKAK 294

>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 53  IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
           ID KD++      SG GGQ V K    V + H+PT I ++  + R+  +NR  A +++ A
Sbjct: 230 IDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEXQEERTQQKNRDKAXKIIRA 289

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
2rsm_A	115	Probable peptide chain release factor C12ORF65 HO	9e-25
1gqe_A	365	Release factor 2, RF2; protein synthesis, ribosome	2e-13
2b3t_B	360	RF-1, peptide chain release factor 1; translation	4e-13
1zbt_A	371	RF-1, peptide chain release factor 1; peptide chai	7e-13
3d5a_X	354	RF1, peptide chain release factor 1; ribosome, rib	9e-13
1rq0_A	342	RF-1, peptide chain release factor 1; X-RAY, cryst	1e-12
2ihr_1	365	Peptide chain release factor 2; mixed alpha-beta,	1e-12
2jva_A	108	Peptidyl-tRNA hydrolase domain protein; GFT hydrol	3e-10
4dh9_Y	140	YAEJ; ribosome, YAEJ, ribosome stalling, ribosome	2e-09
1j26_A	112	Immature colon carcinoma transcript 1; peptide cha	2e-08

>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115

 Score = 91.3 bits (227), Expect = 9e-25
 Identities = 39/73 (53%), Positives = 56/73 (76%)

Query: 51  PKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
             ++E +++E+FV+G GPGGQA  KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK AR++L
Sbjct: 41  LPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVL 100

Query: 111 VAQWDVQVNGEDS 123
             + DV  N   S
Sbjct: 101 QEKVDVFYNSGPS 113

>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 43  NIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 102
           +IDI     +I+  D++    R SG GGQ V +T + V +THIPTGIV +C   RS  +N
Sbjct: 229 DIDI-----EINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKN 283

Query: 103 RKTARELLVAQ 113
           +  A + + A+
Sbjct: 284 KDQAMKQMKAK 294

>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 50  IPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAREL 109
           +P ++  D++    R SG GGQ V  T++ + +TH+PTGIV++C   RS  +N+  A  +
Sbjct: 214 LPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSV 273

Query: 110 LVAQ-WDVQVNGEDSLNAQIRR 130
           L A+    ++       A  RR
Sbjct: 274 LGARIHAAEMAKRQQAEASTRR 295

>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371

 Score = 63.8 bits (156), Expect = 7e-13
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
           +ID KD++      SG GGQ V K    V + H+PT I ++  + R+  +NR  A +++ 
Sbjct: 229 EIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIR 288

Query: 112 AQ-WDVQVNGEDSLNAQIRR 130
           A+  D             R+
Sbjct: 289 ARVADHFAQIAQDEQDAERK 308

>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354

 Score = 63.3 bits (155), Expect = 9e-13
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
            ++  +I+   +R SGPGGQ V  T++ V + H+PTGI++ C  SRS  +NR+ A  +L 
Sbjct: 211 ALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILR 270

Query: 112 AQ-WDVQVNGEDSLNAQIRR 130
           ++  +++   E     + R 
Sbjct: 271 SRLLEMKRAEEAERLRKTRL 290

>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
           +I  +D++    R SG GGQ V KT + V +TH+PTGIV+ C   RS  +N++TA  +L 
Sbjct: 192 EIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILR 251

Query: 112 AQ-WDVQVNGEDSLNAQIRR 130
           A+ + +Q   ++   +Q R+
Sbjct: 252 ARLYQLQKEQKEREISQKRK 271

>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 43  NIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 102
            +++      +  ++++   +R SGPGGQ V  T++ V + H+PTGI + C  +RS  +N
Sbjct: 217 EVEV-----VLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKN 271

Query: 103 RKTARELLVA 112
           ++ A ++L A
Sbjct: 272 KELALKILKA 281

>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108

 Score = 53.4 bits (128), Expect = 3e-10
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 24/85 (28%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTG----------------------- 88
            + + +I+   +R  G GGQ V K ++ + L                             
Sbjct: 9   HLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDG 68

Query: 89  -IVIKCHQSRSLSENRKTARELLVA 112
            IV+K  Q R+  +NR  A   L  
Sbjct: 69  VIVLKAQQYRTQEQNRADALLRLSE 93

>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 32/137 (23%), Positives = 46/137 (33%), Gaps = 45/137 (32%)

Query: 44  IDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT-------------------- 83
           I I   +  I + +++   +R  G GGQ V KT+  + L                     
Sbjct: 2   IVISRHV-AIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAAS 60

Query: 84  ----HIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQ 139
                    IVIK  + RS   NR+ A   LVA                      +  T 
Sbjct: 61  HHLISSDGVIVIKAQEYRSQELNREAALARLVA--------------------MIKELTT 100

Query: 140 EQKKRKLDALKKAWKER 156
           E+K R+     +A KER
Sbjct: 101 EKKARRPTRPTRASKER 117

>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112

 Score = 48.6 bits (115), Expect = 2e-08
 Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 25/85 (29%)

Query: 53  IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTG------------------------ 88
           I    +   + R SGPGGQ V K N+   +                              
Sbjct: 17  IPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAG 76

Query: 89  -IVIKCHQSRSLSENRKTARELLVA 112
            +V+    SR    N     + +  
Sbjct: 77  ELVLTSESSRYQFRNLAECLQKIRD 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3d5a_X	354	RF1, peptide chain release factor 1; ribosome, rib	100.0
2b3t_B	360	RF-1, peptide chain release factor 1; translation	100.0
1gqe_A	365	Release factor 2, RF2; protein synthesis, ribosome	100.0
1zbt_A	371	RF-1, peptide chain release factor 1; peptide chai	100.0
1rq0_A	342	RF-1, peptide chain release factor 1; X-RAY, cryst	100.0
2ihr_1	365	Peptide chain release factor 2; mixed alpha-beta,	100.0
2rsm_A	115	Probable peptide chain release factor C12ORF65 HO	100.0
4dh9_Y	140	YAEJ; ribosome, YAEJ, ribosome stalling, ribosome	100.0
2jva_A	108	Peptidyl-tRNA hydrolase domain protein; GFT hydrol	99.95
1j26_A	112	Immature colon carcinoma transcript 1; peptide cha	99.95

>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V

Probab=100.00  E-value=7.3e-41  Score=292.32  Aligned_cols=116  Identities=26%  Similarity=0.343  Sum_probs=105.6

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--cc--ccC--CCCCCcCCCCeEEEEeecCCCCCcc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NI--DIY--STIPKIDEKDIQERFVRGSGPGGQA   72 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v--~~~--~~~~~i~~~dl~i~~~RssGpGGQ~   72 (162)
                      |||+|++.|+|++|||  +|++|+|||||||+|||++.+.   +  .|  -|.  ..++.|+++||+|+|+|||||||||
T Consensus       154 G~k~v~~~i~G~~ayg--~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~  231 (354)
T 3d5a_X          154 GFSKVVFEVRGPGAYG--TFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQG  231 (354)
T ss_dssp             SEEEEEEEEESTTHHH--HHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHH
T ss_pred             ccEEEEEEEECccHHH--HHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCcc
Confidence            7999999999999999  9999999999999999976543   2  22  243  2357799999999999999999999


Q ss_pred             cccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          73 VAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        73 VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      ||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|..+..
T Consensus       232 VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~  278 (354)
T 3d5a_X          232 VNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKR  278 (354)
T ss_dssp             HHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875

>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1

Probab=100.00  E-value=6.3e-41  Score=293.26  Aligned_cols=117  Identities=26%  Similarity=0.331  Sum_probs=106.3

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--c--cccCCCC---CCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--N--IDIYSTI---PKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~--v~~~~~~---~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |||+|++.|+|++|||  +|++|+|||||||+||+++.+.   +  .  |-|...+   +.|+++||+|+|+||||||||
T Consensus       158 G~k~~~~~i~G~~ayg--~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ  235 (360)
T 2b3t_B          158 GYKEIIAKISGDGVYG--RLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQ  235 (360)
T ss_dssp             SEEEEEEEECSSSCHH--HHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTT
T ss_pred             CceEEEEEEEcccHHH--HHHhccCeEEEEecCCCcccCcCCccceEEEEecCcccccccccChhheEEeeecCCCCCCC
Confidence            7999999999999999  9999999999999999976543   2  2  3344333   669999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNG  120 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~  120 (162)
                      |||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|..+...
T Consensus       236 ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~  284 (360)
T 2b3t_B          236 HVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMA  284 (360)
T ss_dssp             TCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTT
T ss_pred             ccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998774

>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*

Probab=100.00  E-value=6.4e-41  Score=293.74  Aligned_cols=116  Identities=28%  Similarity=0.355  Sum_probs=105.5

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c----ccccCC---CCCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S----NIDIYS---TIPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~----~v~~~~---~~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |||+|++.|+|++|||  +|++|+|||||||+|||++.+.   +    .|-|..   .++.|+++||+|+|+||||||||
T Consensus       175 G~Ks~~~~I~G~~ayg--~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ  252 (365)
T 1gqe_A          175 GIKSVTIKISGDYAYG--WLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ  252 (365)
T ss_dssp             SEEEEEEEEESTTHHH--HHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCC
T ss_pred             ceeEEEEEEECcCHHH--HhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCC
Confidence            7999999999999999  9999999999999999976553   2    222432   35789999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|.+...
T Consensus       253 ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~  300 (365)
T 1gqe_A          253 HVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEM  300 (365)
T ss_dssp             STTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998764

>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}

Probab=100.00  E-value=8.9e-41  Score=293.18  Aligned_cols=116  Identities=23%  Similarity=0.257  Sum_probs=96.4

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--cc--ccCC--CCCCcCCCCeEEEEeecCCCCCcc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NI--DIYS--TIPKIDEKDIQERFVRGSGPGGQA   72 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v--~~~~--~~~~i~~~dl~i~~~RssGpGGQ~   72 (162)
                      |||+|++.|+|++|||  +|++|+|||||||+|||++.+.   +  .|  -|..  .++.|+++||+|+|+|||||||||
T Consensus       172 G~ksv~~~I~G~~ayg--~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~ev~i~I~~~dl~i~~~RssGpGGQ~  249 (371)
T 1zbt_A          172 GLKEVVAMVSGQSVYS--KLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQN  249 (371)
T ss_dssp             CEEEEEEEEESTTHHH--HHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECC-------
T ss_pred             CceEEEEEEECccHHH--HHhhccCeEEEEeecCCCCCCcccccceEEEEeccccccccccCcCcEEEEEecCCCCCCCc
Confidence            7999999999999999  9999999999999999976543   2  22  2432  346799999999999999999999


Q ss_pred             cccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          73 VAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        73 VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      ||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|..+..
T Consensus       250 VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~  296 (371)
T 1zbt_A          250 VNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFA  296 (371)
T ss_dssp             --CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998874

>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A

Probab=100.00  E-value=9.3e-41  Score=290.52  Aligned_cols=116  Identities=30%  Similarity=0.375  Sum_probs=101.2

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--cc--ccCC--CCCCcCCCCeEEEEeecCCCCCcc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NI--DIYS--TIPKIDEKDIQERFVRGSGPGGQA   72 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v--~~~~--~~~~i~~~dl~i~~~RssGpGGQ~   72 (162)
                      |||+|++.|+|++|||  +|++|+|||||||+||+++.+.   +  .|  -|..  .++.|+++||+|+|+|||||||||
T Consensus       135 G~ks~~~~I~G~~ayg--~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~~i~i~~~dl~i~~~RssGpGGQ~  212 (342)
T 1rq0_A          135 GIREVVFFVKGKNAYG--ILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQY  212 (342)
T ss_dssp             CEEEEEEEEESTTHHH--HHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----C
T ss_pred             ccEEEEEEEECcCHHH--HHhhccCeEEEEecCCcccCCCCcccceEEEEeccccccccccChhHeEEEeecCCCCCCcc
Confidence            7999999999999999  9999999999999999976543   2  22  2332  346799999999999999999999


Q ss_pred             cccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          73 VAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        73 VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      ||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|..+..
T Consensus       213 VNKt~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~  259 (342)
T 1rq0_A          213 VNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQK  259 (342)
T ss_dssp             CSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998864

>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y

Probab=100.00  E-value=1.9e-40  Score=290.71  Aligned_cols=116  Identities=26%  Similarity=0.392  Sum_probs=105.5

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c----ccccC---CCCCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S----NIDIY---STIPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~----~v~~~---~~~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |||+|++.|+|++|||  +|++|+|||||||+|||++.+.   +    .|-|.   ..++.|+++||+|+|+||||||||
T Consensus       163 G~ks~~~~I~G~~ayg--~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ  240 (365)
T 2ihr_1          163 GIDYAQILVKGENAYG--LLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQ  240 (365)
T ss_dssp             SEEEEEEEEESTTHHH--HHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCC
T ss_pred             CeEEEEEEEEccCHHH--hhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCcccccccCccceEEEEeecCCCCCc
Confidence            7999999999999999  9999999999999999976543   2    22232   245789999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|++...
T Consensus       241 ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~  288 (365)
T 2ihr_1          241 GVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELER  288 (365)
T ss_dssp             SGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998764

>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}

Probab=100.00  E-value=4.9e-36  Score=226.13  Aligned_cols=96  Identities=43%  Similarity=0.724  Sum_probs=86.6

Q ss_pred             eEEeecCCCcccccc----cccc---CCCCCCcCCCCeEEEEeecCCCCCcccccccceEEEEecCceeEEEEcCcCCHH
Q psy2492          28 TRELRNDGYHRNLVS----NIDI---YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLS  100 (162)
Q Consensus        28 HR~~R~~~~~~~~~~----~v~~---~~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~  100 (162)
                      |||||+|++.+..++    .+.|   .+..+.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+||++|||+
T Consensus        11 ~rvqrvp~tes~gts~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~   90 (115)
T 2rsm_A           11 LRLQEKPALLFPGMAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVD   90 (115)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHH
T ss_pred             eeEEecCcccCCccceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHH
Confidence            899999999766543    2323   355688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCC
Q psy2492         101 ENRKTARELLVAQWDVQVNGEDS  123 (162)
Q Consensus       101 ~Nk~~A~~rL~~~L~~~~~~~ps  123 (162)
                      +||+.|+++|+++|+++++++++
T Consensus        91 ~Nr~~A~~~L~~kL~e~~~~~~s  113 (115)
T 2rsm_A           91 QNRKIARKVLQEKVDVFYNSGPS  113 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHhccccC
Confidence            99999999999999999988765

>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A

Probab=100.00  E-value=8.2e-34  Score=220.58  Aligned_cols=102  Identities=27%  Similarity=0.358  Sum_probs=92.4

Q ss_pred             CCCCCCcCCCCeEEEEeecCCCCCcccccccceEEEE------ecCc------------------eeEEEEcCcCCHHHH
Q psy2492          47 YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT------HIPT------------------GIVIKCHQSRSLSEN  102 (162)
Q Consensus        47 ~~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~------h~Pt------------------gi~v~~~~~RSq~~N  102 (162)
                      ++..+.|+++||+|+|+|||||||||||||+|+|+|+      |+|+                  +|+|+||++|||++|
T Consensus         4 i~~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~N   83 (140)
T 4dh9_Y            4 ISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELN   83 (140)
T ss_dssp             CCSSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHH
T ss_pred             ccCCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHH
Confidence            3467899999999999999999999999999999999      6997                  599999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHhh-HHHHhhhhHH
Q psy2492         103 RKTARELLVAQWDVQVNG-------EDSLNAQIRRIDEKRRAT-QEQKKRKLDA  148 (162)
Q Consensus       103 k~~A~~rL~~~L~~~~~~-------~ps~~a~~kRl~~Kk~~~-~K~~r~k~~~  148 (162)
                      +++|+++|.++|.+++.+       +|+++++++||+.|++++ +|++|+++++
T Consensus        84 r~~A~~rL~~~l~~a~~~pk~R~~tkpt~~s~~rRl~~Kk~rs~~K~~R~k~~~  137 (140)
T 4dh9_Y           84 REAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRS  137 (140)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCCCCCCSSTTTHHHHHHHHHHHHHTSCCC----
T ss_pred             HHHHHHHHHHHHHHhccCCCCCcCCCCcHHHHHHHHHHHHHHhHHhhccCCCCC
Confidence            999999999999999886       589999999999999999 9999988764

>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}

Probab=99.95  E-value=8.3e-29  Score=185.12  Aligned_cols=74  Identities=30%  Similarity=0.390  Sum_probs=69.8

Q ss_pred             CCCCCcCCCCeEEEEeecCCCCCcccccccceEEEEe------cC-----------------ce-eEEEEcCcCCHHHHH
Q psy2492          48 STIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTH------IP-----------------TG-IVIKCHQSRSLSENR  103 (162)
Q Consensus        48 ~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~h------~P-----------------tg-i~v~~~~~RSq~~Nk  103 (162)
                      +..+.|+++||+|+|+|||||||||||||+|+|+|+|      +|                 +| |+|+||++|||++|+
T Consensus         5 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr   84 (108)
T 2jva_A            5 SNNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNR   84 (108)
T ss_dssp             SSSCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHH
T ss_pred             ccccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHH
Confidence            4568899999999999999999999999999999999      88                 88 999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCC
Q psy2492         104 KTARELLVAQWDVQVNGE  121 (162)
Q Consensus       104 ~~A~~rL~~~L~~~~~~~  121 (162)
                      ++|+++|.++|.++..++
T Consensus        85 ~~Al~rL~~~l~~a~~~~  102 (108)
T 2jva_A           85 ADALLRLSELIVNAAKLE  102 (108)
T ss_dssp             HHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHccCc
Confidence            999999999999988653

>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1

Probab=99.95  E-value=2.2e-28  Score=183.85  Aligned_cols=73  Identities=22%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             CCCCCcCCCCeEEEEeecCCCCCcccccccceEEEE-ecCce------------------------eEEEEcCcCCHHHH
Q psy2492          48 STIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT-HIPTG------------------------IVIKCHQSRSLSEN  102 (162)
Q Consensus        48 ~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~-h~Ptg------------------------i~v~~~~~RSq~~N  102 (162)
                      ...+.|+++||+|+|+|||||||||||||+|+|+|+ |+|++                        |+|+||++|||++|
T Consensus        12 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N   91 (112)
T 1j26_A           12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRN   91 (112)
T ss_dssp             SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHH
T ss_pred             ceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHH
Confidence            345789999999999999999999999999999998 99997                        99999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q psy2492         103 RKTARELLVAQWDVQVNG  120 (162)
Q Consensus       103 k~~A~~rL~~~L~~~~~~  120 (162)
                      +++|+++|.++|.+++.+
T Consensus        92 r~~Al~rL~~~l~~a~~~  109 (112)
T 1j26_A           92 LAECLQKIRDMIAEASGP  109 (112)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhhcC
Confidence            999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1j26a_	112	d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [	2e-13
d2b3tb1	344	e.38.1.1 (B:7-354) Peptide chain release factor 1,	3e-09
d1rq0a_	333	e.38.1.1 (A:) Peptide chain release factor 1, RF1	9e-08
d1gqea_	362	e.38.1.1 (A:) Polypeptide chain release factor 2 (	1e-06

>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: Peptidyl-tRNA hydrolase domain-like
family: Peptidyl-tRNA hydrolase domain
domain: Ict1 protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.7 bits (147), Expect = 2e-13
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 25/86 (29%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHI-------------------------P 86
            I    +   + R SGPGGQ V K N+   +                             
Sbjct: 16  YIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKA 75

Query: 87  TGIVIKCHQSRSLSENRKTARELLVA 112
             +V+    SR    N     + +  
Sbjct: 76  GELVLTSESSRYQFRNLAECLQKIRD 101

>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Escherichia coli [TaxId: 562]

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 19/139 (13%)

Query: 23  SQVTITRELRNDGYHRNLVSNIDIYSTIPK-----IDEKDIQERFVRGSGPGGQAVAKTN 77
            +V       + G        + +   +P      ++  D++    R SG GGQ V  T+
Sbjct: 172 HRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTD 231

Query: 78  NCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRA 137
           + + +TH+PTGIV++C   RS  +N+  A                 L A+I   +  +R 
Sbjct: 232 SAIRITHLPTGIVVECQDERSQHKNKAKAL--------------SVLGARIHAAEMAKRQ 277

Query: 138 TQEQKKRKLDALKKAWKER 156
             E   R+         +R
Sbjct: 278 QAEASTRRNLLGSGDRSDR 296

>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.8 bits (113), Expect = 9e-08
 Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 53  IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
           I  +D++    R SG GGQ V KT + V +TH+PTGIV+ C   RS  +N++TA  +L A
Sbjct: 193 IRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRA 252

Query: 113 Q-WDVQVNGEDSLNAQIRRID 132
           + + +Q   ++   +Q R+  
Sbjct: 253 RLYQLQKEQKEREISQKRKSQ 273

>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 52  KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
           +I+  D++    R SG GGQ V +T + V +THIPTGIV +C   RS  +N+  A + + 
Sbjct: 230 EINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMK 289

Query: 112 AQ-WDVQVNGEDSLNAQIRR 130
           A+ ++V++  +++    +  
Sbjct: 290 AKLYEVEMQKKNAEKQAMED 309

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1gqea_	362	Polypeptide chain release factor 2 (RF2) {Escheric	100.0
d2b3tb1	344	Peptide chain release factor 1, RF1 {Escherichia c	100.0
d1rq0a_	333	Peptide chain release factor 1, RF1 {Thermotoga ma	100.0
d1j26a_	112	Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}	99.9

>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-43  Score=308.79  Aligned_cols=116  Identities=28%  Similarity=0.359  Sum_probs=105.7

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c----ccccC---CCCCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S----NIDIY---STIPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~----~v~~~---~~~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |||+|++.|+|+||||  +|++|+|||||||+|||++.+.   +    .|-|.   ..++.|+++||+|+|+||||||||
T Consensus       172 G~K~v~~~I~G~~ayg--~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ  249 (362)
T d1gqea_         172 GIKSVTIKISGDYAYG--WLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ  249 (362)
T ss_dssp             SEEEEEEEEESTTHHH--HHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCC
T ss_pred             ceeEEEEEEECccHHH--HHHHhcCceeEEEecccCCCceEEEEEEEEEEeecCCCccceecChHHeEEEEeecCCCCcc
Confidence            7999999999999999  9999999999999999976553   2    23343   346889999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      |||||+|||||+|+||||+|+||++|||++||+.||..|+++|++...
T Consensus       250 ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~  297 (362)
T d1gqea_         250 HVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEM  297 (362)
T ss_dssp             STTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhceeEEEecCchhHHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988763

>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-42  Score=299.95  Aligned_cols=117  Identities=26%  Similarity=0.359  Sum_probs=105.7

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--c--cccC---CCCCCcCCCCeEEEEeecCCCCCc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--N--IDIY---STIPKIDEKDIQERFVRGSGPGGQ   71 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~--v~~~---~~~~~i~~~dl~i~~~RssGpGGQ   71 (162)
                      |||+|++.|+|+||||  +|++|+|||||||+||+++.+.   +  +  |-|.   ...+.|+++||+|+|+||||||||
T Consensus       148 Gik~~~~~i~G~~ay~--~lk~E~GvHRvqRip~~~~~~r~hts~~~v~v~p~~~~~~~~~i~~~dl~i~~~rssg~GGQ  225 (344)
T d2b3tb1         148 GYKEIIAKISGDGVYG--RLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQ  225 (344)
T ss_dssp             SEEEEEEEECSSSCHH--HHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTT
T ss_pred             ceeEEEEEEEcCcccc--eeeEeecceEEEeecccccccccccceeeEeeecccccccccccCcccceEEEecCCCcccc
Confidence            8999999999999999  9999999999999999976442   2  2  2232   234689999999999999999999


Q ss_pred             ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy2492          72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNG  120 (162)
Q Consensus        72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~  120 (162)
                      |||||+|||||+|+||||+|.||++|||++||+.||..|+++|++....
T Consensus       226 ~vnkt~sAVRi~H~ptGi~v~~q~eRSq~~Nk~~A~~~L~~kl~~~~~~  274 (344)
T d2b3tb1         226 HVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMA  274 (344)
T ss_dssp             TCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTT
T ss_pred             chhhhhceeEEEEcCCceEEEccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.1e-42  Score=297.90  Aligned_cols=116  Identities=30%  Similarity=0.379  Sum_probs=101.5

Q ss_pred             ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c----ccccC--CCCCCcCCCCeEEEEeecCCCCCcc
Q psy2492           2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S----NIDIY--STIPKIDEKDIQERFVRGSGPGGQA   72 (162)
Q Consensus         2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~----~v~~~--~~~~~i~~~dl~i~~~RssGpGGQ~   72 (162)
                      |||+|++.|.|++|||  +|++|+|||||||+||+++.+.   +    .|.|.  ..++.|+++||+|+|+|||||||||
T Consensus       135 GiK~v~~~I~G~~ayg--~Lk~E~GvHRv~Rvp~~~~~~r~hTs~~~V~v~p~~~~~~v~i~~~dl~i~~~RssG~GGQ~  212 (333)
T d1rq0a_         135 GIREVVFFVKGKNAYG--ILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQY  212 (333)
T ss_dssp             CEEEEEEEEESTTHHH--HHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----C
T ss_pred             ccchhheeeccccchh--hhcccccceeEEEecccCCCCceEEEEEEEEEecccccccccccccceeEEeecCCccccch
Confidence            8999999999999999  9999999999999999976443   2    22333  3468899999999999999999999


Q ss_pred             cccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492          73 VAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN  119 (162)
Q Consensus        73 VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~  119 (162)
                      ||||+|||||+|+||||+|.||++|||++||+.||..|+++|++...
T Consensus       213 VNkt~sAVRitH~PTGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~  259 (333)
T d1rq0a_         213 VNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQK  259 (333)
T ss_dssp             CSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhheeEEEEcCCccEEEcccccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998764

>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: Peptidyl-tRNA hydrolase domain-like
family: Peptidyl-tRNA hydrolase domain
domain: Ict1 protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4e-24  Score=158.80  Aligned_cols=72  Identities=21%  Similarity=0.216  Sum_probs=65.3

Q ss_pred             CCCCcCCCCeEEEEeecCCCCCcccccccceEEEEec-------C------------------ceeEEEEcCcCCHHHHH
Q psy2492          49 TIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHI-------P------------------TGIVIKCHQSRSLSENR  103 (162)
Q Consensus        49 ~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~h~-------P------------------tgi~v~~~~~RSq~~Nk  103 (162)
                      ....||.++|+|+|+|||||||||||||+|+|.|++.       |                  ..|+|+|+++|||++|+
T Consensus        13 ~~~~Ip~~~i~~~f~RSsGPGGQ~VNKv~TkV~Lr~~v~~s~~l~~~~~~~l~~~~~~~i~~~g~l~I~s~~~RsQ~~Nr   92 (112)
T d1j26a_          13 ASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNL   92 (112)
T ss_dssp             SCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHH
T ss_pred             hcCccCHHHeEEEEEEcCCCCCCccceeccEEEEEEeccccccCCHHHHHHHHHHhhhcccCCCeEEEEEcccCCHHHHH
Confidence            3468999999999999999999999999999999862       2                  25999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcC
Q psy2492         104 KTARELLVAQWDVQVNG  120 (162)
Q Consensus       104 ~~A~~rL~~~L~~~~~~  120 (162)
                      ++|+++|.++|.++..|
T Consensus        93 ~~a~~kL~~li~~A~kP  109 (112)
T d1j26a_          93 AECLQKIRDMIAEASGP  109 (112)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            99999999999998753