Psyllid ID: psy2533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680----
Protein Sequence
MKSHSVRDMLRQEAKLSEMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNRPPPGPERGDRPASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRAYKNMNKFKCYKTPKDNELCLCEDIFQQHQAKLIDCDSEDAKAVSSYTNNTESEQVKENVDVDTASSSMSECCCNHSDNTTSTQSSDNNSEPKQEVHQSTSVDVVETNKDKLTLEEREKALKELDEIINSIKITRNIREFGSLDLSTSDRNKDFKKSRFLSSMLELNFSEMKIDDKDDNKFNNNNMDPDNRELNNNISNNESEEPAEFTVGKVNLGLNSILRQSTVVKLDLRMFKKDPRQRRLAQQQQEKMLSNKTSQVPEKLSFKEKMKMFAMETGEDGTPRDKVKISRAQRDIDNLGTPTSTNINTSNESASNVSVNNLNSKFKTSAAITSN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEcccccccccEEEEEEccccHHHHccccccccEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccEEEEEcccccccccHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccccccccHHHcccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEcccccccccEEEEEEccccHHHHHccccccEEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEcccccccccccccccEEEcccccHHccccccccccEEEEEcccccccccHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccHHHccccccccccccccHHHcccccccccccccccccccccHHccccccccccccccccccHcccHHHHHcccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEccccccHHHccccHHHHccccccccEEEEcEEEccHHHHHccccEEEEccEEEcccHHHHHHHHHHHHHHcccccccccHcccHHHHHHHHHHHHccccccccHccccHHHHHHHHccccccccccccccccccEEEccccccccccEEEccc
Coil and Loop (DISEMBL)
MKSHSVRDMLRQEAKLSEMSEEEIHRNQEIHRNQQEmhngyvdksptqlhkgystqvlnrpppgpergdrpasaylpnypgtppnrldssmkshSVRDMLRQEAKLSemseegagqdrLGIYIKSVVKggaadangrlqagdqllkvdgqslvGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLAtllsqpspvmtrgqvktYESTISVQQRKerssqnlhdmnngvggshhpapgpgsgmnhhpvvsrqastpslpqaspypapapapadperfYQNLSVYRNQngrlqagdqllkvdgqslvGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLatllsqpspvmTRAYKNmnkfkcyktpkdnelcLCEDIFQQHQAKlidcdsedaKAVSSYTnnteseqvkenvdvdtasssmsecccnhsdnttstqssdnnsepkqevhqsTSVDVVETNKDKLTLEEREKALKELDEIINSIKITRNIrefgsldlstsdrnkdfkKSRFLSSMLELNfsemkiddkddnkfnnnnmdpdnrelnnnisnneseepaeftvgkvnlGLNSILRQSTVVKLDlrmfkkdprqRRLAQQQQEKMLsnktsqvpeklSFKEKMKMFAMetgedgtprdkvKISRAqrdidnlgtptstnintsnesasnvsvnnlnskfktsaaitsn
Flexible Loop (DISEMBL)
mkshsvrdmLRQEAKLSEMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNRPPPGPERGDRPASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQEAKLSemseegagqdrLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATllsqpspvmTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRAYKNMNKFKCYKTPKDNELCLCEDIFQQHQAKLIDCDSEDAKAVSsytnnteseqvkeNVDVDTASSSMSECCCNHSDNttstqssdnnsepkqevhqstsvdvvetnkdkltleeREKALKELDeiinsikitrnirefgsldlstsdrnkdfkksRFLSSMLELNFsemkiddkddnkfnnnnmdpdnRELNNNISNNESEEPAEFTVGKVNLGLNSILRQSTVVKLDLRMFKKDPRQRRLAQqqqekmlsnktsqvpeklsFKEKMKMFAmetgedgtprdkvkisraqrdidnlgtptstnintsnesasnvsvnnlnskfktsaaitsn
Low Complexity Region (SEG)
MKSHSVRDMLRQEAKLSEMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNrpppgpergdrpASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNgvggshhpapgpgsgMNHHPVVSRQASTpslpqaspypapapapadpERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRAYKNMNKFKCYKTPKDNELCLCEDIFQQHQAKLIDCDSEDAKAVSSYTNNTESEQVKENVDVDTASSSMSECCCNHsdnttstqssdnnsEPKQEVHQSTSVDVVETNKDKLTLEEREKALKELDEIINSIKITRNIREFGSLDLSTSDRNKDFKKSRFLSSMLELNFSEMkiddkddnkfnnnnmdpdnrelnnnisnneseePAEFTVGKVNLGLNSILRQSTVVKLDLRMFKKDPRQRRLAQQQQEKMLSNKTSQVPEKLSFKEKMKMFAMETGEDGTPRDKVKISRAQRDIDNLGTPTSTNIntsnesasnvsvnnlnsKFKTSAAITSN
Disordered region (IsUnstruct)
**********************************************************************************************************************LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLS****************************************************************************************NLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRAYKNMNKFKCYKTPKDNELCLCEDIFQQHQAKLIDC***************************************************************************************LDEIINSIKITRNIREFG******************************************************************FTVGKVNLGLNSILRQSTVVKLDLRM*****************************************************************************************************
Disordered Region (DISOPRED)
**SHSVR*M**QE******************************************************************************************AKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG****************************************************************************S******************RFYQNLSVYRN*NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************KFKT*******
Disordered Region (DISEMBL)
***********QEAKLSEMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNRPPPGPERGDRPASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQEA**********GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTY*************SQNLHDMNNGVGGSHHPAPGP*******************************PADPERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRAYKNMNKFKCYKTPKDNELCLCEDIFQQHQAKLIDCDS*******************************************************************ETNKDKLTLEEREKALKELDEIINSIKITRNIREFGSLDLSTSDRNKDFKKSRFLSSMLELNFSEMKIDDKDDNKFNNNNMDPDNRELNNNISNNESEEPAEFTVGKVNLGLNSILRQSTVVKLDLRMFKK***********************PEKLSFKEKMKMFAME*********KVKISRAQRDIDNLGTPTSTNINTSNESASNVSVNNLNSKFK********
Disordered Region (DISPRO)
**************************************************************************************LDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG******************************************************P*PGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG***********************************************HQAKLIDCDSE*****************************************************************************R*********IINSIKITR****FGSLDLS*******FKKSRFLSSMLELNFSEMKIDDKDDNKFNNNNMDPDNRELNNNISNNESEEPAEFTVGKVNLGLNSILRQSTVVKLDLRMFKKDPRQRRLAQQQQEKMLSNKTSQVPEKLSFKEKMKMFAMETGE********************GTPTS*N******SASNVS*N**NSKFKT*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSHSVRDMLRQEAKLSEMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNRPPPGPERGDRPASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRAYKNMNKFKCYKTPKDNELCLCEDIFQQHQAKLIDCDSEDAKAVSSYTNNTESEQVKENVDVDTASSSMSECCCNHSDNTTSTQSSDNNSEPKQEVHQSTSVDVVETNKDKLTLEEREKALKELDEIINSIKITRNIREFGSLDLSTSDRNKDFKKSRFLSSMLELNFSEMKIDDKDDNKFNNNNMDPDNRELNNNISNNESEEPAEFTVGKVNLGLNSILRQSTVVKLDLRMFKKDPRQRRLAQQQQEKMLSNKTSQVPEKLSFKEKMKMFAMETGEDGTPRDKVKISRAQRDIDNLGTPTSTNINTSNESASNVSVNNLNSKFKTSAAITSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	684	2.2.26 [Sep-21-2011]
O35889	1829	Afadin OS=Rattus norvegic	yes	N/A	0.135	0.050	0.731	9e-35
Q9QZQ1	1820	Afadin OS=Mus musculus GN	yes	N/A	0.135	0.051	0.731	9e-35
P55196	1824	Afadin OS=Homo sapiens GN	yes	N/A	0.135	0.050	0.731	1e-34
Q12923	2485	Tyrosine-protein phosphat	no	N/A	0.301	0.082	0.283	2e-10
O75970	2070	Multiple PDZ domain prote	no	N/A	0.267	0.088	0.284	4e-10
O35867	1095	Neurabin-1 OS=Rattus norv	no	N/A	0.112	0.070	0.45	4e-10
Q9ULJ8	1098	Neurabin-1 OS=Homo sapien	no	N/A	0.112	0.070	0.45	5e-10
Q63ZW7	1834	InaD-like protein OS=Mus	no	N/A	0.257	0.095	0.264	2e-09
O35274	817	Neurabin-2 OS=Rattus norv	no	N/A	0.096	0.080	0.471	1e-08
Q6R891	817	Neurabin-2 OS=Mus musculu	no	N/A	0.096	0.080	0.471	1e-08

>sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1

 Score =  149 bits (375), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct: 1027 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1086

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
            RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct: 1087 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1119

Belongs to an adhesion system, probably together with the E-cadherin-catenin system, which plays a role in the organization of homotypic, interneuronal and heterotypic cell-cell adherens junctions (AJs). Nectin- and actin-filament-binding protein that connects nectin to the actin cytoskeleton. May play a key role in the organization of epithelial structures of the embryonic ectoderm.
Rattus norvegicus (taxid: 10116)

>sp|Q9QZQ1|AFAD_MOUSE Afadin OS=Mus musculus GN=Mllt4 PE=1 SV=3

 Score =  149 bits (375), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct: 1020 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1079

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
            RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct: 1080 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1112

Belongs to an adhesion system, probably together with the E-cadherin-catenin system, which plays a role in the organization of homotypic, interneuronal and heterotypic cell-cell adherens junctions (AJs). Nectin- and actin-filament-binding protein that connects nectin to the actin cytoskeleton. May play a key role in the organization of epithelial structures of the embryonic ectoderm.

Mus musculus (taxid: 10090)

>sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=3

 Score =  149 bits (375), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct: 1020 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1079

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
            RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct: 1080 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1112

Belongs to an adhesion system, probably together with the E-cadherin-catenin system, which plays a role in the organization of homotypic, interneuronal and heterotypic cell-cell adherens junctions (AJs). Nectin- and actin-filament-binding protein that connects nectin to the actin cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q12923|PTN13_HUMAN Tyrosine-protein phosphatase non-receptor type 13 OS=Homo sapiens GN=PTPN13 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 114/265 (43%), Gaps = 59/265 (22%)

Query: 120  GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI---- 175
            GIY+K+V+  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V L +    
Sbjct: 1394 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ 1453

Query: 176  ---AKQGAIYHGLATLLSQ------PSPVMTRGQVKTY-----ESTISVQQRKERSSQNL 221
               +K+        TL  Q      P  V    QVK Y     E+T  V+  K  S    
Sbjct: 1454 SPTSKEHVPVTPQCTLSDQNAQGQGPEKVKKTTQVKDYSFVTEENTFEVKLFKNSS---- 1509

Query: 222  HDMNNGVGGSHHPAPGPGSGMNHHPVVSRQAS-TPSLPQASPYPAPAPAPADPERFYQNL 280
                 G+G S                 SR+ +  P    AS        P  P       
Sbjct: 1510 -----GLGFS----------------FSREDNLIPEQINASIVRVKKLFPGQPAA----- 1543

Query: 281  SVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA-----IYH 335
                 ++G++  GD +LKV+G SL G++Q++    L  T P V L + +        I  
Sbjct: 1544 -----ESGKIDVGDVILKVNGASLKGLSQQEVISALRGTAPEVFLLLCRPPPGVLPEIDT 1598

Query: 336  GLATLLSQPSPVMTRAYKNMNKFKC 360
             L T L  P+ V+  + K+ ++  C
Sbjct: 1599 ALLTPLQSPAQVLPNSSKDSSQPSC 1623

Tyrosine phosphatase which regulates negatively FAS-induced apoptosis and NGFR-mediated pro-apoptotic signaling.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|O75970|MPDZ_HUMAN Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 42/225 (18%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G    G+ +K+++ GG AD +GRL +GD +LK+    L G++ E+ A+ L + G  V L 
Sbjct: 273 GGKATGVIVKTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLM 332

Query: 175 IAKQGAIYHGLA------TLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGV 228
           IA+ GAI    A      TL S P+   +  +++   ST    Q+ E S     ++   V
Sbjct: 333 IAR-GAIEERTAPTALGITLSSSPT---STPELRVDAST----QKGEESETFDVELTKNV 384

Query: 229 GGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNL--SVYRNQ 286
                     G G+     +  +   PS                   F +++  S     
Sbjct: 385 ---------QGLGITIAGYIGDKKLEPS-----------------GIFVKSITKSSAVEH 418

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
           +GR+Q GDQ++ VDG +L G T ++A E L  TG  V L + ++G
Sbjct: 419 DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 463

Interacts with HTR2C and provokes its clustering at the cell surface (By similarity). Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Homo sapiens (taxid: 9606)

>sp|O35867|NEB1_RAT Neurabin-1 OS=Rattus norvegicus GN=Ppp1r9a PE=1 SV=1

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           AG ++LGI++K+V +GGAA  +GR+Q  DQ+++VDG SLVG+TQ  AA  L  T   V  
Sbjct: 528 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 587

Query: 174 EIAKQ--GAIYHGLATLLSQ 191
            I ++  G +   +A L+SQ
Sbjct: 588 VIGREKPGQVSE-VAQLISQ 606

Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May be involved in neurite formation. Inhibits protein phosphatase 1-alpha activity. May play an important role in linking the actin cytoskeleton to the plasma membrane at the synaptic junction.

Rattus norvegicus (taxid: 10116)

>sp|Q9ULJ8|NEB1_HUMAN Neurabin-1 OS=Homo sapiens GN=PPP1R9A PE=1 SV=2

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           AG ++LGI++K+V +GGAA  +GR+Q  DQ+++VDG SLVG+TQ  AA  L  T   V  
Sbjct: 527 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 586

Query: 174 EIAKQ--GAIYHGLATLLSQ 191
            I ++  G +   +A L+SQ
Sbjct: 587 VIGREKPGQVSE-VAQLISQ 605

Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May be involved in neurite formation. Inhibits protein phosphatase 1-alpha activity.

Homo sapiens (taxid: 9606)

>sp|Q63ZW7|INADL_MOUSE InaD-like protein OS=Mus musculus GN=Inadl PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 43/219 (19%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ- 178
           G+ ++++V GG AD +GRLQ GD +LK+ G ++ G+T E+ A+ L   G  V + +A+  
Sbjct: 269 GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDP 328

Query: 179 -GAIYHGLATLLSQPSPVMTRGQVKTYES------TISVQQRKERSSQNLHDMNNGVGGS 231
            G I     T +S P   +     +T +S      T SV+  K +  Q+L     G  G+
Sbjct: 329 VGEIAVTPPTPVSLPV-ALPAVATRTLDSDRSPFETYSVELVK-KDGQSLGIRIVGYVGT 386

Query: 232 HHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQ 291
            H  PG  SG+    ++         P ++ Y                       NG++Q
Sbjct: 387 AH--PGEASGIYVKSII---------PGSAAY----------------------HNGQIQ 413

Query: 292 AGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
             D+++ VDG ++ G   +   E L   G +V L + ++
Sbjct: 414 VNDKIVAVDGVNIQGFANQDVVEVLRNAGQVVHLTLVRR 452

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.

Mus musculus (taxid: 10090)

>sp|O35274|NEB2_RAT Neurabin-2 OS=Rattus norvegicus GN=Ppp1r9b PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 113 GAGQD----RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
           GAG D    +LGI++K+V +GGAA  +GR+Q  D L++VDG SLVG+TQ  AA  L  T 
Sbjct: 514 GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 573

Query: 169 PIVTLEIAKQ 178
             V   I ++
Sbjct: 574 GRVRFMIGRE 583

Seems to act as a scaffold protein in multiple signaling pathways. Modulates excitatory synaptic transmission and dendritic spine morphology. Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May play an important role in linking the actin cytoskeleton to the plasma membrane at the synaptic junction. Believed to target protein phosphatase 1/PP1 to dendritic spines, which are rich in F-actin, and regulates its specificity toward ion channels and other substrates, such as AMPA-type and NMDA-type glutamate receptors. Plays a role in regulation of G-protein coupled receptor signaling, including dopamine D2 receptors and alpha-adrenergic receptors. May establish a signaling complex for dopaminergic neurotransmission through D2 receptors by linking receptors downstream signaling molecules and the actin cytoskeleton. Binds to ADRA1B and RGS2 and mediates regulation of ADRA1B signaling. May confer to Rac signaling specificity by binding to both, RacGEFs and Rac effector proteins. Probably regulates p70 S6 kinase activity by forming a complex with TIAM1. Required for hepatocyte growth factor (HGF)-induced cell migration.

Rattus norvegicus (taxid: 10116)

>sp|Q6R891|NEB2_MOUSE Neurabin-2 OS=Mus musculus GN=Ppp1r9b PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 113 GAGQD----RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
           GAG D    +LGI++K+V +GGAA  +GR+Q  D L++VDG SLVG+TQ  AA  L  T 
Sbjct: 514 GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 573

Query: 169 PIVTLEIAKQ 178
             V   I ++
Sbjct: 574 GRVRFMIGRE 583

Seems to act as a scaffold protein in multiple signaling pathways. Modulates excitatory synaptic transmission and dendritic spine morphology. Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May play an important role in linking the actin cytoskeleton to the plasma membrane at the synaptic junction. Believed to target protein phosphatase 1/PP1 to dendritic spines, which are rich in F-actin, and regulates its specificity toward ion channels and other substrates, such as AMPA-type and NMDA-type glutamate receptors. Plays a role in regulation of G-protein coupled receptor signaling, including dopamine D2 receptors and alpha-adrenergic receptors. May establish a signaling complex for dopaminergic neurotransmission through D2 receptors by linking receptors downstream signaling molecules and the actin cytoskeleton. Binds to ADRA1B and RGS2 and mediates regulation of ADRA1B signaling. May confer to Rac signaling specificity by binding to both, RacGEFs and Rac effector proteins. Probably regulates p70 S6 kinase activity by forming a complex with TIAM1. Required for hepatocyte growth factor (HGF)-induced cell migration.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	684
345480028	2043	PREDICTED: afadin-like [Nasonia vitripen	0.247	0.082	0.557	2e-46
307200209	2100	Afadin [Harpegnathos saltator]	0.261	0.085	0.510	2e-45
242025058	1961	afadin, putative [Pediculus humanus corp	0.219	0.076	0.573	2e-41
328715607	1909	PREDICTED: afadin-like [Acyrthosiphon pi	0.084	0.030	0.882	3e-41
332025107	2438	Afadin [Acromyrmex echinatior]	0.114	0.031	0.882	3e-41
350405941	2204	PREDICTED: hypothetical protein LOC10074	0.134	0.041	0.892	5e-41
383865464	2805	PREDICTED: uncharacterized protein LOC10	0.137	0.033	0.882	8e-41
328792941	2287	PREDICTED: hypothetical protein LOC41016	0.135	0.040	0.882	1e-40
195395920	2106	GJ11020 [Drosophila virilis] gi|19414329	0.175	0.056	0.68	3e-39
195152629	2117	GL22199 [Drosophila persimilis] gi|19411	0.175	0.056	0.672	4e-39

>gi|345480028|ref|XP_001605722.2| PREDICTED: afadin-like [Nasonia vitripennis]

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 137/210 (65%), Gaps = 41/210 (19%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQDRLGIYIKSVV GGAADA+GRL AGDQLLKVDGQSLVGITQEKAAEYLV
Sbjct: 1035 LSIVAAKGAGQDRLGIYIKSVVAGGAADADGRLSAGDQLLKVDGQSLVGITQEKAAEYLV 1094

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR-----GQVK---------TYESTISVQ 211
            RTGPIVTLE+AKQGAIYHGLATLLSQPSP+MTR     G+++            S+ SV 
Sbjct: 1095 RTGPIVTLEVAKQGAIYHGLATLLSQPSPIMTRDVGTEGKLQHEVFNPGYSRASSSNSVT 1154

Query: 212  QR---------------KERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPS 256
                             + RSS NLHD +            P SG+++     RQ S+P+
Sbjct: 1155 PPVQPPPMPAMNGATSLRSRSSHNLHDPSRA-------GTLPPSGLSN-----RQQSSPN 1202

Query: 257  LPQASPYPAPAPAPADPERFYQNLSVYRNQ 286
            L  + P+ A      + ERFYQNLSVYRNQ
Sbjct: 1203 LNPSHPHGANNMQSNEAERFYQNLSVYRNQ 1232

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200209|gb|EFN80503.1| Afadin [Harpegnathos saltator]

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/237 (51%), Positives = 140/237 (59%), Gaps = 58/237 (24%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQDRLGIYIKSVV GGAADA+GRL AGDQLLKVDGQSLVGITQEKAAEYLV
Sbjct: 1017 LSIVAAKGAGQDRLGIYIKSVVTGGAADADGRLTAGDQLLKVDGQSLVGITQEKAAEYLV 1076

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISV---------QQRKER 216
            RTGPIVTLE+AKQGAIYHGLATLLSQPSPVMTRG  +  E  +           Q    +
Sbjct: 1077 RTGPIVTLEVAKQGAIYHGLATLLSQPSPVMTRGPRRMSERDLPSRLGHDATPQQIHSSK 1136

Query: 217  SSQNLHDMNNGVGGSH---HPA---------------PGPGSGMN-------------HH 245
            S   LH++       H   +P                P P + +N             H 
Sbjct: 1137 SVPALHNVGTEAKQQHEVFNPGYSRASSSNSVTPPVQPPPMATINSATSLRSRSSHNLHD 1196

Query: 246  P----------VVSRQASTPSLPQASPYPAPAPAP-----ADPERFYQNLSVYRNQN 287
            P          +VSRQ S+P+L   +P P    AP      + ERFYQNLSVYRNQ+
Sbjct: 1197 PMRIGTLPPSGLVSRQQSSPNL---NPNPTHTNAPLNAQNLEAERFYQNLSVYRNQD 1250

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025058|ref|XP_002432943.1| afadin, putative [Pediculus humanus corporis] gi|212518452|gb|EEB20205.1| afadin, putative [Pediculus humanus corporis]

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 119/169 (70%), Gaps = 19/169 (11%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQDRLGIYIKSVV GGAAD +GRLQAGDQLLKVDGQSLVGITQEKAAEYLV
Sbjct: 1040 LSIVAAKGAGQDRLGIYIKSVVAGGAADVDGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 1099

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKE---------- 215
            RTGP+VTLE+AKQGAIYHGLATLLSQPSP+M RG  +  E  +  +   E          
Sbjct: 1100 RTGPVVTLEVAKQGAIYHGLATLLSQPSPLMARGPRRMSERDLPSRLHSEDAKKQQLPPH 1159

Query: 216  ---RSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQAS 261
               +SS+++  +++  G      P P      +P  SR +ST S+PQ++
Sbjct: 1160 APIQSSKSVPSLHSAQG------PEPRQQEVFNPGYSRTSSTNSIPQSA 1202

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328715607|ref|XP_001944877.2| PREDICTED: afadin-like [Acyrthosiphon pisum]

 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 92/94 (97%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQ+RLGIYIKSVVKGGAADA+GRLQAGDQLLKVDGQSLVGITQEKAAEYLV
Sbjct: 1012 LSIVAAKGAGQERLGIYIKSVVKGGAADADGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 1071

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRG 199
            RTGP+V+LE+AKQGAI+HGLATLLSQPSPVMTRG
Sbjct: 1072 RTGPVVSLEVAKQGAIHHGLATLLSQPSPVMTRG 1105

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025107|gb|EGI65288.1| Afadin [Acromyrmex echinatior]

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 89/94 (94%)

Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           LS ++ +GAGQDRLGIYIKSVV GGAADA+GRL AGDQLLKVDGQSLVGITQEKAAEYLV
Sbjct: 568 LSIVAAKGAGQDRLGIYIKSVVAGGAADADGRLTAGDQLLKVDGQSLVGITQEKAAEYLV 627

Query: 166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRG 199
           RTGPIVTLE+AKQGAIYHGLATLLSQPSPVM+R 
Sbjct: 628 RTGPIVTLEVAKQGAIYHGLATLLSQPSPVMSRA 661

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405941|ref|XP_003487601.1| PREDICTED: hypothetical protein LOC100743701 [Bombus impatiens]

 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/93 (89%), Positives = 89/93 (95%)

Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           LS ++ +GAGQDRLGIYIKSVV GGAADA+GRL AGDQLLKVDGQSLVGITQEKAAEYLV
Sbjct: 902 LSIVAAKGAGQDRLGIYIKSVVAGGAADADGRLTAGDQLLKVDGQSLVGITQEKAAEYLV 961

Query: 166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
           RTGP+VTLE+AKQGAIYHGLATLLSQPSPVMTR
Sbjct: 962 RTGPVVTLEVAKQGAIYHGLATLLSQPSPVMTR 994

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865464|ref|XP_003708193.1| PREDICTED: uncharacterized protein LOC100877377 [Megachile rotundata]

 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 89/94 (94%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQDRLGIYIKSVV GGAADA+GRL AGDQLLKVDGQSLVGITQEKAAEYLV
Sbjct: 1034 LSIVAAKGAGQDRLGIYIKSVVAGGAADADGRLTAGDQLLKVDGQSLVGITQEKAAEYLV 1093

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRG 199
            RTGPIVTLE+AKQGAIYHGLATLLSQPSPVM+R 
Sbjct: 1094 RTGPIVTLEVAKQGAIYHGLATLLSQPSPVMSRA 1127

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792941|ref|XP_393645.4| PREDICTED: hypothetical protein LOC410161 [Apis mellifera]

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 88/94 (93%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQDRLGIYIKSVV GGAADA+GRL AGDQLLKVDGQSLVGITQEKAAEYLV
Sbjct: 1036 LSIVAAKGAGQDRLGIYIKSVVTGGAADADGRLTAGDQLLKVDGQSLVGITQEKAAEYLV 1095

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRG 199
            RTGPIVTLE+AKQGAIYHGLATLLSQPSPVM R 
Sbjct: 1096 RTGPIVTLEVAKQGAIYHGLATLLSQPSPVMNRA 1129

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195395920|ref|XP_002056582.1| GJ11020 [Drosophila virilis] gi|194143291|gb|EDW59694.1| GJ11020 [Drosophila virilis]

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 103/125 (82%), Gaps = 5/125 (4%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQ+RLGIYIKSVV GGAADA+GRLQAGDQLL+VDGQSL+GITQE+AA+YLV
Sbjct: 1043 LSIVAAKGAGQERLGIYIKSVVPGGAADADGRLQAGDQLLRVDGQSLIGITQERAADYLV 1102

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMN 225
            RTGP+V+LE+AKQGAIYHGLATLL QPSPV+ RG  +  E  +S     E SS++L    
Sbjct: 1103 RTGPVVSLEVAKQGAIYHGLATLLQQPSPVIQRGNRRMSERDLSRMGGAE-SSKSL---- 1157

Query: 226  NGVGG 230
             G+GG
Sbjct: 1158 GGIGG 1162

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195152629|ref|XP_002017239.1| GL22199 [Drosophila persimilis] gi|194112296|gb|EDW34339.1| GL22199 [Drosophila persimilis]

 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 103/125 (82%), Gaps = 5/125 (4%)

Query: 106  LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            LS ++ +GAGQ+RLGIYIKSVV GGAADA+GRLQAGDQLL+VDGQSL+GITQE+AA+YLV
Sbjct: 1039 LSIVAAKGAGQERLGIYIKSVVPGGAADADGRLQAGDQLLRVDGQSLIGITQERAADYLV 1098

Query: 166  RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMN 225
            RTGP+V+LE+AKQGAIYHGLATLL QPSPV+ RG  +  E  ++     E SS++L    
Sbjct: 1099 RTGPVVSLEVAKQGAIYHGLATLLQQPSPVIQRGNRRMSERDLTRMGAAE-SSKSL---- 1153

Query: 226  NGVGG 230
             G+GG
Sbjct: 1154 GGIGG 1158

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	684
FB|FBgn0259212	2051	cno "canoe" [Drosophila melano	0.152	0.050	0.730	4.6e-53
UNIPROTKB|J9NWX6	1774	MLLT4 "Uncharacterized protein	0.135	0.052	0.731	3.6e-32
UNIPROTKB|F1PSU6	1789	MLLT4 "Uncharacterized protein	0.135	0.051	0.731	3.7e-32
MGI|MGI:1314653	1820	Mllt4 "myeloid/lymphoid or mix	0.135	0.051	0.731	8e-32
UNIPROTKB|A8MQ02	1824	MLLT4 "Afadin" [Homo sapiens (	0.135	0.050	0.731	1e-31
UNIPROTKB|P55196	1824	MLLT4 "Afadin" [Homo sapiens (	0.135	0.050	0.731	1e-31
UNIPROTKB|J3KN01	1831	MLLT4 "Afadin" [Homo sapiens (	0.135	0.050	0.731	1e-31
UNIPROTKB|F1LT10	1772	Mllt4 "Afadin" [Rattus norvegi	0.135	0.052	0.731	1.5e-31
RGD|708561	1829	Mllt4 "myeloid/lymphoid or mix	0.135	0.050	0.731	1.7e-31
UNIPROTKB|E1C5E4	1835	MLLT4 "Uncharacterized protein	0.135	0.050	0.741	2.4e-31

FB|FBgn0259212 cno "canoe" [Drosophila melanogaster (taxid:7227)]

 Score = 392 (143.0 bits), Expect = 4.6e-53, Sum P(3) = 4.6e-53
 Identities = 76/104 (73%), Positives = 93/104 (89%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQ++LGIYIKSVV GGAADA+GRLQAGDQLL+VDGQSL+GITQE+AA+YLV
Sbjct:  1024 LSIVAAKGAGQEKLGIYIKSVVPGGAADADGRLQAGDQLLRVDGQSLIGITQERAADYLV 1083

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTIS 209
             RTGP+V+LE+AKQGAIYHGLATLL QPSPV+ RG  +  E  ++
Sbjct:  1084 RTGPVVSLEVAKQGAIYHGLATLLQQPSPVIQRGNRRMSERDLT 1127

GO:0003779 "actin binding" evidence=ISS

GO:0005912 "adherens junction" evidence=NAS;IDA;TAS

GO:0007254 "JNK cascade" evidence=NAS

GO:0007391 "dorsal closure" evidence=IMP;TAS

GO:0007265 "Ras protein signal transduction" evidence=TAS

GO:0005915 "zonula adherens" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0007394 "dorsal closure, elongation of leading edge cells" evidence=NAS

GO:0046328 "regulation of JNK cascade" evidence=IGI;IMP;NAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0016318 "ommatidial rotation" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0048749 "compound eye development" evidence=IGI

GO:0005926 "connecting hemi-adherens junction" evidence=IDA

GO:0048730 "epidermis morphogenesis" evidence=IMP

GO:0048598 "embryonic morphogenesis" evidence=IMP

UNIPROTKB|J9NWX6 MLLT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 353 (129.3 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct:   971 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1030

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
             RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct:  1031 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1063

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PSU6 MLLT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 353 (129.3 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct:   986 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1045

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
             RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct:  1046 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1078

GO:0050839 "cell adhesion molecule binding" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:1314653 Mllt4 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4" [Mus musculus (taxid:10090)]

 Score = 353 (129.3 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct:  1020 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1079

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
             RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct:  1080 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1112

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0005913 "cell-cell adherens junction" evidence=ISO;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0030054 "cell junction" evidence=IDA

GO:0030274 "LIM domain binding" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0050839 "cell adhesion molecule binding" evidence=IPI

UNIPROTKB|A8MQ02 MLLT4 "Afadin" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct:  1020 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1079

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
             RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct:  1080 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1112

GO:0007165 "signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|P55196 MLLT4 "Afadin" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct:  1020 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1079

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
             RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct:  1080 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1112

GO:0007165 "signal transduction" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0050839 "cell adhesion molecule binding" evidence=IEA

GO:0005911 "cell-cell junction" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=TAS

GO:0008022 "protein C-terminus binding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0034332 "adherens junction organization" evidence=TAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|J3KN01 MLLT4 "Afadin" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct:  1027 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1086

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
             RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct:  1087 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1119

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1LT10 Mllt4 "Afadin" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct:   970 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1029

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
             RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct:  1030 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1062

GO:0007165 "signal transduction" evidence=IEA

RGD|708561 Mllt4 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct:  1027 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1086

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
             RT  +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct:  1087 RTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1119

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=ISO

GO:0005911 "cell-cell junction" evidence=ISO

GO:0005912 "adherens junction" evidence=ISO

GO:0005913 "cell-cell adherens junction" evidence=ISO;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0030054 "cell junction" evidence=ISO

GO:0030274 "LIM domain binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=ISO

GO:0050839 "cell adhesion molecule binding" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E1C5E4 MLLT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 359 (131.4 bits), Expect = 2.4e-31, Sum P(3) = 2.4e-31
 Identities = 69/93 (74%), Positives = 84/93 (90%)

Query:   106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
             LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct:  1024 LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 1083

Query:   166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR 198
             RTG +VTLE+AKQGAIYHGLATLL+QPSP+M R
Sbjct:  1084 RTGSVVTLEVAKQGAIYHGLATLLNQPSPMMQR 1116

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	684
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	1e-13
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	4e-13
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-12
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	6e-09
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	3e-07
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	2e-06
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	5e-06
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-05
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	1e-04
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	2e-04
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	2e-04
PRK10779	449	PRK10779, PRK10779, zinc metallopeptidase RseP; Pr	8e-04
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	0.004

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
           GI++  V  GG A+  G L+ GD++L+V+G S+ G+T E+A E L  +G  VTL + 
Sbjct: 27  GIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           G+ + SVV G  A   G L+ GD +L+V+G S+ G+T  +A + L + G  VTL + + G
Sbjct: 27  GVVVSSVVPGSPAAKAG-LRVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
            G+  D  GI++  V+ GGAA+A G LQ GD++L ++GQ L  ++ ++A   L  +G  V
Sbjct: 18  GGSDGDP-GIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLENLSHDEAVLALKGSGGEV 75

Query: 172 TLEIA 176
           TL I 
Sbjct: 76  TLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEI 175
           G+ + SV  G  A+  G LQAGD +L V+G  +  +T E  AE L +  G  VTL +
Sbjct: 14  GVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           G L+ GD++L+V+G S+ G+T E+A E L  +G  VTL + 
Sbjct: 42  GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEI 175
           G+ I SV+ G  A   G ++AGD ++ +DG+ + G++ E   + L  + G  V L +
Sbjct: 14  GLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTL 69

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
           L+ GD +L+V+G S+ G+T  +A + L + G  VTL + + G
Sbjct: 44  LRVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           + G LQ GD++L ++GQ L  ++ ++A   L  +G  VTL I 
Sbjct: 38  EAGGLQEGDRILSINGQDLENLSHDEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 116 QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLE 174
           +D  G+ + S + G  A   G ++ GD ++K+DG+S+ G++ ++A + +    G  VTL 
Sbjct: 109 EDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLT 167

Query: 175 IAKQGA 180
           I + G 
Sbjct: 168 ILRAGG 173

Length = 406

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEI 327
           +   LQAGD +L V+G  +  +T E  AE L +  G  VTL +
Sbjct: 27  ERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           G+ + SV  G  A   G L+ GD +L V+G+ +  +   + A   ++ G  VTL + + G
Sbjct: 25  GVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGG 83

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 126 VVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL--EIAKQGAI 181
           V    AA   G LQAGD+++KVDGQ L   TQ +    LVR  P   L  EI +QG+ 
Sbjct: 228 VQPNSAASKAG-LQAGDRIVKVDGQPL---TQWQTFVTLVRDNPGKPLALEIERQGSP 281

Length = 449

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQ 150
            I  VV G  A   G L+AGD++L ++GQ
Sbjct: 15  VIGEVVPGSPAAKAG-LKAGDRILAINGQ 42

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	684
KOG1892|consensus	1629		100.0
KOG3209|consensus	984		99.93
KOG3209|consensus	984		99.87
KOG3580|consensus	1027		99.8
KOG3580|consensus	1027		99.61
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.48
KOG3605|consensus	829		99.43
KOG3551|consensus	506		99.35
KOG3550|consensus	207		99.31
KOG3549|consensus	505		99.18
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.15
KOG1892|consensus	1629		99.11
PRK10942	473	serine endoprotease; Provisional	99.01
PRK10139	455	serine endoprotease; Provisional	99.0
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.97
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.94
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.93
KOG3553|consensus	124		98.91
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.82
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.77
KOG3571|consensus	626		98.71
KOG3550|consensus	207		98.67
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.64
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.57
KOG3551|consensus	506		98.52
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.44
KOG3651|consensus	429		98.4
KOG3552|consensus	1298		98.39
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.11
KOG3549|consensus	505		98.07
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.05
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.03
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.01
KOG3606|consensus	358		98.0
KOG3571|consensus	626		97.95
KOG0609|consensus	542		97.95
PLN00049	389	carboxyl-terminal processing protease; Provisional	97.93
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	97.9
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.89
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.87
KOG3542|consensus	1283		97.86
KOG4371|consensus	1332		97.86
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.82
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.8
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.78
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	97.71
KOG3553|consensus	124		97.65
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	97.64
PRK11186	667	carboxy-terminal protease; Provisional	97.63
KOG3651|consensus	429		97.54
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	97.45
KOG4407|consensus	1973		97.36
KOG3606|consensus	358		97.24
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.2
KOG3605|consensus	829		97.16
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.15
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.13
PRK10898	353	serine endoprotease; Provisional	97.11
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.08
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.04
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.02
PRK10942	473	serine endoprotease; Provisional	96.96
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	96.95
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	96.94
PRK10139	455	serine endoprotease; Provisional	96.94
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.67
KOG3938|consensus	334		96.66
PLN00049	389	carboxyl-terminal processing protease; Provisional	96.66
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	96.59
PRK11186	667	carboxy-terminal protease; Provisional	96.56
PRK10779	449	zinc metallopeptidase RseP; Provisional	96.52
KOG3552|consensus	1298		96.47
KOG0606|consensus	1205		96.26
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	96.18
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.11
KOG0609|consensus	542		96.05
KOG3542|consensus	1283		95.78
KOG1738|consensus	638		95.74
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	95.66
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	95.27
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	95.24
PRK10898	353	serine endoprotease; Provisional	95.24
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	95.01
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	94.93
KOG1421|consensus	955		94.66
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	94.13
KOG3129|consensus	231		93.76
PRK09681	276	putative type II secretion protein GspC; Provision	93.07
KOG3532|consensus	1051		92.93
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	92.45
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	92.23
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	92.16
KOG4371|consensus	1332		91.34
KOG3938|consensus	334		91.22
PRK09681	276	putative type II secretion protein GspC; Provision	90.41
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	88.62
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	88.32
KOG1320|consensus	473		88.18
KOG0606|consensus	1205		87.39
KOG1421|consensus	955		85.51
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	84.2
KOG1320|consensus	473		83.45
KOG4407|consensus	1973		82.53
KOG1738|consensus	638		81.39

>KOG1892|consensus

Probab=100.00  E-value=1.2e-34  Score=326.76  Aligned_cols=186  Identities=43%  Similarity=0.685  Sum_probs=135.9

Q ss_pred             HHHHHHHHhhccccHHHHHhhhhccccceeeecCcccCCCcccCCCCccccCCCCCCC---------CCCC-------CC
Q psy2533           7 RDMLRQEAKLSEMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNRPPPG---------PERG-------DR   70 (684)
Q Consensus         7 ~~~~~q~~k~~~~~~ee~~r~~EI~i~~Qe~~~g~v~~~~~rl~~G~s~q~l~~~pp~---------P~~~-------~~   70 (684)
                      +|+++-.-.+||.++||+.|.-.  ..||-...-.+.--.+-+++||+|.++|.-|-.         ...+       ..
T Consensus       824 ~dlvd~v~r~AE~~ADeLtr~DG--reV~LEEspeL~LpfLlP~DGyscdvvR~iP~GL~~fL~pLqqrg~Crl~~~p~s  901 (1629)
T KOG1892|consen  824 TDLVDNVVRVAENTADELTRSDG--REVQLEESPELQLPFLLPEDGYSCDVVRNIPNGLQEFLDPLQQRGFCRLIPHPRS  901 (1629)
T ss_pred             hHHHHHHHHHHHhhhhHhhhccC--ceeecccCcccccceeecCCCceeeeeccCChhHHHHHHHHHhccceeecCCCCC
Confidence            67888888999999999998754  222222222222223556999999998865421         0000       01


Q ss_pred             CC--CCCCCC--CC--------CCCCCCCCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCcc
Q psy2533          71 PA--SAYLPN--YP--------GTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRL  138 (684)
Q Consensus        71 ps--s~~~p~--~~--------~sp~~~~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrL  138 (684)
                      |.  +.|.-.  +.        -..+...+....+|++.|  +.|+|++|+..+|.+...+||||++|++||+|+.+|||
T Consensus       902 pg~wT~ymh~~~~~ss~a~~n~l~q~~~~~pei~~vtL~K--nnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL  979 (1629)
T KOG1892|consen  902 PGTWTIYMHGADYESSLARENELAQPLRKEPEIITVTLKK--NNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRL  979 (1629)
T ss_pred             CceeEEEeeccccccchhhhhhccchhhcCCceEEEEEec--cCCceEEEEeeccCCccccceEEEEeccCCcccccccc
Confidence            10  000000  00        001111222344555544  59999999999998888899999999999999999999


Q ss_pred             ccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533         139 QAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVM  196 (684)
Q Consensus       139 qvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~  196 (684)
                      ..||+||.|||+++.|++.+.|..++..+|..|+|.|..++.+++...++..+|+|..
T Consensus       980 ~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKqgAiyhGLatlL~qpsP~~ 1037 (1629)
T KOG1892|consen  980 EAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQGAIYHGLATLLGQPSPTT 1037 (1629)
T ss_pred             ccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhhhhHHHHHHHHhcCCCcch
Confidence            9999999999999999999999999999999999999999999999999888888876

>KOG3209|consensus

Probab=99.93  E-value=6.3e-25  Score=244.57  Aligned_cols=203  Identities=21%  Similarity=0.280  Sum_probs=150.7

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .-.|.+.|+.++||||.|......+.    --|.+|++|+||++||+|++||+|++|||+++.+++|.+.|.+||.+|-+
T Consensus       754 ~yDV~lhR~ENeGFGFVi~sS~~kp~----sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGls  829 (984)
T KOG3209|consen  754 PYDVVLHRKENEGFGFVIMSSQNKPE----SGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLS  829 (984)
T ss_pred             CeeeEEecccCCceeEEEEecccCCC----CCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCce
Confidence            34588899999999999997655442    22999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCccccccc----c----ccCCCCCccc---cCCC-----cc-cc--ccc-----cccccccccccccccCCC
Q psy2533         171 VTLEIAKQGAIYHGLA----T----LLSQPSPVMT---RGQV-----KT-YE--STI-----SVQQRKERSSQNLHDMNN  226 (684)
Q Consensus       171 V~LvV~R~~~~~~~~s----t----l~s~psP~~~---s~~~-----~~-se--s~l-----s~~~~~~~~sv~L~k~s~  226 (684)
                      |+|+|.-.......+.    .    .....+..+.   .++.     .. ..  ...     ...+....+.+.+.++..
T Consensus       830 VtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~k  909 (984)
T KOG3209|consen  830 VTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAK  909 (984)
T ss_pred             EEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeecccc
Confidence            9999986543211100    0    0000000000   0000     00 00  000     112233456788999999


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEec
Q psy2533         227 GVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSL  304 (684)
Q Consensus       227 GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl  304 (684)
                      ||||+++.    |.                             ....+.||-.|.  |+|.++|++++||+|++|||+++
T Consensus       910 GFGFSiRG----Gr-----------------------------eynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesT  956 (984)
T KOG3209|consen  910 GFGFSIRG----GR-----------------------------EYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGEST  956 (984)
T ss_pred             ccceEeec----cc-----------------------------ccccceEEEEeccCCCccccCceeecceEEEecCccc
Confidence            99999982    21                             123467888887  99999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         305 VGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       305 ~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .+|+|..|+++||+.+..|.|++.|.
T Consensus       957 kgmtH~rAIelIk~gg~~vll~Lr~g  982 (984)
T KOG3209|consen  957 KGMTHDRAIELIKQGGRRVLLLLRRG  982 (984)
T ss_pred             CCCcHHHHHHHHHhCCeEEEEEeccC
Confidence            99999999999999998888887654

>KOG3209|consensus

Probab=99.87  E-value=4.8e-21  Score=213.87  Aligned_cols=186  Identities=24%  Similarity=0.360  Sum_probs=140.6

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--  167 (684)
                      ....|.++| ...||||.|.||.+.+   .+|||..|++.|+|+.+|||+.||.|+.|+|++|.+.+|.+||.+|..+  
T Consensus       649 k~ldV~L~r-kesGFGFRiLGG~ep~---qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AAr  724 (984)
T KOG3209|consen  649 KELDVFLRR-KESGFGFRILGGDEPG---QPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAAR  724 (984)
T ss_pred             cceeEEEEe-eccccceEEecCCCCC---CeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHh
Confidence            455555654 5679999999997755   5899999999999999999999999999999999999999999999865  


Q ss_pred             CCEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccc-cCCCCCCCCCCCCCC-CCCCcccc
Q psy2533         168 GPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLH-DMNNGVGGSHHPAPG-PGSGMNHH  245 (684)
Q Consensus       168 g~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~-k~s~GlGfSi~~~~g-~G~Gi~ik  245 (684)
                      .+.|.|+|+|...-..      ...+|.....+..             .+.+.++ +-..||||.+..... ++.|    
T Consensus       725 nghV~LtVRRkv~~~~------~~rsp~~s~~~~~-------------~yDV~lhR~ENeGFGFVi~sS~~kp~sg----  781 (984)
T KOG3209|consen  725 NGHVNLTVRRKVRTGP------ARRSPRNSAAPSG-------------PYDVVLHRKENEGFGFVIMSSQNKPESG----  781 (984)
T ss_pred             cCceEEEEeeeeeecc------ccCCcccccCCCC-------------CeeeEEecccCCceeEEEEecccCCCCC----
Confidence            5679999988643211      1112222111111             1223333 356789988763211 1111    


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeE
Q psy2533         246 PVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  323 (684)
Q Consensus       246 pIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~V  323 (684)
                                                     |-.|+  ++|++||+|++||+|++|||+++.+++|.+.+.+||.+|-.|
T Consensus       782 -------------------------------iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsV  830 (984)
T KOG3209|consen  782 -------------------------------IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSV  830 (984)
T ss_pred             -------------------------------ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceE
Confidence                                           22333  689999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCcc
Q psy2533         324 TLEIAKQGAI  333 (684)
Q Consensus       324 tL~V~R~~~~  333 (684)
                      +|.|+.++..
T Consensus       831 tLtIip~ee~  840 (984)
T KOG3209|consen  831 TLTIIPPEEA  840 (984)
T ss_pred             EEEEcChhcc
Confidence            9999976543

>KOG3580|consensus

Probab=99.80  E-value=1.9e-18  Score=190.30  Aligned_cols=231  Identities=19%  Similarity=0.293  Sum_probs=147.6

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCC---CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQ---DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV  165 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~---~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk  165 (684)
                      ....+|++.|.+..||||.|.||++.+.   +...|+|+.|.|||||  .|+|+.||+|+.|||+++.+..|.-||+.|+
T Consensus         7 WEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLr   84 (1027)
T KOG3580|consen    7 WEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLR   84 (1027)
T ss_pred             hhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHH
Confidence            3456899999999999999999999875   4668999999999999  6999999999999999999999999999999


Q ss_pred             cCCCEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccc---------------------cccccC
Q psy2533         166 RTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSS---------------------QNLHDM  224 (684)
Q Consensus       166 ~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~s---------------------v~L~k~  224 (684)
                      .++....++|.|........    ..++|.... +.......-...++.....                     ......
T Consensus        85 ksgK~A~ItvkRprkvqvpa----~~asPp~s~-~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~  159 (1027)
T KOG3580|consen   85 KSGKVAAITVKRPRKVQVPA----LQASPPLSQ-DDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPH  159 (1027)
T ss_pred             hhccceeEEecccceeeccc----cCCCCCCCC-ccccccchhccCcccccccccccccccccCCcccccccccccCCcc
Confidence            99999999998876542211    122221110 0000000000000100000                     000000


Q ss_pred             CC----CCCCCCCCCCCCCC-CcccccccccccCCCCCCCCCCCCCCC-------------CCCCCCCcEEEecc--hhh
Q psy2533         225 NN----GVGGSHHPAPGPGS-GMNHHPVVSRQASTPSLPQASPYPAPA-------------PAPADPERFYQNLS--VYR  284 (684)
Q Consensus       225 s~----GlGfSi~~~~g~G~-Gi~ikpIv~~~~~t~slp~~sl~~gs~-------------~~~~d~GIFV~sI~--GaA  284 (684)
                      ..    .-+++. ..+|+.. +..+   ...   ...+|.-..-++..             +-.....|||+.|.  |.|
T Consensus       160 ~R~rsrer~ls~-~~~gprs~~r~~---~ss---~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLA  232 (1027)
T KOG3580|consen  160 ERARSRERDLSR-DRRGPRSRSREH---PSS---RSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLA  232 (1027)
T ss_pred             cccccccccccc-CCCCCccccccc---ccC---CCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhcccchh
Confidence            00    000000 0000000 0000   000   00000000000000             00124568999998  999


Q ss_pred             hhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       285 ardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      +++|+|+.||.||.|||+..++|++.+|..+|..+..++.|+|.|....
T Consensus       233 ardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~q  281 (1027)
T KOG3580|consen  233 ARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQ  281 (1027)
T ss_pred             hccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCc
Confidence            9999999999999999999999999999999999999999999997543

>KOG3580|consensus

Probab=99.61  E-value=1.2e-14  Score=160.68  Aligned_cols=241  Identities=20%  Similarity=0.257  Sum_probs=143.3

Q ss_pred             CCCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533          86 RLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV  165 (684)
Q Consensus        86 ~~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk  165 (684)
                      ......+.+.+..+.++.||+.+..         -|||+.|...|.|+++|.|+.||.||.|||+...+|+..+|..+|.
T Consensus       195 ~~~~p~kv~LvKsR~nEEyGlrLgS---------qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIE  265 (1027)
T KOG3580|consen  195 GRPGPIKVLLVKSRANEEYGLRLGS---------QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIE  265 (1027)
T ss_pred             CCCCcceEEEEeeccchhhcccccc---------hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHH
Confidence            3344566666777789999998852         4999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEEecCcccccccc--------------------ccCCCCCccccCCCcccc---cccccccccccc-cccc
Q psy2533         166 RTGPIVTLEIAKQGAIYHGLAT--------------------LLSQPSPVMTRGQVKTYE---STISVQQRKERS-SQNL  221 (684)
Q Consensus       166 ~sg~~V~LvV~R~~~~~~~~st--------------------l~s~psP~~~s~~~~~se---s~ls~~~~~~~~-sv~L  221 (684)
                      ++.+.+.|+|.|+.........                    ....|++...........   ..++..+..... ...+
T Consensus       266 kS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~  345 (1027)
T KOG3580|consen  266 KSRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRL  345 (1027)
T ss_pred             hccCceEEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhc
Confidence            9999999999997533211100                    001111111100000000   011110000000 0000


Q ss_pred             ---------ccCCCCCCCCCCC-------------CCCCC--CCcccccc----cccccC--C---CCCCCCCCCCCCCC
Q psy2533         222 ---------HDMNNGVGGSHHP-------------APGPG--SGMNHHPV----VSRQAS--T---PSLPQASPYPAPAP  268 (684)
Q Consensus       222 ---------~k~s~GlGfSi~~-------------~~g~G--~Gi~ikpI----v~~~~~--t---~slp~~sl~~gs~~  268 (684)
                               ++.......+..+             .+.+.  ....+.|-    .+....  +   --..+.+++... +
T Consensus       346 s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KGdSvGLRL-A  424 (1027)
T KOG3580|consen  346 SRMGATPTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKGDSVGLRL-A  424 (1027)
T ss_pred             ccCCCCCCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecCCeeeeEe-c
Confidence                     0000000000000             00000  00000000    000000  0   000011111112 2


Q ss_pred             CCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcccccc
Q psy2533         269 APADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYHGL  337 (684)
Q Consensus       269 ~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~~~~  337 (684)
                      ++++.||||..|.  ++|++.| |+.|||||.||.++++++..++||..|-.  .|..|+|+.++....|+.+
T Consensus       425 GGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~i  496 (1027)
T KOG3580|consen  425 GGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDI  496 (1027)
T ss_pred             cCCceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHH
Confidence            4689999999998  6888887 99999999999999999999999999987  4678999998877666543

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.48  E-value=1.8e-13  Score=116.77  Aligned_cols=81  Identities=23%  Similarity=0.443  Sum_probs=74.2

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEE
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT  172 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~  172 (684)
                      +|++.|....+|||.+.++.+..  ..++||..|.++|||+++| |++||+|++|||.++.+++|.+++.+|+.+++.|+
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~   77 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVT   77 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEE
Confidence            46788888999999999987653  4589999999999999999 99999999999999999999999999999999999


Q ss_pred             EEEE
Q psy2533         173 LEIA  176 (684)
Q Consensus       173 LvV~  176 (684)
                      |+|+
T Consensus        78 L~V~   81 (81)
T PF00595_consen   78 LTVQ   81 (81)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9884

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3605|consensus

Probab=99.43  E-value=1.8e-13  Score=153.12  Aligned_cols=163  Identities=21%  Similarity=0.310  Sum_probs=123.8

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--C
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--G  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g  168 (684)
                      -+.|.|.|..++.||+.|+- .+|+..-+.++|.....+|||+++|.|-+||+|++|||.+|.+++...+..+||..  +
T Consensus       646 qKEVvv~K~kGEiLGVViVE-SGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ  724 (829)
T KOG3605|consen  646 QKEVVLEKHKGEILGVVIVE-SGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ  724 (829)
T ss_pred             cceeeeecccCceeeEEEEe-cCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence            47888999999999999885 34554456789999999999999999999999999999999999999999999976  5


Q ss_pred             CEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCccccccc
Q psy2533         169 PIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVV  248 (684)
Q Consensus       169 ~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv  248 (684)
                      ..|+|.|.++++.......     .|                            +..--|||++.            .-+
T Consensus       725 T~VkltiV~cpPV~~V~I~-----RP----------------------------d~kyQLGFSVQ------------NGi  759 (829)
T KOG3605|consen  725 TAVKLNIVSCPPVTTVLIR-----RP----------------------------DLRYQLGFSVQ------------NGI  759 (829)
T ss_pred             ceEEEEEecCCCceEEEee-----cc----------------------------cchhhccceee------------CcE
Confidence            6799999998765322110     00                            01112555553            112


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCcEEEecchhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEE
Q psy2533         249 SRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE  326 (684)
Q Consensus       249 ~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~  326 (684)
                      +|..          ..                 |.-|..|++|+|-||++|||++|....|+..|.+|..+-..+.++
T Consensus       760 ICSL----------lR-----------------GGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMK  810 (829)
T KOG3605|consen  760 ICSL----------LR-----------------GGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMK  810 (829)
T ss_pred             eehh----------hc-----------------ccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhh
Confidence            2211          11                 222556779999999999999999999999999999876655544

>KOG3551|consensus

Probab=99.35  E-value=4.3e-12  Score=135.71  Aligned_cols=93  Identities=27%  Similarity=0.314  Sum_probs=85.3

Q ss_pred             CCCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533          86 RLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV  165 (684)
Q Consensus        86 ~~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk  165 (684)
                      ......+.|.|+|...+||||+|.||+++.   .||+|++|.+|-+|++.+-|.+||.||+|||.++.+.+|++||+.||
T Consensus        80 ~~~~~~R~V~V~K~d~gGLGISIKGGreNk---MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK  156 (506)
T KOG3551|consen   80 NEAEAERRVRVVKQDAGGLGISIKGGRENK---MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK  156 (506)
T ss_pred             hhhcccceeEEEEecCCcceEEeecCcccC---CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH
Confidence            444567999999999999999999998876   69999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEEecCcc
Q psy2533         166 RTGPIVTLEIAKQGAI  181 (684)
Q Consensus       166 ~sg~~V~LvV~R~~~~  181 (684)
                      .+|..|.|.|......
T Consensus       157 raGkeV~levKy~REv  172 (506)
T KOG3551|consen  157 RAGKEVLLEVKYMREV  172 (506)
T ss_pred             hhCceeeeeeeeehhc
Confidence            9999999999865443

>KOG3550|consensus

Probab=99.31  E-value=3.5e-12  Score=121.88  Aligned_cols=87  Identities=30%  Similarity=0.387  Sum_probs=77.2

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      +.+.|.+- +..+||||.|.||+...   .||||++|+|||.|++.|.|+.||++|+|||+++++-.|+.||.+||.+.+
T Consensus        90 hprvvelp-ktdeglgfnvmggkeqn---spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g  165 (207)
T KOG3550|consen   90 HPRVVELP-KTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG  165 (207)
T ss_pred             CCceeecC-ccccccceeeccCcccC---CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC
Confidence            44555553 46889999999998754   589999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .|.|+|..-+.
T Consensus       166 svklvvrytpk  176 (207)
T KOG3550|consen  166 SVKLVVRYTPK  176 (207)
T ss_pred             cEEEEEecChH
Confidence            99999987653

>KOG3549|consensus

Probab=99.18  E-value=5.4e-11  Score=125.97  Aligned_cols=89  Identities=26%  Similarity=0.350  Sum_probs=83.5

Q ss_pred             CCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          87 LDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        87 ~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      ..+.+++|+|+|.+-+|||++|.||..+.   .||+|++|..+-+|+..|.|.+||-||+|||+.++.++|+++|.+|++
T Consensus        51 ~~s~eRtVtirRQ~vGGlGLSIKGGaEHn---~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN  127 (505)
T KOG3549|consen   51 MESKERTVTIRRQKVGGLGLSIKGGAEHN---LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN  127 (505)
T ss_pred             ccCCceeEEEEeeecCcceeeeccccccC---ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh
Confidence            45789999999999999999999997765   589999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEec
Q psy2533         167 TGPIVTLEIAKQ  178 (684)
Q Consensus       167 sg~~V~LvV~R~  178 (684)
                      +|+.|+|+|..-
T Consensus       128 AGdeVtlTV~~l  139 (505)
T KOG3549|consen  128 AGDEVTLTVKHL  139 (505)
T ss_pred             cCCEEEEEeHhh
Confidence            999999999643

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.15  E-value=3.5e-10  Score=125.01  Aligned_cols=161  Identities=25%  Similarity=0.299  Sum_probs=103.9

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAIYHGLATLLSQPSPVM  196 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~~~~~~stl~s~psP~~  196 (684)
                      .|++|..|.++|||+++| |++||+|++|||..+.+.  .+...++.  ..+..|.|+|.|.........++...+  ..
T Consensus       257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~--~~  331 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASP--EE  331 (428)
T ss_pred             CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCC--Cc
Confidence            589999999999999999 999999999999999864  44555554  357889999999875433222221111  00


Q ss_pred             ccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcE
Q psy2533         197 TRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERF  276 (684)
Q Consensus       197 ~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIF  276 (684)
                      .          .  .           ....-+|+.+.            ++.........+           .....|++
T Consensus       332 ~----------~--~-----------~~~~~lGi~~~------------~l~~~~~~~~~l-----------~~~~~Gv~  365 (428)
T TIGR02037       332 Q----------A--S-----------SSNPFLGLTVA------------NLSPEIRKELRL-----------KGDVKGVV  365 (428)
T ss_pred             c----------c--c-----------ccccccceEEe------------cCCHHHHHHcCC-----------CcCcCceE
Confidence            0          0  0           00011222221            110000000000           01125899


Q ss_pred             EEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533         277 YQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  333 (684)
Q Consensus       277 V~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~  333 (684)
                      |..|.  ++|++.| |++||+|++|||+.+.+  ..+...+|+.  .+..+.|.|.|.+..
T Consensus       366 V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~~  423 (428)
T TIGR02037       366 VTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGAT  423 (428)
T ss_pred             EEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            99997  5666665 99999999999999975  4567777775  467899999998754

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG1892|consensus

Probab=99.11  E-value=9.7e-11  Score=135.12  Aligned_cols=101  Identities=51%  Similarity=0.774  Sum_probs=88.9

Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCC
Q psy2533         217 SSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGD  294 (684)
Q Consensus       217 ~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GD  294 (684)
                      ..+.|+|. +|+|++|..+.|-|                              ....||||++|.  |+|+.+|||..||
T Consensus       935 ~~vtL~Kn-nGmGLSIVAAkGaG------------------------------q~klGIYvKsVV~GgaAd~DGRL~aGD  983 (1629)
T KOG1892|consen  935 ITVTLKKN-NGMGLSIVAAKGAG------------------------------QRKLGIYVKSVVEGGAADHDGRLEAGD  983 (1629)
T ss_pred             EEEEEecc-CCceEEEEeeccCC------------------------------ccccceEEEEeccCCccccccccccCc
Confidence            34566666 89999987554321                              246799999997  8999999999999


Q ss_pred             EEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccccccccccCCCCCcc
Q psy2533         295 QLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVM  348 (684)
Q Consensus       295 qIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~~~~~~~~~psP~~  348 (684)
                      +||.|||.+|.|++.+.|+.++..+|..|+|.|.+.+++|+.+++++.+|+|.+
T Consensus       984 QLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKqgAiyhGLatlL~qpsP~~ 1037 (1629)
T KOG1892|consen  984 QLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQGAIYHGLATLLGQPSPTT 1037 (1629)
T ss_pred             eeeeecCcccccccHHHHHHHHhccCCeEEEehhhhhhHHHHHHHHhcCCCcch
Confidence            999999999999999999999999999999999999999999999999888877

>PRK10942 serine endoprotease; Provisional

Probab=99.01  E-value=4.1e-09  Score=118.47  Aligned_cols=153  Identities=18%  Similarity=0.256  Sum_probs=101.3

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYHGLATLLSQPSPVM  196 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~~~~~stl~s~psP~~  196 (684)
                      .|++|..|.+++||+++| |++||+|++|||..+.+.  .+....+..  .+..+.|.|.|.........++...  +..
T Consensus       311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~--~~~  385 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQS--SQN  385 (473)
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcC--ccc
Confidence            489999999999999999 999999999999999875  555555543  4778999999987432221111000  000


Q ss_pred             ccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcE
Q psy2533         197 TRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERF  276 (684)
Q Consensus       197 ~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIF  276 (684)
                      .                       .......+|+..            ..+..                   .....|++
T Consensus       386 ~-----------------------~~~~~~~lGl~g------------~~l~~-------------------~~~~~gvv  411 (473)
T PRK10942        386 Q-----------------------VDSSNIFNGIEG------------AELSN-------------------KGGDKGVV  411 (473)
T ss_pred             c-----------------------ccccccccccee------------eeccc-------------------ccCCCCeE
Confidence            0                       000000011110            00000                   00113788


Q ss_pred             EEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         277 YQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       277 V~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      |..|.  ++|++.| |++||+|++|||+.+.++  ++...++...+..+.|.|.|.+..
T Consensus       412 V~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g~~  467 (473)
T PRK10942        412 VDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGDSS  467 (473)
T ss_pred             EEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence            88886  5666655 999999999999999874  577788887778899999998754

>PRK10139 serine endoprotease; Provisional

Probab=99.00  E-value=5.3e-09  Score=117.06  Aligned_cols=156  Identities=19%  Similarity=0.242  Sum_probs=101.7

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYHGLATLLSQPSPVM  196 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~~~~~stl~s~psP~~  196 (684)
                      .|++|..|.+++||+++| |++||+|++|||..+.+  ..+....|..  .+..+.|+|.|.........++..  .+..
T Consensus       290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~--~~~~  364 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT--STSS  364 (455)
T ss_pred             CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECC--CCCc
Confidence            489999999999999999 99999999999999986  4666666654  577899999997743222111100  0000


Q ss_pred             ccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcE
Q psy2533         197 TRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERF  276 (684)
Q Consensus       197 ~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIF  276 (684)
                      .          ..          .........|+.+.            +   ..     +           .....|++
T Consensus       365 ~----------~~----------~~~~~~~~~g~~l~------------~---~~-----~-----------~~~~~Gv~  393 (455)
T PRK10139        365 S----------AS----------AEMITPALQGATLS------------D---GQ-----L-----------KDGTKGIK  393 (455)
T ss_pred             c----------cc----------cccccccccccEec------------c---cc-----c-----------ccCCCceE
Confidence            0          00          00000000011110            0   00     0           01124788


Q ss_pred             EEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         277 YQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       277 V~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      |..|.  ++|++.| |++||+|++|||+.+.++  ++...+|+..+..+.|.|.|.+..
T Consensus       394 V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~  449 (455)
T PRK10139        394 IDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGNES  449 (455)
T ss_pred             EEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence            88887  5666655 999999999999999764  567777777667899999998754

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.97  E-value=5.1e-09  Score=88.40  Aligned_cols=80  Identities=33%  Similarity=0.520  Sum_probs=69.1

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      +.+.+.+....+|||.+.++...   ..+++|..|.+++||+..| |++||+|++|||.++.++++.++..+|+.....+
T Consensus         2 ~~~~l~~~~~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v   77 (82)
T cd00992           2 RTVTLRKDPGGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEV   77 (82)
T ss_pred             EEEEEEeCCCCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeE
Confidence            45677777789999999876432   2479999999999999988 9999999999999999999999999999887777


Q ss_pred             EEEE
Q psy2533         172 TLEI  175 (684)
Q Consensus       172 ~LvV  175 (684)
                      .|.|
T Consensus        78 ~l~v   81 (82)
T cd00992          78 TLTV   81 (82)
T ss_pred             EEEE
Confidence            7766

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.94  E-value=7.5e-09  Score=115.51  Aligned_cols=151  Identities=23%  Similarity=0.235  Sum_probs=94.8

Q ss_pred             EEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCccccCC
Q psy2533         121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQ  200 (684)
Q Consensus       121 IfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~  200 (684)
                      -+|..|.++|||+++| |++||+|++|||.++.+...-...-..+..++.+.++|.|.+.......++...+.+..    
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~----  202 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFE----  202 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccC----
Confidence            4789999999999999 99999999999999988644333323334467899999998754332222211110000    


Q ss_pred             CccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEec
Q psy2533         201 VKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNL  280 (684)
Q Consensus       201 ~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI  280 (684)
                              ...          .....++|+.              +.                      ....+..|..|
T Consensus       203 --------~~~----------~~~~~~lGl~--------------~~----------------------~~~~~~vV~~V  228 (449)
T PRK10779        203 --------PDK----------QDPVSSLGIR--------------PR----------------------GPQIEPVLAEV  228 (449)
T ss_pred             --------ccc----------cchhhccccc--------------cc----------------------CCCcCcEEEee
Confidence                    000          0000111110              00                      00112456666


Q ss_pred             c--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCcc
Q psy2533         281 S--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAI  333 (684)
Q Consensus       281 ~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~~  333 (684)
                      .  ++|++.| |++||+|++|||+.+.+.  ++...+++. .+..+.|.|.|.+..
T Consensus       229 ~~~SpA~~AG-L~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~  281 (449)
T PRK10779        229 QPNSAASKAG-LQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGSP  281 (449)
T ss_pred             CCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCEE
Confidence            5  5666654 999999999999999754  456666655 456899999998754

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.93  E-value=1.1e-08  Score=86.25  Aligned_cols=82  Identities=29%  Similarity=0.438  Sum_probs=70.3

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      ..+.+.+.. ..|||.+..+....   .+++|..|.+++||++.| |++||+|++|||..+.++++.+.+.+++..+..+
T Consensus         3 ~~~~~~~~~-~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~   77 (85)
T smart00228        3 RLVELEKGG-GGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKV   77 (85)
T ss_pred             EEEEEEECC-CcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            456666666 89999998653221   479999999999999999 9999999999999999999999999999887789


Q ss_pred             EEEEEec
Q psy2533         172 TLEIAKQ  178 (684)
Q Consensus       172 ~LvV~R~  178 (684)
                      .|.+.|.
T Consensus        78 ~l~i~r~   84 (85)
T smart00228       78 TLTVLRG   84 (85)
T ss_pred             EEEEEeC
Confidence            9998775

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3553|consensus

Probab=98.91  E-value=3.6e-10  Score=101.62  Aligned_cols=92  Identities=18%  Similarity=0.330  Sum_probs=75.6

Q ss_pred             CCCCCceEEEEEecC---CC-----cccEEEEeccCCC-------CCcccEEEEEecCCChhcccCccccCCeeeecCCe
Q psy2533          86 RLDSSMKSHSVRDML---RQ-----EAKLSEMSEEGAG-------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQ  150 (684)
Q Consensus        86 ~~~s~~~~V~v~k~~---~~-----GLGfsI~GG~~~~-------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~  150 (684)
                      ..+|-...|++.|..   ..     -+||.|-||.+.+       ..+.||||++|.+||||+.+| |+.+|.||+|||.
T Consensus        11 aveclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~   89 (124)
T KOG3553|consen   11 AVECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGW   89 (124)
T ss_pred             ceEEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCc
Confidence            445666677776654   12     3899999997755       246799999999999999999 9999999999999


Q ss_pred             ecCCCCHHHHHHHHHcCCCEEEEEEEecC
Q psy2533         151 SLVGITQEKAAEYLVRTGPIVTLEIAKQG  179 (684)
Q Consensus       151 sl~g~sh~eAV~lLk~sg~~V~LvV~R~~  179 (684)
                      ++.-++|.+|+..|++. ..++|.|.|..
T Consensus        90 DfTMvTHd~Avk~i~k~-~vl~mLVaR~~  117 (124)
T KOG3553|consen   90 DFTMVTHDQAVKRITKE-EVLRMLVARQS  117 (124)
T ss_pred             eeEEEEhHHHHHHhhHh-HHHHHHHHhhc
Confidence            99999999999999884 55677777654

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.82  E-value=1.9e-08  Score=82.89  Aligned_cols=68  Identities=34%  Similarity=0.418  Sum_probs=60.2

Q ss_pred             CcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC-CEEEEEE
Q psy2533         102 QEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIVTLEI  175 (684)
Q Consensus       102 ~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg-~~V~LvV  175 (684)
                      .+|||.+.++.+     .+++|..|.+++||+..| |++||+|++|||.++.++++.++..+|+... ..|.|.|
T Consensus         1 ~~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           1 GGLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            368999986543     379999999999999988 9999999999999999999999999999874 7788876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.77  E-value=1.4e-08  Score=86.62  Aligned_cols=55  Identities=25%  Similarity=0.494  Sum_probs=51.4

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA  328 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~  328 (684)
                      .++||.+|.  |+|++.| |++||+|++|||+++.++++.+++.+|+.++..|+|+|.
T Consensus        25 ~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~   81 (81)
T PF00595_consen   25 KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ   81 (81)
T ss_dssp             EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred             CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence            578999997  7889988 999999999999999999999999999999999999884

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3571|consensus

Probab=98.71  E-value=3.6e-08  Score=108.95  Aligned_cols=89  Identities=24%  Similarity=0.368  Sum_probs=73.5

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC---
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT---  167 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s---  167 (684)
                      ..+|.|--+.-.-|||+|+|- .+..++.||||..|.+||+.+.+|||.+||.||+||.+++++|+..+||..|+.+   
T Consensus       250 IITV~LnMe~vnfLGiSivgq-sn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~  328 (626)
T KOG3571|consen  250 IITVTLNMETVNFLGISIVGQ-SNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR  328 (626)
T ss_pred             EEEEEecccccccceeEeecc-cCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence            344444444456699999973 3344677999999999999999999999999999999999999999999999965   


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      ...++|+|...-.
T Consensus       329 ~gPi~ltvAk~~D  341 (626)
T KOG3571|consen  329 PGPIKLTVAKCWD  341 (626)
T ss_pred             CCCeEEEEeeccC
Confidence            5569999987643

>KOG3550|consensus

Probab=98.67  E-value=4.6e-08  Score=94.04  Aligned_cols=61  Identities=30%  Similarity=0.379  Sum_probs=55.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|||..|+  |.|++.|+|+.||+||+|||+++++--|+.|+.+||.+-+.|.|+|......
T Consensus       115 spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvrytpkv  177 (207)
T KOG3550|consen  115 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRYTPKV  177 (207)
T ss_pred             CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEecChHH
Confidence            458898887  7999999999999999999999999999999999999999999999765433

>TIGR00054 RIP metalloprotease RseP

Probab=98.64  E-value=2.4e-07  Score=102.87  Aligned_cols=133  Identities=17%  Similarity=0.275  Sum_probs=91.7

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCcccc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTR  198 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s  198 (684)
                      .+.+|..|.++|||+++| |++||+|++|||..+.+.  .+....+....+.+.+.|.|........             
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g~~~~l~-------------  191 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAERENWTFE-------------  191 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEecCceEec-------------
Confidence            467899999999999999 999999999999998765  5555555444477888888864321000             


Q ss_pred             CCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEE
Q psy2533         199 GQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQ  278 (684)
Q Consensus       199 ~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~  278 (684)
                                 .         .       +++  ...                                  ....+..|.
T Consensus       192 -----------v---------~-------l~~--~~~----------------------------------~~~~g~vV~  208 (420)
T TIGR00054       192 -----------V---------M-------KEL--IPR----------------------------------GPKIEPVLS  208 (420)
T ss_pred             -----------c---------c-------ccc--eec----------------------------------CCCcCcEEE
Confidence                       0         0       000  000                                  000134555


Q ss_pred             ecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCcc
Q psy2533         279 NLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAI  333 (684)
Q Consensus       279 sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~~  333 (684)
                      ++.  ++|++. +|++||+|++|||+.+.+  .++....++. .+..+.|.|.|.+..
T Consensus       209 ~V~~~SpA~~a-GL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~  263 (420)
T TIGR00054       209 DVTPNSPAEKA-GLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGET  263 (420)
T ss_pred             EECCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCEE
Confidence            665  456655 499999999999999975  4577777766 456799999988754

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.57  E-value=1.4e-07  Score=80.99  Aligned_cols=73  Identities=26%  Similarity=0.434  Sum_probs=57.7

Q ss_pred             cccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCc
Q psy2533         103 EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGA  180 (684)
Q Consensus       103 GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~  180 (684)
                      +||+.+..-..    ..+++|..|.++|||+++| |++||+|++|||..+.+  ..+....|.  ..+..|.|.|.|...
T Consensus         2 ~lGv~~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g~   74 (82)
T PF13180_consen    2 GLGVTVQNLSD----TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDGE   74 (82)
T ss_dssp             E-SEEEEECSC----SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred             EECeEEEEccC----CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            57888875332    2479999999999999999 99999999999999955  466666664  458899999999876


Q ss_pred             cc
Q psy2533         181 IY  182 (684)
Q Consensus       181 ~~  182 (684)
                      ..
T Consensus        75 ~~   76 (82)
T PF13180_consen   75 EL   76 (82)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

...

>KOG3551|consensus

Probab=98.52  E-value=4.5e-07  Score=97.89  Aligned_cols=58  Identities=29%  Similarity=0.389  Sum_probs=51.5

Q ss_pred             CCCcEEEecc-h-hhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         272 DPERFYQNLS-V-YRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       272 d~GIFV~sI~-G-aAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      ...|.|.+|+ | +|++.+.|..||.||+|||.++.+.||+|||++||.+|..|-|.|.-
T Consensus       109 kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy  168 (506)
T KOG3551|consen  109 KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKY  168 (506)
T ss_pred             CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeee
Confidence            4456666776 4 78999999999999999999999999999999999999999998874

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.44  E-value=8.6e-07  Score=75.72  Aligned_cols=70  Identities=27%  Similarity=0.452  Sum_probs=60.4

Q ss_pred             CcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEec
Q psy2533         102 QEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQ  178 (684)
Q Consensus       102 ~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~  178 (684)
                      .+||+.+.-.      ..+++|..|.+++||++.| |++||+|++|||..+.+.++.++..+++. .+..+.|.|.|.
T Consensus         2 ~~lG~~~~~~------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKYD------DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEEc------CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            4788888642      2379999999999999998 99999999999999999988999888875 467899999886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3651|consensus

Probab=98.40  E-value=8.8e-07  Score=93.22  Aligned_cols=84  Identities=20%  Similarity=0.243  Sum_probs=74.9

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      ...|.+.|...+-+||+|-||...+   +.+||-.|..+.||+++|+|+.||.|++|||+++.|.+..++.++|.-+-+.
T Consensus         5 ~~~v~ltKD~~nliGISIGGGapyC---PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~e   81 (429)
T KOG3651|consen    5 SETVELTKDEKNLIGISIGGGAPYC---PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNE   81 (429)
T ss_pred             cCcEEEeeccccceeEEecCCCCcC---CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccc
Confidence            3468888888889999998876554   5799999999999999999999999999999999999999999999998888


Q ss_pred             EEEEEEe
Q psy2533         171 VTLEIAK  177 (684)
Q Consensus       171 V~LvV~R  177 (684)
                      |.+.+-.
T Consensus        82 V~IhyNK   88 (429)
T KOG3651|consen   82 VKIHYNK   88 (429)
T ss_pred             eEEEehh
Confidence            8877643

>KOG3552|consensus

Probab=98.39  E-value=2.9e-07  Score=107.19  Aligned_cols=79  Identities=19%  Similarity=0.341  Sum_probs=67.4

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      +..+.|.+.+...-||||  +.|       .||+|..|.+|||+  .|+|++||+||+|||.++..++.+.++.+++.|.
T Consensus        54 ~~pr~vq~~r~~~lGFgf--vag-------rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace  122 (1298)
T KOG3552|consen   54 WEPRQVQLQRNASLGFGF--VAG-------RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACE  122 (1298)
T ss_pred             Ccchhhhhhcccccccee--ecC-------CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence            346667776655555555  444       37999999999999  6999999999999999999999999999999999


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                      ..|.|+|++.
T Consensus       123 ~sv~ltV~qP  132 (1298)
T KOG3552|consen  123 SSVNLTVCQP  132 (1298)
T ss_pred             hhcceEEecc
Confidence            9999999984

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.11  E-value=1.2e-05  Score=67.58  Aligned_cols=57  Identities=28%  Similarity=0.443  Sum_probs=51.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+.+.++++.+...+++..+..+.|.+.|+
T Consensus        26 ~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~   84 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG   84 (85)
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            578999998  6788877 99999999999999999999999999988888999999875

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3549|consensus

Probab=98.07  E-value=7.2e-06  Score=87.85  Aligned_cols=57  Identities=23%  Similarity=0.341  Sum_probs=51.2

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .+.|..|.  -+|+..|.|-+||.||.|||+.++..+|+|++.+|+++|+.|+|+|..-
T Consensus        81 PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~l  139 (505)
T KOG3549|consen   81 PVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVKHL  139 (505)
T ss_pred             cEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeHhh
Confidence            35566666  6889999999999999999999999999999999999999999999653

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.05  E-value=1.8e-05  Score=66.88  Aligned_cols=68  Identities=24%  Similarity=0.251  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         104 AKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       104 LGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      ||+.+...      ..+++|..|.+++||+..| |++||+|++|||..+.+  ..++...+ ..+..+.|++.|....
T Consensus         3 ~G~~~~~~------~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~~   70 (80)
T cd00990           3 LGLTLDKE------EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDRL   70 (80)
T ss_pred             ccEEEEcc------CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCEE
Confidence            67777421      2369999999999999999 99999999999999876  33333332 2467899999887643

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.03  E-value=1.8e-05  Score=67.76  Aligned_cols=60  Identities=25%  Similarity=0.424  Sum_probs=51.5

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV~R~~~~  181 (684)
                      .|++|..|.+++||+..| |++||.|++|||..+.+  ..+...+|...  +..+.|.+.|....
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g~~   71 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPSTTK   71 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence            479999999999999999 99999999999999984  56777788753  67899999987643

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.01  E-value=2.2e-05  Score=64.60  Aligned_cols=54  Identities=30%  Similarity=0.356  Sum_probs=46.6

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC-CeEEEEE
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIVTLEI  327 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg-~~VtL~V  327 (684)
                      .+++|..+.  ++|+. ++|++||+|++|||.++.+++++++..+|+... ..|+|.|
T Consensus        13 ~~~~V~~v~~~s~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          13 GGVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCEEEEEeCCCCHHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            478888887  56665 569999999999999999999999999999865 6788876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3606|consensus

Probab=98.00  E-value=9.2e-06  Score=84.69  Aligned_cols=85  Identities=19%  Similarity=0.346  Sum_probs=68.4

Q ss_pred             ceEEEEEecC-CCcccEEEEeccCCC------CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          91 MKSHSVRDML-RQEAKLSEMSEEGAG------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        91 ~~~V~v~k~~-~~GLGfsI~GG~~~~------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      -+.|.+.|-+ ...|||-|.-|....      ...+||||+++.|||.|...|.|.+.|.||+|||+.|.+.+.+++..+
T Consensus       159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDM  238 (358)
T KOG3606|consen  159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDM  238 (358)
T ss_pred             hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHH
Confidence            3455565544 568999999874422      135699999999999999999999999999999999999999999999


Q ss_pred             HHcCCCEEEEEE
Q psy2533         164 LVRTGPIVTLEI  175 (684)
Q Consensus       164 Lk~sg~~V~LvV  175 (684)
                      +-....-+-++|
T Consensus       239 MvANshNLIiTV  250 (358)
T KOG3606|consen  239 MVANSHNLIITV  250 (358)
T ss_pred             HhhcccceEEEe
Confidence            876655555555

>KOG3571|consensus

Probab=97.95  E-value=1.4e-05  Score=88.89  Aligned_cols=61  Identities=23%  Similarity=0.353  Sum_probs=54.9

Q ss_pred             CCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC---CCeEEEEEEe
Q psy2533         269 APADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT---GPIVTLEIAK  329 (684)
Q Consensus       269 ~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s---g~~VtL~V~R  329 (684)
                      ...|.||||-+|.  |+.|.+|||.+||+||.||.+++++|+..+||..|++.   ...++|+|+.
T Consensus       273 ~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk  338 (626)
T KOG3571|consen  273 ARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAK  338 (626)
T ss_pred             cCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEee
Confidence            3468899999998  89999999999999999999999999999999999985   4458888875

>KOG0609|consensus

Probab=97.95  E-value=2.2e-05  Score=88.34  Aligned_cols=85  Identities=22%  Similarity=0.353  Sum_probs=76.2

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      .-++.|.+.+..+..||.+|.--.+     ..+||.+|..||.|++.|.|++||.|++|||+++.+....++..+|+.+.
T Consensus       121 ~~vriv~i~k~~~eplG~Tik~~e~-----~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~  195 (542)
T KOG0609|consen  121 EAVRIVRIVKNTGEPLGATIRVEED-----TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR  195 (542)
T ss_pred             ceeEEEEEeecCCCccceEEEeccC-----CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence            4578888999999999999984322     25999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                      +.++++|.-.
T Consensus       196 G~itfkiiP~  205 (542)
T KOG0609|consen  196 GSITFKIIPS  205 (542)
T ss_pred             CcEEEEEccc
Confidence            9999999654

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=97.93  E-value=3.3e-05  Score=85.17  Aligned_cols=80  Identities=25%  Similarity=0.372  Sum_probs=63.4

Q ss_pred             CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEec
Q psy2533         100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQ  178 (684)
Q Consensus       100 ~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~  178 (684)
                      ...|+|+.+.-..+......+++|..|.++|||+++| |++||+|++|||.++.+.+..++..+|+. .+..|.|+|.|.
T Consensus        83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~  161 (389)
T PLN00049         83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG  161 (389)
T ss_pred             CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence            3457888876422211111368999999999999999 99999999999999999988888888875 467899999987


Q ss_pred             Cc
Q psy2533         179 GA  180 (684)
Q Consensus       179 ~~  180 (684)
                      ..
T Consensus       162 g~  163 (389)
T PLN00049        162 PE  163 (389)
T ss_pred             CE
Confidence            54

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=97.90  E-value=4.5e-05  Score=64.31  Aligned_cols=54  Identities=35%  Similarity=0.544  Sum_probs=46.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEE
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI  327 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V  327 (684)
                      .|++|..|.  ++|++ ++|++||+|++|||..+.++++.++..+|+.....++|.|
T Consensus        26 ~~~~V~~v~~~s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992          26 GGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             CCeEEEEECCCChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence            468888887  56666 6799999999999999999999999999998777777776

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.89  E-value=6.2e-05  Score=63.24  Aligned_cols=59  Identities=31%  Similarity=0.526  Sum_probs=50.2

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEecCc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGA  180 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~~~  180 (684)
                      .+++|..|.++++|++.| |++||.|++|||.++.+  ..++..+|... +..+.+.+.|...
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~~   71 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE   71 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECCE
Confidence            368999999999999999 99999999999999985  56777777665 6678999988653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.87  E-value=6.1e-05  Score=64.09  Aligned_cols=58  Identities=33%  Similarity=0.626  Sum_probs=48.9

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcc
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  181 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~  181 (684)
                      |++|..|.+++||+. | |++||.|++|||..+.+  ..+...+|..  .+..+.|.+.|....
T Consensus         9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~~   68 (79)
T cd00986           9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEKE   68 (79)
T ss_pred             CEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            689999999999986 8 99999999999999975  5667777764  467899999887654

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3542|consensus

Probab=97.86  E-value=2.2e-05  Score=89.65  Aligned_cols=85  Identities=26%  Similarity=0.416  Sum_probs=73.6

Q ss_pred             CceEEEEEe-cCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          90 SMKSHSVRD-MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        90 ~~~~V~v~k-~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ..+.|++.| .....|-|.+.||...+   -||||..|.||+-|++.| |+.||+||+|||.+.++++...|+.+|+.. 
T Consensus       535 K~RqviLtk~sre~pl~f~L~GGsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-  609 (1283)
T KOG3542|consen  535 KPRQVILTKASREDPLMFRLVGGSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-  609 (1283)
T ss_pred             cceeEEEecccccCCceeEeccCcccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-
Confidence            467788887 45668999999997766   489999999999999999 999999999999999999999999999876 


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..++|+|....
T Consensus       610 thLtltvKtNv  620 (1283)
T KOG3542|consen  610 THLTLTVKTNV  620 (1283)
T ss_pred             ceEEEEEecce
Confidence            45777776543

>KOG4371|consensus

Probab=97.86  E-value=6.1e-05  Score=89.45  Aligned_cols=171  Identities=21%  Similarity=0.258  Sum_probs=118.5

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~  180 (684)
                      .+.||..|+.-.      ..+.|+.....+.-.+-. |++||.|+.|||+-+.+.-|.+|+.+++..++.|.|-|+|.++
T Consensus      1157 ~~~l~~~~a~~~------~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 1229 (1332)
T KOG4371|consen 1157 EGSLGVQIASLS------GRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPP 1229 (1332)
T ss_pred             CCCCCceeccCc------cceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCc
Confidence            367999987432      246777777776655555 9999999999999999999999999999999999999999887


Q ss_pred             cccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCC
Q psy2533         181 IYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQA  260 (684)
Q Consensus       181 ~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~  260 (684)
                      .+....-....     +       .. .+.     .....+.+-..|+|+++.                           
T Consensus      1230 ~~~d~~~~s~~-----~-------~~-~~l-----~~~~~~~~p~~~~~~~~~--------------------------- 1264 (1332)
T KOG4371|consen 1230 AYSDQHHASST-----S-------AS-APL-----ISVMLLKKPMATLGLSLA--------------------------- 1264 (1332)
T ss_pred             ccccchhhhhh-----c-------cc-chh-----hhheeeeccccccccccc---------------------------
Confidence            64332110000     0       00 000     001122233334444432                           


Q ss_pred             CCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         261 SPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       261 sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                             ......|+|+..|.  .+|.-.|.||+||+++..+|+++.+.+.....+-++---+.|.+.|.|.
T Consensus      1265 -------~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1265 -------KRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred             -------ccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhh
Confidence                   11234578887776  5677889999999999999999999998887777776666777777654

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.82  E-value=5.5e-05  Score=81.52  Aligned_cols=73  Identities=26%  Similarity=0.468  Sum_probs=61.1

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEecC
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQG  179 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~~  179 (684)
                      -.+||+.+.-.      ..+++|..|.++|||+++| |++||+|++|||.++.+.+..++..+|+. .+..+.|+|.|..
T Consensus        50 ~~~lG~~~~~~------~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  122 (334)
T TIGR00225        50 LEGIGIQVGMD------DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG  122 (334)
T ss_pred             eEEEEEEEEEE------CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence            35788888632      1269999999999999999 99999999999999999887788888765 5778999999875


Q ss_pred             c
Q psy2533         180 A  180 (684)
Q Consensus       180 ~  180 (684)
                      .
T Consensus       123 ~  123 (334)
T TIGR00225       123 K  123 (334)
T ss_pred             C
Confidence            4

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.80  E-value=4.8e-05  Score=84.55  Aligned_cols=74  Identities=27%  Similarity=0.438  Sum_probs=65.3

Q ss_pred             CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEec
Q psy2533         100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQ  178 (684)
Q Consensus       100 ~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~  178 (684)
                      .-.|+|+.|.-...     .++.|.++.+|+||+++| |++||.|+.|||.++.+++..+|+..|+.. |..|+|+|.|.
T Consensus        98 ~~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793          98 EFGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             cccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            56789999875332     368999999999999999 999999999999999999999999999865 77899999997


Q ss_pred             C
Q psy2533         179 G  179 (684)
Q Consensus       179 ~  179 (684)
                      .
T Consensus       172 ~  172 (406)
T COG0793         172 G  172 (406)
T ss_pred             C
Confidence            3

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.78  E-value=5.7e-05  Score=64.76  Aligned_cols=59  Identities=31%  Similarity=0.514  Sum_probs=49.5

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEEEecCc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA  180 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV~R~~~  180 (684)
                      .+++|..|.+++||++.| |++||.|++|||..+.+.  .+...++...  +..+.|.+.|...
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g~   84 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGGK   84 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            379999999999999999 999999999999999765  4556666554  7789999988763

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=97.71  E-value=5.5e-05  Score=65.01  Aligned_cols=59  Identities=24%  Similarity=0.369  Sum_probs=46.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      .|++|.++.  ++|++.| |++||+|++|||..+.+.  .+...+|..  .+..|+|.|.|.+...
T Consensus        14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~   76 (82)
T PF13180_consen   14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDGEEL   76 (82)
T ss_dssp             SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETTEEE
T ss_pred             CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            488999987  7888877 999999999999999554  555666643  5778999999987543

...

>KOG3553|consensus

Probab=97.65  E-value=9.3e-06  Score=73.63  Aligned_cols=58  Identities=21%  Similarity=0.400  Sum_probs=49.9

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .+.||||..+.  +||+..| ||.+|.||.|||.++.=+||++|+..|+. ...+.++|.|.
T Consensus        57 tD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~  116 (124)
T KOG3553|consen   57 TDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQ  116 (124)
T ss_pred             CCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhh
Confidence            57899999997  6777776 99999999999999999999999999987 34567777665

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=97.64  E-value=0.00021  Score=60.96  Aligned_cols=57  Identities=19%  Similarity=0.343  Sum_probs=48.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~  330 (684)
                      .+++|..|.  ++|++. +|++||+|++|||..+.+.++.++..+++. .+..+.|.+.|.
T Consensus        13 ~~~~V~~v~~~s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988          13 GGLVITSVLPGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             CeEEEEEecCCCCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            467888886  577776 599999999999999999988999888875 467899999887

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.63  E-value=0.00011  Score=86.33  Aligned_cols=72  Identities=22%  Similarity=0.307  Sum_probs=58.9

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCC-----eecCCCCHHHHHHHHHcC-CCEEEEE
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDG-----QSLVGITQEKAAEYLVRT-GPIVTLE  174 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG-----~sl~g~sh~eAV~lLk~s-g~~V~Lv  174 (684)
                      -.|+|+.+.-..      ..++|..|.|||||++++.|++||+|++|||     .++.+++..+++.+|+.. |..|+|+
T Consensus       243 ~~GIGa~l~~~~------~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~Lt  316 (667)
T PRK11186        243 LEGIGAVLQMDD------DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLE  316 (667)
T ss_pred             eeEEEEEEEEeC------CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEE
Confidence            457788775321      2589999999999999844999999999994     467789999999999854 7789999


Q ss_pred             EEec
Q psy2533         175 IAKQ  178 (684)
Q Consensus       175 V~R~  178 (684)
                      |.|.
T Consensus       317 V~r~  320 (667)
T PRK11186        317 ILPA  320 (667)
T ss_pred             EEeC
Confidence            9884

>KOG3651|consensus

Probab=97.54  E-value=0.00015  Score=76.79  Aligned_cols=60  Identities=23%  Similarity=0.367  Sum_probs=55.4

Q ss_pred             CCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         270 PADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       270 ~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      +..|=+||..|+  .||+++|+|+.||.|++|||+++.|.+-.+++.+|..+-+.|++....
T Consensus        27 pyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyNK   88 (429)
T KOG3651|consen   27 PYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYNK   88 (429)
T ss_pred             CcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEehh
Confidence            456778999998  799999999999999999999999999999999999999999998765

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.45  E-value=0.00061  Score=58.40  Aligned_cols=59  Identities=19%  Similarity=0.279  Sum_probs=46.1

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA  332 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~  332 (684)
                      ...|++|..+.  ++|++. +|++||+|++|||..+.++  .+...+|...  +..+.|.+.|.+.
T Consensus         8 ~~~Gv~V~~V~~~spa~~a-GL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g~   70 (79)
T cd00991           8 AVAGVVIVGVIVGSPAENA-VLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPSTT   70 (79)
T ss_pred             cCCcEEEEEECCCChHHhc-CCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECCE
Confidence            44688998887  566554 5999999999999999854  5677777653  6789999998764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG4407|consensus

Probab=97.36  E-value=0.00032  Score=84.85  Aligned_cols=135  Identities=15%  Similarity=0.128  Sum_probs=101.6

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCC----------------------CCcccEEEEEecCCChhcccCccccCCeeee
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAG----------------------QDRLGIYIKSVVKGGAADANGRLQAGDQLLK  146 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~----------------------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILa  146 (684)
                      .+.+.+.++|+++.||||++..=.-.+                      .....+|+..+..++|+..+| +.-||.|.-
T Consensus        44 ~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~  122 (1973)
T KOG4407|consen   44 IQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAG  122 (1973)
T ss_pred             CCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceee
Confidence            456677788899999999986421111                      112368999999999999999 999999999


Q ss_pred             cCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccccCCC
Q psy2533         147 VDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNN  226 (684)
Q Consensus       147 VNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~  226 (684)
                      |||..+.+.+ .....+++.....+                                                       
T Consensus       123 itG~e~~~~T-S~~~~~vk~~eT~~-------------------------------------------------------  146 (1973)
T KOG4407|consen  123 ITGLEPTSPT-SLPPYQVKAMETIF-------------------------------------------------------  146 (1973)
T ss_pred             ecccccCCCc-cccHHHHhhhhhhh-------------------------------------------------------
Confidence            9999888766 44444444443222                                                       


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEec
Q psy2533         227 GVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSL  304 (684)
Q Consensus       227 GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl  304 (684)
                                                                        |++|.  |+|.-. .|+.||+++.||....
T Consensus       147 --------------------------------------------------~~eV~~n~~~~~a-~LQ~~~~V~~v~~q~~  175 (1973)
T KOG4407|consen  147 --------------------------------------------------IKEVQANGPAHYA-NLQTGDRVLMVNNQPI  175 (1973)
T ss_pred             --------------------------------------------------hhhhccCChhHHH-hhhccceeEEeecCcc
Confidence                                                              22222  223333 4999999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         305 VGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       305 ~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .++...+++.+++.....++|.|....
T Consensus       176 A~i~~s~~~S~~~qt~~~~~~~~~P~~  202 (1973)
T KOG4407|consen  176 AGIAYSTIVSMIKQTPAVLTLHVVPKE  202 (1973)
T ss_pred             cchhhhhhhhhhccCCCCCCceecccc
Confidence            999999999999999999999998754

>KOG3606|consensus

Probab=97.24  E-value=0.001  Score=69.88  Aligned_cols=58  Identities=21%  Similarity=0.374  Sum_probs=52.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      -+||||..+.  |.|.-.|.|-+.|.+|+|||+.|.|.|.+++..|+.....-+-++|..
T Consensus       193 vpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkP  252 (358)
T KOG3606|consen  193 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKP  252 (358)
T ss_pred             cCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEecc
Confidence            4799999997  899999999999999999999999999999999998877777777754

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.20  E-value=0.0009  Score=70.41  Aligned_cols=73  Identities=22%  Similarity=0.238  Sum_probs=56.7

Q ss_pred             cccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCc
Q psy2533         103 EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGA  180 (684)
Q Consensus       103 GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~  180 (684)
                      .+|++..--.+   ...|+.|..+.++++|++.| |+.||+|++|||.++.+.  .++..++..  .++.+.|+|.|++.
T Consensus       178 ~lgi~p~~~~g---~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~  251 (259)
T TIGR01713       178 YIRLSPVMKND---KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQ  251 (259)
T ss_pred             eEeEEEEEeCC---ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCE
Confidence            45666543211   12489999999999999999 999999999999999874  556666665  35689999999875


Q ss_pred             c
Q psy2533         181 I  181 (684)
Q Consensus       181 ~  181 (684)
                      .
T Consensus       252 ~  252 (259)
T TIGR01713       252 R  252 (259)
T ss_pred             E
Confidence            4

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3605|consensus

Probab=97.16  E-value=0.0003  Score=80.56  Aligned_cols=71  Identities=24%  Similarity=0.409  Sum_probs=58.8

Q ss_pred             eEEEEEecC-CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          92 KSHSVRDML-RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        92 ~~V~v~k~~-~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .+|.|+|.. ..-|||+|.-|          +|.++..||.|+|-| +++|-||++|||.+|.-..|+..|.+|..+-+.
T Consensus       738 ~~V~I~RPd~kyQLGFSVQNG----------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE  806 (829)
T KOG3605|consen  738 TTVLIRRPDLRYQLGFSVQNG----------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE  806 (829)
T ss_pred             eEEEeecccchhhccceeeCc----------EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhh
Confidence            344444322 45799999843          788999999999998 999999999999999999999999999988666


Q ss_pred             EEE
Q psy2533         171 VTL  173 (684)
Q Consensus       171 V~L  173 (684)
                      |.+
T Consensus       807 IhM  809 (829)
T KOG3605|consen  807 IHM  809 (829)
T ss_pred             hhh
Confidence            655

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.15  E-value=0.0017  Score=55.16  Aligned_cols=58  Identities=21%  Similarity=0.405  Sum_probs=44.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      .|+.|..+.  ++|+. | |++||+|++|||..+.+  .++...+|..  .+..+.|.+.|.+..+
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~~~   69 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEKEL   69 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            367888877  56664 5 99999999999999875  4566677764  4678999999876543

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.13  E-value=0.0013  Score=56.30  Aligned_cols=57  Identities=23%  Similarity=0.394  Sum_probs=44.6

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~  332 (684)
                      .|++|..|.  ++|++.| |++||+|++|||..+.+..  +...++...  +..+.|.+.|.+.
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~--~~~~~l~~~~~~~~i~l~v~r~g~   84 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLRGGK   84 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECCE
Confidence            478888887  6777655 9999999999999998654  455566554  6789999988764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10898 serine endoprotease; Provisional

Probab=97.11  E-value=0.00097  Score=72.85  Aligned_cols=61  Identities=18%  Similarity=0.416  Sum_probs=50.0

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCccc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAIY  182 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~~~  182 (684)
                      .|++|..|.+++||++.| |++||+|++|||.++.+.  .+....|.  ..+..+.|.|.|.....
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~~~  341 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQL  341 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            589999999999999999 999999999999999764  33444443  45778999999987543

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.08  E-value=0.0013  Score=55.48  Aligned_cols=58  Identities=19%  Similarity=0.262  Sum_probs=41.9

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      +.++.|..|.  ++|++.| |++||+|++|||..+.+  ..+++..+ ..+..+.|.+.|.+..
T Consensus        11 ~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~~   70 (80)
T cd00990          11 EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDRL   70 (80)
T ss_pred             CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCEE
Confidence            3467888887  5666655 99999999999999876  23333322 2567899999887643

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.04  E-value=0.0034  Score=52.63  Aligned_cols=56  Identities=25%  Similarity=0.456  Sum_probs=42.6

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCCc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~~  332 (684)
                      .+.|..|.  ++|++.| |++||+|++|||..+.+.  .+...+|... +..+.|.+.|.+.
T Consensus        13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~~   71 (79)
T cd00989          13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNGE   71 (79)
T ss_pred             CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECCE
Confidence            35677776  5666655 999999999999999854  5676777664 6689999988664

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.02  E-value=0.0011  Score=72.34  Aligned_cols=60  Identities=30%  Similarity=0.512  Sum_probs=50.9

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.+++||++.| |++||+|++|||..+.+  ..+....|..  .+..+.|.|.|....
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g~~  339 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQGKQ  339 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            489999999999999999 99999999999999976  4555666653  578899999998754

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10942 serine endoprotease; Provisional

Probab=96.96  E-value=0.0017  Score=73.66  Aligned_cols=59  Identities=20%  Similarity=0.356  Sum_probs=53.0

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~  180 (684)
                      .+++|..|.++|+|++.| |++||+|++|||.++.+  ..+...+++..+..+.|+|.|...
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R~g~  466 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQRGDS  466 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence            479999999999999999 99999999999999987  577888888877889999999864

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=96.95  E-value=0.0017  Score=72.34  Aligned_cols=58  Identities=26%  Similarity=0.418  Sum_probs=51.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~  331 (684)
                      .+++|.+..  +||++.| |++||+|+.|||.++.+++..+|+..|+.. |..|+|.+.|.+
T Consensus       112 ~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~  172 (406)
T COG0793         112 GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG  172 (406)
T ss_pred             CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence            567777776  7899998 999999999999999999999999999885 568999999974

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=96.94  E-value=0.0014  Score=73.05  Aligned_cols=60  Identities=35%  Similarity=0.495  Sum_probs=52.4

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.+++||++.| |++||+|++|||.++.+  ..+...+|+.  .+..+.|.|.|....
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~~  423 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGAT  423 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            489999999999999999 99999999999999976  5677888875  377899999998653

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=96.94  E-value=0.0018  Score=73.11  Aligned_cols=59  Identities=29%  Similarity=0.431  Sum_probs=52.2

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~  180 (684)
                      .|++|..|.+++||++.| |++||+|++|||.++.+  ..+...+|++....+.|+|.|...
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~  448 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE  448 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence            479999999999999999 99999999999999966  577888887766789999998864

>TIGR00054 RIP metalloprotease RseP

Probab=96.67  E-value=0.0036  Score=69.92  Aligned_cols=60  Identities=17%  Similarity=0.367  Sum_probs=51.6

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~~~~  181 (684)
                      .++.|..|.+++||+++| |++||+|++|||.++.+  ..+....++.. +..+.+.|.|+...
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~  263 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGET  263 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCEE
Confidence            368999999999999999 99999999999999975  57788888764 56799999998754

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3938|consensus

Probab=96.66  E-value=0.0026  Score=66.69  Aligned_cols=80  Identities=24%  Similarity=0.322  Sum_probs=64.4

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--C
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--G  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g  168 (684)
                      .+.|.|.| ....||++|+-   ++  ..--||+.|.+||.-++--.+++||.|-+|||+++.++.|-++..+||..  +
T Consensus       127 ~kEv~v~K-sedalGlTITD---NG--~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg  200 (334)
T KOG3938|consen  127 AKEVEVVK-SEDALGLTITD---NG--AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG  200 (334)
T ss_pred             ceeEEEEe-cccccceEEee---CC--cceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence            45666765 45679999984   22  22479999999999999888999999999999999999999999999986  4


Q ss_pred             CEEEEEEE
Q psy2533         169 PIVTLEIA  176 (684)
Q Consensus       169 ~~V~LvV~  176 (684)
                      ...+|.+.
T Consensus       201 e~ftlrLi  208 (334)
T KOG3938|consen  201 ETFTLRLI  208 (334)
T ss_pred             CeeEEEee
Confidence            44455443

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=96.66  E-value=0.0051  Score=68.11  Aligned_cols=58  Identities=24%  Similarity=0.331  Sum_probs=49.1

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~  332 (684)
                      +++|..+.  ++|++.| |++||+|++|||+++.+++..++..+|+. .+..|.|.|.|.+.
T Consensus       103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~  163 (389)
T PLN00049        103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE  163 (389)
T ss_pred             cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            67787776  6777776 99999999999999999998888888875 56789999998754

>TIGR00225 prc C-terminal peptidase (prc)

Probab=96.59  E-value=0.005  Score=66.55  Aligned_cols=58  Identities=26%  Similarity=0.494  Sum_probs=48.1

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~  332 (684)
                      +++|..|.  ++|++.| |++||+|++|||..+.+++..++..++.. .+..|.|.|.|.+.
T Consensus        63 ~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~  123 (334)
T TIGR00225        63 EIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK  123 (334)
T ss_pred             EEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence            56777776  6777777 99999999999999999887888887765 56789999998754

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PRK11186 carboxy-terminal protease; Provisional

Probab=96.56  E-value=0.0045  Score=72.98  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=48.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECC-----EecCCCCHHHHHHHHHh-CCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDG-----QSLVGITQEKAAEYLVR-TGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG-----~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~  330 (684)
                      .+++|..|.  |||++.++|++||+|++||+     .++.+++..+++.+|+. .|..|+|.|.|.
T Consensus       255 ~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        255 DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            357777876  79999878999999999994     46778999999999987 466899999884

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=96.52  E-value=0.0052  Score=69.14  Aligned_cols=59  Identities=36%  Similarity=0.488  Sum_probs=50.4

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEecCcc
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAI  181 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~~~~  181 (684)
                      ++.|..|.++|||+++| |++||+|++|||..+.+  ..+....++. .+..+.++|.|++..
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~  281 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEIERQGSP  281 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCEEEEEEEECCEE
Confidence            47899999999999999 99999999999999964  5667777765 456899999998754

>KOG3552|consensus

Probab=96.47  E-value=0.0032  Score=74.79  Aligned_cols=44  Identities=27%  Similarity=0.506  Sum_probs=42.5

Q ss_pred             cCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       287 dGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .|.|++|||||+|||.+|.++..+.|+++++.+.+.|.|+|+++
T Consensus        89 ~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP  132 (1298)
T KOG3552|consen   89 IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP  132 (1298)
T ss_pred             cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence            68899999999999999999999999999999999999999986

>KOG0606|consensus

Probab=96.26  E-value=0.014  Score=71.11  Aligned_cols=80  Identities=23%  Similarity=0.330  Sum_probs=65.2

Q ss_pred             EEEecCCCcccEEEEe------ccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          95 SVRDMLRQEAKLSEMS------EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        95 ~v~k~~~~GLGfsI~G------G~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      +++.....+|||++..      +.+  .-..-..|..|.+|+||...| |+.||.|+.|||+++.++.|.+++++|-+.+
T Consensus       630 I~i~~~~~~yGft~~airVy~Gd~d--~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~g  706 (1205)
T KOG0606|consen  630 ITIHFSGKKYGFTLRAIRVYMGDKD--VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSG  706 (1205)
T ss_pred             eeeeccccccCceeeeEEEecCCcc--cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence            4456678899987643      222  112246788999999999999 9999999999999999999999999999999


Q ss_pred             CEEEEEEEe
Q psy2533         169 PIVTLEIAK  177 (684)
Q Consensus       169 ~~V~LvV~R  177 (684)
                      ..|.+.+.-
T Consensus       707 n~v~~~ttp  715 (1205)
T KOG0606|consen  707 NKVTLRTTP  715 (1205)
T ss_pred             CeeEEEeec
Confidence            998887753

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=96.18  E-value=0.016  Score=55.75  Aligned_cols=76  Identities=18%  Similarity=0.164  Sum_probs=52.7

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCcccc-CCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEec
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQA-GDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQ  178 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqv-GDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~  178 (684)
                      .+.||++|.-..-......++-|.+|.|+|||+.+| |.+ .|-|+.+++..+.+.  ++...++... +..+.|.|...
T Consensus        25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~L~Vyns  101 (138)
T PF04495_consen   25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQLYVYNS  101 (138)
T ss_dssp             SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EEEEEEET
T ss_pred             CCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHHHHcCCCcEEEEEEEC
Confidence            466999998765443345678999999999999999 887 699999999888854  4556666654 66799999765


Q ss_pred             C
Q psy2533         179 G  179 (684)
Q Consensus       179 ~  179 (684)
                      .
T Consensus       102 ~  102 (138)
T PF04495_consen  102 K  102 (138)
T ss_dssp             T
T ss_pred             C
Confidence            4

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.11  E-value=0.014  Score=66.51  Aligned_cols=71  Identities=23%  Similarity=0.221  Sum_probs=53.6

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~  180 (684)
                      ...||+.+..-      .....|+.|.+||||.++| |.+||.|++|||.+..-..        -+++..|.+.+.+.+.
T Consensus       450 ~~~LGl~v~~~------~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~--------~~~~d~i~v~~~~~~~  514 (558)
T COG3975         450 AYYLGLKVKSE------GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDR--------YKVNDKIQVHVFREGR  514 (558)
T ss_pred             CcccceEeccc------CCeeEEEecCCCChhHhcc-CCCccEEEEEcCccccccc--------cccccceEEEEccCCc
Confidence            45789888632      1268999999999999999 9999999999999221111        1457889999988887


Q ss_pred             cccccc
Q psy2533         181 IYHGLA  186 (684)
Q Consensus       181 ~~~~~s  186 (684)
                      +.....
T Consensus       515 L~e~~v  520 (558)
T COG3975         515 LREFLV  520 (558)
T ss_pred             eEEeec
Confidence            655433

>KOG0609|consensus

Probab=96.05  E-value=0.0069  Score=68.83  Aligned_cols=57  Identities=23%  Similarity=0.368  Sum_probs=53.3

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .+||..|.  |.|++.|.|++||.|++|||+++.+....++..+|+.+.+.++++|...
T Consensus       147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~  205 (542)
T KOG0609|consen  147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPS  205 (542)
T ss_pred             ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccc
Confidence            58888887  8999999999999999999999999999999999999999999999854

>KOG3542|consensus

Probab=95.78  E-value=0.0075  Score=69.71  Aligned_cols=60  Identities=28%  Similarity=0.396  Sum_probs=49.5

Q ss_pred             CCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         268 PAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       268 ~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      +...+.||||.+|.  +.|++.| |+.||+||+|||+++.+++...|+.+|+..- .++|.|.-
T Consensus       557 GsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt-hLtltvKt  618 (1283)
T KOG3542|consen  557 GSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT-HLTLTVKT  618 (1283)
T ss_pred             CccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc-eEEEEEec
Confidence            34567899999998  4667766 9999999999999999999999999998753 46666644

>KOG1738|consensus

Probab=95.74  E-value=0.019  Score=66.40  Aligned_cols=77  Identities=18%  Similarity=0.174  Sum_probs=67.4

Q ss_pred             cCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEec
Q psy2533          99 MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  178 (684)
Q Consensus        99 ~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~  178 (684)
                      .++.|||+-|-.-.     +..++|+.+.+++||+.++.|..||.|++||+..+.+..+.-.|..|+....-|.++|..+
T Consensus       210 kp~eglg~~I~Ssy-----dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKr  284 (638)
T KOG1738|consen  210 SPSEGLGLYIDSSY-----DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKR  284 (638)
T ss_pred             CcccCCceEEeeec-----CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeecc
Confidence            67889999997533     3468999999999999999999999999999999999999999999998877788887765


Q ss_pred             Cc
Q psy2533         179 GA  180 (684)
Q Consensus       179 ~~  180 (684)
                      ..
T Consensus       285 p~  286 (638)
T KOG1738|consen  285 PV  286 (638)
T ss_pred             CC
Confidence            53

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=95.66  E-value=0.022  Score=60.13  Aligned_cols=58  Identities=21%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~  333 (684)
                      .|+.|..+.  ++|++.| |++||+|++|||.++.+..  ++..++..  .+..++|.|.|.+..
T Consensus       191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~--~~~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPE--QAFQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCeEEEEEEECCEE
Confidence            466777765  4565555 9999999999999998753  55566655  456899999998753

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=95.27  E-value=0.034  Score=60.84  Aligned_cols=58  Identities=21%  Similarity=0.364  Sum_probs=45.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~  333 (684)
                      .|++|..|.  ++|++.| |++||+|++|||+.+.++  .+...++..  .++.|.|.|.|.+..
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~~  339 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGKQ  339 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            589999997  6777765 999999999999999764  355555553  577899999997653

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=95.24  E-value=0.021  Score=64.19  Aligned_cols=49  Identities=22%  Similarity=0.339  Sum_probs=40.2

Q ss_pred             EEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEE
Q psy2533         123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA  176 (684)
Q Consensus       123 Is~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~  176 (684)
                      |..|.||++|+..| |++||+|++|||..+.+  ..+....+.  +..+.|.|.
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~   50 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVL   50 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEE
Confidence            67899999999999 99999999999999965  455555553  456888886

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PRK10898 serine endoprotease; Provisional

Probab=95.24  E-value=0.034  Score=60.88  Aligned_cols=60  Identities=12%  Similarity=0.259  Sum_probs=45.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHH--hCCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk--~sg~~VtL~V~R~~~~~  334 (684)
                      ..|++|..|.  ++|++.| |++||+|++|||..+.+..  +....|.  ..++.+.|.|.|.+...
T Consensus       278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~--~l~~~l~~~~~g~~v~l~v~R~g~~~  341 (353)
T PRK10898        278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDKQL  341 (353)
T ss_pred             CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            3689999997  6777655 9999999999999997653  3334443  35678999999987543

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.047  Score=59.13  Aligned_cols=62  Identities=27%  Similarity=0.429  Sum_probs=50.2

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.++|||++.| |+.||.|+++||..+.+..-....-.....+..+.+.+.|....
T Consensus       270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~  331 (347)
T COG0265         270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKE  331 (347)
T ss_pred             CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEE
Confidence            468999999999999999 99999999999999987644433333334578999999998654

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=94.93  E-value=0.084  Score=59.03  Aligned_cols=70  Identities=23%  Similarity=0.442  Sum_probs=53.4

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEec--------CCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEE
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVV--------KGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIV  171 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~--------pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V  171 (684)
                      +..+|+.+.-        .||+|....        .++||+.+| |++||.|++|||.++..  ..++..+++.. +..+
T Consensus        95 G~~iGI~l~t--------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V  163 (402)
T TIGR02860        95 GQSIGVKLNT--------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAGGEKL  163 (402)
T ss_pred             CEEEEEEEec--------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeE
Confidence            4557777641        367775543        268999999 99999999999999976  47777888765 5679


Q ss_pred             EEEEEecCcc
Q psy2533         172 TLEIAKQGAI  181 (684)
Q Consensus       172 ~LvV~R~~~~  181 (684)
                      .|.|.|....
T Consensus       164 ~LtV~R~Ge~  173 (402)
T TIGR02860       164 TLTIERGGKI  173 (402)
T ss_pred             EEEEEECCEE
Confidence            9999987643

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG1421|consensus

Probab=94.66  E-value=0.13  Score=60.17  Aligned_cols=58  Identities=28%  Similarity=0.410  Sum_probs=48.3

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEecCcc
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAI  181 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~~~~  181 (684)
                      =+.|..|.++|||.+.  |++||.+|+||+..+.+  ...+.++|-. .|..+.|+|.|.+..
T Consensus       304 mLvV~~vL~~gpa~k~--Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rggqe  362 (955)
T KOG1421|consen  304 MLVVETVLPEGPAEKK--LEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRGGQE  362 (955)
T ss_pred             eEEEEEeccCCchhhc--cCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeCCEE
Confidence            3789999999999765  99999999999888765  4666677754 588899999999864

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=94.13  E-value=0.27  Score=44.05  Aligned_cols=59  Identities=22%  Similarity=0.410  Sum_probs=37.1

Q ss_pred             cEEEEEecCCC--------hhcccC-ccccCCeeeecCCeecCCCCHHHHHHHH-HcCCCEEEEEEEecCc
Q psy2533         120 GIYIKSVVKGG--------AADANG-RLQAGDQLLKVDGQSLVGITQEKAAEYL-VRTGPIVTLEIAKQGA  180 (684)
Q Consensus       120 gIfIs~V~pGG--------pA~r~G-rLqvGDrILaVNG~sl~g~sh~eAV~lL-k~sg~~V~LvV~R~~~  180 (684)
                      +..|.+|.+|-        |-..-| .+++||.|++|||+++..-.  ....+| .+++..|.|+|.+...
T Consensus        13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-STT
T ss_pred             EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCCC
Confidence            68899999984        433443 46799999999999997642  234444 4567899999988753

>KOG3129|consensus

Probab=93.76  E-value=0.12  Score=53.01  Aligned_cols=61  Identities=26%  Similarity=0.366  Sum_probs=44.3

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCC-HHHHHHHHHc-CCCEEEEEEEecCcc
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGIT-QEKAAEYLVR-TGPIVTLEIAKQGAI  181 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~s-h~eAV~lLk~-sg~~V~LvV~R~~~~  181 (684)
                      -++|..|.|+|||+.+| |++||.|+.+..+.-.+.. ........+. -+..+.+.|.|....
T Consensus       140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~  202 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK  202 (231)
T ss_pred             eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence            58999999999999999 9999999997665544443 2233333333 355688999888654

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=93.07  E-value=0.16  Score=54.33  Aligned_cols=55  Identities=20%  Similarity=0.317  Sum_probs=41.3

Q ss_pred             EecCCCh---hcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEEEecCccc
Q psy2533         125 SVVKGGA---ADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAIY  182 (684)
Q Consensus       125 ~V~pGGp---A~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV~R~~~~~  182 (684)
                      +|.||..   -...| |+.||.+++|||.++.+.  +++.+++.+.  ...++|+|.|++...
T Consensus       210 rl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~~  269 (276)
T PRK09681        210 AVKPGADRSLFDASG-FKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGARH  269 (276)
T ss_pred             EECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEEE
Confidence            3445543   34568 999999999999999875  5566666543  567999999998653

>KOG3532|consensus

Probab=92.93  E-value=0.25  Score=57.87  Aligned_cols=73  Identities=15%  Similarity=0.207  Sum_probs=58.0

Q ss_pred             ecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEe
Q psy2533          98 DMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  177 (684)
Q Consensus        98 k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R  177 (684)
                      ...+..+|+..-.     .+...|-|..|.++++|.++. +++||+|++|||++++.  ..++...++.....|...+.|
T Consensus       382 ~~~s~~ig~vf~~-----~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  382 YDVSSPIGLVFDK-----NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             ccccCceeEEEec-----CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence            3445667776543     123578999999999999998 99999999999999965  688999999887777766665


Q ss_pred             c
Q psy2533         178 Q  178 (684)
Q Consensus       178 ~  178 (684)
                      .
T Consensus       454 ~  454 (1051)
T KOG3532|consen  454 S  454 (1051)
T ss_pred             c
Confidence            3

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=92.45  E-value=0.26  Score=55.24  Aligned_cols=49  Identities=27%  Similarity=0.542  Sum_probs=37.7

Q ss_pred             hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCCcc
Q psy2533         282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGAI  333 (684)
Q Consensus       282 GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~~~  333 (684)
                      ++|++ ++|++||+|++|||..+..+  ++..++++.. +..+.|.|.|.+..
T Consensus       124 SPAa~-AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge~  173 (402)
T TIGR02860       124 SPGEE-AGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGKI  173 (402)
T ss_pred             CHHHH-cCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCEE
Confidence            34554 45999999999999999765  5667777664 56899999987643

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=92.23  E-value=0.32  Score=43.64  Aligned_cols=42  Identities=21%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             CCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCc
Q psy2533         289 RLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGA  332 (684)
Q Consensus       289 rLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~  332 (684)
                      .+++||.|++|||+.|..-.  .-..+|.. ++..|.|.|.+.+.
T Consensus        39 ~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   39 DVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             ---TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-STT
T ss_pred             CCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCCC
Confidence            57899999999999998653  34556655 67789999998764

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=92.16  E-value=0.25  Score=53.60  Aligned_cols=56  Identities=29%  Similarity=0.684  Sum_probs=48.4

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecC
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQG  179 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~  179 (684)
                      |||+..|..+++|  .|.|+.||.|++|||.++..  ..+....++  +.|+.|++...|..
T Consensus       131 gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~  188 (342)
T COG3480         131 GVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHN  188 (342)
T ss_pred             eEEEEEccCCcch--hceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEecc
Confidence            7999999999999  68899999999999999976  467777776  45999999999754

>KOG4371|consensus

Probab=91.34  E-value=0.26  Score=60.01  Aligned_cols=86  Identities=23%  Similarity=0.346  Sum_probs=72.6

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+++++..++|+.+....-+    .+|||..+...+.|.-.|+|++||+|+..+|.++.+.+......-++-..
T Consensus      1244 ~~l~~~~~~~~p~~~~~~~~~~~~~s----~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~ 1319 (1332)
T KOG4371|consen 1244 APLISVMLLKKPMATLGLSLAKRTMS----DGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQ 1319 (1332)
T ss_pred             chhhhheeeecccccccccccccCcC----CceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhcc
Confidence            34567788899999999999865433    48999999999999999999999999999999999999988887777667


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                      +.|.+++.|.
T Consensus      1320 ~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1320 GPVQITVTRE 1329 (1332)
T ss_pred             Cchhheehhh
Confidence            7777777654

>KOG3938|consensus

Probab=91.22  E-value=0.24  Score=52.55  Aligned_cols=61  Identities=21%  Similarity=0.414  Sum_probs=48.4

Q ss_pred             EEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCccccc
Q psy2533         276 FYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAIYHG  336 (684)
Q Consensus       276 FV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~~~~~  336 (684)
                      ||+.|.  +.-++--.+++||.|-+|||+++.|.-|-+++.+||.-  +...+|.+.-+...+..
T Consensus       152 FIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLiePk~af~~  216 (334)
T KOG3938|consen  152 FIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEPKSAFDG  216 (334)
T ss_pred             eeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeeccccccCc
Confidence            555554  33455457999999999999999999999999999994  56788888877655544

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=90.41  E-value=0.43  Score=51.06  Aligned_cols=48  Identities=13%  Similarity=0.209  Sum_probs=37.8

Q ss_pred             hhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       285 ardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      ....+|++||.+++|||.+|.+..  ++.+++..  ....++|.|.|.+...
T Consensus       220 F~~~GLq~GDva~sING~dL~D~~--qa~~l~~~L~~~tei~ltVeRdGq~~  269 (276)
T PRK09681        220 FDASGFKEGDIAIALNQQDFTDPR--AMIALMRQLPSMDSIQLTVLRKGARH  269 (276)
T ss_pred             HHHcCCCCCCEEEEeCCeeCCCHH--HHHHHHHHhccCCeEEEEEEECCEEE
Confidence            456679999999999999998764  56666655  3567999999998654

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=88.62  E-value=0.89  Score=49.31  Aligned_cols=63  Identities=21%  Similarity=0.276  Sum_probs=46.5

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ...|.+|..+.  ++|++.| |+.||.|+++||..+.+..-....-.....+..+.+.+.|.+...
T Consensus       268 ~~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~  332 (347)
T COG0265         268 VAAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKER  332 (347)
T ss_pred             CCCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEEE
Confidence            35678999997  6777776 999999999999999876433222222235779999999985443

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=88.32  E-value=0.6  Score=52.83  Aligned_cols=42  Identities=14%  Similarity=0.226  Sum_probs=30.3

Q ss_pred             hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2533         282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA  328 (684)
Q Consensus       282 GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~  328 (684)
                      ++|++. +|++||+|++|||+.+.++.  +....+  .+..+.|.|.
T Consensus         9 SpAe~A-GLe~GD~IlsING~~V~Dw~--D~~~~l--~~e~l~L~V~   50 (433)
T TIGR03279         9 SIAEEL-GFEPGDALVSINGVAPRDLI--DYQFLC--ADEELELEVL   50 (433)
T ss_pred             CHHHHc-CCCCCCEEEEECCEECCCHH--HHHHHh--cCCcEEEEEE
Confidence            455555 59999999999999998653  443444  2456888886

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG1320|consensus

Probab=88.18  E-value=1.1  Score=51.13  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=47.8

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC--CEEEEEEEecCc
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAKQGA  180 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg--~~V~LvV~R~~~  180 (684)
                      +++|..|.||+++..-+ +.+||+|+.|||.++.++.|  ...++..+-  +.|.++..+...
T Consensus       399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~~~~e  458 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDRRSAE  458 (473)
T ss_pred             EEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEecCcc
Confidence            68999999999999888 99999999999999999855  567777664  467776666543

>KOG0606|consensus

Probab=87.39  E-value=0.83  Score=56.41  Aligned_cols=46  Identities=28%  Similarity=0.487  Sum_probs=41.1

Q ss_pred             hhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         284 RNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       284 AardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      .+...+|++||.|+-|||+.+.++.|.+++++|-+.+..|++.+..
T Consensus       670 PA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~ttp  715 (1205)
T KOG0606|consen  670 PAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTTP  715 (1205)
T ss_pred             CccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEeec
Confidence            3445569999999999999999999999999999999999888765

>KOG1421|consensus

Probab=85.51  E-value=3.2  Score=49.27  Aligned_cols=136  Identities=18%  Similarity=0.135  Sum_probs=80.1

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCccccccccccCCCCCccccC
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRG  199 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s~  199 (684)
                      =+.|++|.++-+-  -  |..||.||+|||..+..++...-+.       .+.++|.|++-........  .|...    
T Consensus       772 l~~ishv~~~~~k--i--l~~gdiilsvngk~itr~~dl~d~~-------eid~~ilrdg~~~~ikipt--~p~~e----  834 (955)
T KOG1421|consen  772 LYVISHVRPLLHK--I--LGVGDIILSVNGKMITRLSDLHDFE-------EIDAVILRDGIEMEIKIPT--YPEYE----  834 (955)
T ss_pred             EEEEEeeccCccc--c--cccccEEEEecCeEEeeehhhhhhh-------hhheeeeecCcEEEEEecc--ccccc----
Confidence            4778899887543  2  8899999999999998887655222       5677888876443221100  00000    


Q ss_pred             CCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEe
Q psy2533         200 QVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQN  279 (684)
Q Consensus       200 ~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~s  279 (684)
                         . .+.+.                 -+|..+.+        .+..+...-                 .....|+||..
T Consensus       835 ---t-~r~vi-----------------~~gailq~--------ph~av~~q~-----------------edlp~gvyvt~  868 (955)
T KOG1421|consen  835 ---T-SRAVI-----------------WMGAILQP--------PHSAVFEQV-----------------EDLPEGVYVTS  868 (955)
T ss_pred             ---c-ceEEE-----------------EEeccccC--------chHHHHHHH-----------------hccCCceEEee
Confidence               0 00000                 01211110        011111000                 01225889998


Q ss_pred             cc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCe
Q psy2533         280 LS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  322 (684)
Q Consensus       280 I~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~  322 (684)
                      ..  ++|.+  .|+.-.-|.+|||+.+-  +.++-+.+|+.-++.
T Consensus       869 rg~gspalq--~l~aa~fitavng~~t~--~lddf~~~~~~ipdn  909 (955)
T KOG1421|consen  869 RGYGSPALQ--MLRAAHFITAVNGHDTN--TLDDFYHMLLEIPDN  909 (955)
T ss_pred             cccCChhHh--hcchheeEEEecccccC--cHHHHHHHHhhCCCC
Confidence            87  56766  69999999999998875  456778888886654

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=84.20  E-value=1.7  Score=47.49  Aligned_cols=59  Identities=20%  Similarity=0.440  Sum_probs=44.5

Q ss_pred             CCcEEEecchhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~  333 (684)
                      .|+|+..+.-.-...|.|+.||.|++|||+.+..  .++....+++  .|+.|++.+.|....
T Consensus       130 ~gvyv~~v~~~~~~~gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~~  190 (342)
T COG3480         130 AGVYVLSVIDNSPFKGKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNET  190 (342)
T ss_pred             eeEEEEEccCCcchhceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccCC
Confidence            4788888862222346799999999999999975  4577777755  689999999985443

>KOG1320|consensus

Probab=83.45  E-value=3.5  Score=47.35  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=42.9

Q ss_pred             CCcEEEecc-hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC--CeEEEEEEeCC
Q psy2533         273 PERFYQNLS-VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~-GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg--~~VtL~V~R~~  331 (684)
                      .+++|..|. +..+..+.+++||+|+.|||+.+.++.  +...+|..+.  ++|.++..|..
T Consensus       398 q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~--~l~~~i~~~~~~~~v~vl~~~~~  457 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLK--HLYELIEECSTEDKVAVLDRRSA  457 (473)
T ss_pred             eEEEEEEeccCCCcccccccCCCEEEEECCEEeechH--HHHHHHHhcCcCceEEEEEecCc
Confidence            567777776 555556779999999999999999875  5677777765  36766665543

>KOG4407|consensus

Probab=82.53  E-value=0.48  Score=58.92  Aligned_cols=59  Identities=31%  Similarity=0.506  Sum_probs=54.3

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecC
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  179 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~  179 (684)
                      .|||..|.+.|||+... |+-||+|+.||..++.++....+|.++++.....+|.|.-..
T Consensus       144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~  202 (1973)
T KOG4407|consen  144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKE  202 (1973)
T ss_pred             hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecccc
Confidence            68999999999999998 999999999999999999999999999999888888776543

>KOG1738|consensus

Probab=81.39  E-value=1.9  Score=50.55  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=49.0

Q ss_pred             cEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         275 RFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       275 IFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ++|.++.  ++|+.+..|..||+++.||+..+.|..+.-.|.-|.....-|.++|..+..
T Consensus       227 h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~  286 (638)
T KOG1738|consen  227 HVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPV  286 (638)
T ss_pred             eeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCC
Confidence            3444454  789999999999999999999999999999999999988877777766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	684
1xz9_A	101	Structure Of Af-6 Pdz Domain Length = 101		2e-25
1xz9_A	101	Structure Of Af-6 Pdz Domain Length = 101		1e-12
1t2m_A	101	Solution Structure Of The Pdz Domain Of Af-6 Length		3e-25
1t2m_A	101	Solution Structure Of The Pdz Domain Of Af-6 Length		2e-12
2ain_A	93	Solution Structure Of The Af-6 Pdz Domain Complexed		4e-25
2ain_A	93	Solution Structure Of The Af-6 Pdz Domain Complexed		4e-12
3axa_A	106	Crystal Structure Of Afadin Pdz Domain In Complex W		2e-24
3axa_A	106	Crystal Structure Of Afadin Pdz Domain In Complex W		4e-12
2fn5_A	94	Nmr Structure Of The Neurabin Pdz Domain (502-594)		4e-10
1wf8_A	107	Solution Structure Of The Pdz Domain Of Spinophilin		6e-10
3hvq_C	170	Crystal Structure Of A Complex Between Protein Phos		2e-09
2g5m_B	113	Spinophilin Pdz Domain Length = 113		1e-08
3egg_C	170	Crystal Structure Of A Complex Between Protein Phos		1e-08
3egh_C	170	Crystal Structure Of A Complex Between Protein Phos		1e-08
2iwn_A	97	3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz		5e-08
2iwn_A	97	3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz		4e-04
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		8e-08
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		4e-04
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		9e-08
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		1e-07
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		1e-07
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		1e-07
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		2e-07
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		2e-07
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		2e-07
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		3e-07
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		3e-07
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		4e-07
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		5e-07
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		7e-07
4amh_A	106	Influence Of Circular Permutation On The Folding Pa		8e-07
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		9e-07
1wg6_A	127	Solution Structure Of Pdz Domain In Protein Xp_1108		9e-07
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		1e-06
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		2e-06
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-06
2g2l_A	105	Crystal Structure Of The Second Pdz Domain Of Sap97		2e-06
3cc0_A	108	The Dvl2 Pdz Domain In Complex With The N3 Inhibito		3e-06
3cbz_A	108	The Dvl2 Pdz Domain In Complex With The N2 Inhibito		3e-06
3cby_A	108	The Dvl2 Pdz Domain In Complex With The N1 Inhibito		3e-06
3cbx_A	105	The Dvl2 Pdz Domain In Complex With The C1 Inhibito		3e-06
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		4e-06
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		5e-06
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		6e-06
2x7z_A	99	Crystal Structure Of The Sap97 Pdz2 I342w C378a Mut		6e-06
2fe5_A	94	The Crystal Structure Of The Second Pdz Domain Of H		7e-06
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		8e-06
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		1e-05
4g69_A	100	Structure Of The Human Discs Large 1 Pdz2 - Adenoma		1e-05
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		1e-05
2rey_A	100	Crystal Structure Of The Pdz Domain Of Human Dishev		2e-05
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		2e-05
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		3e-05
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		3e-05
1mc7_A	95	Solution Structure Of Mdvl1 Pdz Domain Length = 95		3e-05
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		3e-05
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		3e-05
2kaw_A	90	Nmr Structure Of The Mdvl1 Pdz Domain In Complex Wi		3e-05
2dmz_A	129	Solution Structure Of The Third Pdz Domain Of Human		4e-05
2vrf_A	95	Crystal Structure Of The Human Beta-2-Syntrophin Pd		5e-05
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		7e-05
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		7e-05
1um1_A	110	Solution Structure Of Rsgi Ruh-007, Pdz Domain In H		7e-05
3fy5_A	91	Dishevelled Pdz Domain Homodimer Length = 91		1e-04
2wl7_A	102	Crystal Structure Of The Psd93 Pdz1 Domain Length =		1e-04
2f0a_A	98	Crystal Structure Of Monomeric Uncomplexed Form Of		1e-04
2i0l_A	84	X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The		2e-04
2kom_A	121	Solution Structure Of Humar Par-3b Pdz2 (Residues 4		2e-04
1l6o_A	95	Xenopus Dishevelled Pdz Domain Length = 95		2e-04
1zok_A	93	Pdz1 Domain Of Synapse Associated Protein 97 Length		2e-04
1uju_A	111	Solution Structure Of The Fourth Pdz Domain Of Huma		2e-04
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		3e-04
3k1r_A	192	Structure Of Harmonin Npdz1 In Complex With The Sam		3e-04
2koj_A	111	Solution Structure Of Mouse Par-3 Pdz2 (Residues 45		3e-04
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		3e-04
1z87_A	263	Solution Structure Of The Split Ph-Pdz Supramodule		4e-04
1wi4_A	109	Solution Structure Of The Pdz Domain Of Syntaxin Bi		4e-04
2djt_A	104	Solution Structures Of The Pdz Domain Of Human Unna		4e-04
2q9v_A	90	Crystal Structure Of The C890s Mutant Of The 4th Pd		5e-04
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		5e-04
3rl7_B	107	Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc L		5e-04
3b76_A	118	Crystal Structure Of The Third Pdz Domain Of Human		5e-04
2ogp_A	97	Solution Structure Of The Second Pdz Domain Of Par-		5e-04

>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain Length = 101

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 67/76 (88%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct: 25  LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 84
Query: 166 RTGPIVTLEIAKQGAI 181
           RT  +VTLE+AKQGAI
Sbjct: 85  RTSSVVTLEVAKQGAI 100

>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain Length = 101

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
           +GRL AGDQLL VDG+SLVG++QE+AAE + RT  +VTLE+AKQGAI
Sbjct: 54  DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100

>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6 Length = 101

Iteration: 1
 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 67/76 (88%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct: 19  LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 78
Query: 166 RTGPIVTLEIAKQGAI 181
           RT  +VTLE+AKQGA+
Sbjct: 79  RTSSVVTLEVAKQGAL 94

>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6 Length = 101

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
           +GRL AGDQLL VDG+SLVG++QE+AAE + RT  +VTLE+AKQGA+
Sbjct: 48  DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAL 94

>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With The C-Terminal Peptide From The Bcr Protein Length = 93

Iteration: 1
 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 66/75 (88%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct: 19  LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 78
Query: 166 RTGPIVTLEIAKQGA 180
           RT  +VTLE+AKQGA
Sbjct: 79  RTSSVVTLEVAKQGA 93

>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With The C-Terminal Peptide From The Bcr Protein Length = 93

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 40/46 (86%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
           +GRL AGDQLL VDG+SLVG++QE+AAE + RT  +VTLE+AKQGA
Sbjct: 48  DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGA 93

>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The C-Terminal Peptide From Nectin-3 Length = 106

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 67/76 (88%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           LS ++ +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + 
Sbjct: 25  LSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 84
Query: 166 RTGPIVTLEIAKQGAI 181
           RT  +VTLE+AKQGAI
Sbjct: 85  RTSSVVTLEVAKQGAI 100

>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The C-Terminal Peptide From Nectin-3 Length = 106

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
           +GRL AGDQLL VDG+SLVG++QE+AAE + RT  +VTLE+AKQGAI
Sbjct: 54  DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100

>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594) Length = 94

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           AG ++LGI++K+V +GGAA  +GR+Q  DQ+++VDG SLVG+TQ  AA  L  T   V  
Sbjct: 30  AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 89
Query: 174 EIAKQ 178
            I ++
Sbjct: 90  VIGRE 94

>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of SpinophilinNEURABINII PROTEIN Length = 107

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           AG ++LGI++K+V +GGAA  +GR+Q  DQ+++VDG SLVG+TQ  AA  L  T   V  
Sbjct: 35  AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 94
Query: 174 EIAKQ 178
            I ++
Sbjct: 95  VIGRE 99

>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Neurabin Length = 170

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           AG ++LGI++K+V +GGAA  +GR+Q  DQ+++VDG SLVG+TQ  AA  L  T   V  
Sbjct: 106 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 165
Query: 174 EIAKQ 178
            I ++
Sbjct: 166 VIGRE 170

>pdb|2G5M|B Chain B, Spinophilin Pdz Domain Length = 113

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 113 GAGQD----RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
           GAG D    +LGI++K+V +GGAA  +GR+Q  D L++VDG SLVG+TQ  AA  L  T 
Sbjct: 25  GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 84
Query: 169 PIVTLEIAKQ 178
             V   I ++
Sbjct: 85  GRVRFMIGRE 94

>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Spinophilin Length = 170

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 113 GAGQD----RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
           GAG D    +LGI++K+V +GGAA  +GR+Q  D L++VDG SLVG+TQ  AA  L  T 
Sbjct: 101 GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 160
Query: 169 PIVTLEIAKQ 178
             V   I ++
Sbjct: 161 GRVRFMIGRE 170

>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of Spinophilin And The Small Natural Molecular Toxin Nodularin-R Length = 170

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 113 GAGQD----RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
           GAG D    +LGI++K+V +GGAA  +GR+Q  D L++VDG SLVG+TQ  AA  L  T 
Sbjct: 101 GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 160
Query: 169 PIVTLEIAKQ 178
             V   I ++
Sbjct: 161 GRVRFMIGRE 170

>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 97

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           GI++KS+ K  A + +GR+Q GDQ++ VDG +L G T ++A E L  TG  V L + ++G
Sbjct: 34  GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93

>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 97

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
           +GR+Q GDQ++ VDG +L G T ++A E L  TG  V L + ++G
Sbjct: 49  DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 43/70 (61%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
            S +   G+    L IY+K+V   GAA  +GRL+ GDQ++ V+GQSL G+T E+A   L 
Sbjct: 40  FSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK 99
Query: 166 RTGPIVTLEI 175
           RT   VTL +
Sbjct: 100 RTKGTVTLMV 109

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +++GRL+ GDQ++ V+GQSL G+T E+A   L RT   VTL +
Sbjct: 67  SEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           GIY+K+++  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V L + K
Sbjct: 38  GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 95

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           GIY+K+++  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V L + K
Sbjct: 33  GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 90

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           G+ ++++V GG AD +GRLQ GD +LK+ G ++ G+T E+ A+ L   G  V + +A+  
Sbjct: 39  GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDP 98
Query: 180 AIYHGLATLLSQPS 193
           A   G  ++ S PS
Sbjct: 99  A---GDISVTSGPS 109

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
           LGI++KS++ GGAA  +GRL+  DQL+ V+G+SL+G   ++A E L R+   ++ E  K+
Sbjct: 39  LGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS---MSTEGNKR 95
Query: 179 GAI 181
           G I
Sbjct: 96  GMI 98

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT 167
           LGI++KS++ GGAA  +GRL+  DQL+ V+G+SL+G   ++A E L R+
Sbjct: 36  LGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS 84

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           G+++  +VKGG ADA+GRL  GDQ+L V+G+ +   TQE  A  L  +   VTLE+ +
Sbjct: 30  GVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGR 87

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           GIY+K+V+  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V L + K
Sbjct: 43  GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 100

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           GIY+K+V+  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V L + K
Sbjct: 34  GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           GIY+K+V+  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V L + K
Sbjct: 34  GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
           IY+ S+V+GGAA  +G+LQ GD+LL V+   L  +T E+A   L  T   V L++AK  +
Sbjct: 35  IYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 181 IY 182
           +Y
Sbjct: 95  MY 96

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           GIY+K+++  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V L + K
Sbjct: 41  GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 98

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
           IY+  +++GGAA  +G+LQ GD+LL V+  SL  +T E+A   L  T   V L++AK  +
Sbjct: 35  IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 181 IY 182
           +Y
Sbjct: 95  MY 96

>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of A Pdz Domain Length = 106

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
           IY+  +++GGAA  +G+LQ GD+LL V+  +L  +T E+A   L  T   V L++AK G+
Sbjct: 34  IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGS 93

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
           IY+  ++ GGAA  +GRLQ GD+LL V+  SL  +T E+A   L  T  +V L++ K   
Sbjct: 56  IYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115
Query: 181 IY 182
           IY
Sbjct: 116 IY 117

>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852 Length = 127

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT 167
           LGI+IKS++ GGAA  +GRL+  DQL+ V+G++L+G +  +A E L R+
Sbjct: 55  LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS 103

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
            G+D  GI++  ++ GG AD +G LQ GDQ+L V+G  L G + E+AA  L   G  VT+
Sbjct: 22  GGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTI 81

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
           IY+  +++GGAA  +G+LQ GD+LL V+   L  +T E+A   L  T   V L++AK  +
Sbjct: 43  IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 102
Query: 181 IY 182
           +Y
Sbjct: 103 MY 104

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
           IY+  +++GGAA  +G+LQ GD+LL V+   L  +T E+A   L  T   V L++AK  +
Sbjct: 35  IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 181 IY 182
           +Y
Sbjct: 95  MY 96

>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In Complex With A Glur-A C-Terminal Peptide Length = 105

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
           IY+  +++GGAA  +G+LQ GD+LL V+   L  +T E+A   L  T   V L++AK  +
Sbjct: 35  IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Query: 181 IY 182
           +Y
Sbjct: 95  MY 96

>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           + + +E G G    GIYI S++KGGA  A+GR++ GD LL+V+  +   ++ + A   L 
Sbjct: 24  VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAKQGA 180
               + GPIV L +AK G 
Sbjct: 80  DIVHKPGPIV-LTVAKSGG 97

>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           + + +E G G    GIYI S++KGGA  A+GR++ GD LL+V+  +   ++ + A   L 
Sbjct: 24  VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAKQGA 180
               + GPIV L +AK G 
Sbjct: 80  DIVHKPGPIV-LTVAKSGG 97

>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           + + +E G G    GIYI S++KGGA  A+GR++ GD LL+V+  +   ++ + A   L 
Sbjct: 24  VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAKQGA 180
               + GPIV L +AK G 
Sbjct: 80  DIVHKPGPIV-LTVAKSGG 97

>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory Peptide Length = 105

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           + + +E G G    GIYI S++KGGA  A+GR++ GD LL+V+  +   ++ + A   L 
Sbjct: 24  VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAKQGA 180
               + GPIV L +AK G 
Sbjct: 80  DIVHKPGPIV-LTVAKSGG 97

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
            G+D  GI++  ++ GG AD +G L+ GD++L V+G +L   T E+AA  L R G  VT+
Sbjct: 34  GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 93

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
            G+D  GI++  ++ GG AD +G L+ GD++L V+G +L   T E+AA  L R G  VT+
Sbjct: 31  GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 90

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
            G+D  GI+I  ++ GG AD +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+
Sbjct: 326 GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385

>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant Protein Domain Length = 99

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           IY+  +++GGAA  +G+LQ GD+LL V+  +L  +T E+A   L  T   V L++AK
Sbjct: 40  IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 96

>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3 Length = 94

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
           IYI  +++GGAA  +GRLQ GD+LL V+  +L  +  E+A   L  T  +V L++AK G+
Sbjct: 35  IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           IY+  +++GGAA  +G+LQ GD+LL V+   L  +T E+A   L  T   V L++AK
Sbjct: 31  IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 87

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
            G+D  GI+I  ++ GG AD +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+
Sbjct: 33  GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92

>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex Length = 100

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           IY+  +++GGAA  +G+LQ GD+LL V+   L  +T E+A   L  T   V L++AK
Sbjct: 41  IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 97

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
            G+D  GI+I  ++ GG AD +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+
Sbjct: 33  GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92

>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2 (Homologous To Drosophila Dsh) Length = 100

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           + + +E G G    GIYI S++KGGA  A+GR++ GD LL+V+  +   ++ + A   L 
Sbjct: 24  VGQSNERGDG----GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Query: 166 ----RTGPIVTLEIAK 177
               + GPIV L +AK
Sbjct: 80  DIVHKPGPIV-LTVAK 94

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           IY+  +++GGAA  +GRLQ GD++L V+   L  +  E A   L  T  +V L++AK
Sbjct: 35  IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 91

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           IY+  +++GGAA  +GRLQ GD++L V+   L  +  E A   L  T  +V L++AK
Sbjct: 129 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 185

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           IY+  +++GGAA  +GRLQ GD++L V+   L  +  E A   L  T  +V L++AK
Sbjct: 139 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 195

>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain Length = 95

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAA----EYLVRTGPIVTLEI 175
           GIYI S++KGGA  A+GR++ GD LL+V+  +   ++ + A     E + +TGPI +L +
Sbjct: 27  GIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI-SLTV 85
Query: 176 AK 177
           AK
Sbjct: 86  AK 87

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           IY+  +++GGAA  +GRLQ GD++L V+   L  +  E A   L  T  +V L++AK
Sbjct: 132 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL----------VRTGP 169
           IYI  V+ GG AD +G L+ GDQLL V+G S+ G   EKA E L          VR+GP
Sbjct: 32  IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGP 90

>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its Inhibitor Length = 90

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAA----EYLVRTGPIVTLEI 175
           GIYI S++KGGA  A+GR++ GD LL+V+  +   ++ + A     E + +TGPI +L +
Sbjct: 30  GIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI-SLTV 88
Query: 176 AK 177
           AK
Sbjct: 89  AK 90

>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad- Like Protein Length = 129

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
           GIY+KSV+ G AA  NG +Q  D+++ VDG ++ G       E L   G +V L + ++
Sbjct: 47  GIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRR 105

>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain Length = 95

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 90  SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDG 149
           SM    VR +++QEA    +S +G  ++R+ I I  +  G AAD +  L+ GD +L V+G
Sbjct: 1   SMPVRRVR-VVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNG 59
Query: 150 QSLVGITQEKAAEYLVRTGPIVTLEI 175
             L   T ++A + L R G  V LE+
Sbjct: 60  TDLRQATHDQAVQALKRAGKEVLLEV 85

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
            G+   GI+I  ++ GG AD +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+
Sbjct: 25  GGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 84

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
            G+   GI+I  ++ GG AD +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+
Sbjct: 30  GGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 89

>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human Cdna Length = 110

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           G+YI++++ G  A A+GRL  GD++L+V+G SL+G+   +A + +   G  +   +AK
Sbjct: 37  GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAK 94

>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer Length = 91

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           + + +E G G    GIYI S+ KGGA  A+GR++ GD LL+V+  +    + + A   L 
Sbjct: 18  VGQSNERGDG----GIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 73
Query: 166 ----RTGPIVTLEIAK 177
               + GPIV L +AK
Sbjct: 74  DIVHKPGPIV-LTVAK 88

>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain Length = 102

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
           D  GI+I  ++ GGAA  +GRL+  D +L+V+   +  ++  KA E L   G IV L + 
Sbjct: 37  DDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVR 96
Query: 177 KQGAI 181
           ++  I
Sbjct: 97  RRRPI 101

>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus Dishevelled Pdz Domain Length = 98

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           + + +E G G    GIYI S+ KGGA  A+GR++ GD LL+V+  +    + + A   L 
Sbjct: 20  VGQSNERGDG----GIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
Query: 166 ----RTGPIVTLEIAK 177
               + GPIV L +AK
Sbjct: 76  DIVHKPGPIV-LTVAK 90

>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C- Terminal Peptide Of Hpv18 E6. Length = 84

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           IY+  +++GGAA  +G+LQ GD+LL V+   L  +T E+A   L  T   V L+
Sbjct: 30  IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLK 83

>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549) Length = 121

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL 164
           IY+K+++  GAA  +GRL+AGD+L++V+G  LVG +QE+    L
Sbjct: 60  IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103

>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain Length = 95

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           + + +E G G    GIYI S+ KGGA  A+GR++ GD LL+V+  +    + + A   L 
Sbjct: 20  VGQSNERGDG----GIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
Query: 166 ----RTGPIVTLEIAK 177
               + GPIV L +AK
Sbjct: 76  DIVHKPGPIV-LTVAK 90

>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97 Length = 93

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
           D   I+I  ++ GGAA  +GRL+  D +L+V+   +  +T  KA E L   G IV L + 
Sbjct: 29  DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVK 88
Query: 177 KQGA 180
           ++ A
Sbjct: 89  RRKA 92

>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 111

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           GI+I  V   GAA  +GRL+ G +LL+V+ QSL+G+T  +A + L   G  +T+
Sbjct: 45  GIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTV 98

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
           GIY+  + + GAA  +GRLQ GD++L V+GQ L  +  + A +     G  V+L +
Sbjct: 40  GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 95

>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of Sans Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 102 QEAKLSEMSEEGAG-------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVG 154
           +E +L  +  EG G       +   G++I  ++KGG AD+ G LQ GD++++++G S+  
Sbjct: 86  KEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISS 144
Query: 155 ITQEKAAEYLVRTGPIVTLEIAKQGAI 181
            T E+    L+RT   V++++   G I
Sbjct: 145 CTHEEVIN-LIRTEKTVSIKVRHIGLI 170

>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558) Length = 111

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAKQ 178
           IY+K+++  GAA  +GRL+AGD+L++V+G  L G +QE+    L  T     V+L + +Q
Sbjct: 41  IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100
Query: 179 GAIYH 183
              +H
Sbjct: 101 EEAFH 105

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
           GIY+  + + GAA  +GRLQ GD++L V+GQ L  +  + A +     G  V+L +
Sbjct: 38  GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93

>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of Alpha- Syntrophin Length = 263

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 80  PGTPPNRLDSSMKSHSVRDMLRQ-EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRL 138
           PG  P +L  ++     R  +R+ +A    +S +G  ++++ I I  + KG AAD    L
Sbjct: 63  PGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEAL 122
Query: 139 QAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
             GD +L V+G+ L   T ++A + L +TG  V LE+
Sbjct: 123 FVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159

>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding Protein 4 Length = 109

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
           +YI  V+ GG    +GRL+ GDQL+ ++ +S++G++ E+A   + R
Sbjct: 43  VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR 88

>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed Protein Product Length = 104

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 113 GAGQDRLG---IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
           G G+D  G   + ++ ++K G A   GRL+ GD +L ++G+S  G+T  +A E +   GP
Sbjct: 29  GGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGP 88
Query: 170 IVTLEIAK 177
            + L I +
Sbjct: 89  QLHLVIRR 96

>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 180
           IYI  +V  GAAD +GRL++GD+L+ VDG  ++G + +   + + +         AKQG 
Sbjct: 29  IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQA--------AKQGH 80
Query: 181 I 181
           +
Sbjct: 81  V 81

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
           GIY+  + + GAA  +GRLQ GD++L V+GQ L  +  + A +     G  V+L +
Sbjct: 48  GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103

>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
           D   I+I  ++ GGAA  +GRL+  D +L+V+   +  +T  KA E L   G IV L + 
Sbjct: 39  DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVK 98
Query: 177 KQGAI 181
           ++  +
Sbjct: 99  RRKPV 103

>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human Ligand-of-numb Protein-x (lnx1) In Complex With The C-terminal Peptide From The Coxsackievirus And Adenovirus Receptor Length = 118

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 109 MSEEGAGQDR---LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           M+  G    R   L IY+ SV  GG    +GR++ GD LL VDG  L  +++ +A   L 
Sbjct: 40  MTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK 99
Query: 166 RTGPIVTLEI--AKQGAI 181
           RT   + L+    K+G+I
Sbjct: 100 RTSSSIVLKALEVKEGSI 117

>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3 Length = 97

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL 164
           IY+K+++  GAA  +GRL+AGD+L++V+G  L G +QE+    L
Sbjct: 35  IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLL 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	684
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	2e-27
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	8e-17
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	3e-26
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	1e-17
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-24
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	4e-16
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-23
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	4e-14
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	5e-23
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	3e-12
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	7e-23
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	1e-12
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	9e-23
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	7e-13
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-22
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-13
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	1e-22
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	2e-13
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-22
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	5e-13
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	2e-22
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	2e-13
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	3e-22
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	2e-12
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	6e-22
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	6e-13
2awx_A	105	Synapse associated protein 97; membrane protein, s	7e-22
2awx_A	105	Synapse associated protein 97; membrane protein, s	7e-13
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	7e-22
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	4e-13
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	7e-22
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	2e-12
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	8e-22
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	2e-12
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-21
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	2e-12
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-21
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	3e-12
2opg_A	98	Multiple PDZ domain protein; structural protein, s	3e-21
2opg_A	98	Multiple PDZ domain protein; structural protein, s	2e-12
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	5e-21
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	4e-12
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	7e-21
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	7e-12
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	8e-21
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	3e-11
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	1e-20
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	1e-11
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	1e-20
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	3e-11
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-20
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-11
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	1e-20
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	3e-11
2fne_A	117	Multiple PDZ domain protein; structural protein, s	1e-20
2fne_A	117	Multiple PDZ domain protein; structural protein, s	1e-11
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-20
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	7e-11
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-20
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	7e-11
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-20
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-11
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	2e-20
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	4e-11
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	2e-20
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	2e-11
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	2e-20
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	3e-11
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	4e-20
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	5e-11
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	7e-20
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	3e-10
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	7e-20
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	3e-11
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	8e-20
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	1e-10
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	1e-19
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	8e-11
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	1e-19
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	3e-10
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-19
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	5e-10
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	2e-19
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	3e-10
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-19
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	4e-10
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-19
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-10
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-19
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	8e-10
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	4e-19
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	1e-09
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	5e-19
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-09
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	5e-19
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	2e-10
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	8e-19
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	2e-10
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	9e-19
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-08
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	1e-18
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	3e-10
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	1e-18
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	1e-09
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	1e-18
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-10
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-18
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-10
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	1e-18
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	2e-09
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	2e-18
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	6e-09
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-18
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	3e-09
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-18
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-10
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	8e-10
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	4e-18
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	1e-09
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	4e-18
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	6e-09
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	4e-18
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	2e-10
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	5e-18
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	4e-09
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	7e-18
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	4e-09
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	1e-17
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	8e-09
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	2e-17
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	2e-09
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	4e-17
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	9e-09
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	5e-17
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	2e-08
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	7e-17
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-08
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	8e-17
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-08
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-16
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-15
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-09
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	6e-08
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	1e-16
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	4e-08
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	1e-16
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	6e-09
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	1e-16
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	2e-08
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-16
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	4e-13
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	6e-09
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	3e-06
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	2e-16
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-08
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	3e-16
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	6e-09
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	3e-16
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	4e-08
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	3e-16
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	7e-09
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	4e-16
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	5e-08
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	5e-16
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	9e-08
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	8e-16
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-06
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	9e-16
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	4e-08
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	1e-15
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	1e-07
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-15
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	7e-08
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	2e-15
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-08
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-15
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	7e-07
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	2e-15
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	8e-08
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	3e-15
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	1e-08
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	4e-15
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	5e-08
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	9e-15
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	3e-07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	3e-14
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	4e-07
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-13
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	3e-06
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-13
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	3e-07
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	2e-13
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	3e-04
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-13
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-05
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-13
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	4e-05
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	4e-13
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	2e-05
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	1e-12
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	2e-05
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	1e-12
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-05
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	1e-12
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	9e-06
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-12
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	5e-06
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	1e-12
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	3e-06
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	2e-12
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	2e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	6e-12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-04
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	3e-12
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	1e-04
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	4e-12
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	4e-04
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	5e-12
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	1e-04
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	6e-12
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	3e-04
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	1e-11
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	3e-04
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	1e-11
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	6e-04
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	2e-11
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	2e-06
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	2e-11
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	2e-05
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	2e-11
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	1e-04
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	2e-11
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	2e-04
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	3e-11
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	6e-05
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	3e-11
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	3e-05
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	3e-11
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	6e-04
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	4e-11
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	5e-04
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	4e-11
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	4e-05
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	4e-11
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	7e-06
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	5e-11
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-09
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	4e-06
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	4e-04
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	6e-11
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	7e-05
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	6e-11
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	9e-06
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	7e-11
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	7e-06
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	7e-11
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	8e-11
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	9e-05
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	8e-11
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	1e-05
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-10
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-08
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-04
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	5e-04
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	2e-10
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	5e-04
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	2e-10
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	3e-10
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	3e-10
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	5e-05
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	4e-10
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-05
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	6e-10
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	2e-05
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	7e-10
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	7e-04
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	9e-10
2ego_A	96	General receptor for phosphoinositides 1- associat	1e-09
2ego_A	96	General receptor for phosphoinositides 1- associat	6e-04
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-09
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	2e-09
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	6e-04
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-09
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	2e-09
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	4e-09
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	8e-04
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	6e-09
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	9e-09
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	9e-09
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	1e-08
3khf_A	99	Microtubule-associated serine/threonine-protein ki	2e-08
3khf_A	99	Microtubule-associated serine/threonine-protein ki	3e-04
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	3e-08
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	5e-05
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	5e-08
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	7e-08
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	1e-07
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	1e-07
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-07
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	2e-07
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	2e-05
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	7e-07
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-06
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	4e-06
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	8e-06
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	6e-05
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	1e-04
2kl1_A	94	YLBL protein; structure genomics, structural genom	1e-04
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	1e-04
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	3e-04
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	3e-04
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	5e-04
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	8e-04

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score =  105 bits (264), Expect = 2e-27
 Identities = 52/71 (73%), Positives = 62/71 (87%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + RT  +VT
Sbjct: 32  GAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVT 91

Query: 173 LEIAKQGAIYH 183
           LE+AKQGAI  
Sbjct: 92  LEVAKQGAIRR 102

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 75.5 bits (186), Expect = 8e-17
 Identities = 33/50 (66%), Positives = 41/50 (82%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
            +GRL AGDQLL VDG+SLVG++QE+AAE + RT  +VTLE+AKQGAI  
Sbjct: 53  VDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRR 102

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score =  103 bits (258), Expect = 3e-26
 Identities = 23/86 (26%), Positives = 38/86 (44%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G  Q    +YI  V     A  +G + AGD++  V+G+S+ G T+ + A+ +      VT
Sbjct: 39  GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 98

Query: 173 LEIAKQGAIYHGLATLLSQPSPVMTR 198
           +   K  A    L  L + P     +
Sbjct: 99  IHYNKLQADPKQLEVLFNGPGIESVK 124

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
            +G + AGD++  V+G+S+ G T+ + A+ +      VT+   K  A    L  L + P 
Sbjct: 60  LDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPG 119

Query: 346 PVMTR 350
               +
Sbjct: 120 IESVK 124

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score =  100 bits (250), Expect = 2e-24
 Identities = 45/225 (20%), Positives = 73/225 (32%), Gaps = 59/225 (26%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G  +D     + ++ +GG A  + +L  GD +  V+G +L     ++    L   G  V 
Sbjct: 28  GIDKD-GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVV 86

Query: 173 LEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVG--- 229
           LE+  +             P   +    V      +            LH   N  G   
Sbjct: 87  LEVEYE------------LPPVSIQGSSVMFRTVEV-----------TLHKEGNTFGFVI 123

Query: 230 -GSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNG 288
            G  H        +    V++                    PAD             + G
Sbjct: 124 RGGAHDDRNKSRPV----VITCVRPG--------------GPAD-------------REG 152

Query: 289 RLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
            ++ GD+LL VDG  L+G T  +A   L + G   TL I    ++
Sbjct: 153 TIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSV 197

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 76.3 bits (188), Expect = 4e-16
 Identities = 23/71 (32%), Positives = 32/71 (45%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
                     + I  V  GG AD  G ++ GD+LL VDG  L+G T  +A   L + G  
Sbjct: 127 AHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186

Query: 171 VTLEIAKQGAI 181
            TL I    ++
Sbjct: 187 ATLLIEYDVSV 197

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
                 IY+  ++ GGAA  +GRLQ GD+LL V+  SL  +T E+A   L  T  +V L+
Sbjct: 50  IPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK 109

Query: 175 IAKQGAIY 182
           + K   IY
Sbjct: 110 VGKPTTIY 117

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 68.2 bits (167), Expect = 4e-14
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
           ++GRLQ GD+LL V+  SL  +T E+A   L  T  +V L++ K   IY
Sbjct: 69  KDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY 117

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 92.7 bits (231), Expect = 5e-23
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
             ++  G+++  +VKGG ADA+GRL  GDQ+L V+G+ +   TQE  A  L  +   VTL
Sbjct: 24  GKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTL 83

Query: 174 EIAKQ 178
           E+ + 
Sbjct: 84  EVGRI 88

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
            +GRL  GDQ+L V+G+ +   TQE  A  L  +   VTLE+ + 
Sbjct: 44  ADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRI 88

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 92.8 bits (231), Expect = 7e-23
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
           M ++    +  GIY+KS++ G AA  +GR++  D++L+VD  ++ G+ Q    E L   G
Sbjct: 34  MRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAG 93

Query: 169 PIVTLEIAKQ 178
             V L + ++
Sbjct: 94  NPVRLLLIRR 103

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
            +GR++  D++L+VD  ++ G+ Q    E L   G  V L + ++
Sbjct: 59  LDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRR 103

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 92.4 bits (230), Expect = 9e-23
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
             AG ++LGI++K+V +GGAA  +GR+Q  DQ+++VDG SLVG+TQ  AA  L  T   V
Sbjct: 33  ADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNV 92

Query: 172 TLEIAKQ 178
              I ++
Sbjct: 93  RFVIGRE 99

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++GR+Q  DQ+++VDG SLVG+TQ  AA  L  T   V   I ++
Sbjct: 55  RDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 99

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 91.9 bits (229), Expect = 1e-22
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
           +  GI++KS+ K  A + +GR+Q GDQ++ VDG +L G T ++A E L  TG  V L + 
Sbjct: 31  EPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 90

Query: 177 KQG 179
           ++G
Sbjct: 91  RRG 93

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
            +GR+Q GDQ++ VDG +L G T ++A E L  TG  V L + ++G
Sbjct: 48  HDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 91.9 bits (229), Expect = 1e-22
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
                  GIY+K+V+  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V 
Sbjct: 27  NTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 86

Query: 173 LEIAKQ 178
           L + K 
Sbjct: 87  LLLEKG 92

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
            +GR+  GD++L V+G SL G T ++A E L  TG +V L + K 
Sbjct: 48  SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 91.6 bits (228), Expect = 2e-22
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
                  GIY+K+V+  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V 
Sbjct: 36  NTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 95

Query: 173 LEIAKQ 178
           L + K 
Sbjct: 96  LLLEKG 101

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
            +GR+  GD++L V+G SL G T ++A E L  TG +V L + K 
Sbjct: 57  SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 101

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 91.2 bits (227), Expect = 2e-22
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
                 IYI  +++GGAA  +GRLQ GD+LL V+  +L  +  E+A   L  T  +V L+
Sbjct: 29  IPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK 88

Query: 175 IAKQGA 180
           +AK G+
Sbjct: 89  VAKPGS 94

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
           ++GRLQ GD+LL V+  +L  +  E+A   L  T  +V L++AK G+
Sbjct: 48  KDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 90.8 bits (226), Expect = 3e-22
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             D  G++I  +++GG A  +GRL + D++L ++G  L   T E AA+ +  +G  V L 
Sbjct: 25  RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLT 84

Query: 175 IAKQG 179
           IA+ G
Sbjct: 85  IARPG 89

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
           Q+GRL + D++L ++G  L   T E AA+ +  +G  V L IA+ G
Sbjct: 44  QDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPG 89

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 90.6 bits (225), Expect = 6e-22
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
           +++    +  GIY+  + + GAA  +GRLQ GD++L V+GQ L  +  + A +     G 
Sbjct: 38  TDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGY 97

Query: 170 IVTLEIAKQGAIYHGLATLLSQPSP 194
            V+L +  +  + +G    +S PS 
Sbjct: 98  AVSLRVQHRLQVQNG---PISGPSS 119

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 65.2 bits (159), Expect = 6e-13
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
            +GRLQ GD++L V+GQ L  +  + A +     G  V+L +  +  + +G    +S PS
Sbjct: 62  LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNG---PISGPS 118

Query: 346 P 346
            
Sbjct: 119 S 119

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 89.7 bits (223), Expect = 7e-22
 Identities = 26/68 (38%), Positives = 40/68 (58%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
                 IY+  +++GGAA  +G+LQ GD+LL V+  SL  +T E+A   L  T   V L+
Sbjct: 29  IPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLK 88

Query: 175 IAKQGAIY 182
           +AK  ++Y
Sbjct: 89  VAKPTSMY 96

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY 334
           ++G+LQ GD+LL V+  SL  +T E+A   L  T   V L++AK  ++Y
Sbjct: 48  KDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 90.1 bits (224), Expect = 7e-22
 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G+   G+ ++++V GG AD +GRLQ GD +LK+ G ++ G+T E+ A+ L   G  V + 
Sbjct: 35  GKTS-GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRML 93

Query: 175 IAKQGAIYHGLATLLSQPSP 194
           +A+  A   G  ++ S PS 
Sbjct: 94  VARDPA---GDISVTSGPSS 110

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
           ++GRLQ GD +LK+ G ++ G+T E+ A+ L   G  V + +A+  A   G  ++ S PS
Sbjct: 53  RDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPA---GDISVTSGPS 109

Query: 346 P 346
            
Sbjct: 110 S 110

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 90.1 bits (224), Expect = 7e-22
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
                  G+YI++++ G  A A+GRL  GD++L+V+G SL+G+   +A + +   G  + 
Sbjct: 30  HTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMR 89

Query: 173 LEIAKQ 178
             +AK 
Sbjct: 90  FLVAKS 95

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
            +GRL  GD++L+V+G SL+G+   +A + +   G  +   +AK 
Sbjct: 51  ADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS 95

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 90.1 bits (224), Expect = 8e-22
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
              G ++LGI++K+V +GGAA  +GR+Q  D L++VDG SLVG+TQ  AA  L  T   V
Sbjct: 28  ADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRV 87

Query: 172 TLEIAKQ 178
              I ++
Sbjct: 88  RFMIGRE 94

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++GR+Q  D L++VDG SLVG+TQ  AA  L  T   V   I ++
Sbjct: 50  RDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 94

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 89.8 bits (223), Expect = 1e-21
 Identities = 26/71 (36%), Positives = 36/71 (50%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G       I I  V + GAA  +GRL AGDQ+L+V+G  L   + E+A   L +T   V 
Sbjct: 37  GKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVR 96

Query: 173 LEIAKQGAIYH 183
           L + +  A Y 
Sbjct: 97  LVVYRDEAHYR 107

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
           ++GRL AGDQ+L+V+G  L   + E+A   L +T   V L + +  A Y 
Sbjct: 58  RDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYR 107

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 89.8 bits (223), Expect = 2e-21
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             +  GIY+KSV+ G AA  NG +Q  D+++ VDG ++ G       E L   G +V L 
Sbjct: 42  TGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLT 101

Query: 175 IAKQGAIYHGLATLLSQPSPVMT 197
           + ++        + L  PS   T
Sbjct: 102 LVRRKT--SSSTSPLEPPSDRGT 122

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
            NG +Q  D+++ VDG ++ G       E L   G +V L + ++        + L  PS
Sbjct: 61  HNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKT--SSSTSPLEPPS 118

Query: 346 PVMTRA 351
              T +
Sbjct: 119 DRGTVS 124

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 88.1 bits (219), Expect = 3e-21
 Identities = 26/71 (36%), Positives = 37/71 (52%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G+      I I  V + GAA  +GRL AGDQ+L+V+G  L   T ++A   L +T   V 
Sbjct: 24  GSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 83

Query: 173 LEIAKQGAIYH 183
           L + +  A Y 
Sbjct: 84  LTLYRDEAPYK 94

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
           ++GRL AGDQ+L+V+G  L   T ++A   L +T   V L + +  A Y 
Sbjct: 45  KDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYK 94

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 87.4 bits (217), Expect = 5e-21
 Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 103 EAKLSEMSEEGAG----QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQE 158
              L + + +  G     + +G  I  +++G   + + +LQ GD + K +G +L G+  +
Sbjct: 5   NVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ 64

Query: 159 KAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPV 195
                       V++E+ +      G  +L+ +    
Sbjct: 65  VCYALFKGANGKVSMEVTRPKPGSGGSGSLVPRLLRR 101

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
            + +LQ GD + K +G +L G+  +            V++E+ +      G  +L+ +  
Sbjct: 40  IDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSGGSGSLVPRLL 99

Query: 346 PV 347
             
Sbjct: 100 RR 101

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 87.4 bits (217), Expect = 7e-21
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
                GI+I  V   GAA  +GRL+ G +LL+V+ QSL+G+T  +A + L   G  +T+ 
Sbjct: 40  DPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99

Query: 175 IAKQ 178
           +   
Sbjct: 100 VCDG 103

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 16/45 (35%), Positives = 29/45 (64%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++GRL+ G +LL+V+ QSL+G+T  +A + L   G  +T+ +   
Sbjct: 59  RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 87.1 bits (216), Expect = 8e-21
 Identities = 16/74 (21%), Positives = 35/74 (47%)

Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
               +   G    GI++  +V  G A   G LQ  D++++V+G+ L   T ++A E    
Sbjct: 29  RPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT 88

Query: 167 TGPIVTLEIAKQGA 180
               + +++ ++ +
Sbjct: 89  AKEPIVVQVLRRTS 102

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 10/47 (21%), Positives = 26/47 (55%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
           + G LQ  D++++V+G+ L   T ++A E        + +++ ++ +
Sbjct: 56  KEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 88.9 bits (220), Expect = 1e-20
 Identities = 30/69 (43%), Positives = 44/69 (63%)

Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
           +    G ++LGI++K+V +GGAA  +GR+Q  D L++VDG SLVG+TQ  AA  L  T  
Sbjct: 102 AGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKG 161

Query: 170 IVTLEIAKQ 178
            V   I ++
Sbjct: 162 RVRFMIGRE 170

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++GR+Q  D L++VDG SLVG+TQ  AA  L  T   V   I ++
Sbjct: 126 RDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 87.1 bits (216), Expect = 1e-20
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
              + R+ I++  +   G A A+GR++ GD+LL+++ Q L G + + A+  +      V 
Sbjct: 45  NKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVK 104

Query: 173 LEIAKQGAIYHGLATLLSQPSP 194
           L   +     + +A   S PS 
Sbjct: 105 LVFIRNEDAVNQMA---SGPSS 123

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
            +GR++ GD+LL+++ Q L G + + A+  +      V L   +     + +A   S PS
Sbjct: 66  ADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMA---SGPS 122

Query: 346 P 346
            
Sbjct: 123 S 123

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 86.7 bits (215), Expect = 1e-20
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
              +  L IY+ SV  GG    +GR++ GD LL VDG  L  +++ +A   L RT   + 
Sbjct: 47  SHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIV 106

Query: 173 LEIA--KQGAI 181
           L+    K+G+I
Sbjct: 107 LKALEVKEGSI 117

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA--KQGAI 333
           ++GR++ GD LL VDG  L  +++ +A   L RT   + L+    K+G+I
Sbjct: 68  RDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGSI 117

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 86.2 bits (214), Expect = 1e-20
 Identities = 25/69 (36%), Positives = 37/69 (53%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G+   GI+I  ++ GG AD +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+ 
Sbjct: 31  GEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII 90

Query: 175 IAKQGAIYH 183
              +   Y 
Sbjct: 91  AQYKPEEYS 99

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
            +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+    +   Y 
Sbjct: 50  LSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS 99

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 86.6 bits (215), Expect = 1e-20
 Identities = 30/66 (45%), Positives = 41/66 (62%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G+    L IY+K+V   GAA  +GRL+ GDQ++ V+GQSL G+T E+A   L RT   VT
Sbjct: 47  GSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVT 106

Query: 173 LEIAKQ 178
           L +   
Sbjct: 107 LMVLSS 112

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++GRL+ GDQ++ V+GQSL G+T E+A   L RT   VTL +   
Sbjct: 68  EDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS 112

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 86.7 bits (215), Expect = 1e-20
 Identities = 27/84 (32%), Positives = 39/84 (46%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G+D  GI+I  ++ GG AD +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+ 
Sbjct: 34  GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII 93

Query: 175 IAKQGAIYHGLATLLSQPSPVMTR 198
              +   Y          S     
Sbjct: 94  AQYKPEEYSRFEANSRVDSSGRIV 117

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
            +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+    +   Y          S
Sbjct: 53  LSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112

Query: 346 PVMTR 350
                
Sbjct: 113 SGRIV 117

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G+D  GI++  ++ GG AD +G L+ GD++L V+G +L   T E+AA  L R G  VT+ 
Sbjct: 35  GEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIV 94

Query: 175 IAKQGAIYHGLATLLSQPSP 194
              +   Y    +  S PS 
Sbjct: 95  AQYRPEEYSRFES--SGPSS 112

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
            +G L+ GD++L V+G +L   T E+AA  L R G  VT+    +   Y    +  S PS
Sbjct: 54  LSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFES--SGPS 111

Query: 346 P 346
            
Sbjct: 112 S 112

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
                   IY+K+++  GAA  +GRL+AGD+L++V+G  L G +QE+    L   +    
Sbjct: 33  VTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGT 92

Query: 171 VTLEIAKQGAIYH 183
           V+L + +Q   +H
Sbjct: 93  VSLLVFRQEEAFH 105

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGAIYH 335
           Q+GRL+AGD+L++V+G  L G +QE+    L   +    V+L + +Q   +H
Sbjct: 54  QDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFH 105

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 103 EAKLSEMSEEGAG----QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQE 158
              L + + +  G     + +G  I  +++G   + + +LQ GD + K +G +L G+  +
Sbjct: 11  NVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ 70

Query: 159 KAAEYLVRTGPIVTLEIAK 177
            +          V++E+ +
Sbjct: 71  VSYALFKGANGKVSMEVTR 89

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
            + +LQ GD + K +G +L G+  + +          V++E+ +
Sbjct: 46  IDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTR 89

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             +  GIY+  + + GAA  +GRLQ GD++L V+GQ L  +  + A +     G  V+L 
Sbjct: 33  VSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR 92

Query: 175 IAKQ 178
           +  +
Sbjct: 93  VQHR 96

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
            +GRLQ GD++L V+GQ L  +  + A +     G  V+L +  +
Sbjct: 52  LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 96

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 86.4 bits (214), Expect = 2e-20
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
              +  + I  +++GGAA+ +G +QAGD +L V+ + LV ++ + A E L        + 
Sbjct: 29  RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV 88

Query: 175 I---AKQGAIYHGLATLLSQPSPVMTR 198
           +     +G   H   T     +P   R
Sbjct: 89  LILRGPEGFTTHLETTFTGDGTPKTIR 115

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI---AKQGAIYHGLATLLS 342
           Q+G +QAGD +L V+ + LV ++ + A E L        + +     +G   H   T   
Sbjct: 48  QSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 107

Query: 343 QPSPVMTR 350
             +P   R
Sbjct: 108 DGTPKTIR 115

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 85.1 bits (211), Expect = 4e-20
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             D  GI+I  ++ GGAA  +GRL   D +L+V+   +  +   +A E L   GP+V L 
Sbjct: 30  VPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLV 89

Query: 175 IAKQ 178
           + ++
Sbjct: 90  VRRR 93

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
            +GRL   D +L+V+   +  +   +A E L   GP+V L + ++
Sbjct: 49  MDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 93

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 84.9 bits (210), Expect = 7e-20
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 8/81 (9%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-- 168
               G D LGI+IKS++ GGAA  +GRL+  DQL+ V+G++L+G +  +A E L R+   
Sbjct: 48  SRETGTD-LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM 106

Query: 169 -----PIVTLEIAKQGAIYHG 184
                 ++ L I ++     G
Sbjct: 107 EGNIRGMIQLVILRRSGPSSG 127

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-------PIVTLEIAKQGAIYHG 336
           ++GRL+  DQL+ V+G++L+G +  +A E L R+         ++ L I ++     G
Sbjct: 70  KDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSSG 127

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 84.3 bits (209), Expect = 7e-20
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
            GI++  + +GGAA   G LQ GD++L ++G  +     + A   L    P + L + ++
Sbjct: 38  AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLERE 97

Query: 179 GA 180
             
Sbjct: 98  AG 99

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
           + G LQ GD++L ++G  +     + A   L    P + L + ++  
Sbjct: 53  RAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 83.9 bits (208), Expect = 8e-20
 Identities = 17/67 (25%), Positives = 33/67 (49%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
           ++       GI+IK +V    A   GRL+ GD++L ++G+ +   T++   + +      
Sbjct: 29  KDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFK 88

Query: 171 VTLEIAK 177
           + LEI  
Sbjct: 89  IELEIQT 95

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
             GRL+ GD++L ++G+ +   T++   + +      + LEI  
Sbjct: 52  LCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 24/66 (36%), Positives = 34/66 (51%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G  +    I I S+ KGG A+  G +  GD++L ++  SL G    +A   L   G  VT
Sbjct: 24  GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT 83

Query: 173 LEIAKQ 178
           L+I KQ
Sbjct: 84  LKIKKQ 89

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           + G +  GD++L ++  SL G    +A   L   G  VTL+I KQ
Sbjct: 45  RTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ 89

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 82.7 bits (205), Expect = 1e-19
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
           G  +    + IKS+V  G A  +G+++ GD ++ V+   ++G T  +  +    +  G  
Sbjct: 19  GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS 78

Query: 171 VTLEIAK 177
           V LE+ +
Sbjct: 79  VDLELCR 85

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 329
            +G+++ GD ++ V+   ++G T  +  +    +  G  V LE+ +
Sbjct: 40  LDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSL-VGITQEKAAEYLVRTGPI 170
               +  LGI+++ + +G  A  +GRL+  DQ+L ++GQ+L   IT ++A   L +    
Sbjct: 42  RSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDT 101

Query: 171 VTLEIAKQ 178
           V L IA+ 
Sbjct: 102 VQLVIARG 109

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 286 QNGRLQAGDQLLKVDGQSL-VGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++GRL+  DQ+L ++GQ+L   IT ++A   L +    V L IA+ 
Sbjct: 64  RDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARG 109

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
                   IY+K+++  GAA  +GRL+AGD+L++V+G  LVG +QE+    L   +    
Sbjct: 52  VTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGT 111

Query: 171 VTLEIAKQ 178
           V+L + +Q
Sbjct: 112 VSLLVFRQ 119

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQ 330
           Q+GRL+AGD+L++V+G  LVG +QE+    L   +    V+L + +Q
Sbjct: 73  QDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
             G+   GI+IK V++   A  NG L+ GD++++VDG  L   + E+A E + + G  V 
Sbjct: 33  SNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 92

Query: 173 LEI 175
             +
Sbjct: 93  FMV 95

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +NG L+ GD++++VDG  L   + E+A E + + G  V   +
Sbjct: 54  KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             D  GI+I  V + G A   G ++ GD+LL+V+G +L G    +A E L   G  V + 
Sbjct: 42  KGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 100

Query: 175 IAKQGAIYHG 184
           + ++     G
Sbjct: 101 VWRESGPSSG 110

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHG 336
           ++ GD+LL+V+G +L G    +A E L   G  V + + ++     G
Sbjct: 64  VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPSSG 110

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 82.5 bits (204), Expect = 4e-19
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
             G+   GI+IK V++   A  NG L+ GD++++VDG  L   + E+A E + + G  V 
Sbjct: 53  SNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 112

Query: 173 LEI 175
             +
Sbjct: 113 FMV 115

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 55.9 bits (135), Expect = 8e-10
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +NG L+ GD++++VDG  L   + E+A E + + G  V   +
Sbjct: 74  KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 82.9 bits (205), Expect = 4e-19
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSL-VGITQEKAAEYLVRTGPI 170
                 ++ I++K V  G  AD + RL+  DQ+L ++   L   I+ ++A   L +T   
Sbjct: 47  RSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGS 106

Query: 171 VTLEIAKQ 178
           + L +A++
Sbjct: 107 LRLIVARE 114

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 286 QNGRLQAGDQLLKVDGQSL-VGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++ RL+  DQ+L ++   L   I+ ++A   L +T   + L +A++
Sbjct: 69  RDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVARE 114

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 82.5 bits (204), Expect = 5e-19
 Identities = 16/65 (24%), Positives = 30/65 (46%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
           E       +G YI  ++ GG+A+  G+L  G Q+L+ +G  L   T E+    + +    
Sbjct: 41  EIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGE 100

Query: 171 VTLEI 175
             + +
Sbjct: 101 AEICV 105

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           Q G+L  G Q+L+ +G  L   T E+    + +      + +
Sbjct: 64  QTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICV 105

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 81.6 bits (202), Expect = 5e-19
 Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G++ ++ +Y+  + + G A  NGR++ GDQ+++++G+S   +T  +A E +   G  V L
Sbjct: 31  GREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRL 90

Query: 174 EIAK 177
            + +
Sbjct: 91  LLKR 94

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 14/44 (31%), Positives = 28/44 (63%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
           +NGR++ GDQ+++++G+S   +T  +A E +   G  V L + +
Sbjct: 51  RNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKR 94

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 80.7 bits (200), Expect = 8e-19
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 113 GAGQDR---LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
           GA  DR     + I SV  GG AD  G ++ GD+LL VDG  L+G T  +A   L + G 
Sbjct: 23  GAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ 82

Query: 170 IVTLEIA 176
              L I 
Sbjct: 83  EAALLIE 89

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           + G ++ GD+LL VDG  L+G T  +A   L + G    L I 
Sbjct: 47  REGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIE 89

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 81.8 bits (202), Expect = 9e-19
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 80  PGTPPNRLDSSMKSHSVRDML--RQEAKLSEMSEEGAG------------QDRLGIYIKS 125
              P     S      +  +L  ++    S   + GA               RL  +I  
Sbjct: 12  DKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITK 71

Query: 126 VVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQG 179
           V KG  AD  G L+ GD++L+ +G+ L G T E+    +   +  P V L +++ G
Sbjct: 72  VKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQG 331
             G L+ GD++L+ +G+ L G T E+    +   +  P V L +++ G
Sbjct: 80  TVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 27/65 (41%), Positives = 34/65 (52%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G  +    IYI  V+ GG AD +G L+ GDQLL V+G S+ G   EKA E L      V 
Sbjct: 24  GGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVK 83

Query: 173 LEIAK 177
           L +  
Sbjct: 84  LVVRS 88

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
           ++G L+ GDQLL V+G S+ G   EKA E L      V L +  
Sbjct: 45  RHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 81.7 bits (202), Expect = 1e-18
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
           G  +    + +KSV+  G A  +G+++ GD ++ ++   ++G T     +    V  G  
Sbjct: 38  GGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQS 97

Query: 171 VTLEIAKQ 178
           V L + + 
Sbjct: 98  VNLVLCRG 105

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQ 330
           Q+G+++ GD ++ ++   ++G T     +    V  G  V L + + 
Sbjct: 59  QDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 115 GQD---RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
           G+D      + ++ ++K G A   GRL+ GD +L ++G+S  G+T  +A E +   GP +
Sbjct: 31  GRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQL 90

Query: 172 TLEIAK 177
            L I +
Sbjct: 91  HLVIRR 96

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
           + GRL+ GD +L ++G+S  G+T  +A E +   GP + L I +
Sbjct: 53  RCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 96

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 80.9 bits (200), Expect = 1e-18
 Identities = 15/67 (22%), Positives = 31/67 (46%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G+    + I+I  +   G A    +L+ GD+++ + G S  G+T  +A   L      + 
Sbjct: 47  GSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIE 106

Query: 173 LEIAKQG 179
           +++   G
Sbjct: 107 MQVVAGG 113

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
           Q  +L+ GD+++ + G S  G+T  +A   L      + +++   G
Sbjct: 68  QTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGG 113

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--I 170
           G  +    IYI  +V  GAAD +GRL++GD+L+ VDG  ++G + +   + + +      
Sbjct: 21  GGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGH 80

Query: 171 VTLEIAKQ 178
           V L + + 
Sbjct: 81  VNLTVRQT 88

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQ 330
            +GRL++GD+L+ VDG  ++G + +   + + +      V L + + 
Sbjct: 42  TDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP- 169
           ++     R  I I+S+V  G A+ +G L  GD+L+ V+   L   +  +A E L    P 
Sbjct: 36  QDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPG 95

Query: 170 IVTLEIAK 177
           +V L I  
Sbjct: 96  LVHLGICS 103

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAK 329
           ++G L  GD+L+ V+   L   +  +A E L    P +V L I  
Sbjct: 59  RSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 80.2 bits (198), Expect = 2e-18
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP---IVTLEI 175
            GIYI S++KGGA  A+GR++ GD LL+V+  +   ++ + A   L         + L +
Sbjct: 33  GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTV 92

Query: 176 AKQGA 180
           AK G 
Sbjct: 93  AKSGG 97

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP---IVTLEIAKQGA 332
            +GR++ GD LL+V+  +   ++ + A   L         + L +AK G 
Sbjct: 48  ADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG 97

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 82.6 bits (204), Expect = 3e-18
 Identities = 16/100 (16%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 82  TPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAG----QDRLGIYIKSVVKGGAADANGR 137
           T    +  ++      ++ +    L + + +  G     + +G  I  +++G   + + +
Sbjct: 95  TYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSK 154

Query: 138 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           LQ GD + K +G +L G+  +            V++E+ +
Sbjct: 155 LQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR 194

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSL--VGITQEKAAEYLVRTGP 169
           G  I  V   G   A+ RL+  D +  ++G  +    +T  K  +    T  
Sbjct: 46  GCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYE 97

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
            + +LQ GD + K +G +L G+  +            V++E+ +
Sbjct: 151 IDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR 194

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 79.7 bits (197), Expect = 4e-18
 Identities = 14/66 (21%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G   + + +Y+  + + G A+ +G+++ GD++L+++G++   +   +A E +   G  V 
Sbjct: 44  GREYN-MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVR 102

Query: 173 LEIAKQ 178
           L + + 
Sbjct: 103 LFLKRG 108

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 10/45 (22%), Positives = 27/45 (60%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++G+++ GD++L+++G++   +   +A E +   G  V L + + 
Sbjct: 64  RSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRG 108

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 79.4 bits (196), Expect = 4e-18
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
           + +     G++  GI+IK V++   A     L+ GD++L+V G  L   +  +A E +  
Sbjct: 38  TVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN 97

Query: 167 TGPIVTLEI 175
            G  V   +
Sbjct: 98  AGNPVVFIV 106

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +   L+ GD++L+V G  L   +  +A E +   G  V   +
Sbjct: 65  KTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 78.1 bits (193), Expect = 4e-18
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
            I++K + +   A  +G +Q GD +LK++G     ++   A   + R+   + + + + 
Sbjct: 22  HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 9/45 (20%), Positives = 23/45 (51%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++G +Q GD +LK++G     ++   A   + R+   + + + + 
Sbjct: 36  RDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 79.8 bits (197), Expect = 5e-18
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
           G  +    + IKS+V  G A  +G+++ GD ++ V+   ++G T  +  +    +  G  
Sbjct: 37  GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS 96

Query: 171 VTLEIAKQ 178
           V LE+ + 
Sbjct: 97  VDLELCRG 104

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQ 330
            +G+++ GD ++ V+   ++G T  +  +    +  G  V LE+ + 
Sbjct: 58  LDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG 104

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--I 170
           G    +  I I +V+  G+AD +GRL  GD+L+ VDG  + G T     + +        
Sbjct: 29  GDEPGQ-PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQ 87

Query: 171 VTLEIAKQ 178
           V L + ++
Sbjct: 88  VNLTVRRK 95

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQ 330
           ++GRL  GD+L+ VDG  + G T     + +        V L + ++
Sbjct: 49  RDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 77.9 bits (192), Expect = 1e-17
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
              +  + I  +++GGAA+ +G +QAGD +L V+ + LV ++ + A E L        + 
Sbjct: 22  RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV 81

Query: 175 I---AKQGAIYHGLATLLSQPSPVMTR 198
           +     +G   H   T     +P   R
Sbjct: 82  LILRGPEGFTTHLETTFTGDGTPKTIR 108

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 52.9 bits (127), Expect = 8e-09
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI---AKQGAIYHGLATLLS 342
           Q+G +QAGD +L V+ + LV ++ + A E L        + +     +G   H   T   
Sbjct: 41  QSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 100

Query: 343 QPSPVMTRAYK 353
             +P   R  +
Sbjct: 101 DGTPKTIRVTQ 111

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 77.9 bits (192), Expect = 2e-17
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 82  TPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAG 141
              N    SM    V  + +    L  +S  G  Q    +YI  V     A  +G + AG
Sbjct: 14  GTENLYFQSMVPGKVT-LQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAG 72

Query: 142 DQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           D++  V+G+S+ G T+ + A+ +      VT+   K
Sbjct: 73  DEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
            +G + AGD++  V+G+S+ G T+ + A+ +      VT+   K
Sbjct: 65  LDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
            + +++  I I  +      D +G L  GD +L +DG S+   +  +A + L      V 
Sbjct: 36  TSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVR 95

Query: 173 LEI 175
           LEI
Sbjct: 96  LEI 98

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           ++G L  GD +L +DG S+   +  +A + L      V LEI
Sbjct: 57  RSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEI 98

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 76.8 bits (189), Expect = 5e-17
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IV 171
           G+      + I  + KG A++ +  +Q GD++L++ G ++ G+T+ +A   +       V
Sbjct: 51  GSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPV 110

Query: 172 TLEIAKQGA 180
           T+ I ++  
Sbjct: 111 TIVIRRKSL 119

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAKQGA 332
           Q+  +Q GD++L++ G ++ G+T+ +A   +       VT+ I ++  
Sbjct: 72  QSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 75.0 bits (185), Expect = 7e-17
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G  ++++ I I  + KG AAD    L  GD +L V+G+ L   T ++A + L +TG  V 
Sbjct: 24  GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 83

Query: 173 LEI 175
           LE+
Sbjct: 84  LEV 86

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           Q   L  GD +L V+G+ L   T ++A + L +TG  V LE+
Sbjct: 45  QTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 75.5 bits (186), Expect = 8e-17
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
            +YI  V+ GG    +GRL+ GDQL+ ++ +S++G++ E+A   + R  
Sbjct: 42  LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK 90

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 12/35 (34%), Positives = 25/35 (71%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 320
           ++GRL+ GDQL+ ++ +S++G++ E+A   + R  
Sbjct: 56  KDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK 90

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
             IY+  +++GGAA  +GRLQ GD++L V+   L  +  E A   L  T  +V L++AK 
Sbjct: 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 189

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 22/85 (25%), Positives = 38/85 (44%)

Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
           ++     D   I+I  ++ GGAA  +GRL+  D +L V+   +  +T   A E L   G 
Sbjct: 26  TDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS 85

Query: 170 IVTLEIAKQGAIYHGLATLLSQPSP 194
           IV L + ++      +  +     P
Sbjct: 86  IVRLYVMRRKPPAEKVMEIKLIKGP 110

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++GRLQ GD++L V+   L  +  E A   L  T  +V L++AK 
Sbjct: 145 KDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 189

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
           Q+GRL+  D +L V+   +  +T   A E L   G IV L + ++      +  +     
Sbjct: 50  QDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG 109

Query: 346 P 346
           P
Sbjct: 110 P 110

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             D  GI+I  V + G A   G ++ GD+LL+V+G +L G    +A E L   G  V + 
Sbjct: 30  KGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 88

Query: 175 IAKQ 178
           + ++
Sbjct: 89  VWRE 92

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++ GD+LL+V+G +L G    +A E L   G  V + + ++
Sbjct: 52  VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 92

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
              ++ GIY+  V  G  A   G L+ GDQLL+ +G +L   T+++A   + +    +T+
Sbjct: 37  VSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITI 95

Query: 174 EIAKQGAIYHGLATLLSQPS 193
                  ++   +   S PS
Sbjct: 96  LAQYNPHVHQLSSHSRSGPS 115

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
           L+ GDQLL+ +G +L   T+++A   + +    +T+       ++   +   S PS
Sbjct: 60  LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGPS 115

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           GA  +   I +  V   G A   G +Q G+++L ++G+SL G T   A   L +      
Sbjct: 36  GADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQ 95

Query: 173 LEI 175
             I
Sbjct: 96  AVI 98

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           Q G +Q G+++L ++G+SL G T   A   L +        I
Sbjct: 57  QEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVI 98

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
            +    + I  + KG  A   G L+ GD+LL +D   L   + E A + L +   +V L+
Sbjct: 131 RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 190

Query: 175 IAKQ 178
           I K 
Sbjct: 191 IRKD 194

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
              I  +     A+  G LQ GD+++ ++G      T E+A + L  +     + +
Sbjct: 37  PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 92

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 55.2 bits (133), Expect = 6e-09
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           + G L+ GD+LL +D   L   + E A + L +   +V L+I K 
Sbjct: 150 RTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD 194

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           + G LQ GD+++ ++G      T E+A + L  +     + +
Sbjct: 51  RCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 92

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
           + I I  +  G  AD  G L  GD +L V+G +L     ++A   L +    +  E+   
Sbjct: 35  VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 94

Query: 179 GAIYH 183
              +H
Sbjct: 95  ALEHH 99

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
           + G L  GD +L V+G +L     ++A   L +    +  E+      +H
Sbjct: 50  RCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHH 99

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
            I++K + + G A  +G L  GD +LK++G     ++   A + + ++   + L + +  
Sbjct: 22  QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDL 81

Query: 180 AIYH 183
             +H
Sbjct: 82  EHHH 85

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 10/50 (20%), Positives = 25/50 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
           ++G L  GD +LK++G     ++   A + + ++   + L + +    +H
Sbjct: 36  KDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEHHH 85

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL----VRTG 168
           G       + + +V +GGAA+ +G +  GD+++ ++G+ +   T  +A   L     + G
Sbjct: 37  GVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGG 96

Query: 169 PIVTLEIAKQ 178
             + L +A  
Sbjct: 97  DWIDLVVAVC 106

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL----VRTGPIVTLEIAKQ 330
           ++G +  GD+++ ++G+ +   T  +A   L     + G  + L +A  
Sbjct: 58  RHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
            I++K + +   A  +G +Q GD +LK++G     ++   A   + R+   + + + +  
Sbjct: 24  HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 83

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
           ++G +Q GD +LK++G     ++   A   + R+   + + + +  
Sbjct: 38  RDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 83

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 74.0 bits (182), Expect = 4e-16
 Identities = 20/72 (27%), Positives = 33/72 (45%)

Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
           S    E      +   I  ++ G  AD   +L+ GD++L V+GQS++ +      + +  
Sbjct: 31  SLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD 90

Query: 167 TGPIVTLEIAKQ 178
            G  VTL I  Q
Sbjct: 91  AGLSVTLRIIPQ 102

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           +  +L+ GD++L V+GQS++ +      + +   G  VTL I  Q
Sbjct: 58  RCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 73.2 bits (180), Expect = 5e-16
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPI 170
           G G       I +++ GG A+ +G L  GD+L  ++G SLVG+        +   ++   
Sbjct: 31  GWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTS 90

Query: 171 VTLEIAK 177
           VTL I  
Sbjct: 91  VTLSIVH 97

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 329
           ++G L  GD+L  ++G SLVG+        +   ++   VTL I  
Sbjct: 52  RSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVH 97

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 77.1 bits (189), Expect = 8e-16
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 3/136 (2%)

Query: 62  PPGPERGDRPASAYLPNYP---GTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDR 118
           P   E G  P  A L         PP   ++ +       + + +A    +S +G  +++
Sbjct: 43  PADGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENK 102

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
           + I I  + KG AAD    L  GD +L V+G+ L   T ++A + L +TG  V LE+   
Sbjct: 103 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM 162

Query: 179 GAIYHGLATLLSQPSP 194
             +           S 
Sbjct: 163 KEVSPYFKNSAGGTSV 178

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
           Q   L  GD +L V+G+ L   T ++A + L +TG  V LE+     +           S
Sbjct: 118 QTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTS 177

Query: 346 P 346
            
Sbjct: 178 V 178

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 72.4 bits (178), Expect = 9e-16
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
               I I  V+KGG A+  G+LQ  D++  V+G S+  +    A + L ++G    + I 
Sbjct: 37  GETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIR 94

Query: 177 KQGAIYHGLATLL 189
           ++        T L
Sbjct: 95  RKKGGGWRRTTYL 107

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLL 341
           G+LQ  D++  V+G S+  +    A + L ++G    + I ++        T L
Sbjct: 54  GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTTYL 107

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 73.0 bits (179), Expect = 1e-15
 Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 81  GTPPNRLDSSMKSHSVRDMLRQEAKLSEM-------SEEGAG----QDRLGIYIKSVVKG 129
           G+  +    + K    +      + L+++          G G    Q+   + I  ++  
Sbjct: 1   GSSGSSGSKNEKEQLSKA-KASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINK 59

Query: 130 GAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 177
           GAA ++G LQ GD L+ V   +++G T  +  + L  +  G ++ ++  +
Sbjct: 60  GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 329
            +G LQ GD L+ V   +++G T  +  + L  +  G ++ ++  +
Sbjct: 64  SDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 70  RPASAYLPNYPGTPPNRLDSSMKSHSVRD--MLRQEAKLSEMSEEGAGQDRLGIYIKSVV 127
                +  +  G    R   ++    +R   +L+++ +   +S  G  +  + I I  + 
Sbjct: 3   HHHHHHHHS-SGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIH 61

Query: 128 KGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
            G  AD  G L  GD +L V+G +L     ++A   L +    +  E+
Sbjct: 62  PGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           + G L  GD +L V+G +L     ++A   L +    +  E+
Sbjct: 68  RCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             D  GI++  V   G A     LQ GD++++ +G S + I   +A   L      V L 
Sbjct: 39  RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 96

Query: 175 IAKQ 178
           I ++
Sbjct: 97  IVRE 100

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
             LQ GD++++ +G S + I   +A   L      V L I ++
Sbjct: 58  KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 72.2 bits (177), Expect = 2e-15
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIV 171
           AG + +GI++  V++   A   G L+ GDQ+L+V+      I +E+A  +L  +  G  V
Sbjct: 46  AGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 104

Query: 172 TLEIAKQGAIYH 183
           T+   K+  +Y 
Sbjct: 105 TILAQKKKDVYR 116

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGAIYH 335
           L+ GDQ+L+V+      I +E+A  +L  +  G  VT+   K+  +Y 
Sbjct: 69  LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYR 116

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
                 I I  V+ GG AD  G LQ  D+++ V+G  +  +    A + L ++G I  + 
Sbjct: 42  ENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIV 99

Query: 175 I 175
           +
Sbjct: 100 V 100

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +G LQ  D+++ V+G  +  +    A + L ++G I  + +
Sbjct: 60  DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             D  GI++  V   G A     LQ GD++++ +G S + I   +A   L      V L 
Sbjct: 31  RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 88

Query: 175 IAKQ 178
           I ++
Sbjct: 89  IVRE 92

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
             LQ GD++++ +G S + I   +A   L      V L I ++
Sbjct: 50  KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           GA   +    I ++ +GG+A   G+L+ G  +L+V+G +L G    +AA  +        
Sbjct: 26  GANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD 85

Query: 173 LE 174
            +
Sbjct: 86  RD 87

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 326
             G+L+ G  +L+V+G +L G    +AA  +         +
Sbjct: 47  NCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 69.3 bits (170), Expect = 9e-15
 Identities = 16/64 (25%), Positives = 33/64 (51%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
            +    I +  +++GGAAD +G +  GD+L +V+G  +     E+  + L ++   +T +
Sbjct: 24  DEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFK 83

Query: 175 IAKQ 178
           I   
Sbjct: 84  IIPG 87

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 10/45 (22%), Positives = 23/45 (51%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++G +  GD+L +V+G  +     E+  + L ++   +T +I   
Sbjct: 43  RSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPG 87

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 78  NYPGTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAG----QDRLGIYIKSVVKGGAAD 133
           +       R+  S+  +    +  +  ++ +  +   G     +   + I  +VKGGAA+
Sbjct: 5   SSGPITDERVYESIGHYGGETV--KIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAE 62

Query: 134 ANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
            +G L  GD++L+++G  + G    +  + L      +T  +   
Sbjct: 63  KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 9/45 (20%), Positives = 21/45 (46%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++G L  GD++L+++G  + G    +  + L      +T  +   
Sbjct: 63  KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 15/69 (21%), Positives = 33/69 (47%)

Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
           S        +   GI+I  +V GG A + G L   D++L+V+G  + G + ++  + ++ 
Sbjct: 53  SVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA 112

Query: 167 TGPIVTLEI 175
               + + +
Sbjct: 113 NSRNLIITV 121

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 7/42 (16%), Positives = 21/42 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
             G L   D++L+V+G  + G + ++  + ++     + + +
Sbjct: 80  STGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 10/57 (17%), Positives = 30/57 (52%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
              +  ++ GG     G L  GD++L+++G ++   + ++  + +  T  +++L++ 
Sbjct: 37  SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVI 93

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 8/43 (18%), Positives = 26/43 (60%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           + G L  GD++L+++G ++   + ++  + +  T  +++L++ 
Sbjct: 51  RQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVI 93

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 47  TQLHKGYSTQVLNRPPPGPERGDRPASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQEA-- 104
             + + Y   +      G  +      + LP +    P         +      R     
Sbjct: 27  YDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLK 86

Query: 105 --KLSEMSEEGAG-------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGI 155
             +L  +  EG G       +   G++I  ++KGG AD+ G LQ GD++++++G S+   
Sbjct: 87  EVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSC 145

Query: 156 TQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYES 206
           T E+    L+RT   V++++      + GL  + S P   +T   V  + S
Sbjct: 146 THEEVIN-LIRTEKTVSIKV-----RHIGLIPVKSSPDEPLTWQYVDQFVS 190

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPVMT 349
           LQ GD++++++G S+   T E+    L+RT   V++++      + GL  + S P   +T
Sbjct: 128 LQVGDEIVRINGYSISSCTHEEVIN-LIRTEKTVSIKV-----RHIGLIPVKSSPDEPLT 181

Query: 350 RAY 352
             Y
Sbjct: 182 WQY 184

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G    G+Y+K++   G  D  G L+  D+LL+V+               +  +G  + L 
Sbjct: 28  GLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV 86

Query: 175 IAK 177
           I++
Sbjct: 87  ISR 89

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
           G L+  D+LL+V+               +  +G  + L I++
Sbjct: 48  GGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           +GIYI  +     A  +GR++ GD++++++G  +    +  A            L
Sbjct: 48  IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLL 102

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
           ++GR++ GD++++++G  +    +  A            L
Sbjct: 63  KDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLL 102

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           +GIY+  V  G  A+  G L+ GDQ+L+V+ +SL  +T  +A + L  +  +V  
Sbjct: 35  VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLS 88

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
           +   L+ GDQ+L+V+ +SL  +T  +A + L  +  +V  
Sbjct: 49  EKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLS 88

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G  +  LGI++  V +G +A+  G L  GD++ +V+G SL   T   A + L  +   + 
Sbjct: 30  GGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVL-TSSSRLH 87

Query: 173 LEIAKQGAI 181
           + + + G+ 
Sbjct: 88  MMVRRMGSG 96

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 289 RLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
            L  GD++ +V+G SL   T   A + L  +   + + + + G+ 
Sbjct: 53  GLCVGDKITEVNGLSLESTTMGSAVKVL-TSSSRLHMMVRRMGSG 96

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
            + +LG YI+ V  G  A+  G L AGD+L++V+G+++   T ++    +      V L 
Sbjct: 23  EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL 81

Query: 175 IAKQ 178
           +   
Sbjct: 82  VVDP 85

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           +   L AGD+L++V+G+++   T ++    +      V L +   
Sbjct: 41  EKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 85

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
                   I  +     A+  G LQ GD+++ ++G      T E+A + L  +     + 
Sbjct: 41  ETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVT 100

Query: 175 I 175
           +
Sbjct: 101 L 101

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           + G LQ GD+++ ++G      T E+A + L  +     + +
Sbjct: 60  RCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 101

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEI 175
             +IK +  GG  D+   +  GD +  ++G+++VG      A+ L  ++   + T+++
Sbjct: 29  YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKL 86

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEI 327
               +  GD +  ++G+++VG      A+ L  ++   + T+++
Sbjct: 43  SVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKL 86

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
              +  ++ GG     G L  GD++ +++G S+   T E+  + L      +T +I 
Sbjct: 26  HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV 82

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           + G L  GD++ +++G S+   T E+  + L      +T +I 
Sbjct: 40  RQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV 82

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           L + + +V  GG+A   G+L  GDQ+L+++ +    ++ E+A + L      +++ + +
Sbjct: 31  LPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 9/42 (21%), Positives = 24/42 (57%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
           G+L  GDQ+L+++ +    ++ E+A + L      +++ + +
Sbjct: 46  GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 69.2 bits (168), Expect = 3e-12
 Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 31/242 (12%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
            IY+  +++GGAA  +GRLQ GD++L V+   L  +  E A   L  T  +V L++AK  
Sbjct: 185 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPS 244

Query: 180 AIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPG 239
             Y   +                   +   +     +   N    ++ +G  +  A  P 
Sbjct: 245 NAYLSDS------------------YAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPT 286

Query: 240 SGMNHHPVVSRQASTPSLPQASPY------PAPAPAPADPERFYQNLSVYR-------NQ 286
           S   + PV         +P+                        + + +         + 
Sbjct: 287 SPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADL 346

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSP 346
           +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+    +   Y      +     
Sbjct: 347 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLRE 406

Query: 347 VM 348
            +
Sbjct: 407 QL 408

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 68.8 bits (167), Expect = 4e-12
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 1/195 (0%)

Query: 3   SHSVRDMLRQEA-KLSEMSEEEIHRNQEIHRNQQEMHNGYVDKSPTQLHKGYSTQVLNRP 61
           S  + D++ ++A    + + + ++       N     +       T   +    ++ +  
Sbjct: 214 SVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSS 273

Query: 62  PPGPERGDRPASAYLPNYPGTPPNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGI 121
             G +            Y     + L         R ++              G+D  GI
Sbjct: 274 YLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGI 333

Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 181
           +I  ++ GG AD +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+    +   
Sbjct: 334 FISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE 393

Query: 182 YHGLATLLSQPSPVM 196
           Y      +      +
Sbjct: 394 YSRFEAKIHDLREQL 408

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 68.0 bits (165), Expect = 6e-12
 Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 74/283 (26%)

Query: 70  RPASAYLPNYPGTPPNRLDS-SMKSHSVRDMLRQEAKLSEM----------------SEE 112
           + + A+LPN   +PP  +++ ++++    +    E +  E+                ++ 
Sbjct: 23  KHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDN 82

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
               D   I+I  ++ GGAA  +GRL+  D +L V+   +  +T   A E L   G IV 
Sbjct: 83  PHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVR 142

Query: 173 LEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSH 232
           L + ++                               ++ +  +  + L     G  G+ 
Sbjct: 143 LYVMRRKPPAEK------------------------VMEIKLIKGPKGLGFSIAGGVGNQ 178

Query: 233 HPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQA 292
           H              V++     +  +                              LQ 
Sbjct: 179 HIPGDNSI------YVTKIIEGGAAHKDGR---------------------------LQI 205

Query: 293 GDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
           GD++L V+   L  +  E A   L  T  +V L++AK    Y 
Sbjct: 206 GDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYL 248

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
           Q+GRL+  D +L V+   +  +T   A E L   G IV L + ++      +  +     
Sbjct: 104 QDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG 163

Query: 346 P 346
           P
Sbjct: 164 P 164

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
                + GI+I  V  G  +   G L+ GDQ+++V+G     +  ++A   L  +  +  
Sbjct: 35  SGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTI 93

Query: 173 LEIAKQG 179
             +A  G
Sbjct: 94  SIVAAAG 100

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
             L+ GDQ+++V+G     +  ++A   L  +  +    +A  G
Sbjct: 57  VGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAG 100

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
             Q + G+Y+  +   G A   G + A D L++V+G+++   + E+  E + ++G  V  
Sbjct: 27  TVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMF 85

Query: 174 EIA 176
            + 
Sbjct: 86  LLV 88

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 9/39 (23%), Positives = 22/39 (56%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           + A D L++V+G+++   + E+  E + ++G  V   + 
Sbjct: 50  VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLV 88

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           + + R G YI+SV  G  A  +G L+A D+L++V+GQ++ G+   +    +        L
Sbjct: 23  SDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARL 81

Query: 174 EIAKQ 178
            +   
Sbjct: 82  LVVGP 86

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           L+A D+L++V+GQ++ G+   +    +        L +   
Sbjct: 46  LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 86

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           A +   G +IK V KGG AD  G L+  D +++V+G +++    EK  + +  +G  VTL
Sbjct: 22  AIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTL 80

Query: 174 EIAKQ 178
            +  +
Sbjct: 81  LVCGK 85

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           L+  D +++V+G +++    EK  + +  +G  VTL +  +
Sbjct: 45  LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGK 85

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G     LGI+I  V+    A   G LQ GDQ+L V+      I   KA E L +T   ++
Sbjct: 36  GKASQ-LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEIL-KTAREIS 92

Query: 173 LEI 175
           + +
Sbjct: 93  MRV 95

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           LQ GDQ+L V+      I   KA E L +T   +++ +
Sbjct: 59  LQEGDQVLAVNDVDFQDIEHSKAVEIL-KTAREISMRV 95

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G+D    I +  V + G A  +  L+ GD ++ ++G+S  G+   +A   + ++   + L
Sbjct: 21  GRDFHTPIMVTKVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL 79

Query: 174 EIAKQGAI 181
           ++ +  ++
Sbjct: 80  QLDRITSL 87

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 8/48 (16%), Positives = 27/48 (56%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
           ++  L+ GD ++ ++G+S  G+   +A   + ++   + L++ +  ++
Sbjct: 40  KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRITSL 87

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G+D    + I  V  G  A     L  GD +  ++G+S   +T  +A   +      +TL
Sbjct: 27  GRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTL 85

Query: 174 EIAKQGA 180
            ++   +
Sbjct: 86  SVSSGPS 92

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
             L  GD +  ++G+S   +T  +A   +      +TL ++   +
Sbjct: 48  AALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS 92

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 61.2 bits (148), Expect = 2e-11
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIV 171
              +   GIY+  V +GG A+  G LQ GD++++V+G  +  +T ++A + L + +  +V
Sbjct: 58  SEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 116

Query: 172 TLEIAKQGAIYHGLATLLSQP 192
            L + +Q        ++LS+ 
Sbjct: 117 RLLVTRQSLQKAVQQSMLSET 137

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAIYHGLATLLSQP 344
           LQ GD++++V+G  +  +T ++A + L + +  +V L + +Q        ++LS+ 
Sbjct: 82  LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLSET 137

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
              +  V++G  AD  G L+AGDQ+L V+  ++   + E   + + +   ++ + IA
Sbjct: 24  PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIA 79

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           L+AGDQ+L V+  ++   + E   + + +   ++ + IA
Sbjct: 41  LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIA 79

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G +    + +  +  GG A  + +++ GD+L+ ++G  L G  QE A   +  +  I+ L
Sbjct: 30  GLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQE-ALILIKGSFRILKL 88

Query: 174 EIAKQGA 180
            + ++ +
Sbjct: 89  IVRRRNS 95

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
            + +++ GD+L+ ++G  L G  QE A   +  +  I+ L + ++ +
Sbjct: 50  LSQKMRTGDELVNINGTPLYGSRQE-ALILIKGSFRILKLIVRRRNS 95

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 113 GAGQDRLGIYIKSVVKGGAAD-ANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
           G    ++ + +  V  G  AD    RL  GDQ++ ++G+ +   T ++   ++  +    
Sbjct: 37  GGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 96

Query: 172 TLEI 175
           + E+
Sbjct: 97  SGEL 100

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 8/41 (19%), Positives = 21/41 (51%)

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
             RL  GDQ++ ++G+ +   T ++   ++  +    + E+
Sbjct: 60  VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 100

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           + + + G +I+SV     A+A+G L+A D++++V+G  + G         +   G    L
Sbjct: 28  SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86

Query: 174 EIAKQ 178
            +  +
Sbjct: 87  LVVDR 91

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           L+A D++++V+G  + G         +   G    L +  +
Sbjct: 51  LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G +  LGIYI  V  G  A+ +G L+ GDQ+L+V+G+S + I  ++A   L  +  ++  
Sbjct: 41  GAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILT 99

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 325
           +   L+ GDQ+L+V+G+S + I  ++A   L  +  ++  
Sbjct: 60  EGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILT 99

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 59.9 bits (145), Expect = 4e-11
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 113 GAGQDRLGIYIKSVVKGGAAD-ANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
           G    ++ + +  V  G  AD    RL  GDQ++ ++G+ +   T ++   ++  +    
Sbjct: 35  GGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 94

Query: 172 TLEI 175
           + E+
Sbjct: 95  SGEL 98

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 8/41 (19%), Positives = 21/41 (51%)

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
             RL  GDQ++ ++G+ +   T ++   ++  +    + E+
Sbjct: 58  VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 98

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G+D  + + I S+  GG A     ++ GD +L +DG +  G+T  +A   +      + +
Sbjct: 22  GKDFNMPLTISSLKDGGKAA-QANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNM 80

Query: 174 EIAKQGAI 181
            + ++  +
Sbjct: 81  TLQRESDL 88

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI 333
              ++ GD +L +DG +  G+T  +A   +      + + + ++  +
Sbjct: 42  QANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRESDL 88

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 64.2 bits (155), Expect = 5e-11
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
            +   G       I S+++GG A+  G ++ G ++++++GQS+V    EK  + L  +  
Sbjct: 306 LKYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVG 364

Query: 170 IVTLEIAKQGAIYHGLATLLSQPSPV 195
            + ++     A++     L  Q +P+
Sbjct: 365 EIHMKTMP-AAMFR---LLTGQETPL 386

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 59.2 bits (142), Expect = 2e-09
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 3/149 (2%)

Query: 31  HRNQQEMHNGYVDKSPTQLHKGYSTQVLNRPPPGPERGDRPASAYLPNYPGTPPNRLDSS 90
           H  + E                Y   +        +   +  S  +        + +  S
Sbjct: 141 HVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFS 200

Query: 91  MKSHSVRDMLRQEAKLS---EMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKV 147
              +     L +         + E G G     + + +++ GG A  +G+L  GDQ++ +
Sbjct: 201 NSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI 260

Query: 148 DGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
           +G SLVG+        +        +++ 
Sbjct: 261 NGTSLVGLPLATCQGIIKGLKNQTQVKLN 289

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 48.8 bits (115), Expect = 4e-06
 Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
           + G ++ G ++++++GQS+V    EK  + L  +   + ++     A++     L  Q +
Sbjct: 329 ERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP-AAMFR---LLTGQET 384

Query: 346 PV 347
           P+
Sbjct: 385 PL 386

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 42.3 bits (98), Expect = 4e-04
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           ++G+L  GDQ++ ++G SLVG+        +        +++ 
Sbjct: 247 RSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 289

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 58.2 bits (141), Expect = 6e-11
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 177
           GI++ SV  G  A+ +  LQ  D+++ ++         ++  E +   +    + +++ +
Sbjct: 29  GIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87

Query: 178 QG 179
            G
Sbjct: 88  YG 89

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 5/46 (10%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQG 331
            +LQ  D+++ ++         ++  E +   +    + +++ + G
Sbjct: 44  SQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 123 IKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
           I S+VK  +A  NG L     + +++GQ+++G+   + A+ L  +G +VT+ I
Sbjct: 27  ITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +NG L     + +++GQ+++G+   + A+ L  +G +VT+ I
Sbjct: 38  RNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G+D  + + I S+  GG A     ++ GD +L +DG S  G+T  +A   +      + +
Sbjct: 24  GKDFNMPLTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM 82

Query: 174 EIAKQGAIYHGLATLLSQPSP 194
            + +  A       + S PS 
Sbjct: 83  TLQRASAAAKS-EPVSSGPSS 102

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSP 346
              ++ GD +L +DG S  G+T  +A   +      + + + +  A       + S PS 
Sbjct: 44  QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKS-EPVSSGPSS 102

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 61.7 bits (149), Expect = 7e-11
 Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 7/159 (4%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           + + + G +I+SV     A+A+G L+A D++++V+G  + G         +   G    L
Sbjct: 28  SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86

Query: 174 EIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHH 233
            +  +          +      +           +     + +   +   +      S  
Sbjct: 87  LVVDRETDEFFKKCRVIPSQEHLNG------PLPVPFTNGEIQKENSREALAEAALESPR 140

Query: 234 PAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPAD 272
           PA    +  +    ++ Q S P     +P    +  P  
Sbjct: 141 PALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPIL 179

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G+D  + + I  +  GG A   G +  GD +L +DG++   +T  +A   +   G  ++L
Sbjct: 22  GKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSL 80

Query: 174 EI 175
            +
Sbjct: 81  GL 82

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +  GD +L +DG++   +T  +A   +   G  ++L +
Sbjct: 45  VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGL 82

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 57.6 bits (140), Expect = 8e-11
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G+D  + + I  +  G  A  +  L  GD ++ +DG +   +T  +A   +      ++L
Sbjct: 20  GKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSL 78

Query: 174 EIAKQG 179
            + K  
Sbjct: 79  TLQKSK 84

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
            +L  GD ++ +DG +   +T  +A   +      ++L + K  
Sbjct: 41  SQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEI 175
           GI+++ V     A   G L+ GDQ+L+++G++  G + +KA + L +  G  +T+ I
Sbjct: 28  GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 96  VRDMLRQEAKLSEMSEEGA-GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVG 154
           +RD   +          G  G       I S+VK  +A  NG L     + +++GQ+++G
Sbjct: 83  IRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIG 141

Query: 155 ITQEKAAEYLVRTGPIVTLEI 175
           +   + A+ L  +G +VT+ I
Sbjct: 142 LKDSQIADILSTSGTVVTITI 162

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEI 327
           L+ GDQ+L+++G++  G + +KA + L +  G  +T+ I
Sbjct: 45  LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 10/38 (26%), Positives = 23/38 (60%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           L     + +++GQ+++G+   + A+ L  +G +VT+ I
Sbjct: 125 LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
           EE     R G ++  V  G  A   G +QAGD+L+ V G+S+ G+  E+    +   G  
Sbjct: 22  EEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSC 80

Query: 171 VTLEIAKQ 178
           V+L +   
Sbjct: 81  VSLTVVDP 88

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           +QAGD+L+ V G+S+ G+  E+    +   G  V+L +   
Sbjct: 48  MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDP 88

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           AG ++ G  IK +  G  A+A G L+  D ++ V+G+S+  +  +   E + + G   TL
Sbjct: 24  AGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL 82

Query: 174 EIAKQGA 180
            +  +  
Sbjct: 83  LVLDKEL 89

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           + + + G +I+SV     A+A+G L+A D++++V+G  + G         +   G    L
Sbjct: 28  SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86

Query: 174 EIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKER 216
            +  +          +  PS     G +    +   +Q+   R
Sbjct: 87  LVVDRETDEFFKKCRVI-PSQEHLNGPLPVPFTNGEIQKENSR 128

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G+D    I +  V + G A+A   L+ GD ++ ++GQS   +   +A   + ++   + L
Sbjct: 25  GRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRL 83

Query: 174 EIAKQGA 180
           ++ +   
Sbjct: 84  QLDRSSG 90

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 8/46 (17%), Positives = 22/46 (47%)

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
              L+ GD ++ ++GQS   +   +A   + ++   + L++ +   
Sbjct: 45  AADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG 90

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G D    + I  +  G  A     L  GD +L +DG     +T   A + +      + L
Sbjct: 24  GIDFNQPLVITRITPGSKAA-AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCL 82

Query: 174 EIAKQGAIYHGLATLLSQPSP 194
           +I +          + S PS 
Sbjct: 83  KIDRAETRLWS-PQVSSGPSS 102

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSP 346
              L  GD +L +DG     +T   A + +      + L+I +          + S PS 
Sbjct: 44  AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWS-PQVSSGPSS 102

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 115 GQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G+D    + I  V  G  A     L  GD +  +DG++   +T  +A   +      +TL
Sbjct: 22  GKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTL 80

Query: 174 EIAKQ 178
            +A+ 
Sbjct: 81  TVARS 85

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
               L  GD +  +DG++   +T  +A   +      +TL +A+ 
Sbjct: 41  ALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARS 85

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 55.1 bits (133), Expect = 7e-10
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
            + I  ++ GG     G L  GD + +V+GQ  VG       E L      V L+I 
Sbjct: 30  ELVIARILHGGMVAQQGLLHVGDIIKEVNGQP-VGSDPRALQELLRNASGSVILKIL 85

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           Q G L  GD + +V+GQ  VG       E L      V L+I 
Sbjct: 44  QQGLLHVGDIIKEVNGQP-VGSDPRALQELLRNASGSVILKIL 85

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 55.0 bits (133), Expect = 9e-10
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
            + ++SV  GGAA   G ++ GD+++KV+G  +   +  +  + L+++G  V L +    
Sbjct: 30  IVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVK-LIKSGAYVALTLLGSS 87

Query: 180 AI 181
           + 
Sbjct: 88  SG 89

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
               +  +  ++  V +   A   G L  GD +  V+G ++ GI   +  + +  +G ++
Sbjct: 30  REEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVL 88

Query: 172 TLEI 175
            LE 
Sbjct: 89  RLET 92

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           L  GD +  V+G ++ GI   +  + +  +G ++ LE 
Sbjct: 55  LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLET 92

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           AG ++ G  IK +  G  A+A G L+  D ++ V+G+S+  +  +   E + + G   TL
Sbjct: 25  AGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL 83

Query: 174 EIA 176
            + 
Sbjct: 84  LVL 86

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
            I++K V +GG A   G L  GD+++KV+G+S++G T  +    +  +   + L +
Sbjct: 62  TIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           L  GD+++KV+G+S++G T  +    +  +   + L +
Sbjct: 79  LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
            + +++V  GG A+  G LQ  D +L+++ + +      + A  +      + L + +  
Sbjct: 37  PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95

Query: 180 A 180
            
Sbjct: 96  G 96

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
            + +++V  GG A+  G LQ  D +L+++ + +      + A  +      + L + 
Sbjct: 25  PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW 80

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
            I S+++GG A+  G ++ G ++++++GQS+V    EK    L      + ++ 
Sbjct: 34  IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           + G ++ G ++++++GQS+V    EK    L      + ++ 
Sbjct: 46  RGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 55.3 bits (132), Expect = 6e-09
 Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 5/128 (3%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             D  GI++  V   G A     LQ GD++++ +G S + I   +A   L      V L 
Sbjct: 20  RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 77

Query: 175 IAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGS--- 231
           I ++          +       + G      +   V         +      GV      
Sbjct: 78  IVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASYYGVSYYRIT 137

Query: 232 HHPAPGPG 239
           +    G  
Sbjct: 138 YGETGGNS 145

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 52.9 bits (127), Expect = 9e-09
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
             +D  G  I+ + +G  A+  G L  GD++L+++G  +      +  E + ++G  VTL
Sbjct: 33  IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 91

Query: 174 EI 175
            +
Sbjct: 92  LV 93

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
             +D  G  I+ + +G  A+  G L  GD++L+++G  +      +  E + ++G  VTL
Sbjct: 21  IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 79

Query: 174 EI 175
            +
Sbjct: 80  LV 81

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
            +   I  + +   A   G LQAGD L  ++G S  G T ++  + +  +G ++T+E 
Sbjct: 47  EMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
            +   + SV  G  A   G L+AGD +  ++G+S++G+      E L+++G  ++L  
Sbjct: 33  TVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRT 89

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 12/42 (28%), Positives = 25/42 (59%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           Q   L+AGD +  ++G+S++G+      E L+++G  ++L  
Sbjct: 48  QEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRT 89

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVT 172
                G  +K +V          L+ GD +++V+ +++  +T  +  + L     G  VT
Sbjct: 23  SPGGGGQRVKQIV-DSPRS--RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT 79

Query: 173 LEIAKQGAI 181
           L + +Q  +
Sbjct: 80  LLVQRQTRL 88

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGAI 333
           ++  L+ GD +++V+ +++  +T  +  + L     G  VTL + +Q  +
Sbjct: 39  RSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTRL 88

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
                     Y++SV +GG A   G L+ GD L++V+GQ++V +   +    + + G  +
Sbjct: 38  TPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTL 96

Query: 172 TLEI 175
            +++
Sbjct: 97  MVKV 100

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 50.2 bits (120), Expect = 7e-08
 Identities = 7/57 (12%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEI 175
            + +  +    +A   G  + GD ++ +       +T  +  + L   G   + +++
Sbjct: 45  PVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 108 EMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT 167
                         Y++SV +GG A   G L+ GD L++V+GQ++V +   +    + + 
Sbjct: 54  IEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG 112

Query: 168 GPIVTLEI 175
           G  + +++
Sbjct: 113 GNTLMVKV 120

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIA 176
            G  +K ++          LQ GD + ++  Q++  +T  +  E L     G  V L I 
Sbjct: 34  TGQKVKMILDSQWC---QGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLIL 90

Query: 177 KQGAIYHGLATLLSQPSPVMTR 198
           + G         +   S  +T+
Sbjct: 91  RGGPPSPTKTAKMGSGSGQITK 112

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGAIYHGLAT 339
           +       LQ GD + ++  Q++  +T  +  E L     G  V L I + G        
Sbjct: 42  LDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTA 101

Query: 340 LLSQPSPVMTR 350
            +   S  +T+
Sbjct: 102 KMGSGSGQITK 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 1e-07
 Identities = 35/239 (14%), Positives = 84/239 (35%), Gaps = 55/239 (23%)

Query: 453 DVVETNKDKLTLEEREKALKELDEIINSIKITRNIREFGSLDLSTSDRNKDFKKSRFLSS 512
           DV +  K  L+ EE +  +   D       ++  +R F +L      + ++  + +F+  
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDA------VSGTLRLFWTLL----SKQEEMVQ-KFVEE 85

Query: 513 MLELNFSEMKIDDKDDNKFNNNNMDP-DNRELNNNISNNESEEPAEFTVGKVNLGLNSIL 571
           +L +N+  +       +        P     +     +    +   F    V+       
Sbjct: 86  VLRINYKFLM------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS------- 132

Query: 572 RQSTVVKLDLRMFKKDPRQRRLAQQQQEK------ML-SNKTS---QVPEKLSFKEKM-- 619
           R    +KL          ++ L + +  K      +L S KT     V      + KM  
Sbjct: 133 RLQPYLKL----------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 620 KMFAMETGEDGTPRDKVKISRAQRDIDNLGTPTSTNINTSNESASNV--SVNNLNSKFK 676
           K+F +      +P   +++      +  L      N  + ++ +SN+   ++++ ++ +
Sbjct: 183 KIFWLNLKNCNSPETVLEM------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
           G + +GI++  V++   A   G L+ GDQ+L+V+      I +E+A  +L+       +
Sbjct: 27  GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 84

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEI 175
             G  +K ++          L  GD +++++ Q++  ++  +  + L     G   +L I
Sbjct: 31  PTGQRVKQIL---DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87

Query: 176 AKQGA 180
            +   
Sbjct: 88  HRGSG 92

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQGA 332
           +       L  GD +++++ Q++  ++  +  + L     G   +L I +   
Sbjct: 40  LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEI 175
            + +  +    +A   G  + GD ++ + G     +T  +  + L   G   V +++
Sbjct: 37  PVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV 92

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G + +GI++  V++   A   G L+ GDQ+L+V+      I +E+A  +L+       + 
Sbjct: 19  GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVT 77

Query: 175 I 175
           I
Sbjct: 78  I 78

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
                   +Y+ SV + G A   G L+AGD++L+++ ++   +      ++L +    + 
Sbjct: 38  VEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLL 96

Query: 173 L 173
           +
Sbjct: 97  V 97

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 43.8 bits (103), Expect = 8e-06
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
                   +Y+ SV + G A   G L+AGD++L+++ ++   +      ++L  + P + 
Sbjct: 29  VEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFL--SQPSLG 85

Query: 173 LEI 175
           L +
Sbjct: 86  LLV 88

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           G+ I SVV G  A     L  G  +  ++G     +T   AA   +  G ++ +   +  
Sbjct: 26  GVQIDSVVPGSPAS--KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGT 83

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
            S     +   GIY++ V     +   G +Q GD ++KV+G+    +      +  V T 
Sbjct: 25  ASNPDFPEVSSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRP---LVDSSELQEAVLTE 80

Query: 169 PIVTLEIAKQG 179
             + LE+ +  
Sbjct: 81  SPLLLEVRRGN 91

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           G+Y+ SV+    A    RL+AGD++  +DGQ +    Q  +     + G  V +   +  
Sbjct: 6   GVYVMSVLPNMPAAG--RLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDR 63

Query: 180 AIYHGLATLLSQPS 193
             +     L   P 
Sbjct: 64  KQHEAELVLKPFPH 77

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
           + E      + G+ I  V+ G  A   G L+ GD +L +  Q    +   +     VRT 
Sbjct: 25  LREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQM---VQNAEDVYEAVRTQ 80

Query: 169 PIVTLEIAKQG 179
             + ++I +  
Sbjct: 81  SQLAVQIRRGR 91

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           GIY  SVV+   A    +++ GD+++  DG++     +        + G  VTL+I ++ 
Sbjct: 2   GIYASSVVENMPAKG--KIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREE 59

Query: 180 AIYHGLATLLSQPS 193
                  TL   P 
Sbjct: 60  KEKRVTLTLKQFPD 73

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           G+ I  V+ G  A   G L+ GD +L +  Q    +   +     VRT   + ++I +  
Sbjct: 257 GVLIHKVILGSPAHRAG-LRPGDVILAIGEQM---VQNAEDVYEAVRTQSQLAVQIRRGR 312

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Length = 388

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 116 QDRLGIYIK--SVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI--- 170
               G  +   +   GG A+  G  +AGD ++ VDG ++ G++    ++ L++ G     
Sbjct: 94  DGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSD-LLQ-GEADSQ 150

Query: 171 VTLEIAKQGA 180
           V + +   GA
Sbjct: 151 VEVVLHAPGA 160

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Length = 100

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           G+Y+ SV     A     L AGD + ++DG +     +     +  + G  V +      
Sbjct: 8   GVYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGD 65

Query: 180 AIYHGLATLLSQPSP 194
                   L +    
Sbjct: 66  KNEQADIKLTAIDKK 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	684
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.9
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.9
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.86
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.85
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.85
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.78
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.74
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.66
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.55
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.52
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.51
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.49
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.48
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.48
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.47
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.47
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.46
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.46
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.46
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.46
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.46
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.46
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.46
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.46
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.45
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.45
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.45
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.45
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.45
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.45
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.44
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.44
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.44
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.44
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.43
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.43
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.43
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.43
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.43
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.43
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.43
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.42
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.42
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.41
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.41
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.41
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.4
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.4
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.4
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.4
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.39
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.39
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.39
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.39
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.39
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.39
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.39
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.38
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.38
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.38
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.38
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.38
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.38
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.38
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.37
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.37
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.37
2ego_A	96	General receptor for phosphoinositides 1- associat	99.37
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.36
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.36
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.36
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.36
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.36
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.36
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.35
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.35
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.35
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.34
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.34
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.34
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.34
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.34
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.34
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.33
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.33
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.33
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.33
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.33
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.33
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.33
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.32
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.32
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.32
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.32
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.32
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.31
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.31
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.31
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.31
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.3
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.3
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.3
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.3
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.3
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.29
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.29
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.29
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.28
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.27
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.26
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.26
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.26
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.25
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.25
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.25
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.25
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.25
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.24
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.24
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.24
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.23
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.23
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.23
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.23
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.22
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.22
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.21
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.21
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.2
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.2
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.19
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.19
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.18
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.18
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.18
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.18
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.17
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.16
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.77
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.15
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.14
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.13
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.13
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.13
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.12
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.12
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.11
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.11
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.1
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.1
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.09
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.07
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.06
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.06
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.05
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.05
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.05
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.04
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.04
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.03
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.01
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.99
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.98
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.98
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.97
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.96
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.96
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.94
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.93
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.93
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.92
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.92
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.92
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.92
2awx_A	105	Synapse associated protein 97; membrane protein, s	98.91
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.91
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.9
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.9
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.88
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.87
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	98.87
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.86
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.86
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.85
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.85
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.84
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.84
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	98.83
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.83
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.83
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.82
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.82
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.82
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.82
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.82
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.81
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.81
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.81
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.8
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.8
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.8
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.8
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.79
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.79
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.78
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.78
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.78
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.77
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.77
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.77
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.77
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.77
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.76
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	98.76
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.76
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.75
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.75
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.75
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.74
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.74
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.74
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.74
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	98.74
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.74
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.73
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.73
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.73
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.72
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.72
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.72
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.71
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.71
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.71
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.7
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.7
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.7
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.69
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.69
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	98.68
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.67
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.67
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.66
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.66
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.66
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.66
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.65
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.64
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.63
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.63
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.63
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.62
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.62
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.61
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.61
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.61
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.6
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.59
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.59
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.58
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.58
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.57
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.57
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.55
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.55
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.54
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.54
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.54
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.54
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.53
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.53
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.53
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.52
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.52
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.51
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.51
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.51
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.51
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.5
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.49
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	98.48
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.48
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.47
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.47
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.46
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.46
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.46
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.45
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.45
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.44
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.44
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.44
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.43
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.43
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.42
2ego_A	96	General receptor for phosphoinositides 1- associat	98.41
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.41
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.41
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.41
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.4
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.4
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	98.39
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.36
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.36
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.35
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.35
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.33
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.31
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.3
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.3
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.28
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.28
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.27
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.26
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.25
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.24
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.2
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.18
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.18
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.18
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.17
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.16
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.16
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.15
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.42
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.1
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.09
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.07
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.07
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.07
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.06
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.06
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.06
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.02
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.0
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	97.98
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.92
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	97.91
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	97.86
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	97.85
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	97.84
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.84
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	97.81
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.76
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.76
3k50_A	403	Putative S41 protease; structural genomics, joint	97.75
2kl1_A	94	YLBL protein; structure genomics, structural genom	97.71
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.68
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	97.68
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.66
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.64
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	97.64
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.64
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.47
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	97.47
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.43
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.41
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.37
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.37
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	97.32
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	97.29
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.2
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	97.17
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.06
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.05
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	96.94
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	96.83
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	96.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.77
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	96.65
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	96.61
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	96.45
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	96.27
4fgm_A	597	Aminopeptidase N family protein; structural genomi	96.03
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	95.92
3k50_A	403	Putative S41 protease; structural genomics, joint	95.91
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	95.54
1k32_A	1045	Tricorn protease; protein degradation, substrate g	94.04
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	92.57

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.90  E-value=4e-23  Score=198.34  Aligned_cols=182  Identities=25%  Similarity=0.343  Sum_probs=143.4

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+++.+ .+.+|||+|.+|.+.+.  ...++||..|.|+|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus         6 ~~~v~l~~-~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   84 (196)
T 3gsl_A            6 YEEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG   84 (196)
T ss_dssp             EEEEEEEC-BTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             EEEEEEEE-CCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45566665 46789999999977542  3568999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCccccccc
Q psy2533         169 PIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVV  248 (684)
Q Consensus       169 ~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv  248 (684)
                      ..|.|+|.|..+.....                               ..+.+.+...++|+++....    +..     
T Consensus        85 ~~v~l~v~r~~~~~~~~-------------------------------~~v~l~~~~~~lG~~~~~~~----~~~-----  124 (196)
T 3gsl_A           85 SIVRLYVMRRKPPAEKV-------------------------------MEIKLIKGPKGLGFSIAGGV----GNQ-----  124 (196)
T ss_dssp             SEEEEEEEEECCCCEEE-------------------------------EEEEEEEBTTBSCEEEEESB----TSC-----
T ss_pred             CcEEEEEEecCCCcccc-------------------------------EEEEEecCCCCceEEEEccC----CCc-----
Confidence            99999999865321100                               01122333446776664110    000     


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEE
Q psy2533         249 SRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE  326 (684)
Q Consensus       249 ~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~  326 (684)
                                         ..+...|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+|+.++..|.|.
T Consensus       125 -------------------~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~  185 (196)
T 3gsl_A          125 -------------------HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLK  185 (196)
T ss_dssp             -------------------SBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEE
T ss_pred             -------------------CCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEE
Confidence                               00124589999997  789999999999999999999999999999999999999999999


Q ss_pred             EEeCCc
Q psy2533         327 IAKQGA  332 (684)
Q Consensus       327 V~R~~~  332 (684)
                      |.|++.
T Consensus       186 v~R~~~  191 (196)
T 3gsl_A          186 VAKPSN  191 (196)
T ss_dssp             EEEESC
T ss_pred             EeCCCC
Confidence            999764

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.90  E-value=1.3e-22  Score=197.92  Aligned_cols=177  Identities=18%  Similarity=0.209  Sum_probs=139.4

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCC--CCHHHHHHHHHc
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVG--ITQEKAAEYLVR  166 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g--~sh~eAV~lLk~  166 (684)
                      .....+.+.+ .+.+|||+|.+|.+.... .++||..|.++|||+++|+|++||+|++|||.++.+  ++|.+++.+++.
T Consensus        17 ~~~~~v~~~~-~~~~lG~~i~~g~~~~~~-~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~   94 (206)
T 3r0h_A           17 NKKILIELKV-EKKPMGVIVCGGKNNHVT-TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHT   94 (206)
T ss_dssp             TSCEEEEEEC-TTSCCCEEEECCSSSSCC-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHS
T ss_pred             CCEEEEEEEe-CCCCcCEEEecccCCCCC-CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHh
Confidence            3455666665 578999999998775432 479999999999999999999999999999999999  999999999999


Q ss_pred             CCCE-EEEEEEecCccccccccccCCCCCccccCCCcccccccccccccccccccccc-CCCCCCCCCCCCCCCCCCccc
Q psy2533         167 TGPI-VTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHD-MNNGVGGSHHPAPGPGSGMNH  244 (684)
Q Consensus       167 sg~~-V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k-~s~GlGfSi~~~~g~G~Gi~i  244 (684)
                      .+.. |.|+|.|........                      +         .+.+.+ ...++||.+.           
T Consensus        95 ~~~~~v~l~v~R~~~~~~~~----------------------~---------~v~l~~~~~~~lG~~~~-----------  132 (206)
T 3r0h_A           95 TYEKAVTLTVFRADPPELEK----------------------F---------NVDLMKKAGKELGLSLS-----------  132 (206)
T ss_dssp             CCSSEEEEEEECCSSCCEEE----------------------E---------EEEEECCTTCCCCEEEE-----------
T ss_pred             cCCCceEEEEEecccCCCcE----------------------E---------EEEEecCCCCccCeEEE-----------
Confidence            8888 999999875421100                      0         011111 1123444432           


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCe
Q psy2533         245 HPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  322 (684)
Q Consensus       245 kpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~  322 (684)
                                               +...|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+|+..+..
T Consensus       133 -------------------------~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~  187 (206)
T 3r0h_A          133 -------------------------PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK  187 (206)
T ss_dssp             -------------------------ECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             -------------------------cCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence                                     012478999987  78999988999999999999999999999999999999999


Q ss_pred             EEEEEEeCCccc
Q psy2533         323 VTLEIAKQGAIY  334 (684)
Q Consensus       323 VtL~V~R~~~~~  334 (684)
                      |.|.|.|+....
T Consensus       188 v~L~V~R~~~~~  199 (206)
T 3r0h_A          188 VSMEVTRPKPTL  199 (206)
T ss_dssp             EEEEEEEECCCC
T ss_pred             EEEEEEeCCCCC
Confidence            999999965433

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.86  E-value=9.6e-21  Score=218.82  Aligned_cols=186  Identities=26%  Similarity=0.353  Sum_probs=146.9

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      ....+|.+.+.. +||||+|.||.+...  ...|+||..|.+||||+++|+|++||+|++|||.++.+++|.+++.+|+.
T Consensus        58 ~~~~~v~l~k~~-~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~  136 (721)
T 2xkx_A           58 MEYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE  136 (721)
T ss_pred             ceEEEEEEEeCC-CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc
Confidence            345667776655 699999999987542  35689999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCccccc
Q psy2533         167 TGPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHP  246 (684)
Q Consensus       167 sg~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikp  246 (684)
                      ++..|.|+|.|..+...                      ..         ..+.+.+...++||++..+.    +...  
T Consensus       137 ~g~~v~l~v~R~~~~~~----------------------~~---------~~v~l~k~~~~lG~~i~~~~----~~~~--  179 (721)
T 2xkx_A          137 AGSIVRLYVMRRKPPAE----------------------KV---------MEIKLIKGPKGLGFSIAGGV----GNQH--  179 (721)
T ss_pred             cccccceEEEecccccc----------------------cc---------eeeeeeeecCCCceeeccCC----Cccc--
Confidence            99999999988753210                      00         01222233456777765211    1000  


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEE
Q psy2533         247 VVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT  324 (684)
Q Consensus       247 Iv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~Vt  324 (684)
                                            .+...|+||..|.  ++|++.|+|++||+|++|||+.+.+++|.+++.+|+..+..|.
T Consensus       180 ----------------------~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~  237 (721)
T 2xkx_A          180 ----------------------IPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVY  237 (721)
T ss_pred             ----------------------cCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCCeEE
Confidence                                  0124689999997  7899998899999999999999999999999999999999999


Q ss_pred             EEEEeCCccc
Q psy2533         325 LEIAKQGAIY  334 (684)
Q Consensus       325 L~V~R~~~~~  334 (684)
                      |.|.|.+..+
T Consensus       238 l~V~R~g~~~  247 (721)
T 2xkx_A          238 LKVAKPSNAY  247 (721)
T ss_pred             EEEEeCCccc
Confidence            9999987543

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.85  E-value=1.7e-20  Score=182.89  Aligned_cols=189  Identities=20%  Similarity=0.225  Sum_probs=142.4

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..+.|.+.++.+.+|||+|.+|.+..   .+++|..|.++|||+++|.|++||+|++|||.++.+++|.+++.+++..+.
T Consensus         7 ~~~~v~l~~~~~~~lG~~i~~~~~~~---~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   83 (200)
T 2qt5_A            7 GSTVVELMKKEGTTLGLTVSGGIDKD---GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGE   83 (200)
T ss_dssp             EEEEEEEECCTTCCCCEEEECCTTSS---SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCS
T ss_pred             CCEEEEEEeCCCCCCCEEEecccCCC---CCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45678888888999999999886643   468999999999999993499999999999999999999999999999999


Q ss_pred             EEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccc
Q psy2533         170 IVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVS  249 (684)
Q Consensus       170 ~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~  249 (684)
                      .|.|+|.|..+...             ..+.. .....+         .+.+.+...++|+.+..+..        +.  
T Consensus        84 ~v~l~v~R~~~~~~-------------~~g~~-~~~~~~---------~v~l~~~~~~lG~~l~~g~~--------~~--  130 (200)
T 2qt5_A           84 RVVLEVEYELPPVS-------------IQGSS-VMFRTV---------EVTLHKEGNTFGFVIRGGAH--------DD--  130 (200)
T ss_dssp             EEEEEEEEECCCCC-------------CCCSS-EEEEEE---------EEEEECBTTBCSEEEEEECC--------SS--
T ss_pred             eEEEEEeccCCCcc-------------cCCCc-cceeEE---------EEEEecCCCCeEEEEECCCC--------CC--
Confidence            99999988653100             00000 000001         11222334556665531000        00  


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEE
Q psy2533         250 RQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI  327 (684)
Q Consensus       250 ~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V  327 (684)
                                         .+...|+||..|.  ++|++.|+|++||+|++|||+.+.+++++++..+|+..+..|+|.|
T Consensus       131 -------------------~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v  191 (200)
T 2qt5_A          131 -------------------RNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI  191 (200)
T ss_dssp             -------------------TTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEE
T ss_pred             -------------------ccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence                               0123578999987  7888888899999999999999999999999999999888999999


Q ss_pred             EeCCcc
Q psy2533         328 AKQGAI  333 (684)
Q Consensus       328 ~R~~~~  333 (684)
                      .|.+..
T Consensus       192 ~R~~~~  197 (200)
T 2qt5_A          192 EYDVSV  197 (200)
T ss_dssp             EEEEEC
T ss_pred             EECCcc
Confidence            987543

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.85  E-value=5.5e-20  Score=179.27  Aligned_cols=185  Identities=21%  Similarity=0.193  Sum_probs=140.9

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCC-CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQ-DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~-~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ....+|.+.+....||||+|.+|.+... ...+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+|+..
T Consensus         5 ~~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   84 (196)
T 1p1d_A            5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   84 (196)
T ss_dssp             CEEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTC
T ss_pred             cEEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3456777888888999999999865432 356899999999999999999999999999999999999999999999987


Q ss_pred             --CCEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccc-cCCCCCCCCCCCCCCCCCCccc
Q psy2533         168 --GPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLH-DMNNGVGGSHHPAPGPGSGMNH  244 (684)
Q Consensus       168 --g~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~-k~s~GlGfSi~~~~g~G~Gi~i  244 (684)
                        +..|.|.|.|.......       |...           ..         ...+. +...++|+.+.....       
T Consensus        85 ~~g~~v~l~v~R~~~~~~~-------~~~~-----------~~---------~v~l~~~~~~~lG~~~~~~~~-------  130 (196)
T 1p1d_A           85 SITSKVTLEIEFDVAESVI-------PSSG-----------TF---------HVKLPKKHSVELGITISSPSS-------  130 (196)
T ss_dssp             CSSSEEEEEEEECSCSCCB-------CCSS-----------CE---------EEEECCCSSCCCCCEEECSCS-------
T ss_pred             CCCCeEEEEEEecCCCCCC-------CCCC-----------cE---------EEEecCCCCCCcCEEEECCCC-------
Confidence              78899999987642110       0000           00         00111 122334444431000       


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCe
Q psy2533         245 HPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  322 (684)
Q Consensus       245 kpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~  322 (684)
                                              .....|+||..|.  ++|++.|+|++||+|++|||..+.++++.++..+|+..+..
T Consensus       131 ------------------------~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~  186 (196)
T 1p1d_A          131 ------------------------RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL  186 (196)
T ss_dssp             ------------------------SSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC
T ss_pred             ------------------------CCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE
Confidence                                    0013478999987  78888888999999999999999999999999999988889


Q ss_pred             EEEEEEeCC
Q psy2533         323 VTLEIAKQG  331 (684)
Q Consensus       323 VtL~V~R~~  331 (684)
                      |.|.|.|.+
T Consensus       187 v~l~v~R~~  195 (196)
T 1p1d_A          187 VKLKIRKDE  195 (196)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            999999865

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.78  E-value=3.6e-18  Score=197.41  Aligned_cols=207  Identities=25%  Similarity=0.313  Sum_probs=139.1

Q ss_pred             eEEEEEecCCCcccEEEEeccCCC--CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAG--QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~--~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      .+|.+.+ ...+|||+|.+|.+..  .+..|++|..|.+||||+++|+|++||+|++|||.++.+++|.+++.+|+..+.
T Consensus       156 ~~v~l~k-~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  234 (721)
T 2xkx_A          156 MEIKLIK-GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD  234 (721)
T ss_pred             eeeeeee-ecCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCC
Confidence            3455544 3567999999875432  124589999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCccccccccccCCCCCccccCCCcc---cc-ccc--------ccc-c-c---------------ccccccc
Q psy2533         170 IVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKT---YE-STI--------SVQ-Q-R---------------KERSSQN  220 (684)
Q Consensus       170 ~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~---se-s~l--------s~~-~-~---------------~~~~sv~  220 (684)
                      .|.|+|.|.........  ...|.......+...   .. ..+        +.. . .               .....+.
T Consensus       235 ~v~l~V~R~g~~~~~~~--~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~  312 (721)
T 2xkx_A          235 VVYLKVAKPSNAYLSDS--YAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIV  312 (721)
T ss_pred             eEEEEEEeCCcccccCC--CCCCCcccCCCCCcccccCCcccccccccccCCCCCCcccCCcccccccccccccceEEEE
Confidence            99999999875421110  000000000000000   00 000        000 0 0               0000001


Q ss_pred             cccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEE
Q psy2533         221 LHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLK  298 (684)
Q Consensus       221 L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~  298 (684)
                      +.+...++|+++.                                  +.....|+||..|.  |+|++.|+|++||+|++
T Consensus       313 l~~~~~~lG~~i~----------------------------------~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~  358 (721)
T 2xkx_A          313 IHRGSTGLGFNIV----------------------------------GGEDGEGIFISFILAGGPADLSGELRKGDQILS  358 (721)
T ss_pred             EEECCCCccEEEe----------------------------------ccCCCCCeEEEEeCCCChHHhcCCCccCCEEEE
Confidence            1111111111111                                  11124689999997  78999999999999999


Q ss_pred             ECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Q psy2533         299 VDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH  335 (684)
Q Consensus       299 VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~  335 (684)
                      |||+++.++++++++.+|+..+..|+|.|.|....+.
T Consensus       359 VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~~~~~~  395 (721)
T 2xkx_A          359 VNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS  395 (721)
T ss_pred             ECCEECCCCCHHHHHHHHHhcCCeEEEEEEeCchhhh
Confidence            9999999999999999999999999999999876554

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.74  E-value=6e-19  Score=190.48  Aligned_cols=166  Identities=19%  Similarity=0.319  Sum_probs=76.2

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--  167 (684)
                      ..+.|.+.+..+++|||+|.++ +.+...++++|..|.+||||+++|+|++||+|++|||.++.+++|.+++.+|+..  
T Consensus       204 ~~~~V~i~k~~ge~lG~~i~~~-~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~  282 (388)
T 3suz_A          204 NCKELQLEKHKGEILGVVVVES-GWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKN  282 (388)
T ss_dssp             CCEEEEECCCSSCCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTT
T ss_pred             cceEEEEECCCCCceeEEEEec-CCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccC
Confidence            4578888888889999999974 2233345799999999999999999999999999999999999999999999986  


Q ss_pred             CCEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccc
Q psy2533         168 GPIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPV  247 (684)
Q Consensus       168 g~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpI  247 (684)
                      +..|.|+|.|.+....                        +..         ...+...++|+.+.              
T Consensus       283 ~~~v~l~v~r~~~~~~------------------------v~l---------~~~~~~~~lG~~i~--------------  315 (388)
T 3suz_A          283 QTQVKLNIVSCPPVTT------------------------VLI---------KRPDLKYQLGFSVQ--------------  315 (388)
T ss_dssp             CSCEEEEEEECCSCC-----------------------------------------------------------------
T ss_pred             CCccccccccccccce------------------------eeE---------eecCCCCccceEEe--------------
Confidence            4459999988643210                        000         00011223444432              


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEE
Q psy2533         248 VSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL  325 (684)
Q Consensus       248 v~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL  325 (684)
                                                +.||..|.  |+|++.| |++||+|++|||+++.+++|++++.+|+.++..|+|
T Consensus       316 --------------------------~g~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L  368 (388)
T 3suz_A          316 --------------------------NGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHM  368 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------cCEEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence                                      01444444  6777777 999999999999999999999999999999999999


Q ss_pred             EEEeC
Q psy2533         326 EIAKQ  330 (684)
Q Consensus       326 ~V~R~  330 (684)
                      .|.+.
T Consensus       369 ~V~p~  373 (388)
T 3suz_A          369 KTMPA  373 (388)
T ss_dssp             -----
T ss_pred             EEEec
Confidence            99754

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.66  E-value=4.2e-15  Score=141.31  Aligned_cols=158  Identities=23%  Similarity=0.360  Sum_probs=119.1

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-C
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-G  168 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g  168 (684)
                      ..+.|.+.+....+|||.+....      .+++|..|.++|||+++| |++||+|++|||.++.++++..+..+++.. +
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~~~------~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~   76 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG   76 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CCEEEEEEeCCCCcEeEEEEeCC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            35778888878889999998642      479999999999999999 999999999999999999997788888765 4


Q ss_pred             CEEEEEEEecCccccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCccccccc
Q psy2533         169 PIVTLEIAKQGAIYHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVV  248 (684)
Q Consensus       169 ~~V~LvV~R~~~~~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv  248 (684)
                      ..|.|+|.+......                        +....          .....+|+.+.               
T Consensus        77 ~~v~l~vr~~~~~~~------------------------v~l~~----------~~~~~lG~~~~---------------  107 (166)
T 1w9e_A           77 EKITMTIRDRPFERT------------------------ITMHK----------DSTGHVGFIFK---------------  107 (166)
T ss_dssp             SEEEEEEECCTTCEE------------------------EEEEC----------CTTSCCSEEEE---------------
T ss_pred             CEEEEEEEcCCCcEE------------------------EEEec----------CCCCcEeEEEe---------------
Confidence            589999944311100                        00000          00112332221               


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEE
Q psy2533         249 SRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE  326 (684)
Q Consensus       249 ~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~  326 (684)
                                              .| +|..+.  ++|++.| |++||+|++|||..+.++.+.++...++..+..++|.
T Consensus       108 ------------------------~g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~  161 (166)
T 1w9e_A          108 ------------------------NG-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT  161 (166)
T ss_dssp             ------------------------TT-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             ------------------------CC-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEE
Confidence                                    12 555554  6777776 9999999999999999999999998899999988888


Q ss_pred             EEe
Q psy2533         327 IAK  329 (684)
Q Consensus       327 V~R  329 (684)
                      |..
T Consensus       162 v~~  164 (166)
T 1w9e_A          162 IMP  164 (166)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            753

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=131.58  Aligned_cols=91  Identities=25%  Similarity=0.365  Sum_probs=82.7

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.+.+..+|||+|.||.+......|+||..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+.++
T Consensus        23 ~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~  102 (118)
T 3b76_A           23 MHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTS  102 (118)
T ss_dssp             EEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCC
T ss_pred             CCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45678888877789999999998765555678999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|..
T Consensus       103 ~~v~L~v~R~~  113 (118)
T 3b76_A          103 SSIVLKALEVK  113 (118)
T ss_dssp             SEEEEEEEEEE
T ss_pred             CeEEEEEEECC
Confidence            99999998864

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.52  E-value=3.9e-14  Score=129.52  Aligned_cols=92  Identities=21%  Similarity=0.320  Sum_probs=83.0

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecC-CCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLV-GITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~-g~sh~eAV~lLk~s  167 (684)
                      ...+.|.+.+....+|||+|.||.+......++||..|.++|||+++|+|++||+|++|||.++. +++|.+++.+|+..
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~  103 (128)
T 2db5_A           24 RQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT  103 (128)
T ss_dssp             CEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHC
T ss_pred             CceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            34667888887778999999998876655678999999999999999999999999999999998 99999999999999


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus       104 ~~~v~l~v~r~~~  116 (128)
T 2db5_A          104 TGSLRLIVAREPV  116 (128)
T ss_dssp             CSEEEEEEEECCC
T ss_pred             CCeEEEEEEcCCC
Confidence            9999999999864

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.51  E-value=3.1e-14  Score=129.79  Aligned_cols=92  Identities=17%  Similarity=0.319  Sum_probs=78.0

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.|....+|||+|.||.+......++||..|.++|||+++|.|++||+|++|||.++.+++|.+++.+|+.++
T Consensus        23 ~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  102 (120)
T 2iwo_A           23 MGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS  102 (120)
T ss_dssp             --CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred             CCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45678888888888999999998765544568999999999999999559999999999999999999999999999999


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      +.|.|+|.|...
T Consensus       103 ~~v~l~v~r~g~  114 (120)
T 2iwo_A          103 GSIEMQVVAGGD  114 (120)
T ss_dssp             SEEEEEEECCTT
T ss_pred             CeEEEEEEECCc
Confidence            999999998764

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.49  E-value=9.6e-14  Score=119.74  Aligned_cols=77  Identities=22%  Similarity=0.378  Sum_probs=70.9

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..++|++.|...++|||++.+|          +|..|.+||||+++| |++||+|++|||+++.+++|++++.+|+.++.
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~~g----------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~   72 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGT   72 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             ceEEEEEEECCCCCeEEEEECC----------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCC
Confidence            4678999998889999999864          478999999999999 99999999999999999999999999999999


Q ss_pred             EEEEEEEe
Q psy2533         170 IVTLEIAK  177 (684)
Q Consensus       170 ~V~LvV~R  177 (684)
                      .|+|+|..
T Consensus        73 ~V~L~v~p   80 (82)
T 1r6j_A           73 VVTITIMP   80 (82)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999864

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.48  E-value=1.7e-13  Score=121.08  Aligned_cols=83  Identities=65%  Similarity=0.966  Sum_probs=76.2

Q ss_pred             cCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEec
Q psy2533          99 MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  178 (684)
Q Consensus        99 ~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~  178 (684)
                      +...+|||+|.+|.+......+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+..|.|+|.|.
T Consensus        18 ~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   97 (106)
T 3axa_A           18 KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ   97 (106)
T ss_dssp             ECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            57889999999987665556799999999999999999999999999999999999999999999999999999999997


Q ss_pred             Ccc
Q psy2533         179 GAI  181 (684)
Q Consensus       179 ~~~  181 (684)
                      ...
T Consensus        98 ~~~  100 (106)
T 3axa_A           98 GAI  100 (106)
T ss_dssp             CSS
T ss_pred             Ccc
Confidence            654

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.48  E-value=1.9e-13  Score=125.94  Aligned_cols=91  Identities=19%  Similarity=0.312  Sum_probs=77.4

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.+ ...||||+|.||.+......++||..|.+||||+++|.|++||+|++|||.++.+++|.+|+.+|+.++
T Consensus        28 ~~~~~v~l~k-~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  106 (130)
T 1i16_A           28 ATVCTVTLEK-MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP  106 (130)
T ss_dssp             EEEEEEEEET-TSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred             CcEEEEEEEc-CCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3455666665 468999999998775444568999999999999999669999999999999999999999999999985


Q ss_pred             C-EEEEEEEecCc
Q psy2533         169 P-IVTLEIAKQGA  180 (684)
Q Consensus       169 ~-~V~LvV~R~~~  180 (684)
                      + .|.|+|.|...
T Consensus       107 ~~~v~l~v~r~~~  119 (130)
T 1i16_A          107 DGPVTIVIRRKSL  119 (130)
T ss_dssp             SSEEEEEEEEESS
T ss_pred             CceEEEEEEeCCC
Confidence            4 69999988753

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.47  E-value=2.1e-13  Score=122.63  Aligned_cols=93  Identities=19%  Similarity=0.267  Sum_probs=81.9

Q ss_pred             CCCceEEEEEecCCCcccEEEEeccCCC------CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHH
Q psy2533          88 DSSMKSHSVRDMLRQEAKLSEMSEEGAG------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAA  161 (684)
Q Consensus        88 ~s~~~~V~v~k~~~~GLGfsI~GG~~~~------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV  161 (684)
                      ....++|.+.+..+.+|||+|.||.+..      ....++||..|.++|||+++|+|++||+|++|||.++.+++|.+++
T Consensus        13 ~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~   92 (117)
T 2ehr_A           13 WGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAV   92 (117)
T ss_dssp             BCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHH
T ss_pred             CCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            3456788888888899999999987643      1245899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCEEEEEEEecCc
Q psy2533         162 EYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       162 ~lLk~sg~~V~LvV~R~~~  180 (684)
                      .+|+..+..|.|+|.|...
T Consensus        93 ~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           93 EAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHHHTSCSSEEEEECCBSC
T ss_pred             HHHHcCCCeEEEEEEECCC
Confidence            9999999999999988654

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.47  E-value=1.9e-13  Score=121.21  Aligned_cols=85  Identities=20%  Similarity=0.300  Sum_probs=73.6

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--  167 (684)
                      ..+.|.+.|. ..+|||+|.++ +    ...+||++|.+||+|+++|+|++||+|++|||+++.+++|.+++.+|+++  
T Consensus         5 ~~k~V~l~K~-~~~LG~tI~~~-g----~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~   78 (95)
T 3gge_A            5 IEKEVNVYKS-EDSLGLTITDN-G----VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK   78 (95)
T ss_dssp             EEEEEEEECC-SSCCCEEEECS-S----SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred             eEEEEEEEEC-CCCceEEEEcC-C----CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCC
Confidence            4578888875 48999999964 2    23589999999999999999999999999999999999999999999986  


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..++|.+.+...
T Consensus        79 g~~~~L~lv~p~~   91 (95)
T 3gge_A           79 EELFTMKLIEPKK   91 (95)
T ss_dssp             TCEEEEEEEEECS
T ss_pred             CCEEEEEEECccc
Confidence            5588998887654

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.46  E-value=2.5e-13  Score=123.10  Aligned_cols=90  Identities=30%  Similarity=0.429  Sum_probs=78.5

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ..+.|.+.+.. .||||+|.||.+...  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..
T Consensus        24 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  102 (117)
T 2byg_A           24 TVVEIKLFKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT  102 (117)
T ss_dssp             EEEEEEEECBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEEeCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45666776654 899999999876432  346899999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus       103 g~~v~l~v~R~~~  115 (117)
T 2byg_A          103 SEVVYLKVGKPTT  115 (117)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEeCCc
Confidence            9999999998753

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.46  E-value=3.9e-13  Score=119.61  Aligned_cols=91  Identities=24%  Similarity=0.267  Sum_probs=78.5

Q ss_pred             CCCceEEEEEecCCCcccEEEEeccCCCC-CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          88 DSSMKSHSVRDMLRQEAKLSEMSEEGAGQ-DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        88 ~s~~~~V~v~k~~~~GLGfsI~GG~~~~~-~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      ....+.|.+.|.. .+|||+|.+|.+... ...++||..|.++|||+++|+|++||+|++|||.++.+++|.+++.+|+.
T Consensus        13 ~~~~~~v~l~k~~-~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   91 (108)
T 2d92_A           13 SPEVKIVELVKDC-KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA   91 (108)
T ss_dssp             CSSCEEEEEEECS-SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred             CCceEEEEEEECC-CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3456788887764 799999999866321 35689999999999999999999999999999999999999999999998


Q ss_pred             C-CCEEEEEEEecC
Q psy2533         167 T-GPIVTLEIAKQG  179 (684)
Q Consensus       167 s-g~~V~LvV~R~~  179 (684)
                      . +..|.|+|.|..
T Consensus        92 ~~~~~v~l~v~R~~  105 (108)
T 2d92_A           92 VPPGLVHLGICSGP  105 (108)
T ss_dssp             SCSEEEEEEEECCC
T ss_pred             CCCCeEEEEEEcCC
Confidence            6 568999998864

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.46  E-value=6.5e-14  Score=129.45  Aligned_cols=81  Identities=28%  Similarity=0.434  Sum_probs=74.3

Q ss_pred             CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC--CEEEEEEEe
Q psy2533         100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAK  177 (684)
Q Consensus       100 ~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg--~~V~LvV~R  177 (684)
                      ...+|||+|.||.+...+..++||..|.++|||+++|+|++||+|++|||.++.+++|.+++.+|+.+.  ..|.|+|.|
T Consensus        46 ~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R  125 (131)
T 1wfg_A           46 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR  125 (131)
T ss_dssp             SCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEE
T ss_pred             CCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEc
Confidence            678999999998876656679999999999999999999999999999999999999999999999874  889999999


Q ss_pred             cCc
Q psy2533         178 QGA  180 (684)
Q Consensus       178 ~~~  180 (684)
                      ..+
T Consensus       126 ~g~  128 (131)
T 1wfg_A          126 SGP  128 (131)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            764

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.46  E-value=2.5e-13  Score=116.71  Aligned_cols=87  Identities=33%  Similarity=0.487  Sum_probs=77.9

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      +...+|.+.+.+..+|||++.++.+    ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   78 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRN----DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL   78 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSS----SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3456788888888999999998654    248999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|..
T Consensus        79 ~~v~l~v~R~~   89 (92)
T 2qg1_A           79 GTVTLEVGRIS   89 (92)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEccc
Confidence            99999998875

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.46  E-value=4.9e-13  Score=123.85  Aligned_cols=93  Identities=18%  Similarity=0.222  Sum_probs=81.3

Q ss_pred             CCCCceEEEEEecCCCcccEEEEeccCCC---------CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCH
Q psy2533          87 LDSSMKSHSVRDMLRQEAKLSEMSEEGAG---------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQ  157 (684)
Q Consensus        87 ~~s~~~~V~v~k~~~~GLGfsI~GG~~~~---------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh  157 (684)
                      .....++|++.|....+|||+|.++.+..         ....|++|..|.+||||+++| |++||+|++|||.++.++++
T Consensus        24 ~~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~  102 (132)
T 3l4f_D           24 YIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH  102 (132)
T ss_dssp             CCCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCH
T ss_pred             cCCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            34567789999988899999999987632         122379999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHcCCCEEEEEEEecCc
Q psy2533         158 EKAAEYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       158 ~eAV~lLk~sg~~V~LvV~R~~~  180 (684)
                      .+++.+|+..+..|.|+|.+...
T Consensus       103 ~~~~~~l~~~g~~v~l~v~~~~~  125 (132)
T 3l4f_D          103 RQVVNMIRQGGNTLMVKVVMVTR  125 (132)
T ss_dssp             HHHHHHHHHTTTEEEEEEECCCC
T ss_pred             HHHHHHHHcCCCEEEEEEEECCC
Confidence            99999999999999999987653

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.46  E-value=8.8e-14  Score=124.10  Aligned_cols=90  Identities=27%  Similarity=0.427  Sum_probs=78.3

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--  167 (684)
                      ...+|.+.+....+|||+|.||.+. ....++||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+.+  
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~   83 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVH   83 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSS-TTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHT
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCC-CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence            4567777777789999999998653 2356899999999999999999999999999999999999999999999976  


Q ss_pred             -CCEEEEEEEecCc
Q psy2533         168 -GPIVTLEIAKQGA  180 (684)
Q Consensus       168 -g~~V~LvV~R~~~  180 (684)
                       +..|.|+|.|...
T Consensus        84 ~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           84 KPGPIVLTVAKSGG   97 (108)
T ss_dssp             SSSCEEEEEECCCC
T ss_pred             CCCeEEEEEEeCCC
Confidence             4579999988653

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.46  E-value=2.1e-13  Score=123.18  Aligned_cols=92  Identities=16%  Similarity=0.252  Sum_probs=79.7

Q ss_pred             CceEEEEEecC------CCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHH
Q psy2533          90 SMKSHSVRDML------RQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAA  161 (684)
Q Consensus        90 ~~~~V~v~k~~------~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV  161 (684)
                      ..+.+.+.+..      ..+|||+|.||.+.+.  ...++||..|.++|||+++|+|++||+|++|||.++.+++|.+++
T Consensus        12 ~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~   91 (117)
T 1ujd_A           12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ   91 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence            44566676665      5799999999876432  345899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCEEEEEEEecCcc
Q psy2533         162 EYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       162 ~lLk~sg~~V~LvV~R~~~~  181 (684)
                      .+|+..+..|.|+|.|....
T Consensus        92 ~~l~~~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           92 SIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             HHHSCCSSCEEEEEESSCCC
T ss_pred             HHHhcCCCEEEEEEEECCcc
Confidence            99999999999999987653

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.46  E-value=3.3e-13  Score=120.84  Aligned_cols=87  Identities=23%  Similarity=0.440  Sum_probs=74.6

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC-
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-  168 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg-  168 (684)
                      ..+.+.+.+  +.||||+|.||.+... ..++||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+.+. 
T Consensus        15 ~~~~v~l~k--~~glG~~i~gg~~~~~-~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~   91 (109)
T 1wi4_A           15 AFRVITVTK--ETGLGLKILGGINRNE-GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKL   91 (109)
T ss_dssp             TEEEEEECC--SSCCCEEEEECSSSSS-CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCC
T ss_pred             cEEEEEEeC--CCccCEEEEeccCCCC-CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcccc
Confidence            456666655  3899999999876542 347999999999999999999999999999999999999999999999765 


Q ss_pred             ---CEEEEEEEecC
Q psy2533         169 ---PIVTLEIAKQG  179 (684)
Q Consensus       169 ---~~V~LvV~R~~  179 (684)
                         ..+.|.|.|..
T Consensus        92 r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           92 RSESPWEIAFIRSG  105 (109)
T ss_dssp             SSSSCEEEEEECCC
T ss_pred             CCCceEEEEEEeCC
Confidence               67889888865

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.45  E-value=2.2e-13  Score=121.09  Aligned_cols=84  Identities=32%  Similarity=0.466  Sum_probs=74.1

Q ss_pred             EecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEE
Q psy2533          97 RDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE  174 (684)
Q Consensus        97 ~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~Lv  174 (684)
                      ....+.+|||+|+||.+...  ...+++|..|.++|||+++|+|++||+|++|||.++.+++|.+++.+++..+..|.|+
T Consensus         8 ~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~   87 (106)
T 4amh_A            8 VPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLK   87 (106)
T ss_dssp             ----CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence            34578899999999987653  4558999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCc
Q psy2533         175 IAKQGA  180 (684)
Q Consensus       175 V~R~~~  180 (684)
                      |.|...
T Consensus        88 v~R~~~   93 (106)
T 4amh_A           88 VAKPGS   93 (106)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            999764

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.45  E-value=1.2e-13  Score=123.99  Aligned_cols=92  Identities=25%  Similarity=0.398  Sum_probs=82.1

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecC-CCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLV-GITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~-g~sh~eAV~lLk~s  167 (684)
                      ...+.|.+.+..+.+|||+|.++.+......|++|..|.++|||+++|+|++||+|++|||.++. ++++.+++.+|+..
T Consensus        19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~   98 (117)
T 2o2t_A           19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA   98 (117)
T ss_dssp             SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC
T ss_pred             CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            45678888888889999999998765545578999999999999999999999999999999998 99999999999999


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus        99 ~~~v~l~v~R~~~  111 (117)
T 2o2t_A           99 KDTVQLVIARGSL  111 (117)
T ss_dssp             CSEEEEEEESSCC
T ss_pred             CCEEEEEEEeCCc
Confidence            9999999998764

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.45  E-value=1.3e-13  Score=125.00  Aligned_cols=90  Identities=37%  Similarity=0.498  Sum_probs=78.9

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..+.|.+.|.. .||||+|.+|.+...+..|++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..++
T Consensus        25 ~~~~v~L~k~~-~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  103 (117)
T 2fne_A           25 QCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG  103 (117)
T ss_dssp             EEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             ccEEEEEEeCC-CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            34567776654 79999999987654445689999999999999999999999999999999999999999999999888


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .|.|+|.|...
T Consensus       104 ~v~l~v~R~g~  114 (117)
T 2fne_A          104 TVTLMVLSSDE  114 (117)
T ss_dssp             SEEEEEEECSC
T ss_pred             eEEEEEEeCCc
Confidence            89999998763

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.45  E-value=2.7e-13  Score=119.87  Aligned_cols=90  Identities=20%  Similarity=0.273  Sum_probs=78.5

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.+..+.+|||+|.+|.+..   .+++|..|.++|||+++|.|++||+|++|||.++.++++.+++.+|+.++
T Consensus         8 ~~~~~v~l~~~~~~~lG~~l~~g~~~~---~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~   84 (103)
T 2dc2_A            8 GPIRKVLLLKEDHEGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR   84 (103)
T ss_dssp             -CEEEEEEECCSSSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred             CCcEEEEEEeCCCCccCEEEEeccCCC---CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            345778888888899999999986543   47999999999999997339999999999999999999999999999999


Q ss_pred             CEEEEEEEecCcc
Q psy2533         169 PIVTLEIAKQGAI  181 (684)
Q Consensus       169 ~~V~LvV~R~~~~  181 (684)
                      +.|.|+|.+....
T Consensus        85 ~~v~l~v~~~~~~   97 (103)
T 2dc2_A           85 GEIEFEVVYVALE   97 (103)
T ss_dssp             SEEEEEEEECC--
T ss_pred             CcEEEEEEecCCc
Confidence            9999999987653

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.45  E-value=4.2e-13  Score=118.50  Aligned_cols=90  Identities=30%  Similarity=0.429  Sum_probs=78.0

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ..+|.+.+.. .+|||+|.||.+...  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus         4 ~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (105)
T 2awx_A            4 IMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTS   82 (105)
T ss_dssp             EEEEEEECBT-TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCC
T ss_pred             EEEEEEEECC-CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4566676654 799999999876432  3458999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCcc
Q psy2533         169 PIVTLEIAKQGAI  181 (684)
Q Consensus       169 ~~V~LvV~R~~~~  181 (684)
                      ..|.|+|.|....
T Consensus        83 ~~v~l~v~R~~~~   95 (105)
T 2awx_A           83 DFVYLKVAKPTSM   95 (105)
T ss_dssp             SEEEEEEECCCC-
T ss_pred             CeEEEEEEcCCCC
Confidence            9999999997654

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.45  E-value=5.1e-13  Score=115.61  Aligned_cols=89  Identities=31%  Similarity=0.474  Sum_probs=78.6

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ...+|.+.+ ...+|||+|.+|.+......+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+.
T Consensus         5 ~~~~v~l~k-~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~   83 (96)
T 1d5g_A            5 DIFEVELAK-NDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ   83 (96)
T ss_dssp             CEEEEEEEC-SSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCS
T ss_pred             CEEEEEEEe-CCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            455666665 4689999999987765555689999999999999999999999999999999999999999999999889


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .|.|+|.|..
T Consensus        84 ~v~l~v~R~~   93 (96)
T 1d5g_A           84 VVHLLLEKGQ   93 (96)
T ss_dssp             EEEEEEECCS
T ss_pred             eEEEEEEcCC
Confidence            9999998865

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.44  E-value=4e-13  Score=115.12  Aligned_cols=87  Identities=29%  Similarity=0.347  Sum_probs=78.1

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      +..++|.+.+....+|||++.+|.+..   .+++|..|.++|||+++|.|++||+|++|||.++.++++.+++.+++..+
T Consensus         3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~---~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   79 (90)
T 1qav_A            3 LQRRRVTVRKADAGGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG   79 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CccEEEEEEeCCCCCcCEEEEcccCCC---CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            456789999988999999999876532   58999999999999999449999999999999999999999999999999


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                      ..+.|+|.|.
T Consensus        80 ~~v~l~v~r~   89 (90)
T 1qav_A           80 KEVVLEVKYM   89 (90)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEe
Confidence            9999999874

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.44  E-value=3.7e-13  Score=116.88  Aligned_cols=90  Identities=20%  Similarity=0.336  Sum_probs=79.6

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC---CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ---DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~---~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      ..+.|.+.|.+..+|||+|.+|.+...   ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+.
T Consensus         5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   84 (98)
T 1ihj_A            5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   84 (98)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            356788888788999999999876542   24589999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEecC
Q psy2533         167 TGPIVTLEIAKQG  179 (684)
Q Consensus       167 sg~~V~LvV~R~~  179 (684)
                      .+..|.|+|.|..
T Consensus        85 ~g~~v~l~v~R~g   97 (98)
T 1ihj_A           85 ADFKIELEIQTFD   97 (98)
T ss_dssp             SCSEEEEEEEEC-
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999999864

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.44  E-value=5.9e-13  Score=116.62  Aligned_cols=90  Identities=24%  Similarity=0.396  Sum_probs=78.3

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      .+.|.+.+ ...+|||+|.||.+.+.  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus         5 ~~~v~l~k-~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   83 (102)
T 2i1n_A            5 YEEIVLER-GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAG   83 (102)
T ss_dssp             EEEEEEEC-BTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             EEEEEEEE-CCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34566655 47899999999876532  3568999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCcc
Q psy2533         169 PIVTLEIAKQGAI  181 (684)
Q Consensus       169 ~~V~LvV~R~~~~  181 (684)
                      ..|.|+|.|....
T Consensus        84 ~~v~l~v~R~~~~   96 (102)
T 2i1n_A           84 PVVRLVVRRRQPP   96 (102)
T ss_dssp             SEEEEEEEEECCC
T ss_pred             CeEEEEEEeCCCC
Confidence            9999999997643

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.44  E-value=6.8e-13  Score=114.21  Aligned_cols=88  Identities=32%  Similarity=0.476  Sum_probs=76.7

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      .++|.+.+. ..+|||+|.||.+.+.  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus         4 ~~~v~l~k~-~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (94)
T 2fe5_A            4 IMEVNLLKG-PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS   82 (94)
T ss_dssp             EEEEEEECC-TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC
T ss_pred             EEEEEEEEC-CCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456777655 6789999999876542  3458999999999999999999999999999999999999999999999888


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|..
T Consensus        83 ~~v~l~v~R~g   93 (94)
T 2fe5_A           83 DMVYLKVAKPG   93 (94)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEcCC
Confidence            89999998754

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=7.3e-13  Score=117.73  Aligned_cols=92  Identities=23%  Similarity=0.381  Sum_probs=80.6

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ....+|.+.+. ..+|||+|.+|.+......+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus         7 ~~~~~v~l~~~-~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   85 (110)
T 1um1_A            7 GYVFTVELERG-PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CCEEEEEEECC-TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CcEEEEEEEEC-CCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34566666654 47999999998776555678999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCcc
Q psy2533         169 PIVTLEIAKQGAI  181 (684)
Q Consensus       169 ~~V~LvV~R~~~~  181 (684)
                      ..|.|+|.|....
T Consensus        86 ~~v~l~v~R~~~~   98 (110)
T 1um1_A           86 KKMRFLVAKSDVE   98 (110)
T ss_dssp             SEEEEEEECCCHH
T ss_pred             CeEEEEEEeCCcc
Confidence            9999999998653

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.43  E-value=4.3e-13  Score=129.85  Aligned_cols=86  Identities=36%  Similarity=0.539  Sum_probs=74.4

Q ss_pred             eEEEEEecCCCcccEEEEe---ccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          92 KSHSVRDMLRQEAKLSEMS---EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~G---G~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ..|.+.+. ..||||+|.+   |........+|||..|.+||||+++|+|++||+|++|||.++.+++|.+++.+|+.++
T Consensus        82 ~~v~l~k~-~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g  160 (170)
T 3egg_C           82 FPVELEKD-SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK  160 (170)
T ss_dssp             EEEEEECB-TTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCC
T ss_pred             EEEEEEeC-CCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34555544 4799999999   4333334578999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                      ..|.|+|.|.
T Consensus       161 ~~v~L~V~R~  170 (170)
T 3egg_C          161 GRVRFMIGRE  170 (170)
T ss_dssp             SEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            9999999884

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.43  E-value=7.1e-13  Score=115.90  Aligned_cols=90  Identities=23%  Similarity=0.395  Sum_probs=78.5

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ..+.|.+.+.. .+|||+|.+|.+...  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..
T Consensus         7 ~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (101)
T 2jik_A            7 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   85 (101)
T ss_dssp             EEEEEEEECCT-TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC
T ss_pred             ccEEEEEEeCC-CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45677777654 899999999876542  245899999999999999999999999999999999999999999999988


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus        86 g~~v~l~v~R~~~   98 (101)
T 2jik_A           86 GYAVSLRVQHRLE   98 (101)
T ss_dssp             CSEEEEEEEEESC
T ss_pred             CCeEEEEEEeCCC
Confidence            8999999988753

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=6.1e-13  Score=120.28  Aligned_cols=90  Identities=21%  Similarity=0.220  Sum_probs=80.4

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.+..+.+|||+|.++.+..  ..++||..|.++|||+++|+|++||+|++|||.++.+++|.+++.+|+..+
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~~~~~~~--~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g   91 (117)
T 1v62_A           14 SGPLMVEIVKTPGSALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS   91 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS
T ss_pred             CCcEEEEEEcCCCCcccEEEEccCCCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            456788888888899999999875532  236999999999999999999999999999999999999999999999889


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..|.|+|.|...
T Consensus        92 ~~v~l~v~r~~~  103 (117)
T 1v62_A           92 EKVRLEILPVPQ  103 (117)
T ss_dssp             SEEEEEECCBTT
T ss_pred             CeEEEEEEECCC
Confidence            999999998764

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=5.4e-13  Score=118.19  Aligned_cols=92  Identities=16%  Similarity=0.306  Sum_probs=78.2

Q ss_pred             CCCceEEEEEecCCCcccEEEEeccCCC-----CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHH
Q psy2533          88 DSSMKSHSVRDMLRQEAKLSEMSEEGAG-----QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAE  162 (684)
Q Consensus        88 ~s~~~~V~v~k~~~~GLGfsI~GG~~~~-----~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~  162 (684)
                      ++...+|.+.|. ..+|||+|.+|.+..     ....++||..|.++|||+++|.|++||+|++|||+++.+++|.+++.
T Consensus         6 ~~~~~~v~l~k~-~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~   84 (107)
T 1uhp_A            6 SGKSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             SSEEEEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             CcEEEEEEEEeC-CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            345666777664 789999999986431     13468999999999999999449999999999999999999999999


Q ss_pred             HHHcCCCEEEEEEEecCc
Q psy2533         163 YLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       163 lLk~sg~~V~LvV~R~~~  180 (684)
                      +|+..+..|.|+|.|..+
T Consensus        85 ~~~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           85 AFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHHHCCSSEEEEEEECCS
T ss_pred             HHHcCCCcEEEEEEeCCC
Confidence            999999999999998764

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.43  E-value=6e-13  Score=115.14  Aligned_cols=86  Identities=26%  Similarity=0.431  Sum_probs=76.2

Q ss_pred             ceEEEEEec-CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          91 MKSHSVRDM-LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        91 ~~~V~v~k~-~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ...|.+.|. ++.+|||++.++.+.    .|++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+.
T Consensus         4 ~~~v~l~k~~~~~~lG~~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   79 (95)
T 2vwr_A            4 ILQVALHKRDSGEQLGIKLVRRTDE----PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGE   79 (95)
T ss_dssp             EEEEEEECSSTTCCCCEEEEECSSS----CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             EEEEEEEECCCCCcccEEEEeccCC----CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            356777775 567999999987542    489999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .|.|+|.|...
T Consensus        80 ~v~l~v~R~~~   90 (95)
T 2vwr_A           80 RVNLTIARPGK   90 (95)
T ss_dssp             EEEEEEEEESC
T ss_pred             EEEEEEEcCCc
Confidence            99999998754

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.43  E-value=5.6e-13  Score=113.36  Aligned_cols=83  Identities=22%  Similarity=0.316  Sum_probs=74.8

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhccc-CccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADAN-GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~-GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      .++|.+.+....+|||++.+|.+..   .+++|..|.++|||+++ | |++||+|++|||.++.+++|.+++.+++..+.
T Consensus         3 ~~~v~l~~~~~~~lG~~i~~~~~~~---~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   78 (87)
T 4e34_A            3 IRKVLLLKEDHEGLGISITGGKEHG---VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRG   78 (87)
T ss_dssp             CEEEEEECCTTBCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             EEEEEEEECCCCcccEEEEccCCCC---CCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            5678888888899999999986543   47999999999999995 6 99999999999999999999999999999999


Q ss_pred             EEEEEEEe
Q psy2533         170 IVTLEIAK  177 (684)
Q Consensus       170 ~V~LvV~R  177 (684)
                      .+.|+|.+
T Consensus        79 ~v~l~v~~   86 (87)
T 4e34_A           79 EIEFEVVY   86 (87)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            99998865

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.42  E-value=9.1e-13  Score=116.71  Aligned_cols=89  Identities=36%  Similarity=0.542  Sum_probs=76.8

Q ss_pred             ceEEEEEecCCCcccEEEEe---ccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMS---EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~G---G~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ...|.+.+ ...+|||+|.+   |.+......++||..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..
T Consensus        10 ~~~v~l~k-~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   88 (107)
T 1wf8_A           10 LFPVELEK-DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT   88 (107)
T ss_dssp             EEEEEEEC-BTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC
T ss_pred             EEEEEEEE-CCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            44455544 46799999999   444444567999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus        89 ~~~v~l~v~R~~~  101 (107)
T 1wf8_A           89 KGNVRFVIGREKP  101 (107)
T ss_dssp             CSEEEEEEEEECC
T ss_pred             CCeEEEEEEeCCC
Confidence            9999999998754

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.42  E-value=3.1e-13  Score=124.17  Aligned_cols=83  Identities=34%  Similarity=0.531  Sum_probs=73.3

Q ss_pred             ecCCCcccEEEEeccCCCC-CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-------CC
Q psy2533          98 DMLRQEAKLSEMSEEGAGQ-DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-------GP  169 (684)
Q Consensus        98 k~~~~GLGfsI~GG~~~~~-~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-------g~  169 (684)
                      +....+|||+|.++.+... ...++||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+.+       +.
T Consensus        33 k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~  112 (127)
T 1wg6_A           33 DSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRG  112 (127)
T ss_dssp             SSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             eCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCC
Confidence            4678899999998865321 235899999999999999999999999999999999999999999999976       78


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .|.|+|.|...
T Consensus       113 ~v~l~v~R~~~  123 (127)
T 1wg6_A          113 MIQLVILRRSG  123 (127)
T ss_dssp             EEEEEEEECSC
T ss_pred             EEEEEEEeCCC
Confidence            99999999764

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.41  E-value=1.2e-12  Score=118.14  Aligned_cols=90  Identities=18%  Similarity=0.243  Sum_probs=76.7

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      .....+.+.+....+|||+|.||.+..  ..+++|..|.++|||+++|+|++||+|++|||.++.+++|.+++.+|+..+
T Consensus        14 ~~~~~v~l~~~~~~~lG~~i~g~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   91 (119)
T 1x6d_A           14 DGIHVTILHKEEGAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR   91 (119)
T ss_dssp             TTEEEEEEECCTTSCCSEEEECCSSSS--CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred             CCeEEEEEEeCCCCccCEEEeCCCCCC--CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            446667777878999999999886542  358999999999999999999999999999999999999999999999876


Q ss_pred             CE-EEEEEEecCc
Q psy2533         169 PI-VTLEIAKQGA  180 (684)
Q Consensus       169 ~~-V~LvV~R~~~  180 (684)
                      .. +.|+|.|...
T Consensus        92 ~~~~~l~v~R~~~  104 (119)
T 1x6d_A           92 EPRQAVIVTRKLT  104 (119)
T ss_dssp             SSSEEEEEEECCC
T ss_pred             CCeEEEEEEcCCC
Confidence            55 5577777654

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.41  E-value=3.7e-13  Score=119.96  Aligned_cols=90  Identities=27%  Similarity=0.392  Sum_probs=79.4

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCC------CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAG------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      ..+.|.+.+..+.+|||+|.+|.+..      ....+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+
T Consensus         9 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   88 (111)
T 1uju_A            9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             ccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35678888888899999999986431      224589999999999999999999999999999999999999999999


Q ss_pred             HHcCCCEEEEEEEecC
Q psy2533         164 LVRTGPIVTLEIAKQG  179 (684)
Q Consensus       164 Lk~sg~~V~LvV~R~~  179 (684)
                      |+..+..|.|+|.|..
T Consensus        89 l~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           89 LRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HSSCSSEEEECCCCCC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            9999999999998865

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.41  E-value=9.3e-13  Score=119.90  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=80.2

Q ss_pred             CCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          87 LDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        87 ~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      .....++|.+.+....+|||+|.||.+..   .+++|..|.+||||+++|+|++||+|++|||.++.+++|.+++.+|+.
T Consensus        16 ~~~~~~~v~l~k~~~~~lG~~i~gg~~~~---~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~   92 (125)
T 3hpk_A           16 IPTVPGKVTLQKDAQNLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE   92 (125)
T ss_dssp             CCEEEEEEEEECCTTSCCCEEEEECSSCC---SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CcCCCeEEEEEeCCCCCcCEEEeccCCCC---CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            33456778888888899999999986533   579999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEecC
Q psy2533         167 TGPIVTLEIAKQG  179 (684)
Q Consensus       167 sg~~V~LvV~R~~  179 (684)
                      .++.|.|+|.|..
T Consensus        93 ~~~~v~l~v~r~~  105 (125)
T 3hpk_A           93 VKGEVTIHYNKLQ  105 (125)
T ss_dssp             SCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEECC
Confidence            9999999998843

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.40  E-value=1.1e-12  Score=113.19  Aligned_cols=86  Identities=23%  Similarity=0.358  Sum_probs=74.9

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.|. +.+|||++.++.    ...+++|..|.++|||+++|+|++||+|++|||.++.+++|.+++.+|+..+
T Consensus         3 ~~~r~v~l~k~-~~~lG~~i~~~~----~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   77 (93)
T 3o46_A            3 DSVKIIRLVKN-REPLGATIKKDE----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ   77 (93)
T ss_dssp             -CCEEEEEEES-SSCCCEEEEECT----TTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred             ccEEEEEEEeC-CCCccEEEEecC----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            35677888876 469999999762    1347999999999999999999999999999999999999999999999998


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      +.|.|+|.+..
T Consensus        78 ~~v~l~v~~~~   88 (93)
T 3o46_A           78 GAITFKIIPGS   88 (93)
T ss_dssp             EEEEEEEECC-
T ss_pred             CeEEEEEEeCC
Confidence            89999998754

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=9.1e-13  Score=113.39  Aligned_cols=84  Identities=17%  Similarity=0.242  Sum_probs=74.3

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .+.|.+.|.++.+|||+|.++.     ..+++|..|.++|||++++.|++||+|++|||.++.+++|.+++.+|+...+.
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~~~-----~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~   76 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKMNE-----LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGS   76 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSC-----GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEE
T ss_pred             eEEEEEEeCCCCceeEEEEeCC-----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCc
Confidence            4678899988899999998742     24799999999999999555999999999999999999999999999988778


Q ss_pred             EEEEEEecC
Q psy2533         171 VTLEIAKQG  179 (684)
Q Consensus       171 V~LvV~R~~  179 (684)
                      |.|+|.|..
T Consensus        77 v~l~v~r~~   85 (88)
T 1kwa_A           77 ITFKIVPSY   85 (88)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEECCc
Confidence            999998764

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=112.25  Aligned_cols=84  Identities=19%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      ..+.+......+|||+|.||.+..   .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++..+..+
T Consensus         3 ~~~~v~~~~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v   78 (89)
T 2q3g_A            3 DSFKVVLEGPAPWGFRLQGGKDFN---VPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERL   78 (89)
T ss_dssp             EEEEEEEESSSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEE
T ss_pred             cEEEEEEcCCCcccEEEECcCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence            445555567789999999886532   479999999999999999 9999999999999999999999999999888999


Q ss_pred             EEEEEecC
Q psy2533         172 TLEIAKQG  179 (684)
Q Consensus       172 ~LvV~R~~  179 (684)
                      .|+|.|..
T Consensus        79 ~l~v~R~~   86 (89)
T 2q3g_A           79 SLGLSRAI   86 (89)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeCC
Confidence            99998865

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=7.5e-13  Score=117.26  Aligned_cols=91  Identities=31%  Similarity=0.469  Sum_probs=80.0

Q ss_pred             CCceEEEEEecCCCcccEEEE-----eccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEM-----SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~-----GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      ....+|.+.+ ...+|||+|.     ||.+......+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+
T Consensus         8 ~~~~~v~l~k-~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   86 (108)
T 1q7x_A            8 GDIFEVELAK-NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   86 (108)
T ss_dssp             SSEEEEEEES-SSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred             CcEEEEEEEE-CCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3456666665 4689999999     887765556789999999999999999999999999999999999999999999


Q ss_pred             HHcCCCEEEEEEEecCc
Q psy2533         164 LVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       164 Lk~sg~~V~LvV~R~~~  180 (684)
                      ++..+..|.|+|.|...
T Consensus        87 ~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           87 LRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             HHHTTSEEEEEEECCCC
T ss_pred             HHcCCCeEEEEEEeCCc
Confidence            99999999999998754

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=118.16  Aligned_cols=90  Identities=23%  Similarity=0.395  Sum_probs=78.5

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ..+.|.+.+.. .+|||+|.+|.+...  ...+++|..|.++|||+++|+|++||+|++|||.++.+++|.+++.+++..
T Consensus        17 ~~~~v~l~r~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   95 (120)
T 2eno_A           17 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   95 (120)
T ss_dssp             EEEEEEEECCS-SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH
T ss_pred             ceEEEEEEECC-CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45667776655 899999999866432  245899999999999999999999999999999999999999999999988


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus        96 g~~v~l~v~R~~~  108 (120)
T 2eno_A           96 GYAVSLRVQHRLQ  108 (120)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEeCCc
Confidence            8999999999765

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.39  E-value=7.6e-13  Score=113.21  Aligned_cols=85  Identities=25%  Similarity=0.417  Sum_probs=73.3

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC--
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg--  168 (684)
                      .+++.+.+. ..+|||++.+|.+..   .+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..+  
T Consensus         3 ~~~v~l~~~-~~g~G~~~~~g~~~~---~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   78 (90)
T 2q9v_A            3 EQDIFLWRK-ETGFGFRILGGNEPG---EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQ   78 (90)
T ss_dssp             EEEEEEECB-TTBCCEEEEECSSTT---SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEC-CCccCEEEEccccCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            456666655 478999999886543   46999999999999999999999999999999999999999999999874  


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|..
T Consensus        79 ~~v~l~v~R~~   89 (90)
T 2q9v_A           79 GHVNLTVRQTR   89 (90)
T ss_dssp             TEEEEEEEECC
T ss_pred             CeEEEEEEecc
Confidence            48999998863

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.39  E-value=1.4e-12  Score=111.09  Aligned_cols=83  Identities=18%  Similarity=0.244  Sum_probs=72.9

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEE
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT  172 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~  172 (684)
                      ++.+..+...+|||++.+|.+..   .+++|..|.++|||+++| |++||+|++|||.++.+++|.+++.+++..+..|.
T Consensus         4 ~~~v~l~~~~~~G~~l~~g~~~~---~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   79 (88)
T 2uzc_A            4 NYSVSLVGPAPWGFRLQGGKDFN---MPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLN   79 (88)
T ss_dssp             EEEEEEESSSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             EEEEEEcCCCcccEEEECcCCCC---CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            34444466789999999987643   479999999999999999 99999999999999999999999999998889999


Q ss_pred             EEEEecC
Q psy2533         173 LEIAKQG  179 (684)
Q Consensus       173 LvV~R~~  179 (684)
                      |+|.|..
T Consensus        80 l~v~R~g   86 (88)
T 2uzc_A           80 MTLQRES   86 (88)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9998865

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.39  E-value=1.5e-12  Score=110.92  Aligned_cols=83  Identities=16%  Similarity=0.223  Sum_probs=75.1

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEE
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT  172 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~  172 (684)
                      ++++.++...+|||++.+|.+.   ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..+..|.
T Consensus         3 ~~~v~~~~~~~lG~~l~~~~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   78 (87)
T 2pa1_A            3 ALTVDVAGPAPWGFRITGGRDF---HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLR   78 (87)
T ss_dssp             EEEEEECSSSCCSEEEEEEGGG---TEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEE
T ss_pred             EEEEEECCCCccCEEEecccCC---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            5677777889999999988654   2589999999999999999 99999999999999999999999999998888899


Q ss_pred             EEEEecC
Q psy2533         173 LEIAKQG  179 (684)
Q Consensus       173 LvV~R~~  179 (684)
                      |+|.|..
T Consensus        79 l~v~R~~   85 (87)
T 2pa1_A           79 LQLDRIT   85 (87)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999875

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.39  E-value=1.4e-12  Score=119.22  Aligned_cols=91  Identities=26%  Similarity=0.436  Sum_probs=79.8

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ....|.+.+....+|||+|.++.+...  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..
T Consensus        15 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   94 (129)
T 2dmz_A           15 ETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA   94 (129)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHC
T ss_pred             cEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            445566667788999999999866543  346899999999999999999999999999999999999999999999998


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus        95 ~~~v~l~v~R~~~  107 (129)
T 2dmz_A           95 GQVVHLTLVRRKT  107 (129)
T ss_dssp             CSSEEEEEEEESS
T ss_pred             CCeEEEEEEeCCc
Confidence            8899999999764

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.39  E-value=1.1e-12  Score=116.51  Aligned_cols=86  Identities=17%  Similarity=0.237  Sum_probs=74.2

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc----
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR----  166 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~----  166 (684)
                      .+.|.+ ++...+|||+|.||.+..  .+.+||..|.+++||+++|+|++||+|++|||+++.+++|.+|+.+|+.    
T Consensus         7 ~~~v~l-~k~~~glG~~i~gg~~~~--~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   83 (103)
T 1ufx_A            7 GTLVRV-KKSAATLGIAIEGGANTR--QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKT   83 (103)
T ss_dssp             SEEEEE-ECCSSSCCEEEECBTTSS--CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHC
T ss_pred             eEEEEE-EcCCCcCCeEEECCCCCC--CCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhccc
Confidence            455666 567789999999987654  2345999999999999999999999999999999999999999999997    


Q ss_pred             -CCCEEEEEEEecC
Q psy2533         167 -TGPIVTLEIAKQG  179 (684)
Q Consensus       167 -sg~~V~LvV~R~~  179 (684)
                       .+..+.|+|.|..
T Consensus        84 ~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           84 KDRDYIDFLVTEFN   97 (103)
T ss_dssp             SSCSEEEEEECCCC
T ss_pred             CCCCeEEEEEEEcc
Confidence             4778999998865

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.39  E-value=1.1e-12  Score=115.74  Aligned_cols=87  Identities=22%  Similarity=0.448  Sum_probs=75.1

Q ss_pred             eEEEEEecCCCcccEEEEeccCCC---CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAG---QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~---~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      .+|.+ .+...+|||+|.+|.+..   ....+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..+
T Consensus         9 ~~v~l-~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   87 (105)
T 1wha_A            9 HVACL-ARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS   87 (105)
T ss_dssp             EEEEE-CCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCC
T ss_pred             EEEEE-EeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34444 445678999999987632   23468999999999999999999999999999999999999999999999888


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|..
T Consensus        88 ~~v~l~v~R~~   98 (105)
T 1wha_A           88 PTIALLLEREA   98 (105)
T ss_dssp             SCEEEEEEECC
T ss_pred             CeEEEEEEECC
Confidence            89999999875

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.38  E-value=2.9e-12  Score=114.85  Aligned_cols=91  Identities=21%  Similarity=0.302  Sum_probs=79.1

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCC-c---ccEEEEEecCCChhcc-cCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQD-R---LGIYIKSVVKGGAADA-NGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~-~---~gIfIs~V~pGGpA~r-~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      ...+.|.+.+....+|||+|.++.+.... .   .+++|..|.++|||++ +| |++||+|++|||.++.+++|.+++.+
T Consensus         9 ~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~   87 (114)
T 1uew_A            9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKL   87 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHH
T ss_pred             ccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45678888888889999999988654321 1   2689999999999999 77 99999999999999999999999999


Q ss_pred             HHcCCCEEEEEEEecCc
Q psy2533         164 LVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       164 Lk~sg~~V~LvV~R~~~  180 (684)
                      |+..+..|.|+|.|...
T Consensus        88 l~~~g~~v~l~v~r~~~  104 (114)
T 1uew_A           88 IKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HHHTTTEEEEEECCCSC
T ss_pred             HHcCCCeEEEEEEeCCc
Confidence            99989999999988764

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.38  E-value=8.8e-13  Score=117.74  Aligned_cols=88  Identities=35%  Similarity=0.509  Sum_probs=75.6

Q ss_pred             EEEEEecCCCcccEEEEe---ccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          93 SHSVRDMLRQEAKLSEMS---EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~G---G~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      .|.+. +...+|||+|.+   |.+......|++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+.
T Consensus         7 ~v~l~-k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   85 (113)
T 2g5m_B            7 PVELE-KDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKG   85 (113)
T ss_dssp             EEECC-CCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCS
T ss_pred             EEEEE-eCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            34443 356899999998   44433345699999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCcc
Q psy2533         170 IVTLEIAKQGAI  181 (684)
Q Consensus       170 ~V~LvV~R~~~~  181 (684)
                      .|.|+|.|....
T Consensus        86 ~v~l~v~R~~~~   97 (113)
T 2g5m_B           86 RVRFMIGRERPG   97 (113)
T ss_dssp             SCEEEEEECCCC
T ss_pred             eEEEEEEeCCCC
Confidence            999999998754

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.38  E-value=1.3e-12  Score=117.63  Aligned_cols=89  Identities=18%  Similarity=0.294  Sum_probs=77.4

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC---CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ---DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~---~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      ....|.+.+..+.+|||+|.||.+...   +..+++|..|.++|||+ .| |++||+|++|||.++.+++|.+++.+|+.
T Consensus        14 ~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~   91 (117)
T 2csj_A           14 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRK   91 (117)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHhc
Confidence            456677777777999999999876543   35689999999999996 55 99999999999999999999999999999


Q ss_pred             CCCEEEEEEEecCc
Q psy2533         167 TGPIVTLEIAKQGA  180 (684)
Q Consensus       167 sg~~V~LvV~R~~~  180 (684)
                      .+..|.|+|.|...
T Consensus        92 ~~~~v~l~v~R~~~  105 (117)
T 2csj_A           92 SGKIAAIVVKRPRK  105 (117)
T ss_dssp             SCSEEEEEEEEEEE
T ss_pred             CCCeEEEEEEECCc
Confidence            99999999999754

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.38  E-value=9.4e-13  Score=116.28  Aligned_cols=87  Identities=14%  Similarity=0.210  Sum_probs=76.7

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccC-ccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANG-RLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~G-rLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ...+.+.+.+....+|||.+.||.+..   .+++|..|.++|||+++| +|++||+|++|||.++.+++|.+++.+|+..
T Consensus        16 ~~~~~v~l~~~~~~~~G~~~~gg~~~~---~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~   92 (107)
T 3nfk_A           16 DNLVLIRMKPDENGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   92 (107)
T ss_dssp             CCCEEEEECCCTTSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCG
T ss_pred             CCEEEEEEEcCCCCCCCEEEEccCCCC---CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            457778887777789999999986532   479999999999999999 6999999999999999999999999999988


Q ss_pred             CC----EEEEEEEec
Q psy2533         168 GP----IVTLEIAKQ  178 (684)
Q Consensus       168 g~----~V~LvV~R~  178 (684)
                      +.    .|.|+|.|.
T Consensus        93 ~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           93 CERHSGELMLLVRPN  107 (107)
T ss_dssp             GGSBTTBEEEEEECC
T ss_pred             cccCCcEEEEEEEcC
Confidence            65    899999763

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.38  E-value=1.3e-12  Score=117.87  Aligned_cols=89  Identities=13%  Similarity=0.210  Sum_probs=77.3

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhccc-CccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADAN-GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~-GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ...++|.+.+...++|||+|.+|.+..   .+++|..|.++|||+++ |.|++||+|++|||.++.+++|.+++.+++..
T Consensus        14 ~~~~~v~l~k~~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~   90 (119)
T 2cs5_A           14 DNLVLIRMKPDENGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   90 (119)
T ss_dssp             SCCEEEEECCCSSSCCSEEEEEEGGGT---EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             CCeEEEEEEeCCCCCcCEEEecccCCC---CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            456778888877888999999986542   47999999999999999 34999999999999999999999999999987


Q ss_pred             C----CEEEEEEEecCc
Q psy2533         168 G----PIVTLEIAKQGA  180 (684)
Q Consensus       168 g----~~V~LvV~R~~~  180 (684)
                      +    ..|.|+|.|...
T Consensus        91 ~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           91 CERHSGELMLLVRPNAV  107 (119)
T ss_dssp             HHCCSSCEEEEEECCCC
T ss_pred             cccCCCEEEEEEEcccc
Confidence            4    489999988753

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.38  E-value=3.7e-12  Score=126.03  Aligned_cols=164  Identities=12%  Similarity=0.066  Sum_probs=103.1

Q ss_pred             cccEEEEeccCCCCCcccEEEEEecCCChhcccCccccC-CeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         103 EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAG-DQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       103 GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvG-DrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      |+|++...+.+   ...|++|..|.++|||+++| |++| |+|++|||..+.+..+....-+....+..|.|+|.|....
T Consensus         3 g~~~~~~~~~~---~~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   78 (209)
T 3rle_A            3 GSSQSVEIPGG---GTEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTL   78 (209)
T ss_dssp             -----CCCTTS---SSEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTC
T ss_pred             chhhhhhccCC---CCCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCc
Confidence            44555543332   23589999999999999999 9999 9999999999998876544333334578899999986532


Q ss_pred             ccccccccCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCC
Q psy2533         182 YHGLATLLSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQAS  261 (684)
Q Consensus       182 ~~~~stl~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~s  261 (684)
                      .....++  .|  ...                        ......+|+.            +..+....          
T Consensus        79 ~~~~v~l--~p--~~~------------------------~~~~~~lGi~------------~~~~~~~~----------  108 (209)
T 3rle_A           79 ELRETSV--TP--SNL------------------------WGGQGLLGVS------------IRFCSFDG----------  108 (209)
T ss_dssp             CEEEEEE--CC--CSS------------------------SSSSSSSCEE------------EEEEECTT----------
T ss_pred             eEEEEEE--cc--ccc------------------------ccccCccceE------------EeecChhH----------
Confidence            2111111  00  000                        0001112222            22111000          


Q ss_pred             CCCCCCCCCCCCCcEEEecc--hhhhhcCCCCC-CCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCCc
Q psy2533         262 PYPAPAPAPADPERFYQNLS--VYRNQNGRLQA-GDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGA  332 (684)
Q Consensus       262 l~~gs~~~~~d~GIFV~sI~--GaAardGrLr~-GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~~  332 (684)
                              ....|++|..|.  ++|++.| |++ ||+|++|||. +.+.  .+...+|+.. +..|.|.|.|.+.
T Consensus       109 --------~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~~  171 (209)
T 3rle_A          109 --------ANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTDT  171 (209)
T ss_dssp             --------GGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETTT
T ss_pred             --------ccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECCc
Confidence                    012578999987  6777776 999 9999999997 6554  4566666664 7789999999754

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.38  E-value=2.8e-12  Score=112.28  Aligned_cols=88  Identities=27%  Similarity=0.379  Sum_probs=77.2

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.+. ..+|||++.++.+.    .+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus        10 ~~~~~v~l~k~-~~glG~~~~~~~~~----~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   84 (104)
T 3i4w_A           10 REPRRIVIHRG-STGLGFNIVGGEXG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   84 (104)
T ss_dssp             SSCEEEEEECB-TTBTSEEEEECC-C----CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CccEEEEEEeC-CCccCEEEECCCCC----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45667777765 67899999987542    48999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCcc
Q psy2533         169 PIVTLEIAKQGAI  181 (684)
Q Consensus       169 ~~V~LvV~R~~~~  181 (684)
                      ..+.|+|.|....
T Consensus        85 ~~v~l~v~r~~~~   97 (104)
T 3i4w_A           85 QTVTIIAQYKPEE   97 (104)
T ss_dssp             SEEEEEEEECHHH
T ss_pred             CeEEEEEEECcch
Confidence            9999999987543

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.37  E-value=3.8e-12  Score=111.89  Aligned_cols=91  Identities=21%  Similarity=0.293  Sum_probs=76.8

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--  166 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--  166 (684)
                      ...+.|.+.+..+.+|||+|.+... .....+++|..|.++|||+++|.|++||+|++|||.++.++++.+++.+|+.  
T Consensus         8 ~~~~~v~l~k~~g~~lG~~i~~~~~-~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   86 (101)
T 2yt7_A            8 DNCREVHLEKRRGEGLGVALVESGW-GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETK   86 (101)
T ss_dssp             CCCEEEEEECCTTCCCCEEEEECCC-SSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTT
T ss_pred             CceEEEEEEeCCCCccCEEEEeCCC-CCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3567788888787899999985322 1223479999999999999977799999999999999999999999999998  


Q ss_pred             CCCEEEEEEEecCc
Q psy2533         167 TGPIVTLEIAKQGA  180 (684)
Q Consensus       167 sg~~V~LvV~R~~~  180 (684)
                      .+..|.|+|.|.++
T Consensus        87 ~g~~v~l~v~R~~p  100 (101)
T 2yt7_A           87 SQTSVTLSIVHCPP  100 (101)
T ss_dssp             TSSEEEEEECCCCC
T ss_pred             CCCeEEEEEEeCCC
Confidence            68899999988754

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.9e-12  Score=111.22  Aligned_cols=87  Identities=32%  Similarity=0.408  Sum_probs=75.9

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...++|.+.+ ...+|||+|.+|.+..   .+++|..|.++|||+++|.|++||+|++|||.++.++++.+++.+++..+
T Consensus         4 ~~~r~v~l~k-~~~glG~~l~~~~~~~---~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   79 (93)
T 2dkr_A            4 GSSGVVELPK-TDEGLGFNIMGGKEQN---SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ   79 (93)
T ss_dssp             SCSCEEEEEC-CTTCCCEEEECSSSSS---CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             CCCEEEEEEe-CCCCccEEEecccCCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4567788876 4689999999875532   47999999999999999669999999999999999999999999999888


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|.+
T Consensus        80 ~~v~l~v~r~~   90 (93)
T 2dkr_A           80 GSVKLVVRSGP   90 (93)
T ss_dssp             SEEEEEECCCC
T ss_pred             CcEEEEEEeCC
Confidence            89999998764

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.37  E-value=2.6e-12  Score=111.38  Aligned_cols=87  Identities=26%  Similarity=0.338  Sum_probs=75.0

Q ss_pred             EEEEEecCCCcccEEEEeccCCC-CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAG-QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~-~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      +|.+. +...+|||+|.+|.+.. ....+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..+..+
T Consensus         6 ~v~l~-k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   84 (97)
T 2jil_A            6 EVTLH-KEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEA   84 (97)
T ss_dssp             EEEEE-CBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEE
T ss_pred             EEEEE-eCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            44454 45689999999986543 22458999999999999999999999999999999999999999999999988999


Q ss_pred             EEEEEecCc
Q psy2533         172 TLEIAKQGA  180 (684)
Q Consensus       172 ~LvV~R~~~  180 (684)
                      .|+|.|...
T Consensus        85 ~l~v~R~~~   93 (97)
T 2jil_A           85 ALLIEYDVS   93 (97)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEeCCC
Confidence            999999764

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.37  E-value=2.8e-12  Score=111.43  Aligned_cols=88  Identities=17%  Similarity=0.245  Sum_probs=74.9

Q ss_pred             CceEEEEEecCCCcccEEEEe-ccCC---CCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMS-EEGA---GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV  165 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~G-G~~~---~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk  165 (684)
                      ..++|.+.|.+..+|||+|.+ |...   .....+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+
T Consensus         4 ~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~   82 (96)
T 2ego_A            4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIK   82 (96)
T ss_dssp             CEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            457888988888899999997 2111   1113589999999999999999 9999999999999999999999999999


Q ss_pred             cCCCEEEEEEEec
Q psy2533         166 RTGPIVTLEIAKQ  178 (684)
Q Consensus       166 ~sg~~V~LvV~R~  178 (684)
                      ..++.|.|+|.+.
T Consensus        83 ~~~~~v~l~v~~~   95 (96)
T 2ego_A           83 ASGNVLRLETLYG   95 (96)
T ss_dssp             HTTTEEEEEEECC
T ss_pred             hCCCeEEEEEEEC
Confidence            9888999998763

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.36  E-value=4.5e-12  Score=116.42  Aligned_cols=90  Identities=19%  Similarity=0.338  Sum_probs=77.0

Q ss_pred             CCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          88 DSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        88 ~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ......|.+.+ ...+|||+|.||.+.   ..+++|..|.++|||+++|+|++||+|++|||.++.+++|.+++.+|+..
T Consensus        16 ~g~~~~v~l~~-~~~g~G~~i~g~~~~---~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~   91 (129)
T 2kpk_A           16 KGKFIHTKLRK-SSRGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI   91 (129)
T ss_dssp             CSEEEEEEEEE-CSSCCSEEEEEEEET---TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred             CCcEEEEEEEE-CCCcccEEEeCccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34455566665 567999999987542   35799999999999999999999999999999999999999999999987


Q ss_pred             --CCEEEEEEEecCcc
Q psy2533         168 --GPIVTLEIAKQGAI  181 (684)
Q Consensus       168 --g~~V~LvV~R~~~~  181 (684)
                        +..|.|+|.|....
T Consensus        92 ~~g~~v~l~v~R~~~~  107 (129)
T 2kpk_A           92 PIGASVDLELCRGYPL  107 (129)
T ss_dssp             CTTEEEEEEEEECSCC
T ss_pred             CCCCeEEEEEEeCCCC
Confidence              67899999998653

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.36  E-value=2.5e-12  Score=117.08  Aligned_cols=90  Identities=21%  Similarity=0.377  Sum_probs=78.4

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      .....|.+.+. ..+|||+|.++.+..  ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus        24 ~~~~~v~l~k~-~~glG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~  100 (124)
T 2daz_A           24 GELHIIELEKD-KNGLGLSLAGNKDRS--RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP  100 (124)
T ss_dssp             SEEEEEEEECC-SSCCCEEEECBSSTT--SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred             CceEEEEEEeC-CCccCEEEeccCCCC--cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34556666654 679999999886543  358999999999999999999999999999999999999999999999998


Q ss_pred             CEEEEEEEecCcc
Q psy2533         169 PIVTLEIAKQGAI  181 (684)
Q Consensus       169 ~~V~LvV~R~~~~  181 (684)
                      ..|.|+|.|....
T Consensus       101 ~~v~l~v~R~~~~  113 (124)
T 2daz_A          101 SKVKLVFIRNEDA  113 (124)
T ss_dssp             SEEEEEEEECTTH
T ss_pred             CeEEEEEEeCCCc
Confidence            9999999998654

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.36  E-value=3.8e-12  Score=109.06  Aligned_cols=85  Identities=18%  Similarity=0.253  Sum_probs=74.4

Q ss_pred             CCceEEEEEecCC-CcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDMLR-QEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~~~-~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      .....|.+.+... .+|||+|.++.+.    .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++..
T Consensus         5 ~~~~~v~l~k~~~~~~~G~~~~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   79 (91)
T 1m5z_A            5 VELHKVTLYKDSGMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAES   79 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             cceEEEEEEECCCCCCccEEEEeccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3456677777655 6899999987542    489999999999999999 999999999999999999999999999988


Q ss_pred             CCEEEEEEEec
Q psy2533         168 GPIVTLEIAKQ  178 (684)
Q Consensus       168 g~~V~LvV~R~  178 (684)
                      +..|.|+|.|.
T Consensus        80 g~~v~l~v~R~   90 (91)
T 1m5z_A           80 GNKLDLVISRN   90 (91)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEeC
Confidence            99999999875

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.36  E-value=6.5e-12  Score=114.32  Aligned_cols=89  Identities=16%  Similarity=0.316  Sum_probs=76.0

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--  166 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--  166 (684)
                      ....+|.+.+ ...+|||+|.+|.+.   ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+.  
T Consensus        18 ~~~~~v~l~~-~~~glG~~~~~g~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   93 (123)
T 1ueq_A           18 GTFLSTTLKK-SNMGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             SEEEEEEEEC-CTTSCSEEEECCSSS---SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CcEEEEEEEe-CCCceeEEEecccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3444555554 577999999987553   3479999999999999999999999999999999999999999999998  


Q ss_pred             CCCEEEEEEEecCcc
Q psy2533         167 TGPIVTLEIAKQGAI  181 (684)
Q Consensus       167 sg~~V~LvV~R~~~~  181 (684)
                      .+..|.|+|.|....
T Consensus        94 ~g~~v~l~v~R~~~~  108 (123)
T 1ueq_A           94 IGQSVNLVLCRGYPL  108 (123)
T ss_dssp             TTCEEEEEEEESCCC
T ss_pred             CCCeEEEEEEeCCCC
Confidence            468999999998754

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.36  E-value=4.6e-12  Score=108.53  Aligned_cols=83  Identities=24%  Similarity=0.334  Sum_probs=71.8

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .++|.+.+.. .||||++.++.+.    .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..++.
T Consensus         4 ~r~v~l~r~~-~g~G~~~~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   77 (91)
T 1g9o_A            4 PRLCCLEKGP-NGYGFHLHGEKGK----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNA   77 (91)
T ss_dssp             CEEEEEECBT-TBCCEEEEECTTC----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             cEEEEEEeCC-CcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            5677777654 5899999987542    489999999999999999 999999999999999999999999999998787


Q ss_pred             EEEEEEecC
Q psy2533         171 VTLEIAKQG  179 (684)
Q Consensus       171 V~LvV~R~~  179 (684)
                      +.+++.++.
T Consensus        78 ~~~~~~~r~   86 (91)
T 1g9o_A           78 VRLLVVDPE   86 (91)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            777776653

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.36  E-value=1.6e-12  Score=134.18  Aligned_cols=95  Identities=28%  Similarity=0.353  Sum_probs=83.9

Q ss_pred             CCCCCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          84 PNRLDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        84 ~~~~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      +..+.+..+.|.|.|..+.||||+|.||.+..   .|+||..|.+||||++++.|++||+|++|||+++.+++|.+++.+
T Consensus        71 p~~~~~~~r~V~L~k~~~~glGf~I~gg~d~~---~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~  147 (263)
T 1z87_A           71 PEALLLQRRRVTVRKADAGGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA  147 (263)
T ss_dssp             CCTTSCSSEEECCCTTTTCCCCCEEEEETTTT---EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHH
T ss_pred             CCcCCCccEEEEEEeCCCCCEeEEEeeccCCC---CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHH
Confidence            34556678899998888899999999987643   589999999999999964499999999999999999999999999


Q ss_pred             HHcCCCEEEEEEEecCcc
Q psy2533         164 LVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       164 Lk~sg~~V~LvV~R~~~~  181 (684)
                      |+..+..|.|+|.|....
T Consensus       148 l~~~g~~V~L~V~R~~~~  165 (263)
T 1z87_A          148 LKKTGKEVVLEVKYMKEV  165 (263)
T ss_dssp             HHHCCSCCCEEEECCSSS
T ss_pred             HhcCCCeEEEEEEeCccc
Confidence            999999999999997654

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.35  E-value=4.9e-12  Score=109.35  Aligned_cols=83  Identities=28%  Similarity=0.341  Sum_probs=70.8

Q ss_pred             EEEecCCCcccEEEEeccCC---CC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          95 SVRDMLRQEAKLSEMSEEGA---GQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        95 ~v~k~~~~GLGfsI~GG~~~---~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ++....+.+|||+|.||.+.   +.  ...+++|..|.++|||++ | |++||+|++|||.++.++++.+++.+++..+.
T Consensus         6 ~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   83 (95)
T 1mfg_A            6 RVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQN   83 (95)
T ss_dssp             EEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCCS
T ss_pred             EEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCCC
Confidence            33334455999999998642   11  345899999999999999 7 99999999999999999999999999999899


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .|.|+|.|..
T Consensus        84 ~v~l~v~R~~   93 (95)
T 1mfg_A           84 TVELIIVREV   93 (95)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEeCC
Confidence            9999999864

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.35  E-value=4.4e-12  Score=108.65  Aligned_cols=84  Identities=25%  Similarity=0.350  Sum_probs=74.3

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..++|.+.+.. .+|||++.++.+    ..+++|..|.++|||+++| |++||+|++|||.++.+++|.+++.+|+..+.
T Consensus         4 ~~r~v~l~k~~-~g~G~~~~~~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   77 (90)
T 2he4_A            4 RPRLCHLRKGP-QGYGFNLHSDKS----RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKARED   77 (90)
T ss_dssp             CCEEEEEECBT-TBCCEEEEECSS----SSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSSS
T ss_pred             CcEEEEEEECC-CCccEEEEccCC----CCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            45677777654 699999998754    2479999999999999999 99999999999999999999999999999889


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .|.|+|.|..
T Consensus        78 ~v~l~v~r~~   87 (90)
T 2he4_A           78 EARLLVVGPS   87 (90)
T ss_dssp             EEEEEEECCC
T ss_pred             cEEEEEEccC
Confidence            9999998865

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=1.2e-12  Score=115.28  Aligned_cols=86  Identities=23%  Similarity=0.358  Sum_probs=74.7

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--C
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--G  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g  168 (684)
                      ...+.+.+ ...+|||+|.+|.+.   ..+++|..|.++|||+++|+|++||+|++|||.++.+++|.+++.+|+..  +
T Consensus        10 ~~~v~l~~-~~~g~G~~i~~g~~~---~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g   85 (103)
T 1uep_A           10 ELDVHLRR-MESGFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARN   85 (103)
T ss_dssp             EECCEEES-SSSSCCEEECCCCST---TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEe-CCCccCEEEeeecCC---CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            34455555 678899999987653   24799999999999999999999999999999999999999999999987  7


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..|.|+|.|...
T Consensus        86 ~~v~l~v~R~~~   97 (103)
T 1uep_A           86 GQVNLTVRRKVL   97 (103)
T ss_dssp             TEEEEEEEEECC
T ss_pred             CcEEEEEEeCCC
Confidence            899999998753

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.34  E-value=5.9e-12  Score=111.31  Aligned_cols=91  Identities=26%  Similarity=0.404  Sum_probs=77.9

Q ss_pred             CceEEEEE-ecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          90 SMKSHSVR-DMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        90 ~~~~V~v~-k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      ....+.+. +....+|||+|.++.+...  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+.
T Consensus        12 ~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   91 (108)
T 2jre_A           12 SLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN   91 (108)
T ss_dssp             EEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            34455555 4678899999998865432  34589999999999999999999999999999999999999999999998


Q ss_pred             CCCEEEEEEEecCc
Q psy2533         167 TGPIVTLEIAKQGA  180 (684)
Q Consensus       167 sg~~V~LvV~R~~~  180 (684)
                      .+..|.|+|.|...
T Consensus        92 ~g~~v~l~v~R~~~  105 (108)
T 2jre_A           92 AGNPVRLLLIRRLP  105 (108)
T ss_dssp             HCSEEEEEEEECCC
T ss_pred             CCCeEEEEEEeCCc
Confidence            88999999998764

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.34  E-value=6e-12  Score=109.23  Aligned_cols=87  Identities=31%  Similarity=0.330  Sum_probs=75.8

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      ..+|.+.+ ...+|||+|.++.+..  ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+..
T Consensus         5 ~~~v~l~~-~~~~lG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   81 (98)
T 2opg_A            5 ETTIEISK-GRTGLGLSIVGGSDTL--LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR   81 (98)
T ss_dssp             EEEEEEEC-BTTBTCEEEEECTTST--TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             EEEEEEEE-CCCcccEEEecCCCCC--CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            45566655 4678999999876543  24799999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEEecCc
Q psy2533         171 VTLEIAKQGA  180 (684)
Q Consensus       171 V~LvV~R~~~  180 (684)
                      |.|+|.|...
T Consensus        82 v~l~v~R~~~   91 (98)
T 2opg_A           82 VRLTLYRDEA   91 (98)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEcCCC
Confidence            9999998764

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.34  E-value=1.1e-11  Score=135.45  Aligned_cols=157  Identities=17%  Similarity=0.209  Sum_probs=106.6

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAIYHGLATLLSQPSPVM  196 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~~~~~~stl~s~psP~~  196 (684)
                      .|++|..|.++|||+++| |++||+|++|||..+.+..  +...++.  ..+..|.|+|.|.........++...+....
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~  339 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFA--ELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSA  339 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCcccc
Confidence            579999999999999999 9999999999999998764  4444444  4578999999998754332222211110000


Q ss_pred             ccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcE
Q psy2533         197 TRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERF  276 (684)
Q Consensus       197 ~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIF  276 (684)
                      .                         .....+|+...         ...+.             .      ..+...|++
T Consensus       340 ~-------------------------~~~~~~gl~~~---------~~~~~-------------~------~~~~~~gv~  366 (436)
T 4a8c_A          340 S-------------------------AEMITPALEGA---------TLSDG-------------Q------LKDGGKGIK  366 (436)
T ss_pred             c-------------------------ccccccCceee---------ecccc-------------c------ccCCCCCEE
Confidence            0                         00000111110         00000             0      001235889


Q ss_pred             EEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         277 YQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       277 V~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      |..|.  ++|++.| |++||+|++|||+.+.+  .++...+|+..+..|.|.|.|.+..+
T Consensus       367 V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~~~  423 (436)
T 4a8c_A          367 IDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNESI  423 (436)
T ss_pred             EEEeCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCeEEEEEEECCEEE
Confidence            99987  6777776 99999999999999975  57889999988889999999987654

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.34  E-value=5.4e-12  Score=111.36  Aligned_cols=87  Identities=22%  Similarity=0.307  Sum_probs=77.1

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...++|.+.+....+|||+|.++.+..   .+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+|+. +
T Consensus        14 ~~~~~v~l~k~~~~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~   88 (104)
T 1wi2_A           14 FLPRIVTLKKPPGAQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-A   88 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSC---CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-S
T ss_pred             CCCEEEEEEeCCCCCccEEEEcccCCC---CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-C
Confidence            445788888888899999999875532   479999999999999999 99999999999999999999999999998 7


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..+.|+|.|...
T Consensus        89 ~~v~l~v~r~~~  100 (104)
T 1wi2_A           89 REISMRVRFFSG  100 (104)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CEEEEEEEECCC
Confidence            889999988653

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.34  E-value=6.7e-12  Score=111.49  Aligned_cols=90  Identities=19%  Similarity=0.250  Sum_probs=78.0

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC---------CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHH
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ---------DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKA  160 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~---------~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eA  160 (684)
                      ..+.+.+.+....+|||+|.++.+...         ...+++|..|.++|||+++| |++||+|++|||.++.+++|.++
T Consensus         7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~   85 (109)
T 1q3o_A            7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQV   85 (109)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHH
Confidence            356788888888999999999865321         12379999999999999999 99999999999999999999999


Q ss_pred             HHHHHcCCCEEEEEEEecCc
Q psy2533         161 AEYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       161 V~lLk~sg~~V~LvV~R~~~  180 (684)
                      +.+|+..+..|.|+|.|..+
T Consensus        86 ~~~l~~~~~~v~l~v~~~~~  105 (109)
T 1q3o_A           86 VNMIRQGGNTLMVKVVMVTR  105 (109)
T ss_dssp             HHHHHHTTTEEEEEEEEEEC
T ss_pred             HHHHHhCCCEEEEEEEECCC
Confidence            99999888899999988643

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.34  E-value=5.1e-12  Score=110.11  Aligned_cols=86  Identities=19%  Similarity=0.298  Sum_probs=75.8

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ....++.+.+....+|||++.+.      ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus         7 ~~~~~v~l~~~~~~glG~~~~~~------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~   80 (96)
T 2qkv_A            7 LEKFNVDLMKKAGKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN   80 (96)
T ss_dssp             CCCEEEEEECBTTBCCCEEEEEC------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             CceEEEEEEeCCCCCccEEEEeC------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            34556777777888999999862      247999999999999999999999999999999999999999999999998


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      +.|.|+|.|..+
T Consensus        81 ~~v~l~v~R~~p   92 (96)
T 2qkv_A           81 GKVSMEVTRPKP   92 (96)
T ss_dssp             SEEEEEEECCCC
T ss_pred             CcEEEEEEeCCc
Confidence            999999998654

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.33  E-value=2.2e-12  Score=118.39  Aligned_cols=93  Identities=16%  Similarity=0.300  Sum_probs=79.6

Q ss_pred             CCCCceEEEEEecC-CCcccEEEEeccCCCC------CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHH
Q psy2533          87 LDSSMKSHSVRDML-RQEAKLSEMSEEGAGQ------DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEK  159 (684)
Q Consensus        87 ~~s~~~~V~v~k~~-~~GLGfsI~GG~~~~~------~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~e  159 (684)
                      .....+.|.+.+.+ +.+|||+|.++.+...      ...+++|..|.++|||+++|+|++||+|++|||.++.+++|.+
T Consensus        26 ~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~  105 (128)
T 1nf3_C           26 LPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQ  105 (128)
T ss_dssp             SCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHH
T ss_pred             CCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            34567788888775 6899999998754210      1247999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCEEEEEEEecC
Q psy2533         160 AAEYLVRTGPIVTLEIAKQG  179 (684)
Q Consensus       160 AV~lLk~sg~~V~LvV~R~~  179 (684)
                      ++.+|+..+..|.|+|.|..
T Consensus       106 ~~~~l~~~~~~v~l~v~r~~  125 (128)
T 1nf3_C          106 VTDMMIANSRNLIITVRPAN  125 (128)
T ss_dssp             HHHHHHHTTTSEEEEEECCC
T ss_pred             HHHHHHcCCCeEEEEEEECC
Confidence            99999998889999998865

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.33  E-value=8.5e-12  Score=110.11  Aligned_cols=90  Identities=19%  Similarity=0.261  Sum_probs=78.4

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCC---CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQ---DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV  165 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~---~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk  165 (684)
                      ....+|.+.|.++.+|||+|.+|.+.+.   ...+++|..|.++|||+ .| |++||+|++|||.++.++++.+++..++
T Consensus         6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (107)
T 2h2b_A            6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLR   83 (107)
T ss_dssp             EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhh
Confidence            4467788888888999999999876432   34589999999999999 77 9999999999999999999999999998


Q ss_pred             cCCCEEEEEEEecCc
Q psy2533         166 RTGPIVTLEIAKQGA  180 (684)
Q Consensus       166 ~sg~~V~LvV~R~~~  180 (684)
                      ..+..|.|+|.|...
T Consensus        84 ~~g~~v~l~v~R~~~   98 (107)
T 2h2b_A           84 KSGKNAKITIRRKKG   98 (107)
T ss_dssp             TCCSEEEEEEEEESC
T ss_pred             CCCCEEEEEEEECCC
Confidence            889999999998764

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.33  E-value=8.3e-12  Score=112.02  Aligned_cols=86  Identities=21%  Similarity=0.324  Sum_probs=76.6

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...++|.+.+....+|||.+.++      ..+++|..|.++|||+++|.|++||+|++|||.++.++++.+++.+|+..+
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~~~------~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   97 (113)
T 1va8_A           24 ETVKIVRIEKARDIPLGATVRNE------MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH   97 (113)
T ss_dssp             EECEEEEEEECTTCCCCEEEEEC------SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CceEEEEEEeCCCCceeEEEEeC------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46778889888888999999875      247999999999999999955999999999999999999999999999888


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      +.|.|+|.|...
T Consensus        98 ~~v~l~v~r~~~  109 (113)
T 1va8_A           98 GTLTFVLIPSSG  109 (113)
T ss_dssp             EEEEEEEECCCC
T ss_pred             CeEEEEEEECCc
Confidence            899999987653

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.33  E-value=6.4e-12  Score=106.32  Aligned_cols=81  Identities=21%  Similarity=0.382  Sum_probs=70.0

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCE
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPI  170 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~  170 (684)
                      ++.+.| ...||||++.+|.+.   ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..  +..
T Consensus         3 ~v~l~k-~~~g~G~~i~~~~~~---~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~   78 (85)
T 2i04_A            3 HTKLRK-SSRGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS   78 (85)
T ss_dssp             EEEEEC-BTTBSSEEEEECCST---TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCE
T ss_pred             EEEEEE-CCCCCCEEEEcccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            355554 557999999987542   35799999999999999999999999999999999999999999999986  788


Q ss_pred             EEEEEEe
Q psy2533         171 VTLEIAK  177 (684)
Q Consensus       171 V~LvV~R  177 (684)
                      |.|+|.|
T Consensus        79 v~l~v~R   85 (85)
T 2i04_A           79 VDLELCR   85 (85)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9998865

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.33  E-value=2.8e-12  Score=108.40  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             cCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEec
Q psy2533          99 MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  178 (684)
Q Consensus        99 ~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~  178 (684)
                      ....+|||+|.+|.+..   .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++..+..|.|+|.|.
T Consensus         8 ~~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   83 (85)
T 1rgw_A            8 TGPGPWGFRLQGGKDFN---MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS   83 (85)
T ss_dssp             CCSSCCCEEECCCGGGT---SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESC
T ss_pred             eCCCccCEEEEeccCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEeC
Confidence            46689999999876543   479999999999999999 99999999999999999999999999998888899999875


Q ss_pred             C
Q psy2533         179 G  179 (684)
Q Consensus       179 ~  179 (684)
                      .
T Consensus        84 ~   84 (85)
T 1rgw_A           84 K   84 (85)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.33  E-value=5.3e-12  Score=113.09  Aligned_cols=87  Identities=16%  Similarity=0.341  Sum_probs=75.4

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.+. ..||||+|.+|.+.   ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus        23 ~~~~~v~l~~~-~~glG~~l~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g   98 (112)
T 2r4h_A           23 MDFYTVELERG-AKGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG   98 (112)
T ss_dssp             CCEEEEEEECB-TTBTSEEEEECGGG---TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CceEEEEEEcC-CCccCEEEeccccC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34566777654 47899999987543   247999999999999999999999999999999999999999999999889


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|..
T Consensus        99 ~~v~l~v~R~~  109 (112)
T 2r4h_A           99 RRVRLFLKRGE  109 (112)
T ss_dssp             TEEEEEEECCE
T ss_pred             CeEEEEEEeCC
Confidence            99999998864

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.32  E-value=3.7e-12  Score=113.73  Aligned_cols=83  Identities=19%  Similarity=0.319  Sum_probs=74.4

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      .+|.+.++...+|||++.+.      ..|++|..|.+||||+++|+|++||+|++|||.++.++++.+++.+++..++.|
T Consensus         4 ~~v~L~k~~~~glG~~i~~~------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v   77 (106)
T 2la8_A            4 FNVDLMKKAGKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKV   77 (106)
T ss_dssp             EEEEECCBSSSTTCCEEEEC------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCE
T ss_pred             EEEEEEeCCCCccCEEEEeC------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Confidence            45667778889999999862      247999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEecCc
Q psy2533         172 TLEIAKQGA  180 (684)
Q Consensus       172 ~LvV~R~~~  180 (684)
                      .|+|.|..+
T Consensus        78 ~l~v~R~~~   86 (106)
T 2la8_A           78 SMEVTRPKP   86 (106)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEeCCC
Confidence            999999754

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=1.5e-11  Score=109.15  Aligned_cols=90  Identities=26%  Similarity=0.408  Sum_probs=76.4

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCC---CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAG---QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV  165 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~---~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk  165 (684)
                      .....+.+.+ ...+|||+|.+|.+..   ....+++|..|.+++||+++| |++||+|++|||.++.++++.+++..++
T Consensus        14 ~~~~~~~l~~-~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~   91 (110)
T 1x5q_A           14 EEELTLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALR   91 (110)
T ss_dssp             CEEEEEEEEC-SSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             cceEEEEEec-CCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhh
Confidence            3444455544 4889999999986632   134689999999999999999 9999999999999999999999999999


Q ss_pred             cCCCEEEEEEEecCc
Q psy2533         166 RTGPIVTLEIAKQGA  180 (684)
Q Consensus       166 ~sg~~V~LvV~R~~~  180 (684)
                      ..+..|.|+|.|...
T Consensus        92 ~~g~~v~l~v~R~g~  106 (110)
T 1x5q_A           92 GAGTAVQMRVWRESG  106 (110)
T ss_dssp             SCCSEEEEEEEECSS
T ss_pred             CCCCeEEEEEEECCc
Confidence            889999999999764

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.32  E-value=1e-11  Score=110.51  Aligned_cols=86  Identities=28%  Similarity=0.476  Sum_probs=75.1

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..+.+.+.+ ...+|||.|.++.+     .+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..+.
T Consensus        15 ~~~~v~l~~-~~~~lG~~l~~~~~-----~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~   88 (111)
T 2dlu_A           15 HVEEVELIN-DGSGLGFGIVGGKT-----SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGN   88 (111)
T ss_dssp             EEEEEEEEC-CSSCCCEEEECCSS-----SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCS
T ss_pred             ceEEEEEEe-CCCccCEEEeccCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            456666665 56789999997643     379999999999999999999999999999999999999999999998889


Q ss_pred             EEEEEEEecCcc
Q psy2533         170 IVTLEIAKQGAI  181 (684)
Q Consensus       170 ~V~LvV~R~~~~  181 (684)
                      .|.|+|.|....
T Consensus        89 ~v~l~v~R~~~~  100 (111)
T 2dlu_A           89 SVRMLVARDPAG  100 (111)
T ss_dssp             EEEEEEEESCTT
T ss_pred             eEEEEEEeCCCC
Confidence            999999987643

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.32  E-value=5.2e-12  Score=108.68  Aligned_cols=79  Identities=20%  Similarity=0.315  Sum_probs=69.1

Q ss_pred             EEEEEe-cCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          93 SHSVRD-MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        93 ~V~v~k-~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      .+.+.+ ....+|||.+.+         ++||..|.+||||+++|+|++||+|++|||.++.+++|.+++.+|+.+++.|
T Consensus         3 ~v~l~~~~~~~~~G~~~~~---------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v   73 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLGS---------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKL   73 (88)
T ss_dssp             EEEEECBTTBCCCCEEEEE---------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEE
T ss_pred             EEEEEeCCCCCCCCEEEeC---------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            345554 456789999975         6999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCc
Q psy2533         172 TLEIAKQGA  180 (684)
Q Consensus       172 ~LvV~R~~~  180 (684)
                      .|+|.+...
T Consensus        74 ~L~v~~~~~   82 (88)
T 3e17_A           74 QLVVLRDLE   82 (88)
T ss_dssp             EEEECCC--
T ss_pred             EEEEeCCCc
Confidence            999977543

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5.2e-12  Score=110.95  Aligned_cols=90  Identities=24%  Similarity=0.332  Sum_probs=76.6

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      .....+.+.+. ..+|||.|.++.+.. ...+++|..|.+++||+++|+|++||+|++|||.++.++++.+++.+++..+
T Consensus        10 ~~~~~v~l~~~-~~g~G~~l~~~~~~~-~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   87 (104)
T 2djt_A           10 SGHFSVELVRG-YAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGG   87 (104)
T ss_dssp             CCCEEEEEECC-SSSCCEEEECCEETT-EECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTC
T ss_pred             CceEEEEEEeC-CCCccEEEEeccCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            44566666654 479999999875531 2357999999999999999999999999999999999999999999999888


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..|.|+|.|...
T Consensus        88 ~~v~l~v~R~g~   99 (104)
T 2djt_A           88 PQLHLVIRRPLS   99 (104)
T ss_dssp             SEEEEEECCCCC
T ss_pred             CeEEEEEEECCC
Confidence            999999988753

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.31  E-value=5.5e-12  Score=110.80  Aligned_cols=87  Identities=25%  Similarity=0.315  Sum_probs=73.2

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCC---CC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGA---GQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~---~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      +....|.+.+  ..+|||+|.||.+.   +.  ...+++|..|.++|||++ | |++||+|++|||.++.++++.+++.+
T Consensus        10 ~~~~~v~l~~--~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~   85 (103)
T 1n7t_A           10 KQEIRVRVEK--DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSL   85 (103)
T ss_dssp             CCCEEEEEEC--SSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             cEEEEEEEcc--CCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3444555554  45999999997642   11  346899999999999999 8 99999999999999999999999999


Q ss_pred             HHcCCCEEEEEEEecC
Q psy2533         164 LVRTGPIVTLEIAKQG  179 (684)
Q Consensus       164 Lk~sg~~V~LvV~R~~  179 (684)
                      ++..+..|.|+|.|..
T Consensus        86 ~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           86 LKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHCCSEEEEEEECCC
T ss_pred             hhcCCCeEEEEEEecC
Confidence            9998999999998864

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.31  E-value=8e-12  Score=107.20  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=73.6

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEE
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT  172 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~  172 (684)
                      ...+......+|||++.+|.+..   .+++|..|.++|||+++| |++||+|++|||.++.++.|.+++.+++..+..+.
T Consensus         4 ~~~v~~~~~~~~G~~l~~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   79 (91)
T 2pkt_A            4 TQQIDLQGPGPWGFRLVGGKDFE---QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLT   79 (91)
T ss_dssp             EEEEEEESSSCCSEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             cEEEEECCCCCCCEEEEccCCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            34444456789999999886532   479999999999999999 99999999999999999999999999999889999


Q ss_pred             EEEEecCc
Q psy2533         173 LEIAKQGA  180 (684)
Q Consensus       173 LvV~R~~~  180 (684)
                      |.|.|...
T Consensus        80 l~v~R~g~   87 (91)
T 2pkt_A           80 LTVARSEH   87 (91)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCc
Confidence            99999764

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.31  E-value=6.2e-12  Score=111.18  Aligned_cols=83  Identities=13%  Similarity=0.325  Sum_probs=74.6

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .+.|.+.|..+.+|||++..+.+     .+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..+..
T Consensus        13 ~~~v~l~K~~~~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~   87 (97)
T 2ejy_A           13 VRLIQFEKVTEEPMGICLKLNEK-----QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGM   87 (97)
T ss_dssp             CEEEEEEECSSSCCSEEEEECTT-----CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEE
T ss_pred             cEEEEEEeCCCCCeeEEEEeCCC-----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            46788889899999999986432     3799999999999999999999999999999999999999999999988888


Q ss_pred             EEEEEEec
Q psy2533         171 VTLEIAKQ  178 (684)
Q Consensus       171 V~LvV~R~  178 (684)
                      |.|+|.+.
T Consensus        88 v~L~V~~~   95 (97)
T 2ejy_A           88 ISLKVIPN   95 (97)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEC
Confidence            99988754

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=107.39  Aligned_cols=88  Identities=26%  Similarity=0.364  Sum_probs=75.7

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..++|.+.+.. .+|||++.+..+.. ...+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..+.
T Consensus         3 ~~r~v~l~k~~-~~~G~~l~~~~~~~-~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   79 (96)
T 2v90_A            3 KPRCLHLEKGP-QGFGFLLREEKGLD-GRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGS   79 (96)
T ss_dssp             CCEEEEEECBT-TBSCEEEEEEECTT-SCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CCEEEEEEeCC-CcccEEEEeccCCC-CCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            35677777655 59999999854332 23589999999999999999 99999999999999999999999999998889


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .|.|+|.|...
T Consensus        80 ~v~l~v~r~~~   90 (96)
T 2v90_A           80 CVSLTVVDPEA   90 (96)
T ss_dssp             EEEEEEECCCT
T ss_pred             EEEEEEECCCC
Confidence            99999998764

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.30  E-value=1.4e-11  Score=106.63  Aligned_cols=86  Identities=27%  Similarity=0.437  Sum_probs=73.9

Q ss_pred             EEEEEecCCCcccEEEEeccCCCC---CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQ---DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~---~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      .+.+.+ ...+|||+|.+|.+...   ...+++|..|.++|||+++| |++||+|++|||.++.++++.+++..++..+.
T Consensus         6 ~v~~~~-~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~   83 (97)
T 2w4f_A            6 TLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGT   83 (97)
T ss_dssp             EEEEEC-BTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSCS
T ss_pred             EEEEEe-CCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCCCC
Confidence            344444 48899999999866431   34689999999999999999 99999999999999999999999999988899


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .|.|+|.|...
T Consensus        84 ~v~l~v~R~g~   94 (97)
T 2w4f_A           84 AVQMRVWRERE   94 (97)
T ss_dssp             EEEEEEECCSS
T ss_pred             eEEEEEEeCCc
Confidence            99999998753

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.30  E-value=2.1e-11  Score=108.29  Aligned_cols=83  Identities=31%  Similarity=0.411  Sum_probs=73.0

Q ss_pred             ecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEE
Q psy2533          98 DMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEI  175 (684)
Q Consensus        98 k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV  175 (684)
                      .....+|||+|.++.+...+..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..  +..|.|+|
T Consensus        18 ~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v   97 (111)
T 2koj_A           18 KKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV   97 (111)
T ss_dssp             ECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEE
T ss_pred             EECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEE
Confidence            3456899999998765433446899999999999999999999999999999999999999999999975  78999999


Q ss_pred             EecCc
Q psy2533         176 AKQGA  180 (684)
Q Consensus       176 ~R~~~  180 (684)
                      .|...
T Consensus        98 ~R~~~  102 (111)
T 2koj_A           98 FRQEE  102 (111)
T ss_dssp             EECCC
T ss_pred             EeCCC
Confidence            98764

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.30  E-value=1.4e-11  Score=107.13  Aligned_cols=85  Identities=28%  Similarity=0.359  Sum_probs=73.1

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      .+|.+ ++..++|||+|.++.+.   ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..+..|
T Consensus         7 ~~v~l-~~~~~~lG~~i~~~~~~---~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v   82 (97)
T 1n7e_A            7 YTVEL-KRYGGPLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETV   82 (97)
T ss_dssp             EEEEE-ECTTSCCCEEEECCSST---TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             EEEEE-EeCCCCcCEEEEcccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            44555 45677799999976432   247999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEEecCc
Q psy2533         172 TLEIAKQGA  180 (684)
Q Consensus       172 ~LvV~R~~~  180 (684)
                      .|+|.|...
T Consensus        83 ~l~v~R~~~   91 (97)
T 1n7e_A           83 TLKIKKQTD   91 (97)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEeCCC
Confidence            999988754

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.30  E-value=7.1e-12  Score=110.24  Aligned_cols=86  Identities=21%  Similarity=0.238  Sum_probs=74.7

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ...+|.+.  ...+|||+|.+|.+..   .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++..+.
T Consensus         5 ~~~~v~l~--~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~   78 (103)
T 1wf7_A            5 SSGSVSLV--GPAPWGFRLQGGKDFN---MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTG   78 (103)
T ss_dssp             CCEEEEEE--SSSCCSCCEEEETTTT---EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSS
T ss_pred             CEEEEEEe--CCCccCEEEeccccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            34455554  5788999999987643   479999999999999999 99999999999999999999999999998889


Q ss_pred             EEEEEEEecCcc
Q psy2533         170 IVTLEIAKQGAI  181 (684)
Q Consensus       170 ~V~LvV~R~~~~  181 (684)
                      .+.|+|.|....
T Consensus        79 ~v~l~v~R~g~~   90 (103)
T 1wf7_A           79 SLNMTLQRASAA   90 (103)
T ss_dssp             EEEEEECCCSCC
T ss_pred             eEEEEEEeCCCc
Confidence            999999887653

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.30  E-value=1e-11  Score=108.68  Aligned_cols=91  Identities=25%  Similarity=0.387  Sum_probs=74.9

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC------CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ------DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~------~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      ...++.+.+....+|||++.++.+...      ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+
T Consensus         4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   83 (103)
T 2fcf_A            4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   83 (103)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            346778877777899999998654321      12489999999999999999999999999999999999999999999


Q ss_pred             HHcCCCEEEEEEEecCc
Q psy2533         164 LVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       164 Lk~sg~~V~LvV~R~~~  180 (684)
                      |+..++.|.|+|.|...
T Consensus        84 l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           84 IRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             HHTCCSSEEEEEECCCC
T ss_pred             HHhCCCcEEEEEEECCC
Confidence            99888899999988653

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.29  E-value=9.5e-12  Score=107.21  Aligned_cols=85  Identities=19%  Similarity=0.276  Sum_probs=72.7

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..+++.+.+ ...+|||.+.++.+.    .+++|..|.++|||+++| |++||+|++|||.++.+++|.+++.+|+..++
T Consensus         5 ~~r~v~l~~-~~~~~G~~l~~~~~~----~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   78 (95)
T 3r68_A            5 QPRVVVIKK-GSNGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGD   78 (95)
T ss_dssp             CCEEEEEEC-BTTBCSCEEEEC--C----CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CcEEEEEec-CCCcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            346667765 567999999976543    379999999999999999 99999999999999999999999999999999


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .+.+++.|...
T Consensus        79 ~~~~~~~r~~~   89 (95)
T 3r68_A           79 QTTLLVLDKEL   89 (95)
T ss_dssp             EEEEEEEECC-
T ss_pred             eEEEEEECCcc
Confidence            99998888653

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.29  E-value=7.5e-12  Score=110.31  Aligned_cols=86  Identities=20%  Similarity=0.283  Sum_probs=77.0

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .+++.+.+.++.+|||.+.++.+.    .+++|..|.+||||+++| |++||+|++|||.++.+++|.+++.+|+..+..
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   76 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS   76 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTTC----CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE
Confidence            467888888889999999976442    378999999999999999 999999999999999999999999999999999


Q ss_pred             EEEEEEecCcc
Q psy2533         171 VTLEIAKQGAI  181 (684)
Q Consensus       171 V~LvV~R~~~~  181 (684)
                      |.|+|.|....
T Consensus        77 v~l~v~r~~~~   87 (106)
T 3ngh_A           77 VTLLVLDGDSY   87 (106)
T ss_dssp             EEEEEECHHHH
T ss_pred             EEEEEEECCee
Confidence            99999987643

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.29  E-value=6.7e-12  Score=113.70  Aligned_cols=86  Identities=19%  Similarity=0.316  Sum_probs=72.0

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC---
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT---  167 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s---  167 (684)
                      .+.+.+.+  ..||||+|.||.+...  .+++|..|.++|||+++|.|++||+|++|||.++.+++|.+++.+|+..   
T Consensus        19 ~~~~~~~~--~~glG~~i~gg~~~~~--~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~   94 (118)
T 1v6b_A           19 VRLLRIKK--EGSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQ   94 (118)
T ss_dssp             EEEEEEES--CSCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHH
T ss_pred             EEEEEECC--CCccCEEEEcccCCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhc
Confidence            34444433  4599999999876542  3599999999999999955999999999999999999999999999865   


Q ss_pred             -CCEEEEEEEecCc
Q psy2533         168 -GPIVTLEIAKQGA  180 (684)
Q Consensus       168 -g~~V~LvV~R~~~  180 (684)
                       +..|.|+|.|..+
T Consensus        95 ~g~~v~l~v~r~~~  108 (118)
T 1v6b_A           95 GGDWIDLVVAVCPP  108 (118)
T ss_dssp             TCSEEEEEEECCCS
T ss_pred             CCCeEEEEEEeCCc
Confidence             7899999999654

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.28  E-value=3.4e-12  Score=109.72  Aligned_cols=84  Identities=27%  Similarity=0.348  Sum_probs=71.0

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .++|.+.|... +|||++.++.+.    .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..+..
T Consensus         4 pr~v~l~k~~~-~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   77 (91)
T 2vsp_A            4 PKLCRLAKGEN-GYGFHLNAIRGL----PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKN   77 (91)
T ss_dssp             EEEEEEECBTT-BTSCCCBCCTTC----SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSE
T ss_pred             cEEEEEEeCCC-cccEEEEeccCC----CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            46777777655 899999875442    378999999999999999 999999999999999999999999999988889


Q ss_pred             EEEEEEecCc
Q psy2533         171 VTLEIAKQGA  180 (684)
Q Consensus       171 V~LvV~R~~~  180 (684)
                      |.|+|.|...
T Consensus        78 v~l~v~r~~~   87 (91)
T 2vsp_A           78 VTLLVCGKKA   87 (91)
T ss_dssp             EEEEEEC---
T ss_pred             EEEEEEeCCc
Confidence            9999998753

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.27  E-value=1.4e-11  Score=112.85  Aligned_cols=90  Identities=26%  Similarity=0.390  Sum_probs=76.8

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCC------CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHH
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQ------DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL  164 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~------~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lL  164 (684)
                      .+.+.+.+....+|||++.++.+...      ...|++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|
T Consensus        25 p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l  104 (123)
T 2iwq_A           25 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI  104 (123)
T ss_dssp             CEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46778877777899999998654321      135899999999999999999999999999999999999999999999


Q ss_pred             HcCCCEEEEEEEecCc
Q psy2533         165 VRTGPIVTLEIAKQGA  180 (684)
Q Consensus       165 k~sg~~V~LvV~R~~~  180 (684)
                      +..++.|.|+|.|..+
T Consensus       105 ~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A          105 RKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             HHCCSSEEEEEECCCC
T ss_pred             HcCCCeEEEEEEECCc
Confidence            9988899999988653

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=8.8e-12  Score=107.89  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=71.8

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      ..|.+  ....+|||.+.+|.+..   .+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+++..+..+
T Consensus        10 ~~v~l--~~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v   83 (94)
T 2eeg_A           10 HSVTL--RGPSPWGFRLVGGRDFS---APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHL   83 (94)
T ss_dssp             EEEEE--CCSSCCSCCEECCTTTT---SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCE
T ss_pred             EEEEE--eCCCccCEEEECccCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            34444  55679999999987643   479999999999999999 9999999999999999999999999999888899


Q ss_pred             EEEEEecC
Q psy2533         172 TLEIAKQG  179 (684)
Q Consensus       172 ~LvV~R~~  179 (684)
                      .|+|.|..
T Consensus        84 ~l~v~R~g   91 (94)
T 2eeg_A           84 TLSVSSGP   91 (94)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEeCC
Confidence            99998865

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.26  E-value=6.4e-12  Score=108.78  Aligned_cols=86  Identities=16%  Similarity=0.225  Sum_probs=76.4

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      ..++.+.++...+|||+|.+|.+.   ..+++|..|.+++||+++| |++||+|++|||.++.+++|.+++.+|+..+..
T Consensus         5 ~~~~~~~~~~~~~lG~~l~~g~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   80 (94)
T 1vb7_A            5 SSGLTVDVAGPAPWGFRISGGRDF---HTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASP   80 (94)
T ss_dssp             CCCEEEEECSSSCCSBCCEEETTT---TEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS
T ss_pred             cEEEEEEecCCCCccEEEecccCC---CCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            455777777888999999988653   2589999999999999999 999999999999999999999999999988888


Q ss_pred             EEEEEEecCc
Q psy2533         171 VTLEIAKQGA  180 (684)
Q Consensus       171 V~LvV~R~~~  180 (684)
                      +.|+|.|...
T Consensus        81 v~l~v~R~g~   90 (94)
T 1vb7_A           81 LRLQLDRSSG   90 (94)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEECCc
Confidence            9999998753

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.26  E-value=1.6e-11  Score=119.88  Aligned_cols=88  Identities=25%  Similarity=0.444  Sum_probs=79.1

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.+.+..+|||+|.||.+.   ..+++|..|.+||||+++| |++||+|++|||.++.++++.+++.+|+. +
T Consensus        83 ~~~~~v~l~k~~~~~lG~~i~~~~~~---~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~  157 (192)
T 3k1r_A           83 RKLKEVRLDRLHPEGLGLSVRGGLEF---GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-E  157 (192)
T ss_dssp             SSCEEEEEETTSTTCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-S
T ss_pred             CceEEEEEEeCCCCceeEEEEccccc---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-C
Confidence            45678889888888999999988653   2589999999999999999 99999999999999999999999999999 8


Q ss_pred             CEEEEEEEecCcc
Q psy2533         169 PIVTLEIAKQGAI  181 (684)
Q Consensus       169 ~~V~LvV~R~~~~  181 (684)
                      ..|.|+|.|.+..
T Consensus       158 ~~v~l~v~r~g~~  170 (192)
T 3k1r_A          158 KTVSIKVRHIGLI  170 (192)
T ss_dssp             SEEEEEEEECCEE
T ss_pred             CeEEEEEEECCcc
Confidence            9999999998753

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.25  E-value=2.5e-11  Score=109.22  Aligned_cols=89  Identities=27%  Similarity=0.370  Sum_probs=77.4

Q ss_pred             CCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          88 DSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        88 ~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ....++|.+.+. ..||||+|.++.+    ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..
T Consensus        12 ~~~~~~v~l~k~-~~glG~~l~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   86 (119)
T 1tp5_A           12 PREPRRIVIHRG-STGLGFNIVGGED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA   86 (119)
T ss_dssp             CCSCEEEEEECT-TSCCCEEEEECGG----GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             CCccEEEEEEEC-CCCccEEEecCCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            356677877764 4679999998753    24799999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEecCcc
Q psy2533         168 GPIVTLEIAKQGAI  181 (684)
Q Consensus       168 g~~V~LvV~R~~~~  181 (684)
                      +..+.|+|.|....
T Consensus        87 ~~~v~l~v~r~~~~  100 (119)
T 1tp5_A           87 GQTVTIIAQYKPEE  100 (119)
T ss_dssp             CSEEEEEEEECHHH
T ss_pred             CCeEEEEEEECCch
Confidence            99999999987643

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.25  E-value=1.8e-11  Score=106.61  Aligned_cols=85  Identities=20%  Similarity=0.274  Sum_probs=71.6

Q ss_pred             EEEEecCCCcccEEEEeccCCC----CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          94 HSVRDMLRQEAKLSEMSEEGAG----QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        94 V~v~k~~~~GLGfsI~GG~~~~----~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      +.+ ++.+.+|||++.++....    ....|++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..+.
T Consensus         6 v~l-~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   83 (99)
T 3khf_A            6 IVI-HSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGN   83 (99)
T ss_dssp             EEE-EC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             EEE-EeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            444 457889999999764321    112378999999999999999 99999999999999999999999999999999


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .+.|+|.|...
T Consensus        84 ~v~l~v~r~~~   94 (99)
T 3khf_A           84 KISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECSCS
T ss_pred             EEEEEEEECCC
Confidence            99999998653

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.9e-11  Score=105.79  Aligned_cols=87  Identities=24%  Similarity=0.358  Sum_probs=75.8

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.+.....|||++.++.+.   ..+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+++. +
T Consensus         9 ~~~~~v~l~~~~~~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~   83 (100)
T 2eeh_A            9 DIIHSVRVEKSPAGRLGFSVRGGSEH---GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-S   83 (100)
T ss_dssp             CEECCEEECCCSSSSCSEEEECCTTT---TCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-C
T ss_pred             CeEEEEEEEECCCCCccEEEEccccC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-C
Confidence            34666788777777899999986442   2489999999999999999 99999999999999999999999999988 7


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..|.|+|.|...
T Consensus        84 ~~v~l~v~R~g~   95 (100)
T 2eeh_A           84 SRLHMMVRRMGS   95 (100)
T ss_dssp             SSEEEEEEECSC
T ss_pred             CEEEEEEEECCc
Confidence            889999999764

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=9.5e-12  Score=107.67  Aligned_cols=83  Identities=23%  Similarity=0.300  Sum_probs=73.3

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..++|.+.|....+|||+|.+.      ..+++|..|.++|||+++|.|++||+|++|||.++ +.++.+++.+|+..++
T Consensus         6 ~~r~v~l~k~~~~~lG~~i~~~------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~   78 (91)
T 2e7k_A            6 SGRMVGIRKTAGEHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASG   78 (91)
T ss_dssp             CSCBCCBCCCTTCCCCEEEEES------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCS
T ss_pred             CcEEEEEEECCCCcEeEEEEec------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCC
Confidence            4566777777889999999872      24799999999999999988999999999999999 9999999999998888


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .|.|+|.|..
T Consensus        79 ~v~l~v~~~~   88 (91)
T 2e7k_A           79 SVILKILSGP   88 (91)
T ss_dssp             SBCEEEECCS
T ss_pred             eEEEEEEECC
Confidence            8999998753

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.25  E-value=5e-11  Score=108.44  Aligned_cols=83  Identities=33%  Similarity=0.416  Sum_probs=72.3

Q ss_pred             EecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEE
Q psy2533          97 RDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLE  174 (684)
Q Consensus        97 ~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~Lv  174 (684)
                      ......+|||+|.++.+...+..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..  +..|.|+
T Consensus        36 l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~  115 (121)
T 2kom_A           36 LKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL  115 (121)
T ss_dssp             EECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEE
T ss_pred             EEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEE
Confidence            44567899999998765433346899999999999999999999999999999999999999999999975  7889999


Q ss_pred             EEecC
Q psy2533         175 IAKQG  179 (684)
Q Consensus       175 V~R~~  179 (684)
                      |.|..
T Consensus       116 v~R~g  120 (121)
T 2kom_A          116 VFRQE  120 (121)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            98864

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.24  E-value=3.4e-11  Score=108.65  Aligned_cols=87  Identities=21%  Similarity=0.223  Sum_probs=76.2

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...++|.+.+...++|||++.+|.+..   .+++|..|.++|||+++|+|++||+|++|||.++.+.++.+++.+|+..+
T Consensus        23 ~~~~~V~l~~~~~~~lG~~l~~~~~~~---~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   99 (114)
T 2gzv_A           23 MVPGKVTLQKDAQNLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK   99 (114)
T ss_dssp             CCCEEEEEECCTTSCCSEEEEECCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCCEEEEEEECCCCcEeEEEEeCCCCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            356788888888888999999875532   47999999999999999999999999999999999999999999999888


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                      +.|.|+|.+.
T Consensus       100 ~~v~l~v~~~  109 (114)
T 2gzv_A          100 GEVTIHYNKL  109 (114)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEec
Confidence            8899988654

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.24  E-value=2.2e-11  Score=110.59  Aligned_cols=92  Identities=21%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCC-CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAG-QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~-~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ...++|.+.+....+|||+|.++.... ....+++|..|.+++||+++|+|++||+|++|||.++.++++.+++.+|+..
T Consensus        14 ~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   93 (122)
T 1v5q_A           14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            455667777777799999999873221 1235799999999999999999999999999999999999999999999876


Q ss_pred             --CCEEEEEEEecCc
Q psy2533         168 --GPIVTLEIAKQGA  180 (684)
Q Consensus       168 --g~~V~LvV~R~~~  180 (684)
                        +..|.|+|.|...
T Consensus        94 ~~g~~v~l~v~R~~~  108 (122)
T 1v5q_A           94 SITSKVTLEIEFDVA  108 (122)
T ss_dssp             TTTTCEEEEEEEECC
T ss_pred             CCCCeEEEEEEECCc
Confidence              6789999999764

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.3e-11  Score=108.86  Aligned_cols=86  Identities=19%  Similarity=0.334  Sum_probs=75.7

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...++|.+.| ...+|||+|.++.+    ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++..+
T Consensus         7 ~~~r~v~l~k-~~~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   80 (106)
T 2eei_A            7 GQPRLCYLVK-EGGSYGFSLKTVQG----KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSG   80 (106)
T ss_dssp             SSSEEEEEEC-CSSSCSCCEECCSS----CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHC
T ss_pred             CCCEEEEEEE-CCCCCCEEEEeccC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4567788877 68899999987643    3479999999999999999 9999999999999999999999999999888


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..+.|+|.|...
T Consensus        81 ~~v~l~v~r~~~   92 (106)
T 2eei_A           81 SRVMFLLVDKET   92 (106)
T ss_dssp             SEEEEEECCTTT
T ss_pred             CeEEEEEEcCch
Confidence            899999988754

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.23  E-value=2.7e-11  Score=106.15  Aligned_cols=85  Identities=21%  Similarity=0.300  Sum_probs=73.9

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..++|.+.+ ...+|||++.++.+    ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..+.
T Consensus         6 ~~r~v~l~k-~~~g~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   79 (102)
T 2d90_A            6 SGRVVVIKK-GSNGYGFYLRAGPE----QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGD   79 (102)
T ss_dssp             SSEEEEEEC-CSSSSSCEEEECSS----SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTT
T ss_pred             CCEEEEEee-CCCCccEEEEeecC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            456777766 55699999997543    2479999999999999999 99999999999999999999999999998899


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .|.|+|.|...
T Consensus        80 ~v~l~v~r~~~   90 (102)
T 2d90_A           80 QTTLLVLDKEA   90 (102)
T ss_dssp             EEEEEECSTTC
T ss_pred             EEEEEEEECCC
Confidence            99999987653

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.23  E-value=3.2e-11  Score=105.75  Aligned_cols=86  Identities=24%  Similarity=0.426  Sum_probs=70.9

Q ss_pred             eEEEEEec---CCCcccEEEEeccCCC---------CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHH
Q psy2533          92 KSHSVRDM---LRQEAKLSEMSEEGAG---------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEK  159 (684)
Q Consensus        92 ~~V~v~k~---~~~GLGfsI~GG~~~~---------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~e  159 (684)
                      ..+.+.+.   +..+|||++.||.+..         ....|++|..|.++|||+++| |++||+|++|||.++.+++|.+
T Consensus         6 ~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~   84 (104)
T 3sfj_A            6 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQ   84 (104)
T ss_dssp             EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             EEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            34445443   3347999999887642         234689999999999999999 9999999999999999999999


Q ss_pred             HHHHHHcC-CCEEEEEEEec
Q psy2533         160 AAEYLVRT-GPIVTLEIAKQ  178 (684)
Q Consensus       160 AV~lLk~s-g~~V~LvV~R~  178 (684)
                      ++.+|+.. +..|.|+|.|+
T Consensus        85 ~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           85 ARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHHHHTCTTCSEEEEEEEEC
T ss_pred             HHHHHHhCCCCEEEEEEEcC
Confidence            99999864 67899999874

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.23  E-value=3.7e-11  Score=103.32  Aligned_cols=82  Identities=34%  Similarity=0.552  Sum_probs=70.7

Q ss_pred             ecCCCcccEEEEeccCCCC-CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEE
Q psy2533          98 DMLRQEAKLSEMSEEGAGQ-DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA  176 (684)
Q Consensus        98 k~~~~GLGfsI~GG~~~~~-~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~  176 (684)
                      ++...+|||++.++.+... ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+..|.|+|.
T Consensus        11 ~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~   90 (97)
T 2iwn_A           11 TKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM   90 (97)
T ss_dssp             ECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEE
T ss_pred             ecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            4567889999998754221 235899999999999999999999999999999999999999999999988899999998


Q ss_pred             ecC
Q psy2533         177 KQG  179 (684)
Q Consensus       177 R~~  179 (684)
                      |..
T Consensus        91 r~g   93 (97)
T 2iwn_A           91 RRG   93 (97)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            864

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.23  E-value=2.6e-11  Score=108.53  Aligned_cols=88  Identities=31%  Similarity=0.312  Sum_probs=75.7

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      ...+.+. +...+|||+|.++.+..  ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..+..
T Consensus        18 ~~~v~l~-~~~~glG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   94 (116)
T 2dm8_A           18 EMIIEIS-KGRSGLGLSIVGGKDTP--LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK   94 (116)
T ss_dssp             CEEEEEE-CCSSCCCCCCBCCTTSS--CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSE
T ss_pred             EEEEEEE-ECCCcccEEEeCCCCCC--cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            3555554 45689999999876532  24799999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEEecCcc
Q psy2533         171 VTLEIAKQGAI  181 (684)
Q Consensus       171 V~LvV~R~~~~  181 (684)
                      |.|+|.|....
T Consensus        95 v~l~v~R~~~~  105 (116)
T 2dm8_A           95 VRLVVYRDEAH  105 (116)
T ss_dssp             EEEEEECCSSC
T ss_pred             EEEEEEeCCcc
Confidence            99999987654

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=107.90  Aligned_cols=88  Identities=16%  Similarity=0.229  Sum_probs=76.1

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.+.+.+....+|||+|.+|.+..   .+++|..|.++|||+++|.|++||+|++|||.++.++ +.+++.+++..+
T Consensus         8 ~~~~~~~v~~~~~~~~G~~~~gg~~~~---~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~   83 (100)
T 2edp_A            8 GSFQYVPVQLQGGAPWGFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSF   83 (100)
T ss_dssp             CCCEEEEEECCSCSCCCCCEEEEGGGT---EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCC
T ss_pred             CCcEEEEEEECCCCCcCEEEeccCCCC---CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCC
Confidence            455677777777789999999986543   4799999999999999933999999999999999997 899999999888


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..|.|+|.|...
T Consensus        84 ~~v~l~v~R~~~   95 (100)
T 2edp_A           84 RILKLIVRRRNS   95 (100)
T ss_dssp             SSCEEEEEECCC
T ss_pred             CeEEEEEEeCCC
Confidence            899999999753

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=4.6e-11  Score=102.76  Aligned_cols=82  Identities=13%  Similarity=0.156  Sum_probs=70.6

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .++|.+.+ ...+|||.+.++       .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..+..
T Consensus         4 ~r~v~l~~-~~~g~G~~l~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   74 (91)
T 2f5y_A            4 YRQITIPR-GKDGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE   74 (91)
T ss_dssp             EEEEEEEC-BTTBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             eEEEEEEe-CCCCccEEEecC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            45666665 457899999753       258999999999999999 999999999999999999999999999988889


Q ss_pred             EEEEEEecCcc
Q psy2533         171 VTLEIAKQGAI  181 (684)
Q Consensus       171 V~LvV~R~~~~  181 (684)
                      +.|+|.|..+.
T Consensus        75 v~l~v~R~~~~   85 (91)
T 2f5y_A           75 IILLVWRMVPQ   85 (91)
T ss_dssp             EEEEEEECC--
T ss_pred             EEEEEEeCCCC
Confidence            99999997643

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=1.5e-11  Score=107.44  Aligned_cols=85  Identities=21%  Similarity=0.345  Sum_probs=73.2

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      ..+.+.+ ...||||+|.++.+..   .+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..+..|
T Consensus        13 ~~v~l~~-~~~g~G~~~~~~~~~~---~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   88 (103)
T 1wfv_A           13 FTVDMEK-GAKGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRV   88 (103)
T ss_dssp             EECCEEC-CTTSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEE
T ss_pred             EEEEEec-CCCcCCEEEeccccCC---CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            3444443 4578999999876532   48999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEEecCc
Q psy2533         172 TLEIAKQGA  180 (684)
Q Consensus       172 ~LvV~R~~~  180 (684)
                      .|+|.|...
T Consensus        89 ~l~v~R~~~   97 (103)
T 1wfv_A           89 RLLLKRGTG   97 (103)
T ss_dssp             CEEEECTTC
T ss_pred             EEEEEECCC
Confidence            999988754

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.21  E-value=4.2e-11  Score=111.86  Aligned_cols=95  Identities=23%  Similarity=0.397  Sum_probs=76.3

Q ss_pred             CCCCCceEEEEEecC---CCcccEEEEeccCCC---------CCcccEEEEEecCCChhcccCccccCCeeeecCCeecC
Q psy2533          86 RLDSSMKSHSVRDML---RQEAKLSEMSEEGAG---------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLV  153 (684)
Q Consensus        86 ~~~s~~~~V~v~k~~---~~GLGfsI~GG~~~~---------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~  153 (684)
                      ..+...+.|.+.+.+   ..+|||+|.+|.+..         ....|++|..|.++|||+++| |++||+|++|||.++.
T Consensus        19 ~~~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~   97 (139)
T 2vz5_A           19 YFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMT   97 (139)
T ss_dssp             ---CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECT
T ss_pred             cCCCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcC
Confidence            444566777776644   347999999886532         123589999999999999999 9999999999999999


Q ss_pred             CCCHHHHHHHHHc-CCCEEEEEEEecCcc
Q psy2533         154 GITQEKAAEYLVR-TGPIVTLEIAKQGAI  181 (684)
Q Consensus       154 g~sh~eAV~lLk~-sg~~V~LvV~R~~~~  181 (684)
                      ++++.+++.+|+. .+..|.|+|.|....
T Consensus        98 ~~~~~~~~~~l~~~~g~~v~l~v~R~g~~  126 (139)
T 2vz5_A           98 MVTHDQARKRLTKRSEEVVRLLVTRQSLQ  126 (139)
T ss_dssp             TCCHHHHHHHHCCTTCSEEEEEEEECC--
T ss_pred             CCCHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence            9999999999987 467899999998643

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.20  E-value=1.3e-11  Score=135.85  Aligned_cols=160  Identities=12%  Similarity=0.145  Sum_probs=106.7

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAIYHGLATLLSQPSPVM  196 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~~~~~~stl~s~psP~~  196 (684)
                      .|++|..|.++|||+++| |++||+|++|||.++.+.  .+...++.  ..+..|.|+|.|.........++...+  ..
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~--~~  356 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIK--SH  356 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCHH--HH
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccCC--cc
Confidence            589999999999999999 999999999999999875  55555555  457899999999875432222111000  00


Q ss_pred             ccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcE
Q psy2533         197 TRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERF  276 (684)
Q Consensus       197 ~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIF  276 (684)
                                ..  .      ........  +|+.+            .++.....               ......|++
T Consensus       357 ----------~~--~------~~~~~~~~--~G~~l------------~~~~~~~~---------------~~~~~~Gv~  389 (451)
T 3pv2_A          357 ----------EQ--K------LQSNNPFL--YGLAL------------RAFEQESP---------------PHGNVIGVQ  389 (451)
T ss_dssp             ----------HH--H------HHHHSTTT--TTEEE------------EEEEEECT---------------TSCEEEEEE
T ss_pred             ----------cc--c------cccccccc--ccccc------------ccCChhHh---------------cccCCCceE
Confidence                      00  0      00000001  11111            11110000               001235789


Q ss_pred             EEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         277 YQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       277 V~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      |..|.  ++|++.| |++||+|++|||+.+.+  .++...+|+..+..|.|.|.|.+..
T Consensus       390 V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~~  445 (451)
T 3pv2_A          390 VVGASENSAGWRAG-IRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLRGPGS  445 (451)
T ss_dssp             EEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEETTEE
T ss_pred             EEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEECCEE
Confidence            99987  6788877 99999999999999975  4788888988888999999998754

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.20  E-value=2e-11  Score=108.43  Aligned_cols=89  Identities=27%  Similarity=0.386  Sum_probs=77.0

Q ss_pred             CCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          88 DSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        88 ~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ....+.|.+.+ ...+|||+|.++.+    ..+++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus        13 ~~~~~~v~l~k-~~~glG~~l~~~~~----~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~   87 (113)
T 1um7_A           13 AREPRKIILHK-GSTGLGFNIVGGED----GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRA   87 (113)
T ss_dssp             CCSEEEEEEEC-CSSCSSBCCBCCST----TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSC
T ss_pred             CCceEEEEEEE-CCCcccEEEEeccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34566777765 45799999998654    24799999999999999999999999999999999999999999999988


Q ss_pred             CCEEEEEEEecCcc
Q psy2533         168 GPIVTLEIAKQGAI  181 (684)
Q Consensus       168 g~~V~LvV~R~~~~  181 (684)
                      +..+.|+|.|+...
T Consensus        88 ~~~v~l~v~r~~~~  101 (113)
T 1um7_A           88 GQSVTIVAQYRPEE  101 (113)
T ss_dssp             CSEEEEEEECCHHH
T ss_pred             CCcEEEEEEECcch
Confidence            99999999987643

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.19  E-value=5.5e-11  Score=114.88  Aligned_cols=75  Identities=28%  Similarity=0.391  Sum_probs=67.9

Q ss_pred             CCcccEEEEeccCC---C--CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEE
Q psy2533         101 RQEAKLSEMSEEGA---G--QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI  175 (684)
Q Consensus       101 ~~GLGfsI~GG~~~---~--~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV  175 (684)
                      +.||||+|.||.+.   +  ....|++|..|.++|||++ | |++||+|++|||.++.+++|.+++.+++..+..|.|.|
T Consensus         1 ~~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v   78 (195)
T 2qbw_A            1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII   78 (195)
T ss_dssp             CCCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEE
T ss_pred             CCcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            46899999998642   1  1356899999999999999 8 99999999999999999999999999999999999999


Q ss_pred             Ee
Q psy2533         176 AK  177 (684)
Q Consensus       176 ~R  177 (684)
                      .|
T Consensus        79 ~r   80 (195)
T 2qbw_A           79 VR   80 (195)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.19  E-value=8.2e-11  Score=103.58  Aligned_cols=85  Identities=22%  Similarity=0.279  Sum_probs=71.7

Q ss_pred             CceEEEEEecCCCcccEEEEeccCC----CCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGA----GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV  165 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~----~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk  165 (684)
                      ..+.+.+.+...++|||+|.+....    .....+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+
T Consensus        15 ~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~   93 (104)
T 2z17_A           15 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIR   93 (104)
T ss_dssp             CCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            3456778777788999999984211    1123589999999999999999 9999999999999999999999999999


Q ss_pred             cCCCEEEEEE
Q psy2533         166 RTGPIVTLEI  175 (684)
Q Consensus       166 ~sg~~V~LvV  175 (684)
                      ..++.|.|+|
T Consensus        94 ~~~~~v~l~v  103 (104)
T 2z17_A           94 SSGNLLTIET  103 (104)
T ss_dssp             HTTTEEEEEC
T ss_pred             hCCCcEEEEE
Confidence            9888888875

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=106.52  Aligned_cols=81  Identities=20%  Similarity=0.233  Sum_probs=67.3

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--  167 (684)
                      ...+|.|.|. ..||||+|.++..      +.+|..|.+  +|...| |++||+|++|||.++.+++|.+++.+|+.+  
T Consensus        12 ~~~~V~L~Kg-~~G~GFsI~~~~~------g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~   81 (113)
T 3soe_A           12 LLVTIPLIKG-PKGFGFAIADSPT------GQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPV   81 (113)
T ss_dssp             EEEEEEEECB-TTBSSEEEEEETT------EEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSCT
T ss_pred             CEEEEEEEEC-CCcccEEEeCCCC------CcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3456777764 6799999976432      678999998  455555 999999999999999999999999999986  


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus        82 G~~v~L~V~R~g~   94 (113)
T 3soe_A           82 GADVPLLILRGGP   94 (113)
T ss_dssp             TCEEEEEEEESSC
T ss_pred             CCEEEEEEEECCc
Confidence            6799999999864

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.18  E-value=1.5e-11  Score=103.81  Aligned_cols=79  Identities=23%  Similarity=0.334  Sum_probs=69.0

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .++|.+.+. ..+|||++.++       .+++|..|.++|||+++| |++||+|++|||.++.+++|.+++.+|+..+..
T Consensus         3 ~r~v~l~~~-~~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   73 (83)
T 2kv8_A            3 VRSVEVARG-RAGYGFTLSGQ-------APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGV   73 (83)
T ss_dssp             EEEEEECCC-SSCCSCBCCCS-------SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSC
T ss_pred             cEEEEEEeC-CCcccEEEEcC-------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            456666554 47899998753       268999999999999999 999999999999999999999999999988888


Q ss_pred             EEEEEEec
Q psy2533         171 VTLEIAKQ  178 (684)
Q Consensus       171 V~LvV~R~  178 (684)
                      +.|+|.|.
T Consensus        74 v~l~v~R~   81 (83)
T 2kv8_A           74 LHMVIAEG   81 (83)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            99999875

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.18  E-value=1.3e-10  Score=100.52  Aligned_cols=82  Identities=18%  Similarity=0.338  Sum_probs=70.6

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...++|.+.+ ...+|||.+.+.       .+++|..|.+++||+++| |++||+|++|||.++.++++.+++..++ .+
T Consensus         7 ~~~r~v~l~~-~~~~~G~~l~~~-------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~-~g   76 (93)
T 2dls_A            7 GVQRCVIIQK-DQHGFGFTVSGD-------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SG   76 (93)
T ss_dssp             CCEEEEEEEC-SSSSCCEEEECS-------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT-SS
T ss_pred             CCCEEEEEEe-CCCceeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc-CC
Confidence            4456676654 557999999752       368999999999999999 9999999999999999999999999887 58


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..|.|+|.|...
T Consensus        77 ~~v~l~v~R~~~   88 (93)
T 2dls_A           77 AYVALTLLGSSS   88 (93)
T ss_dssp             SEEEEEEECCCC
T ss_pred             CEEEEEEEECCC
Confidence            999999998753

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.18  E-value=6.5e-11  Score=106.03  Aligned_cols=87  Identities=20%  Similarity=0.279  Sum_probs=77.2

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ...++.+.+....+|||.|.++.+.    .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..+.
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   87 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGN   87 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTTC----CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCS
T ss_pred             CCEEEEEeCCCCCcccEEEEEecCC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4677888888889999999875432    479999999999999999 99999999999999999999999999998899


Q ss_pred             EEEEEEEecCcc
Q psy2533         170 IVTLEIAKQGAI  181 (684)
Q Consensus       170 ~V~LvV~R~~~~  181 (684)
                      .|.|+|.|....
T Consensus        88 ~v~l~v~R~~~~   99 (114)
T 2edz_A           88 SVTLLVLDGDSY   99 (114)
T ss_dssp             EEEEEEECHHHH
T ss_pred             EEEEEEEECCcc
Confidence            999999987643

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.17  E-value=9.4e-11  Score=104.68  Aligned_cols=87  Identities=22%  Similarity=0.289  Sum_probs=76.5

Q ss_pred             CCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          87 LDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        87 ~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      .....+++.+.++...+|||+|.++.+.   ..+++|..|.+++||+++| |++||+|++|||.++.++.+.+++.+++.
T Consensus        12 ~~~~~~~v~~~~~~~~~lG~~l~~~~~~---~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~   87 (114)
T 1x5n_A           12 RENKEKKVFISLVGSRGLGCSISSGPIQ---KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKS   87 (114)
T ss_dssp             CCCSSEEEEECCCSSCCCCEEEEECCSS---SCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHH
T ss_pred             CCCCcEEEEEEEcCCCceeEEEeecCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            3456788888888899999999987543   2479999999999999999 99999999999999999999999999987


Q ss_pred             CCCEEEEEEEec
Q psy2533         167 TGPIVTLEIAKQ  178 (684)
Q Consensus       167 sg~~V~LvV~R~  178 (684)
                      . ..+.|+|.|.
T Consensus        88 ~-~~v~l~v~r~   98 (114)
T 1x5n_A           88 S-RSLTISIVAA   98 (114)
T ss_dssp             C-SSEEEEECSS
T ss_pred             C-CeEEEEEEcC
Confidence            6 5799999876

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=1.1e-10  Score=101.27  Aligned_cols=76  Identities=25%  Similarity=0.399  Sum_probs=65.5

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      ...+........+|||.+.+         | +|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..+..
T Consensus        13 ~~~~i~~~~~~~~lG~~~~~---------G-~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~   81 (90)
T 1y7n_A           13 TTVLIRRPDLRYQLGFSVQN---------G-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGE   81 (90)
T ss_dssp             EEEEEEESSTTSCCCEEEET---------T-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE
T ss_pred             ceEEEEeCCCccccCeEecC---------C-EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            33344444557889999964         2 899999999999999 999999999999999999999999999988889


Q ss_pred             EEEEEEe
Q psy2533         171 VTLEIAK  177 (684)
Q Consensus       171 V~LvV~R  177 (684)
                      |.|+|.+
T Consensus        82 v~l~v~p   88 (90)
T 1y7n_A           82 IHMKTMP   88 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9998864

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.77  E-value=3.3e-12  Score=115.26  Aligned_cols=84  Identities=21%  Similarity=0.323  Sum_probs=73.7

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcc-cCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADA-NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r-~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ..+.|.+.+....+|||++.+|.+..   .+++|..|.++|||++ +| |++||+|++|||.++.++++.+++.+|+..+
T Consensus        27 ~~~~v~l~k~~~~glG~~l~~g~~~~---~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~  102 (112)
T 2lob_A           27 GIRKVLLLKEDHEGLGISITGGKEHG---VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQR  102 (112)
Confidence            45678888888899999999876543   4799999999999999 56 9999999999999999999999999999888


Q ss_pred             CEEEEEEEe
Q psy2533         169 PIVTLEIAK  177 (684)
Q Consensus       169 ~~V~LvV~R  177 (684)
                      +.|.|+|.+
T Consensus       103 ~~v~l~V~~  111 (112)
T 2lob_A          103 GEIEFEVVY  111 (112)
Confidence            888888753

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.15  E-value=1.5e-10  Score=98.62  Aligned_cols=81  Identities=20%  Similarity=0.322  Sum_probs=65.9

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TG  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg  168 (684)
                      ..+|.+.+ ...||||++.++.+    ..+++|..| ++|||+ +| |++||+|++|||.++.+++|.+++.+|+.  .+
T Consensus         4 ~~~v~l~k-~~~g~G~~~~~~~~----~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g   75 (88)
T 3bpu_A            4 LITVHIVK-GPMGFGFTIADSPG----GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKG   75 (88)
T ss_dssp             EEEEEEEC-BTTBSSCEEEECTT----SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTT
T ss_pred             EEEEEEEc-CCCceeEEEEecCC----CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Confidence            34566655 45899999987543    247999887 999999 88 99999999999999999999999999985  57


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|..
T Consensus        76 ~~v~l~v~R~g   86 (88)
T 3bpu_A           76 SEVTLLVQRQT   86 (88)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEEEeCC
Confidence            89999998865

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.14  E-value=3.4e-11  Score=106.04  Aligned_cols=80  Identities=18%  Similarity=0.150  Sum_probs=71.5

Q ss_pred             ecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEe
Q psy2533          98 DMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  177 (684)
Q Consensus        98 k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R  177 (684)
                      .....+|||++.+|.+..   .+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+|+..+..|.|+|.|
T Consensus        11 ~~~~~~lG~~l~~g~~~~---~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R   86 (103)
T 1v5l_A           11 LPGPAPWGFRLSGGIDFN---QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR   86 (103)
T ss_dssp             EESSSCCSBCCEEETTTT---EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECC
T ss_pred             EcCCCCcCEEEeccccCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence            356779999999886542   479999999999999999 9999999999999999999999999999888999999998


Q ss_pred             cCcc
Q psy2533         178 QGAI  181 (684)
Q Consensus       178 ~~~~  181 (684)
                      ....
T Consensus        87 ~g~~   90 (103)
T 1v5l_A           87 AETR   90 (103)
T ss_dssp             CTTT
T ss_pred             CCeE
Confidence            7653

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.13  E-value=1.1e-10  Score=103.45  Aligned_cols=61  Identities=15%  Similarity=0.254  Sum_probs=55.2

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCccc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAIY  334 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~~~  334 (684)
                      .+||+.|.  |+|+++|.|++||+|++|||+++.+++|.+++.+|++.  +..++|.+.+|...+
T Consensus        29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~~~~   93 (95)
T 3gge_A           29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKSS   93 (95)
T ss_dssp             CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEECSCE
T ss_pred             cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECccccc
Confidence            47899997  89999999999999999999999999999999999995  458999999886554

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.13  E-value=2.6e-10  Score=101.35  Aligned_cols=86  Identities=22%  Similarity=0.254  Sum_probs=74.5

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPI  170 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~  170 (684)
                      .+|.+.+....+|||.+.++.+    ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+|+.. +..
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~~----~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~   78 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASET   78 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSS----SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSS
T ss_pred             EEEEEEcCCCCceeEEEEecCC----CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCc
Confidence            4567777778899999997643    34799999999999999994499999999999999999999999999875 678


Q ss_pred             EEEEEEecCcc
Q psy2533         171 VTLEIAKQGAI  181 (684)
Q Consensus       171 V~LvV~R~~~~  181 (684)
                      +.|.|.|....
T Consensus        79 v~l~v~R~g~~   89 (112)
T 1qau_A           79 HVVLILRGPEG   89 (112)
T ss_dssp             EEEEEEECCTT
T ss_pred             EEEEEEeCCcc
Confidence            99999998754

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.13  E-value=2e-10  Score=99.80  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=69.0

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC-
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-  169 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~-  169 (684)
                      .+.+.+.+ ...||||++.++.+    ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+...+ 
T Consensus        10 ~~~~~l~~-~~~g~G~~~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   83 (98)
T 2jxo_A           10 PRLCTMKK-GPSGYGFNLHSDKS----KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (98)
T ss_dssp             CEEEEEEC-TTTCCCEEEECCCS----SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             cEEEEEEe-CCCcccEEEEecCC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            35566654 56799999987653    2379999999999999999 99999999999999999999999999998755 


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .+.|+|.|..
T Consensus        84 ~~~l~v~R~g   93 (98)
T 2jxo_A           84 TKLLVVDRET   93 (98)
T ss_dssp             EEEEECCHHH
T ss_pred             EEEEEEECCc
Confidence            4567777654

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=6.3e-10  Score=99.90  Aligned_cols=85  Identities=26%  Similarity=0.332  Sum_probs=73.7

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..+.|.+.+. ..+|||.+.++.+     .+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+++..+.
T Consensus        19 ~~~~v~l~~~-~~~lG~~~~~~~~-----~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~   91 (117)
T 1uit_A           19 EPRHVKVQKG-SEPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCD   91 (117)
T ss_dssp             CCEEEEEECS-SCCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCS
T ss_pred             CCEEEEEEeC-CCCccEEEEccCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4556777654 4899999987643     379999999999999999 99999999999999999999999988888899


Q ss_pred             EEEEEEEecCcc
Q psy2533         170 IVTLEIAKQGAI  181 (684)
Q Consensus       170 ~V~LvV~R~~~~  181 (684)
                      .|.|+|.|....
T Consensus        92 ~v~l~v~r~~~~  103 (117)
T 1uit_A           92 TITILAQYNPHV  103 (117)
T ss_dssp             EEEEEECCCSCC
T ss_pred             eEEEEEEECCch
Confidence            999999987654

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.12  E-value=2.4e-10  Score=109.30  Aligned_cols=86  Identities=29%  Similarity=0.416  Sum_probs=73.4

Q ss_pred             EEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          94 HSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        94 V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      +.+.+. ..+|||++.++.+...  ...|++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+.++..|
T Consensus       104 v~l~~~-~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v  182 (196)
T 3gsl_A          104 IKLIKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV  182 (196)
T ss_dssp             EEEEEB-TTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEE
T ss_pred             EEEecC-CCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeE
Confidence            334333 4589999998765432  2458999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCc
Q psy2533         172 TLEIAKQGA  180 (684)
Q Consensus       172 ~LvV~R~~~  180 (684)
                      .|+|.|...
T Consensus       183 ~l~v~R~~~  191 (196)
T 3gsl_A          183 YLKVAKPSN  191 (196)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEeCCCC
Confidence            999998754

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.11  E-value=2.6e-10  Score=105.53  Aligned_cols=81  Identities=20%  Similarity=0.299  Sum_probs=70.2

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TG  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg  168 (684)
                      ...+.+ .+...+|||+|.+.      ..+++|..|.++|||+++|+|++||+|++|||.++.+.+|.+++.+|+.  .+
T Consensus        28 ~~~~~l-~k~~~glG~~i~~~------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G  100 (126)
T 1wif_A           28 VIQTKL-TVGNLGLGLVVIQN------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIG  100 (126)
T ss_dssp             EEEEEE-ECCTTCCCCCEEEE------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSS
T ss_pred             eEEEEE-ecCCceEeEEEEcC------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCC
Confidence            334444 45678999999863      2379999999999999999999999999999999999999999999997  47


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                      ..|.|+|.|.
T Consensus       101 ~~v~l~V~R~  110 (126)
T 1wif_A          101 TVLQIKAYRG  110 (126)
T ss_dssp             CEEEEEEESS
T ss_pred             CEEEEEEEEC
Confidence            8899999987

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=4.9e-11  Score=104.02  Aligned_cols=81  Identities=17%  Similarity=0.278  Sum_probs=70.3

Q ss_pred             CceEEEEEecCC-CcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          90 SMKSHSVRDMLR-QEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        90 ~~~~V~v~k~~~-~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ..++|.+.+... .+|||.|.+       ..+++|..|.++|||+ .| |++||+|++|||.++.+++|.+++.+++..+
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~-------~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g   78 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISE-------SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAE   78 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCS-------SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCS
T ss_pred             ccEEEEEEECCCCCcccEEEec-------CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            356677766664 489999975       2479999999999995 66 9999999999999999999999999999989


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|..
T Consensus        79 ~~v~l~v~R~~   89 (96)
T 2edv_A           79 DSLSITVVRCT   89 (96)
T ss_dssp             SCEEEEEEECC
T ss_pred             CeEEEEEEECC
Confidence            99999999976

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.10  E-value=2.2e-10  Score=111.34  Aligned_cols=83  Identities=20%  Similarity=0.343  Sum_probs=72.1

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEE
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT  172 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~  172 (684)
                      ++.+.+....+|||++.++.      .++||..|.+||||+++|+|++||+|++|||+++.+++|.+++.+|+..+..|.
T Consensus       116 ~v~l~~~~~~~lG~~~~~~~------~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~  189 (206)
T 3r0h_A          116 NVDLMKKAGKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVS  189 (206)
T ss_dssp             EEEEECCTTCCCCEEEEECS------SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             EEEEecCCCCccCeEEEcCC------ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            34444555678999998542      479999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcc
Q psy2533         173 LEIAKQGAI  181 (684)
Q Consensus       173 LvV~R~~~~  181 (684)
                      |+|.|..+.
T Consensus       190 L~V~R~~~~  198 (206)
T 3r0h_A          190 MEVTRPKPT  198 (206)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEeCCCC
Confidence            999997643

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=1e-10  Score=102.31  Aligned_cols=87  Identities=28%  Similarity=0.443  Sum_probs=71.8

Q ss_pred             CCceEEEEEec-CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDM-LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~-~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ...+.+.+.+. ...+|||+|.++.+..   .+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+++..
T Consensus         7 ~~~~~v~l~~~~~~~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~   82 (101)
T 1uez_A            7 GEVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS   82 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS
T ss_pred             CccEEEEEEECCCCCcccEEEeCCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCC
Confidence            44566666553 5679999999875432   479999999999999999 999999999999999999998888877654


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                       ..|.|+|.|...
T Consensus        83 -~~v~l~v~R~g~   94 (101)
T 1uez_A           83 -KKLVLSVYSAGR   94 (101)
T ss_dssp             -SSCCEEECCCCC
T ss_pred             -CeEEEEEEECCc
Confidence             578899987653

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=6.6e-10  Score=101.44  Aligned_cols=87  Identities=28%  Similarity=0.405  Sum_probs=73.7

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..+++.+......+|||.+.++...   ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++..++.. .
T Consensus        20 ~~~~v~v~~~~~~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~   94 (128)
T 1uf1_A           20 DEKKVNLVLGDGRSLGLTIRGGAEY---GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-R   94 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEECCTTT---TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-S
T ss_pred             cEEEEEEEECCCCccCEEEECcccC---CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-C
Confidence            4566777666567899999986432   2479999999999999999 999999999999999999999999988775 6


Q ss_pred             EEEEEEEecCcc
Q psy2533         170 IVTLEIAKQGAI  181 (684)
Q Consensus       170 ~V~LvV~R~~~~  181 (684)
                      .+.|+|.|....
T Consensus        95 ~v~l~v~R~g~~  106 (128)
T 1uf1_A           95 HLILTVKDVGRL  106 (128)
T ss_dssp             EEEEEEECCSCC
T ss_pred             eEEEEEEECCcc
Confidence            899999997754

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=7.4e-11  Score=107.76  Aligned_cols=89  Identities=21%  Similarity=0.335  Sum_probs=72.9

Q ss_pred             CceEEEEEecCCCcccEEEEecc-----------------------CCC--CCcccEEEEEecCCChhcccCccccCCee
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEE-----------------------GAG--QDRLGIYIKSVVKGGAADANGRLQAGDQL  144 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~-----------------------~~~--~~~~gIfIs~V~pGGpA~r~GrLqvGDrI  144 (684)
                      ..++|.|.| ...||||+|.+..                       ...  ....+++|..|.+++||+++| |++||+|
T Consensus         8 ~~r~v~l~r-~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I   85 (126)
T 2yuy_A            8 GPKTVTLKR-TSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRI   85 (126)
T ss_dssp             SCCCEEEEC-CSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCC
T ss_pred             CCEEEEEEE-CCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEE
Confidence            345677765 4578999998521                       000  012469999999999999999 9999999


Q ss_pred             eecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533         145 LKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       145 LaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~  180 (684)
                      ++|||.++.+++|.+++.+|+..+..|.|+|.|...
T Consensus        86 ~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           86 IKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             CEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             EEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            999999999999999999999999999999988653

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.06  E-value=5.9e-10  Score=102.08  Aligned_cols=79  Identities=25%  Similarity=0.435  Sum_probs=69.4

Q ss_pred             EecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEE
Q psy2533          97 RDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLE  174 (684)
Q Consensus        97 ~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~Lv  174 (684)
                      ...+..+|||.+.++.+     .+++|..|.|+|||+++| |++||+|++|||.++.++++.+++.+|+.  .+..|.|+
T Consensus        34 ~~~~~~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~  107 (124)
T 3tsv_A           34 KFRKGDSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL  107 (124)
T ss_dssp             EEECSSCCCEEEEECTT-----SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEE
T ss_pred             EcCCCCceeEEEecCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence            33456899999998644     479999999999999999 99999999999999999999999998884  67899999


Q ss_pred             EEecCcc
Q psy2533         175 IAKQGAI  181 (684)
Q Consensus       175 V~R~~~~  181 (684)
                      |.|....
T Consensus       108 v~R~~~~  114 (124)
T 3tsv_A          108 AQKKKDV  114 (124)
T ss_dssp             EEECHHH
T ss_pred             EEECCch
Confidence            9997654

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.06  E-value=1.5e-09  Score=94.84  Aligned_cols=81  Identities=15%  Similarity=0.257  Sum_probs=67.0

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--  167 (684)
                      ....+.+.+ ...||||+|.+..      .+++|..|.++  |+..| |++||+|++|||.++.+++|.+++.+|+..  
T Consensus        10 ~~~~v~l~~-~~~g~G~~i~~~~------~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~   79 (96)
T 1ujv_A           10 ELMTLTIVK-GAQGFGFTIADSP------TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCPI   79 (96)
T ss_dssp             CCEEEEEEC-CSSSSSEEEEEET------TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSCT
T ss_pred             eEEEEEEEe-CCCceeEEEEcCC------CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            345566654 5689999997532      26999999983  66777 999999999999999999999999999984  


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus        80 g~~v~l~v~R~g~   92 (96)
T 1ujv_A           80 GSETSLIIHRGSG   92 (96)
T ss_dssp             TSEEEEEEECCSS
T ss_pred             CCEEEEEEEECCC
Confidence            6899999998753

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.05  E-value=7.3e-10  Score=91.95  Aligned_cols=74  Identities=22%  Similarity=0.380  Sum_probs=65.3

Q ss_pred             EEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEE
Q psy2533          96 VRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI  175 (684)
Q Consensus        96 v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV  175 (684)
                      +.......|||.+.+         +++|..|.++|||+++|+|++||+|++|||.++.++++.++..+|+..+..+.|+|
T Consensus         7 ~~~~~~~~~g~~~~~---------gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v   77 (81)
T 2rcz_A            7 VKSRKNEEYGLRLAS---------HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV   77 (81)
T ss_dssp             ECCSTTCCCCEEEEE---------EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEE
T ss_pred             EECCCCCCCCEEEeC---------CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEE
Confidence            344567789998862         69999999999999999999999999999999999999999999998878899999


Q ss_pred             Eec
Q psy2533         176 AKQ  178 (684)
Q Consensus       176 ~R~  178 (684)
                      .|.
T Consensus        78 ~R~   80 (81)
T 2rcz_A           78 QRD   80 (81)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            774

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.05  E-value=3.1e-10  Score=99.50  Aligned_cols=74  Identities=15%  Similarity=0.167  Sum_probs=66.2

Q ss_pred             ecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEe
Q psy2533          98 DMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  177 (684)
Q Consensus        98 k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R  177 (684)
                      .+...+|||.+.+.       .+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+|+..+..|.|+|.|
T Consensus        22 ~~~~~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R   93 (100)
T 1whd_A           22 RRGKDGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR   93 (100)
T ss_dssp             ECCSSSSSCBCCCS-------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEE
T ss_pred             ECCCCeeeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            34567899998753       368999999999999999 9999999999999999999999999999888889999988


Q ss_pred             cC
Q psy2533         178 QG  179 (684)
Q Consensus       178 ~~  179 (684)
                      ..
T Consensus        94 ~~   95 (100)
T 1whd_A           94 VS   95 (100)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.05  E-value=8.8e-10  Score=97.39  Aligned_cols=85  Identities=21%  Similarity=0.313  Sum_probs=68.3

Q ss_pred             CceEEEEEecCC--CcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          90 SMKSHSVRDMLR--QEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        90 ~~~~V~v~k~~~--~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ..+.+.+.|...  .+|||+|.++...  +..+++|..|.++|||+++| |++||+|++|||.++.++++.++..++++ 
T Consensus         6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~--~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~-   81 (94)
T 3kzd_A            6 VTHSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ-   81 (94)
T ss_dssp             EEEEEEEEC------CCSEEEEEECSS--SSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS-
T ss_pred             ceeEEEEEeCCCCcCCcCEEEEecCCC--CcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-
Confidence            356677777653  4899999875432  23589999999999999999 99999999999999999999999999974 


Q ss_pred             CCEEEEEEEecC
Q psy2533         168 GPIVTLEIAKQG  179 (684)
Q Consensus       168 g~~V~LvV~R~~  179 (684)
                       ..++|+|..-+
T Consensus        82 -~~l~ltV~~~p   92 (94)
T 3kzd_A           82 -PSLGLLVRTYP   92 (94)
T ss_dssp             -SEEEEEEEECC
T ss_pred             -CeEEEEEEecC
Confidence             56888886643

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=4.2e-10  Score=102.14  Aligned_cols=87  Identities=20%  Similarity=0.287  Sum_probs=72.7

Q ss_pred             CceEEEEEecCCC--cccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          90 SMKSHSVRDMLRQ--EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        90 ~~~~V~v~k~~~~--GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ..+.+.+.+....  +|||+|.+....  +..+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+|+..
T Consensus        15 ~~~~v~l~k~~~~~~~~G~~v~~~~~~--~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   91 (114)
T 2d8i_A           15 VTQSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP   91 (114)
T ss_dssp             EEEEEEEECSCTTTCCCCCEEEEEEET--TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTSS
T ss_pred             ceEEEEEEeCCCCccccCEEEEecCcC--CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence            4567777777664  799999875432  12479999999999999999 999999999999999999999999999853


Q ss_pred             CCEEEEEEEecCcc
Q psy2533         168 GPIVTLEIAKQGAI  181 (684)
Q Consensus       168 g~~V~LvV~R~~~~  181 (684)
                        .+.|+|.|.+..
T Consensus        92 --~v~l~v~R~p~~  103 (114)
T 2d8i_A           92 --SLGLLVRTYPEL  103 (114)
T ss_dssp             --EEEEEEEECCCS
T ss_pred             --cEEEEEEECCCC
Confidence              899999987643

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.04  E-value=6.2e-10  Score=101.31  Aligned_cols=89  Identities=21%  Similarity=0.256  Sum_probs=76.4

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-  167 (684)
                      ...+.|.+.+....+|||.+.++.+    ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+|+.. 
T Consensus         7 ~~~~~v~l~~~~~~glG~~~~~~~~----~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   82 (127)
T 1b8q_A            7 PNVISVRLFKRKVGGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA   82 (127)
T ss_dssp             CCSEEEEEECTTTSCCSCCEEECTT----SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCC
T ss_pred             CceEEEEEEeCCCCcEeEEEEecCC----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3466788887777899999987543    34799999999999999994499999999999999999999999999875 


Q ss_pred             CCEEEEEEEecCcc
Q psy2533         168 GPIVTLEIAKQGAI  181 (684)
Q Consensus       168 g~~V~LvV~R~~~~  181 (684)
                      +..+.|+|.|....
T Consensus        83 g~~v~l~v~R~g~~   96 (127)
T 1b8q_A           83 SETHVVLILRGPEG   96 (127)
T ss_dssp             SSCEEEEEECCCCS
T ss_pred             CCeEEEEEEeCCce
Confidence            57899999998654

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.03  E-value=4.7e-10  Score=101.10  Aligned_cols=81  Identities=10%  Similarity=0.068  Sum_probs=70.2

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..++|.+.| ...+|||.+.+.       .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+..++
T Consensus        23 ~~r~v~l~k-~~~~~G~~l~~~-------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~   93 (109)
T 2vsv_A           23 MPRSIRFTA-EEGDLGFTLRGN-------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGE   93 (109)
T ss_dssp             SCEEEEECC-GGGCCCEEEESS-------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CCEEEEEEe-CCCceeEEEeCC-------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            456777766 568999999753       368999999999999999 99999999999999999999999999998876


Q ss_pred             E-EEEEEEecC
Q psy2533         170 I-VTLEIAKQG  179 (684)
Q Consensus       170 ~-V~LvV~R~~  179 (684)
                      . |.|+|.|..
T Consensus        94 ~~v~l~V~~~~  104 (109)
T 2vsv_A           94 DEIEMKVVSLL  104 (109)
T ss_dssp             SCEEEEEESCC
T ss_pred             CeEEEEEEECC
Confidence            5 999998764

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.01  E-value=1.1e-09  Score=93.35  Aligned_cols=80  Identities=15%  Similarity=0.267  Sum_probs=67.1

Q ss_pred             EEEEEecCCC--cccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CC
Q psy2533          93 SHSVRDMLRQ--EAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TG  168 (684)
Q Consensus        93 ~V~v~k~~~~--GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg  168 (684)
                      .+.+.+.++.  +|||.+...      ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+|+.  .+
T Consensus         6 ~~~~~~~~~~~~~lG~~~~~~------~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g   78 (90)
T 2eaq_A            6 RISINQTPGKSLDFGFTIKWD------IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQET   78 (90)
T ss_dssp             EEEEECCTTCSSCCSEEEEEE------TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCcccEEEEec------CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCC
Confidence            4555555544  799998743      2379999999999999999 99999999999999988899999999985  47


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..|.|+|.|..
T Consensus        79 ~~v~l~v~R~g   89 (90)
T 2eaq_A           79 GHLVMDVRRYG   89 (90)
T ss_dssp             TEEEEEEEEEC
T ss_pred             CEEEEEEEeCC
Confidence            89999998864

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.99  E-value=1.9e-09  Score=92.10  Aligned_cols=79  Identities=18%  Similarity=0.308  Sum_probs=66.5

Q ss_pred             EEEEEe-cCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          93 SHSVRD-MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        93 ~V~v~k-~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      .+.+.. .....|||.+.         .+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+|+..+..+
T Consensus         5 ~v~~~~~~~~~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v   75 (92)
T 3cyy_A            5 KVTLVKSAKNEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKL   75 (92)
T ss_dssp             EEEEECSSTTSCCCEEEE---------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             EEEEEeCCCCCCCCEEEe---------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence            344443 34568999886         26999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEEecCc
Q psy2533         172 TLEIAKQGA  180 (684)
Q Consensus       172 ~LvV~R~~~  180 (684)
                      .|+|.|...
T Consensus        76 ~l~v~r~g~   84 (92)
T 3cyy_A           76 KMVVQRDER   84 (92)
T ss_dssp             EEEEEC---
T ss_pred             EEEEEeCCc
Confidence            999988764

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.98  E-value=1e-10  Score=128.54  Aligned_cols=153  Identities=17%  Similarity=0.275  Sum_probs=52.8

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCccccccccccCCCCCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYHGLATLLSQPSPVM  196 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~~~~~stl~s~psP~~  196 (684)
                      .|++|..|.+++||+++| |++||+|++|||..+.+.  .+...+|..  .+..|.|+|.|.........++...  +..
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~--~~~  360 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQS--SQN  360 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCEEECCCC---------
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEecC--CCc
Confidence            489999999999999999 999999999999999886  566666664  5788999999876432211111000  000


Q ss_pred             ccCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcE
Q psy2533         197 TRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERF  276 (684)
Q Consensus       197 ~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIF  276 (684)
                                ...    .    ...  ...-+|+.+.            ++                      ....|++
T Consensus       361 ----------~~~----~----~~~--~~~~~G~~l~------------~~----------------------~~~~gv~  386 (448)
T 1ky9_A          361 ----------QVD----S----SSI--FNGIEGAEMS------------NK----------------------GKDQGVV  386 (448)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------ccc----c----ccc--cccccceEee------------cc----------------------CCCCeEE
Confidence                      000    0    000  0000122211            00                      0124677


Q ss_pred             EEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         277 YQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       277 V~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      |..|.  ++|++.| |++||+|++|||+.+.+  ..+...+|+..+..|.|.|.|.+..
T Consensus       387 V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~--~~~l~~~l~~~~~~v~l~v~R~g~~  442 (448)
T 1ky9_A          387 VNNVKTGTPAAQIG-LKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGDST  442 (448)
T ss_dssp             -----------------------------------------------------------
T ss_pred             EEEecCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCeEEEEEEECCEE
Confidence            87776  5677766 99999999999999985  5677888887667899999987643

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.98  E-value=1.1e-09  Score=121.24  Aligned_cols=83  Identities=28%  Similarity=0.486  Sum_probs=73.6

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCC
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGP  169 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~  169 (684)
                      +.|.+.+  +.+|||+|.||.+     .||||..|.+||||+++| |++||+|++|||.++.+++|.+++.+|+.  .+.
T Consensus         3 r~V~l~k--~~~lG~~i~gg~~-----~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~   74 (468)
T 3shw_A            3 KLVKFRK--GDSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE   74 (468)
T ss_dssp             EEEEEEC--CSSCCEEEEEETT-----TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTS
T ss_pred             eEEEEec--CCccceEEEccCc-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCC
Confidence            4566655  4899999998854     479999999999999999 99999999999999999999999999998  789


Q ss_pred             EEEEEEEecCccc
Q psy2533         170 IVTLEIAKQGAIY  182 (684)
Q Consensus       170 ~V~LvV~R~~~~~  182 (684)
                      .|+|+|.|.+..+
T Consensus        75 ~v~L~V~r~g~~~   87 (468)
T 3shw_A           75 EVTILAQKKKDVY   87 (468)
T ss_dssp             EEEEEEEECHHHH
T ss_pred             EEEEEEEECCccc
Confidence            9999999986543

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.97  E-value=1.2e-09  Score=94.12  Aligned_cols=47  Identities=26%  Similarity=0.535  Sum_probs=44.6

Q ss_pred             hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       282 GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      ++|++.| |++||+|++|||+++.+++|++++++|+.++..|+|+|..
T Consensus        34 spA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~p   80 (82)
T 1r6j_A           34 SSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP   80 (82)
T ss_dssp             SHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEe
Confidence            7899998 9999999999999999999999999999999999999974

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.96  E-value=2.9e-09  Score=96.72  Aligned_cols=85  Identities=19%  Similarity=0.294  Sum_probs=71.1

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC-
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-  168 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg-  168 (684)
                      ..+.+.+.+ ...+|||.+.++.+.    .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+|+... 
T Consensus         9 ~~r~v~l~~-~~~g~G~~l~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   82 (128)
T 2kjd_A            9 RPRLCTMKK-GPSGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD   82 (128)
T ss_dssp             CCEEEEEEC-CSSSCCEEEEECSSS----CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred             CcEEEEEec-CCCcccEEEEecCCC----CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            355666665 457899999976542    379999999999999999 9999999999999999999999999999874 


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..+.|+|.|...
T Consensus        83 ~~~~l~v~R~g~   94 (128)
T 2kjd_A           83 ETKLLVVDRETD   94 (128)
T ss_dssp             EEEEEEECHHHH
T ss_pred             CEEEEEEEeCCc
Confidence            456788887654

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.96  E-value=1.2e-09  Score=98.91  Aligned_cols=61  Identities=33%  Similarity=0.467  Sum_probs=56.4

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      +.|+||..|.  |+|++.|+|++||+|++|||+++.++++.+++.+|+..+..|+|.|.|.+.
T Consensus        53 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~  115 (117)
T 2byg_A           53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT  115 (117)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            4589999997  899999999999999999999999999999999999999999999998754

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.94  E-value=3.5e-09  Score=93.55  Aligned_cols=62  Identities=18%  Similarity=0.330  Sum_probs=56.7

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ...|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+|+..+..|.|.|.|+..
T Consensus        39 ~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           39 SSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             CSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCS
T ss_pred             CCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCC
Confidence            35689999997  899999789999999999999999999999999999999999999998754

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.93  E-value=5.3e-10  Score=100.72  Aligned_cols=80  Identities=11%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC-
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-  169 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~-  169 (684)
                      .++|.+.+ ...+|||.+.++       .+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+|+..++ 
T Consensus        16 ~r~v~l~~-~~~~~G~~l~~~-------~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~   86 (111)
T 1vae_A           16 PRGIHFTV-EEGDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             CCCCCEEC-CSSCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             CeEEEEEc-CCCcccEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            35566655 678999999753       268999999999999999 99999999999999999999999999998755 


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .|.|+|.+..
T Consensus        87 ~v~l~V~~~~   96 (111)
T 1vae_A           87 EVEMKVVSLL   96 (111)
T ss_dssp             EECEEEECEE
T ss_pred             eEEEEEEecC
Confidence            5999998764

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.93  E-value=4e-09  Score=102.53  Aligned_cols=82  Identities=28%  Similarity=0.352  Sum_probs=71.8

Q ss_pred             cCCCcccEEEEeccCCCC-CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEe
Q psy2533          99 MLRQEAKLSEMSEEGAGQ-DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  177 (684)
Q Consensus        99 ~~~~GLGfsI~GG~~~~~-~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R  177 (684)
                      +...+|||.|.+|..... ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..+..|.|+|.|
T Consensus       114 ~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R  193 (200)
T 2qt5_A          114 KEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEY  193 (200)
T ss_dssp             CBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEE
T ss_pred             cCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            456789999998754221 1458999999999999999999999999999999999999999999999988899999998


Q ss_pred             cCc
Q psy2533         178 QGA  180 (684)
Q Consensus       178 ~~~  180 (684)
                      ...
T Consensus       194 ~~~  196 (200)
T 2qt5_A          194 DVS  196 (200)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            754

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.92  E-value=2.5e-09  Score=94.92  Aligned_cols=61  Identities=33%  Similarity=0.488  Sum_probs=56.7

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      +.|+||..|.  ++|++.|+|++||+|++|||.++.++++.+++.+++..+..|.|.|.|++.
T Consensus        31 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   93 (106)
T 4amh_A           31 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGS   93 (106)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECCSS
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence            4589999997  799999999999999999999999999999999999999999999999764

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.92  E-value=3e-09  Score=92.92  Aligned_cols=62  Identities=26%  Similarity=0.441  Sum_probs=57.0

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|+||..|.  ++|++.|.|++||+|++|||.++.++++.+++.+++..+..|.|.|.|.+..
T Consensus        33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   96 (102)
T 2i1n_A           33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPP   96 (102)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            4689999997  7999999899999999999999999999999999999999999999997643

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.92  E-value=2.4e-09  Score=98.47  Aligned_cols=60  Identities=20%  Similarity=0.283  Sum_probs=53.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCC-eEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~-~VtL~V~R~~~  332 (684)
                      .++||..|.  ++|+++|+|++||+|++|||+++.+++|++|+.+|+.++. .|.|+|.|...
T Consensus        57 ~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~  119 (130)
T 1i16_A           57 KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             CCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCCC
Confidence            468999997  7899998899999999999999999999999999999865 59999988743

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.92  E-value=1.7e-09  Score=104.63  Aligned_cols=59  Identities=36%  Similarity=0.477  Sum_probs=55.4

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      +.|+||..|.  ++|+++|+|++||+|++|||+++.+++|.+++.+|+.++..|+|+|.|.
T Consensus       110 ~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~V~R~  170 (170)
T 3egg_C          110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE  170 (170)
T ss_dssp             SBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            4689999997  8999999999999999999999999999999999999999999999883

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=98.91  E-value=2.6e-09  Score=94.15  Aligned_cols=63  Identities=33%  Similarity=0.492  Sum_probs=56.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      +.|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+++..+..|.|.|.|.+...
T Consensus        32 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~   96 (105)
T 2awx_A           32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY   96 (105)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEEECCCC--
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCCCC
Confidence            4589999997  89999999999999999999999999999999999999999999999977544

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.91  E-value=3e-09  Score=91.29  Aligned_cols=60  Identities=33%  Similarity=0.511  Sum_probs=54.8

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ..|+||..|.  ++|++.|.|++||+|++|||+++.++++.+++.+++..+..|.|.|.|.+
T Consensus        32 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~g   93 (94)
T 2fe5_A           32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG   93 (94)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            4589999997  78998888999999999999999999999999999988889999998864

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.90  E-value=3.8e-09  Score=114.44  Aligned_cols=84  Identities=29%  Similarity=0.497  Sum_probs=72.5

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TG  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg  168 (684)
                      .+.|.+.+  +.+|||+|.||.+     .||+|..|.+||||+++| |++||+|++|||.++.++++.+++.+|+.  .+
T Consensus        10 ~~~v~~~k--~~~lG~~i~gg~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g   81 (391)
T 3tsz_A           10 MKLVKFRK--GDSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKG   81 (391)
T ss_dssp             EEEEEEEC--CSSCCEEEEEETT-----TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTT
T ss_pred             cEEEEeec--CCceeEEEEecCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCC
Confidence            44455544  4579999998754     489999999999999999 99999999999999999999999999995  78


Q ss_pred             CEEEEEEEecCccc
Q psy2533         169 PIVTLEIAKQGAIY  182 (684)
Q Consensus       169 ~~V~LvV~R~~~~~  182 (684)
                      ..|.|+|.|....+
T Consensus        82 ~~v~l~v~r~~~~~   95 (391)
T 3tsz_A           82 EEVTILAQKKKDVY   95 (391)
T ss_dssp             SEEEEEEEECHHHH
T ss_pred             CeEEEEEeeCCccc
Confidence            89999999986543

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.90  E-value=2.3e-09  Score=97.80  Aligned_cols=79  Identities=20%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecchhhhhcCCCCCCCEE
Q psy2533         217 SSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLSVYRNQNGRLQAGDQL  296 (684)
Q Consensus       217 ~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~GaAardGrLr~GDqI  296 (684)
                      ..+.+.+...||||++...                                    ..|.||..|.- ++++++|++||+|
T Consensus        14 ~~V~L~Kg~~G~GFsI~~~------------------------------------~~g~~V~~I~~-~~~~aGL~~GD~I   56 (113)
T 3soe_A           14 VTIPLIKGPKGFGFAIADS------------------------------------PTGQKVKMILD-SQWCQGLQKGDII   56 (113)
T ss_dssp             EEEEEECBTTBSSEEEEEE------------------------------------TTEEEEEEESC-GGGSTTCCTTCEE
T ss_pred             EEEEEEECCCcccEEEeCC------------------------------------CCCcEEEEecC-hHHhCCCCCCCEE
Confidence            4567888899999998411                                    01345555553 3567889999999


Q ss_pred             EEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCc
Q psy2533         297 LKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA  332 (684)
Q Consensus       297 L~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~  332 (684)
                      ++|||+++.+++|.+++.+|+.+  +..|+|+|.|.+.
T Consensus        57 l~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~   94 (113)
T 3soe_A           57 KEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP   94 (113)
T ss_dssp             EEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred             EEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence            99999999999999999999986  6699999999764

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.88  E-value=3e-09  Score=93.72  Aligned_cols=65  Identities=51%  Similarity=0.731  Sum_probs=58.9

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHG  336 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~~  336 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+++..+..|.|.|.|.+..+..
T Consensus        37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~  103 (106)
T 3axa_A           37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRRE  103 (106)
T ss_dssp             SEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCSSCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCccccc
Confidence            4589999997  7999999999999999999999999999999999999999999999998766543

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.87  E-value=5.7e-09  Score=91.01  Aligned_cols=61  Identities=26%  Similarity=0.454  Sum_probs=55.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+.+.++++.+++.+++..+..|.|.|.|.+.
T Consensus        36 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   98 (101)
T 2jik_A           36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE   98 (101)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEEEEEESC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            4588999997  788888889999999999999999999999999999888999999988653

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=98.87  E-value=7.6e-09  Score=89.27  Aligned_cols=60  Identities=32%  Similarity=0.474  Sum_probs=54.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+++..+..|.|.|.|.+
T Consensus        32 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~   93 (96)
T 1d5g_A           32 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ   93 (96)
T ss_dssp             SSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEECCS
T ss_pred             cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            3578999997  78888888999999999999999999999999999998899999998864

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.86  E-value=2.6e-09  Score=94.78  Aligned_cols=61  Identities=23%  Similarity=0.257  Sum_probs=55.1

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~  331 (684)
                      .+.|+||..|.  ++|++.|+|++||+|++|||+++.++++++++.+|+.. +..|+|+|.|+.
T Consensus        42 ~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~  105 (108)
T 2d92_A           42 TRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP  105 (108)
T ss_dssp             TCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            34689999997  89999999999999999999999999999999999996 568999999864

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.86  E-value=7.9e-09  Score=94.08  Aligned_cols=88  Identities=16%  Similarity=0.243  Sum_probs=68.0

Q ss_pred             eEEEEEe---cCCCcccEEEEeccCCCCCcccEEEEEecC--CChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          92 KSHSVRD---MLRQEAKLSEMSEEGAGQDRLGIYIKSVVK--GGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        92 ~~V~v~k---~~~~GLGfsI~GG~~~~~~~~gIfIs~V~p--GGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      .+|.+.+   ...+.+||.+...........+++|..|.+  ++||+++| |++||+|++|||..+.+++|.++..+|+.
T Consensus        14 ~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~   92 (118)
T 2yub_A           14 YSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQ   92 (118)
T ss_dssp             CEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHC
T ss_pred             ceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHh
Confidence            3445444   233456666653322112235899999999  99999999 99999999999999999999999999998


Q ss_pred             CCCEEEEEEEecCc
Q psy2533         167 TGPIVTLEIAKQGA  180 (684)
Q Consensus       167 sg~~V~LvV~R~~~  180 (684)
                      .+..|.|+|.|...
T Consensus        93 ~g~~v~l~v~R~g~  106 (118)
T 2yub_A           93 TSQTLQLLIEHDPV  106 (118)
T ss_dssp             CSSCEEEEEEECSS
T ss_pred             CCCEEEEEEEECCE
Confidence            77789999998764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.85  E-value=5.3e-09  Score=90.02  Aligned_cols=59  Identities=17%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .++||..|.  ++|++.|+|++||+|++|||.++.++++.+++.+|+..+..|+|.|.+..
T Consensus        28 ~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~   88 (93)
T 3o46_A           28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGS   88 (93)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEEEECC-
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            468899887  79999999999999999999999999999999999999889999998753

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.85  E-value=6e-09  Score=92.81  Aligned_cols=63  Identities=33%  Similarity=0.405  Sum_probs=57.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||.++.++++.+++.+++..+..|+|.|.|.+...
T Consensus        34 ~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~   98 (113)
T 2g5m_B           34 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGE   98 (113)
T ss_dssp             CEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEEEEECCCCT
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCCC
Confidence            4689999997  89999999999999999999999999999999999999999999999986543

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.84  E-value=3.1e-09  Score=93.91  Aligned_cols=61  Identities=34%  Similarity=0.461  Sum_probs=56.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      +.|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+++..+..|+|.|.|...
T Consensus        39 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKP  101 (107)
T ss_dssp             EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEECC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Confidence            4689999997  899999999999999999999999999999999999999999999998754

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.84  E-value=2.3e-08  Score=90.75  Aligned_cols=62  Identities=15%  Similarity=0.240  Sum_probs=55.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      .|+||..|.  ++|++.|.|++||+|++|||+.+.++++.+++.+|+.  .+..|+|.|.|.....
T Consensus        44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~  109 (123)
T 1ueq_A           44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLP  109 (123)
T ss_dssp             CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCC
Confidence            468999987  7899888899999999999999999999999999998  4689999999986443

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=98.83  E-value=5.3e-09  Score=89.82  Aligned_cols=59  Identities=19%  Similarity=0.268  Sum_probs=53.3

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ++||..|.  ++|+++++|++||+|++|||+++.++++++++.+|+..+..|+|.|.|++.
T Consensus        26 ~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~   86 (88)
T 1kwa_A           26 HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR   86 (88)
T ss_dssp             GEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEECCcC
Confidence            57888887  788888899999999999999999999999999999987799999988754

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.83  E-value=9.8e-09  Score=90.41  Aligned_cols=61  Identities=21%  Similarity=0.454  Sum_probs=56.2

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      +.|+||..|.  ++|++.|.|++||+|++|||+++.++++.+++.+|+..+..|.|.|.|...
T Consensus        37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   99 (105)
T 1wha_A           37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG   99 (105)
T ss_dssp             CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            4689999997  799999889999999999999999999999999999888999999999753

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.83  E-value=7.7e-09  Score=92.41  Aligned_cols=60  Identities=23%  Similarity=0.468  Sum_probs=54.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC----CeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG----PIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg----~~VtL~V~R~~~  332 (684)
                      .++||..|.  ++|+++|+|++||+|++|||+++.+++|++++.+|+.+.    ..++|.|.|.+.
T Consensus        41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence            478999997  899999999999999999999999999999999999876    579999988653

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.82  E-value=4e-09  Score=95.52  Aligned_cols=60  Identities=35%  Similarity=0.498  Sum_probs=55.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|+||..|.  |+|++.|+|++||+|++|||+++.++++.+++.+|+..+..|+|.|.|.+.
T Consensus        53 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~  114 (117)
T 2fne_A           53 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE  114 (117)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECSC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            478999997  899999999999999999999999999999999999988899999999764

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.82  E-value=1.3e-08  Score=92.54  Aligned_cols=78  Identities=23%  Similarity=0.422  Sum_probs=65.5

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEecC
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQG  179 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~~  179 (684)
                      ..+|||.+....... ...+++|..|.+++||+++|+|++||+|++|||.++.+  +.++..+|+.. +..|.|+|.|..
T Consensus        31 ~~~lG~~~~~~~~~~-~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g  107 (124)
T 1wh1_A           31 QDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIARPE  107 (124)
T ss_dssp             TCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEEECS
T ss_pred             CCcccEEEEecCCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCEEEEEEEECC
Confidence            458999998754321 13589999999999999999999999999999999974  88999999875 678999999986


Q ss_pred             cc
Q psy2533         180 AI  181 (684)
Q Consensus       180 ~~  181 (684)
                      ..
T Consensus       108 ~~  109 (124)
T 1wh1_A          108 LQ  109 (124)
T ss_dssp             SC
T ss_pred             EE
Confidence            43

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.82  E-value=2.4e-08  Score=89.13  Aligned_cols=64  Identities=30%  Similarity=0.370  Sum_probs=56.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHG  336 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~~  336 (684)
                      .|+||..|.  ++|++.|+|++||+|++|||+.+.++++.+++.+|+..+..|+|.|.|.+..+..
T Consensus        43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~~  108 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRD  108 (116)
T ss_dssp             SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEEEECCSSCCCS
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCccccc
Confidence            367888886  7889988899999999999999999999999999998889999999997765543

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.82  E-value=8.5e-09  Score=90.63  Aligned_cols=60  Identities=22%  Similarity=0.351  Sum_probs=54.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~  332 (684)
                      .++||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+|+..  +..|+|.|.|...
T Consensus        34 ~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   97 (103)
T 1uep_A           34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence            467888886  78999999999999999999999999999999999987  7899999998753

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.82  E-value=1.8e-08  Score=90.33  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             EEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc---CCCEEE
Q psy2533          96 VRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR---TGPIVT  172 (684)
Q Consensus        96 v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~---sg~~V~  172 (684)
                      +......++||.+....      .+.+|..|.+|+||+++| |++||+|++|||.++...++++++.+++.   .+..|.
T Consensus        22 ~l~~~~~g~G~~l~~~~------~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~   94 (101)
T 3qik_A           22 LILPQEEDYGFDIEEKN------KAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLR   94 (101)
T ss_dssp             EECCCSSSSSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEeCCCcccEEEEccC------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEE
Confidence            34456789999998532      368999999999999999 99999999999999988999999999987   588999


Q ss_pred             EEEEec
Q psy2533         173 LEIAKQ  178 (684)
Q Consensus       173 LvV~R~  178 (684)
                      |.|+..
T Consensus        95 LLV~~~  100 (101)
T 3qik_A           95 LLVATK  100 (101)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            998754

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.81  E-value=4.3e-09  Score=105.61  Aligned_cols=85  Identities=19%  Similarity=0.303  Sum_probs=72.2

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..+.|.+.+ ...||||.|.++.+    ..|++|..|.+||||+++| |++||+|++|||..+.++++.+++.+|+..+.
T Consensus         9 ~~r~v~l~k-~~~glG~~l~~~~~----~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~   82 (216)
T 2krg_A            9 RPRLCTMKK-GPSGYGFNLHSDKS----KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD   82 (216)
T ss_dssp             CCEEEEEEC-CSSSSCEEECCCSS----SCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCS
T ss_pred             ceEEEEEEe-CCCCceEEEEecCC----CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCC
Confidence            456666655 55789999987653    2379999999999999999 99999999999999999999999999988788


Q ss_pred             EE-EEEEEecCc
Q psy2533         170 IV-TLEIAKQGA  180 (684)
Q Consensus       170 ~V-~LvV~R~~~  180 (684)
                      .| .|+|.|...
T Consensus        83 ~v~~l~V~R~g~   94 (216)
T 2krg_A           83 ETKLLVVDRETD   94 (216)
T ss_dssp             EEEEEECCHHHH
T ss_pred             eEEEEEEEECCE
Confidence            88 888877654

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.81  E-value=1.2e-08  Score=87.19  Aligned_cols=58  Identities=19%  Similarity=0.290  Sum_probs=51.4

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+++.++++.+++.+|+..+..+.+.+.++.
T Consensus        27 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~   86 (91)
T 1g9o_A           27 LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE   86 (91)
T ss_dssp             SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred             CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCC
Confidence            478888887  7888877 999999999999999999999999999998888888777764

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.1e-08  Score=87.51  Aligned_cols=59  Identities=31%  Similarity=0.392  Sum_probs=53.7

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .++||..|.  ++|++.|+|++||+|++|||+.+.++++.+++.+++..+..|.|.|.|..
T Consensus        30 ~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~   90 (93)
T 2dkr_A           30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGP   90 (93)
T ss_dssp             CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEeCC
Confidence            478898887  78898888999999999999999999999999999998889999998764

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.80  E-value=1.1e-08  Score=87.41  Aligned_cols=59  Identities=19%  Similarity=0.387  Sum_probs=53.6

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|++|..|.  ++|++.| |++||+|++|||.++.+++|.++..+|+..+..|.|.|.|++.
T Consensus        28 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~   88 (90)
T 2he4_A           28 PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST   88 (90)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCC
T ss_pred             CCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCC
Confidence            478888887  7888887 9999999999999999999999999999988999999998764

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.80  E-value=1.3e-08  Score=90.20  Aligned_cols=63  Identities=29%  Similarity=0.463  Sum_probs=57.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+.+.++++.+++.+++..+..|.|.|.|.+...
T Consensus        35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~   99 (110)
T 1um1_A           35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVET   99 (110)
T ss_dssp             CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCCHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Confidence            4689999997  79999999999999999999999999999999999999999999999986543

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.80  E-value=2.1e-08  Score=89.97  Aligned_cols=63  Identities=19%  Similarity=0.290  Sum_probs=57.1

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ...|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+|+..+..|+|.|.|....
T Consensus        48 ~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~  112 (117)
T 2ehr_A           48 ELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST  112 (117)
T ss_dssp             CCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEEEECCBSCC
T ss_pred             CcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            35689999997  7899988899999999999999999999999999999999999999887553

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.80  E-value=1.2e-08  Score=90.54  Aligned_cols=61  Identities=30%  Similarity=0.486  Sum_probs=55.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .|+||..|.  ++|++.|+|++||+|++|||+.+.++++.+++.+|+..+..|.|.|.|.+..
T Consensus        38 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~  100 (111)
T 2dlu_A           38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAG  100 (111)
T ss_dssp             SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEEEEESCTT
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCCC
Confidence            478898887  7899988899999999999999999999999999998889999999987654

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.79  E-value=7.3e-09  Score=90.48  Aligned_cols=63  Identities=29%  Similarity=0.346  Sum_probs=56.6

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH  335 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~  335 (684)
                      .|+||..|.  ++|++.|.|++||+|++|||.++.++++.+++.+++..+..|+|.|.|....+.
T Consensus        35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~~   99 (104)
T 3i4w_A           35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS   99 (104)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHHHHH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECcchhh
Confidence            478999987  789998889999999999999999999999999999999999999999765443

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.79  E-value=8.9e-09  Score=88.39  Aligned_cols=60  Identities=17%  Similarity=0.339  Sum_probs=53.7

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      |+||..|.  |+|++.|+|++||+|++|||+++.++++++++.+|+.++..|+|.|.+....
T Consensus        22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~~   83 (88)
T 3e17_A           22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEH   83 (88)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC---
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCCcc
Confidence            68898887  7999999999999999999999999999999999999999999999876543

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.78  E-value=1.2e-08  Score=90.16  Aligned_cols=61  Identities=31%  Similarity=0.472  Sum_probs=56.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+++..+..|+|.|.|.+.
T Consensus        41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEEECCCC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            4689999997  899999999999999999999999999999999999999999999998754

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.78  E-value=1.3e-08  Score=92.55  Aligned_cols=63  Identities=21%  Similarity=0.334  Sum_probs=57.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH  335 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~  335 (684)
                      .|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+++..+..|.|.|.|.+....
T Consensus        51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~  115 (124)
T 2daz_A           51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVN  115 (124)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEEEEECTTHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCccc
Confidence            578999997  799999999999999999999999999999999999999999999999876543

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.78  E-value=1.5e-08  Score=87.65  Aligned_cols=62  Identities=31%  Similarity=0.382  Sum_probs=55.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      .|+||..|.  ++|++.|.|++||+|++|||.++.++++.+++.+++..+..|.|.|.|.+..+
T Consensus        30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~   93 (98)
T 2opg_A           30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPY   93 (98)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEECSSCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCCCCC
Confidence            478999987  78998888999999999999999999999999999988899999999976543

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=2.5e-08  Score=89.92  Aligned_cols=62  Identities=26%  Similarity=0.462  Sum_probs=56.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..++||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+++..+..|.|.|.|....
T Consensus        46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~  109 (120)
T 2eno_A           46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQV  109 (120)
T ss_dssp             CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcC
Confidence            4689999997  7899988899999999999999999999999999998899999999997653

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.77  E-value=2e-08  Score=87.09  Aligned_cols=60  Identities=28%  Similarity=0.410  Sum_probs=54.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .++||..|.  ++|++.|.|++||+|++|||+.+.++++.+++.+|+..+..|.|.|.|.+.
T Consensus        30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   91 (97)
T 1n7e_A           30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD   91 (97)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            468888887  788888889999999999999999999999999999888899999998764

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.77  E-value=9.3e-09  Score=91.09  Aligned_cols=58  Identities=17%  Similarity=0.275  Sum_probs=52.2

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-----CCCeEEEEEEeCC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-----TGPIVTLEIAKQG  331 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-----sg~~VtL~V~R~~  331 (684)
                      ++||..|.  ++|+++|+|++||+|++|||+++.+++|++|+.+|+.     .++.+.|.|.|..
T Consensus        33 ~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           33 LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN   97 (103)
T ss_dssp             SCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred             cEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcc
Confidence            45888886  8999999999999999999999999999999999998     4678999998864

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.77  E-value=1.3e-08  Score=92.54  Aligned_cols=60  Identities=27%  Similarity=0.427  Sum_probs=55.9

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ..|+||..|.  |+|++.|+|++||+|++|||+++.++++.+++.+|+.++..|+|.|.|..
T Consensus        52 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~v~R~~  113 (118)
T 3b76_A           52 DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVK  113 (118)
T ss_dssp             CCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            4689999997  89999999999999999999999999999999999999999999999853

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.77  E-value=1.7e-08  Score=98.00  Aligned_cols=87  Identities=24%  Similarity=0.280  Sum_probs=72.5

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV  171 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V  171 (684)
                      ..+.+.+....+|||.+.+..... ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+|+..+..+
T Consensus       109 ~~v~l~~~~~~~lG~~~~~~~~~~-~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v  187 (196)
T 1p1d_A          109 FHVKLPKKHSVELGITISSPSSRK-PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLV  187 (196)
T ss_dssp             EEEEECCCSSCCCCCEEECSCSSS-TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCE
T ss_pred             EEEEecCCCCCCcCEEEECCCCCC-CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence            345554445668999998753221 1357999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEEecC
Q psy2533         172 TLEIAKQG  179 (684)
Q Consensus       172 ~LvV~R~~  179 (684)
                      .|+|.|..
T Consensus       188 ~l~v~R~~  195 (196)
T 1p1d_A          188 KLKIRKDE  195 (196)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            99998864

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.76  E-value=1.8e-08  Score=84.99  Aligned_cols=57  Identities=19%  Similarity=0.348  Sum_probs=51.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEe
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAK  329 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R  329 (684)
                      .++||..|.  ++|++.|.|++||+|++|||..+.++++.++..+|+..  +..|.|.|.|
T Consensus        25 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             BCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            468888887  78888888999999999999999999999999999986  6889999865

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=98.76  E-value=1.9e-08  Score=86.15  Aligned_cols=58  Identities=22%  Similarity=0.354  Sum_probs=48.5

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      |++|..|.  ++|++.| |++||+|++|||+++.++++.++..+|+..+..|.|.|.|.+.
T Consensus        28 g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~   87 (91)
T 2vsp_A           28 GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKA   87 (91)
T ss_dssp             CCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC---
T ss_pred             CeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCc
Confidence            45666665  6788877 9999999999999999999999999999888899999998764

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.76  E-value=1.9e-08  Score=84.65  Aligned_cols=56  Identities=20%  Similarity=0.262  Sum_probs=47.5

Q ss_pred             cEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         275 RFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       275 IFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ++|..|.  ++|++.| |++||+|++|||..+.+++|.+++.+|+..+..|+|.|.|..
T Consensus        25 ~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   82 (83)
T 2kv8_A           25 CVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGV   82 (83)
T ss_dssp             CBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEECCC
T ss_pred             eEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCC
Confidence            4444554  5677776 999999999999999999999999999988888999998863

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.75  E-value=1.3e-08  Score=87.91  Aligned_cols=61  Identities=26%  Similarity=0.376  Sum_probs=55.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||.++.++++.++..+|+..+..+.|.|.|.+.
T Consensus        31 ~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   93 (97)
T 2jil_A           31 SRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVS   93 (97)
T ss_dssp             CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            4578999987  789998889999999999999999999999999999988999999999764

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.75  E-value=1.1e-08  Score=87.18  Aligned_cols=58  Identities=21%  Similarity=0.462  Sum_probs=52.1

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCC--eEEEEEEeCC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQG  331 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~--~VtL~V~R~~  331 (684)
                      ++||..|.  ++|++.|.|++||+|++|||.++.++++.+++.+|+..+.  .|+|.|.|..
T Consensus        28 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~   89 (90)
T 2q9v_A           28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR   89 (90)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred             CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence            58888887  7999998899999999999999999999999999998754  8999998863

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.75  E-value=2e-08  Score=86.61  Aligned_cols=61  Identities=34%  Similarity=0.471  Sum_probs=56.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .|+||..|.  ++|++.|.|++||+|++|||.++.++++.+++.+++..+..|.|.|.|.+..
T Consensus        29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   91 (95)
T 2vwr_A           29 PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKP   91 (95)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEESCS
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCcC
Confidence            479999997  8999999999999999999999999999999999999999999999997643

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=2.1e-08  Score=87.80  Aligned_cols=61  Identities=28%  Similarity=0.380  Sum_probs=54.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .++||..|.  ++|++.|.|++||+|++|||+.+.++++.+++.+|+..+..|.|.|.|.+..
T Consensus        38 ~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~  100 (104)
T 2djt_A           38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSG  100 (104)
T ss_dssp             CCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEEECCCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            468898887  7888888899999999999999999999999999998889999999887643

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.74  E-value=1.7e-08  Score=91.83  Aligned_cols=61  Identities=20%  Similarity=0.365  Sum_probs=56.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .++||..|.  |+|++.|+|++||+|++|||+++.++++.+++.+|+.++..|+|.|.|.+..
T Consensus        53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~  115 (120)
T 2iwo_A           53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDV  115 (120)
T ss_dssp             EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEECCTTS
T ss_pred             CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            468999987  7999998899999999999999999999999999999999999999987643

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.74  E-value=2.6e-08  Score=85.23  Aligned_cols=60  Identities=32%  Similarity=0.440  Sum_probs=55.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|+||..|.  ++|++.|.|++||+|++|||+++.++++.++..+++..+..|.|.|.|++.
T Consensus        29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~   90 (92)
T 2qg1_A           29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIST   90 (92)
T ss_dssp             CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcccc
Confidence            478999987  799999999999999999999999999999999999999999999998763

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.74  E-value=1.5e-08  Score=90.61  Aligned_cols=60  Identities=18%  Similarity=0.397  Sum_probs=54.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|++|..|.  ++|++.|.|++||+|++|||+++.++++.+++.+++..+..|+|.|.|.+.
T Consensus        49 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~  110 (112)
T 2r4h_A           49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGET  110 (112)
T ss_dssp             CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            478898887  788888889999999999999999999999999999888999999988653

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=98.74  E-value=2.5e-08  Score=85.54  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=51.2

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      +++|..|.  ++|++.| |++||+|++|||..+.++++.++..+|+..+..+.|.|.|.....
T Consensus        25 ~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~   86 (91)
T 2f5y_A           25 PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQV   86 (91)
T ss_dssp             SCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEECC---
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Confidence            46777776  6888877 999999999999999999999999999988889999999976443

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.74  E-value=3.8e-08  Score=88.11  Aligned_cols=60  Identities=15%  Similarity=0.273  Sum_probs=54.0

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|+||..|.  ++|++.|.|++||+|++|||+.+.++++.+++.+|+..+..|+|.|.|.+.
T Consensus        48 ~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  109 (113)
T 1va8_A           48 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSG  109 (113)
T ss_dssp             SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            468898887  789998866999999999999999999999999999988899999998764

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.73  E-value=1.9e-08  Score=89.54  Aligned_cols=61  Identities=23%  Similarity=0.383  Sum_probs=55.0

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC---CCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT---GPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s---g~~VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+++.+++|++++.+|+.+   +..|+|.|.|+..
T Consensus        32 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             CCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence            4689999997  89999999999999999999999999999999999887   4579999998653

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.73  E-value=2.8e-08  Score=102.63  Aligned_cols=62  Identities=26%  Similarity=0.365  Sum_probs=56.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      .|+||..|.  ++|+++++|++||+|++|||+++.+++|.+++.+|+..+..|+|.|.|.....
T Consensus       103 ~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~~~~~  166 (263)
T 1z87_A          103 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVS  166 (263)
T ss_dssp             EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEEEECCSSSS
T ss_pred             CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEeCcccc
Confidence            478999997  78888888999999999999999999999999999999999999999976543

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.72  E-value=2.7e-08  Score=85.49  Aligned_cols=59  Identities=17%  Similarity=0.334  Sum_probs=52.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .++||..|.  ++|++.| |++||+|++|||..+.+++|.+++.+|+..+..+.+.+.|++.
T Consensus        29 ~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~~~   89 (95)
T 3r68_A           29 KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEL   89 (95)
T ss_dssp             CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEECC-
T ss_pred             CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEECCcc
Confidence            367888887  7888888 9999999999999999999999999999999999999988764

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.72  E-value=2.3e-08  Score=91.16  Aligned_cols=61  Identities=21%  Similarity=0.372  Sum_probs=56.0

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecC-CCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLV-GITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~-g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+++. ++++.+++.+|+..+..|.|.|.|...
T Consensus        53 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~~  116 (128)
T 2db5_A           53 KVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPV  116 (128)
T ss_dssp             CEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence            3578999997  799999999999999999999997 999999999999999999999999754

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.72  E-value=1.9e-08  Score=87.70  Aligned_cols=61  Identities=25%  Similarity=0.396  Sum_probs=54.1

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ++||..|.  ++|++.|.|++||+|++|||+++.++++.+++.+++..+..|.|.|.|.+...
T Consensus        37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~   99 (103)
T 1wfv_A           37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSG   99 (103)
T ss_dssp             EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTCSS
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCC
Confidence            67777776  78888888999999999999999999999999999988899999999876543

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.71  E-value=1.5e-08  Score=92.89  Aligned_cols=61  Identities=30%  Similarity=0.481  Sum_probs=55.7

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-------CCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-------GPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-------g~~VtL~V~R~~~  332 (684)
                      +.++||..|.  ++|+++|+|++||+|++|||+++.+++|.+++.+|+.+       +..|+|.|.|...
T Consensus        54 ~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A           54 DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             EEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence            3578999997  89999999999999999999999999999999999976       7899999999754

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.71  E-value=3.9e-08  Score=87.07  Aligned_cols=63  Identities=33%  Similarity=0.507  Sum_probs=56.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCcccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAIYH  335 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~~~~  335 (684)
                      .|+||..|.  ++|++.|+|++||+|++|||+.+.++++.+++.+|+..  +..|.|.|.|.+..+.
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~  105 (111)
T 2koj_A           39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFH  105 (111)
T ss_dssp             SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCCCC
T ss_pred             cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCcc
Confidence            578999997  78898888999999999999999999999999999985  7899999999875443

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.71  E-value=3.7e-08  Score=87.72  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH  335 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~  335 (684)
                      .|+||..|.  |+|++.|+|++||+|++|||+++.++++.+++.+++..++.|.|.|.|.....+
T Consensus        25 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~   89 (106)
T 2la8_A           25 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSG   89 (106)
T ss_dssp             SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEECCSCSS
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCCC
Confidence            478999987  799999999999999999999999999999999999988899999999754433

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.70  E-value=2.8e-08  Score=89.57  Aligned_cols=60  Identities=23%  Similarity=0.306  Sum_probs=55.4

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ++||..|.  ++|++.|+|++||+|++|||+.+.++++++++.+|+..+..|+|.|.|....
T Consensus        43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~  104 (117)
T 1v62_A           43 VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQS  104 (117)
T ss_dssp             EEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTTB
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCCC
Confidence            58999997  8999999999999999999999999999999999998899999999987643

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.70  E-value=2.8e-08  Score=87.57  Aligned_cols=62  Identities=19%  Similarity=0.289  Sum_probs=54.0

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH  335 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~  335 (684)
                      ++||..|.  ++|+++++|++||+|++|||.++.++++.+++.+|+.++..|+|+|.+.....+
T Consensus        36 ~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~~   99 (103)
T 2dc2_A           36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHH   99 (103)
T ss_dssp             EEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEEEEECC----
T ss_pred             CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCcch
Confidence            67888887  788887789999999999999999999999999999999999999999766543

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.70  E-value=2.2e-08  Score=90.23  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=57.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+++.+++|.+++.+|+..+..|+|.|.|.....
T Consensus        48 ~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~  112 (117)
T 1ujd_A           48 EIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMS  112 (117)
T ss_dssp             CEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCCCC
T ss_pred             CcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEECCccc
Confidence            3578999997  79999999999999999999999999999999999999999999999876544

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=4.7e-08  Score=85.87  Aligned_cols=60  Identities=17%  Similarity=0.336  Sum_probs=53.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+++.++++.+++.+++..+..+.|.|.|++..
T Consensus        32 ~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~   93 (106)
T 2eei_A           32 KGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETD   93 (106)
T ss_dssp             CSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEEECCTTTS
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCchh
Confidence            467888886  7888887 99999999999999999999999999998889999999987643

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.69  E-value=4.2e-08  Score=84.52  Aligned_cols=59  Identities=24%  Similarity=0.337  Sum_probs=53.4

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ...|+||..|.  ++|++  +|++||+|++|||+++.++++.+++.+++..+..|.|.|.|..
T Consensus        33 ~~~gv~V~~V~~~spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           33 DDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV   93 (95)
T ss_dssp             TCCCEEEEEECTTSTTTT--TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred             CCCCEEEEEECCCCchhh--CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEEEEeCC
Confidence            35689999997  78887  6999999999999999999999999999999999999999864

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=98.68  E-value=2.8e-08  Score=85.83  Aligned_cols=60  Identities=28%  Similarity=0.511  Sum_probs=53.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .|++|..|.  ++|++.| |++||+|++|||..+.++++.++..+|+..+..|.|.|.|.+..
T Consensus        30 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~   91 (96)
T 2v90_A           30 PGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD   91 (96)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCCTT
T ss_pred             CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECCCCc
Confidence            478888887  7888877 99999999999999999999999999999889999999997643

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.67  E-value=4.1e-08  Score=86.91  Aligned_cols=64  Identities=30%  Similarity=0.368  Sum_probs=54.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHG  336 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~~  336 (684)
                      .++||..|.  ++|++.|+|++||+|++|||+.+.++++.+++.+++..+..|.|.|.|.+..+..
T Consensus        39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~~~  104 (113)
T 1um7_A           39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSR  104 (113)
T ss_dssp             CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEEEECCHHHHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECcchhhh
Confidence            356666665  6888888899999999999999999999999999998899999999987665543

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.67  E-value=3.4e-08  Score=88.68  Aligned_cols=60  Identities=17%  Similarity=0.323  Sum_probs=53.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|+||..|.  ++|+  ++|++||+|++|||+++.++++.+++.+|+..+..|.|.|.|....
T Consensus        45 ~~gv~V~~V~~~spA~--~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  106 (117)
T 2csj_A           45 ETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV  106 (117)
T ss_dssp             CCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEEEEC
T ss_pred             CCCEEEEEECCCCccc--ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEECCcc
Confidence            4689999997  6664  7799999999999999999999999999999999999999997543

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.66  E-value=3.8e-08  Score=90.73  Aligned_cols=61  Identities=25%  Similarity=0.446  Sum_probs=55.4

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC--CeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg--~~VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+++.+++|++++.+|+.+.  ..|+|+|.|.+.
T Consensus        64 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~  128 (131)
T 1wfg_A           64 RLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP  128 (131)
T ss_dssp             CEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence            4589999997  899999999999999999999999999999999999864  889999998754

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=8.8e-08  Score=87.30  Aligned_cols=61  Identities=20%  Similarity=0.363  Sum_probs=55.2

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .+.+++|..|.  ++|++.| |++||+|++|||+++.++++.+++.+|+..+..|+|.|.|.+.
T Consensus        59 ~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           59 PMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             CCCCCCBCCCCSSSHHHHHT-CCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             CCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            34679999997  7888888 9999999999999999999999999999999999999988754

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.66  E-value=2e-08  Score=89.29  Aligned_cols=61  Identities=31%  Similarity=0.451  Sum_probs=56.0

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ...|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+|+..+..|+|.|.|..
T Consensus        42 ~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           42 TDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             TCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            35689999997  79999999999999999999999999999999999998899999998764

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.66  E-value=6.6e-08  Score=84.64  Aligned_cols=59  Identities=24%  Similarity=0.337  Sum_probs=53.2

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ...|+||..|.  ++|++  +|++||+|++|||+.+.++++.+++.+++..+..|.|.|.|..
T Consensus        41 ~~~gv~V~~V~~~spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           41 DDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             SCCSEECCCBSSSSTTSS--SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred             CCCCEEEEEECCCCchHH--CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEEEEecC
Confidence            35689999987  78887  6999999999999999999999999999999999999999864

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.65  E-value=6.7e-08  Score=84.48  Aligned_cols=60  Identities=18%  Similarity=0.333  Sum_probs=52.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .|++|..|.  ++|++.| |++||+|++|||..+.++++.+++.+|+..+..|.|.|.|++..
T Consensus        30 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~   91 (102)
T 2d90_A           30 KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAE   91 (102)
T ss_dssp             SSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEEECSTTCC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCc
Confidence            467888887  6777777 99999999999999999999999999999899999999887543

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.64  E-value=6.6e-08  Score=84.34  Aligned_cols=58  Identities=14%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             CcEEEecchhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCc
Q psy2533         274 ERFYQNLSVYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~  332 (684)
                      |+||..+.-+| ..++|++||+|++|||+++.+++|.+++.+|+..  +..|.|.|.|.+.
T Consensus        33 Gv~V~~v~~~a-~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           33 GQRVKQILDIQ-GCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG   92 (96)
T ss_dssp             EEEEEEESCGG-GSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred             CEEEEEEeccc-ccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence            57787777334 4677999999999999999999999999999984  6799999998754

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.63  E-value=6.4e-08  Score=82.60  Aligned_cols=58  Identities=28%  Similarity=0.389  Sum_probs=53.0

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .++||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+++..+..|+|.|.|.
T Consensus        30 ~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~v~r~   89 (90)
T 1qav_A           30 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM   89 (90)
T ss_dssp             EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEe
Confidence            468898887  7899987899999999999999999999999999999999999999874

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.63  E-value=7.6e-08  Score=87.36  Aligned_cols=60  Identities=25%  Similarity=0.341  Sum_probs=55.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .++||..|.  ++|++.|+|++||+|++|||.++.+++|.+++.+|+..+..|+|.|.|...
T Consensus        45 ~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  106 (125)
T 3hpk_A           45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQA  106 (125)
T ss_dssp             SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEECS
T ss_pred             CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            578999987  799999999999999999999999999999999999999999999998543

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.63  E-value=4.7e-08  Score=84.92  Aligned_cols=59  Identities=20%  Similarity=0.326  Sum_probs=54.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .|+||..|.  ++|++.|+|++||+|++|||+++.++++.+++.+++..+..|+|.|.|+.
T Consensus        31 ~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   91 (96)
T 2qkv_A           31 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPK   91 (96)
T ss_dssp             SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred             CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeCC
Confidence            468899987  78999888999999999999999999999999999999899999999864

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.62  E-value=1e-07  Score=88.15  Aligned_cols=57  Identities=21%  Similarity=0.284  Sum_probs=51.2

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQ  330 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~  330 (684)
                      +++|..|.  ++|++.|+|++||+|++|||..+.+.++.+++.+|+.  .+..|+|.|.|.
T Consensus        50 ~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           50 YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             EEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             cEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            56777776  7899999999999999999999999999999999987  478999999987

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.62  E-value=5.2e-08  Score=87.44  Aligned_cols=64  Identities=28%  Similarity=0.335  Sum_probs=56.6

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHG  336 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~~  336 (684)
                      .|+||..|.  ++|++.|.|++||+|++|||..+.++++.+++.+++..+..|.|.|.|....+..
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~~~  103 (119)
T 1tp5_A           38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSR  103 (119)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHHHHHT
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCchhcc
Confidence            478888887  7888888899999999999999999999999999999999999999997655543

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.61  E-value=7.5e-08  Score=81.53  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=51.4

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      .++||..|.  ++|+++++|++||+|++|||.++.++++.+++.+++..+..++|.|.+
T Consensus        28 ~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~~   86 (87)
T 4e34_A           28 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY   86 (87)
T ss_dssp             EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            358888887  788887789999999999999999999999999999999999998864

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.61  E-value=6.1e-08  Score=86.78  Aligned_cols=62  Identities=31%  Similarity=0.446  Sum_probs=56.4

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecC-CCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLV-GITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~-g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+++. ++++.+++.+|+..+..|.|.|.|.+..
T Consensus        48 ~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  112 (117)
T 2o2t_A           48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLP  112 (117)
T ss_dssp             CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEEESSCCG
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEeCCcc
Confidence            3578999987  799999999999999999999998 9999999999999999999999997653

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.61  E-value=8.7e-08  Score=84.45  Aligned_cols=61  Identities=23%  Similarity=0.384  Sum_probs=55.8

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|.|++||+|++|||+.+.++++.+++.+|+..+..|.|.|.|.+.
T Consensus        43 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~  105 (108)
T 2jre_A           43 ATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLP  105 (108)
T ss_dssp             CCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEEEEEEECCC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            4589999997  789998889999999999999999999999999999888999999998764

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.60  E-value=7.9e-08  Score=84.26  Aligned_cols=59  Identities=29%  Similarity=0.394  Sum_probs=53.4

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~  331 (684)
                      +++||..|.  ++|+++|+|++||+|++|||+.+.+.++.+++.+|+.  .+..|+|.|.|..
T Consensus        37 ~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~   99 (101)
T 2yt7_A           37 PTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP   99 (101)
T ss_dssp             CCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            468999997  7899989999999999999999999999999999998  6789999998753

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.59  E-value=1.2e-07  Score=86.91  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=54.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~  332 (684)
                      .++||..|.  ++|++.|+|++||+|++|||+.+.+++|.+++.+|+..  +..|+|.|.|...
T Consensus        43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYP  106 (129)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            368898887  79999999999999999999999999999999999997  6789999999764

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.59  E-value=1.9e-07  Score=84.69  Aligned_cols=59  Identities=36%  Similarity=0.502  Sum_probs=53.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~  331 (684)
                      .+++|..|.  ++|++.|+|++||+|++|||+++.++++.+++.+|+..  +..|.|.|.|.+
T Consensus        58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A           58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence            578999997  78888888999999999999999999999999999985  689999999865

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.58  E-value=1.3e-07  Score=81.43  Aligned_cols=57  Identities=18%  Similarity=0.343  Sum_probs=49.9

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      |+||..|.  ++|++.| |++||+|++|||+.+.++++.+++.+++ .+..|+|.|.|...
T Consensus        30 g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~v~R~~~   88 (93)
T 2dls_A           30 IVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLLGSSS   88 (93)
T ss_dssp             SCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEEEECCCC
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEEEEECCC
Confidence            57787776  6788877 9999999999999999999999888887 58999999998754

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.58  E-value=1e-07  Score=82.43  Aligned_cols=60  Identities=20%  Similarity=0.354  Sum_probs=54.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ..|+||..|.  ++|++.|.|++||+|++|||+.+.++++.++..+|+..+..|+|.|.|.+
T Consensus        36 ~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           36 TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD   97 (98)
T ss_dssp             EEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC-
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCC
Confidence            4578999987  78998888999999999999999999999999999998999999999864

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.57  E-value=2e-07  Score=82.01  Aligned_cols=57  Identities=25%  Similarity=0.326  Sum_probs=51.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+.+.++++.+++.+|+. +..++|.|.|..
T Consensus        41 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~v~r~~   99 (104)
T 1wi2_A           41 LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFS   99 (104)
T ss_dssp             CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEEEECCC
T ss_pred             CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEEEEECC
Confidence            478999987  7888877 99999999999999999999999999998 788999998864

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.57  E-value=1.1e-07  Score=87.11  Aligned_cols=60  Identities=17%  Similarity=0.364  Sum_probs=55.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|+||..|.  |+|++.|.|++||+|++|||.++.++++.+++.+|+..+..|+|.|.|.+.
T Consensus        65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  126 (128)
T 1nf3_C           65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ  126 (128)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            579999997  789999889999999999999999999999999999999999999998653

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.55  E-value=1.7e-07  Score=79.66  Aligned_cols=57  Identities=23%  Similarity=0.382  Sum_probs=47.0

Q ss_pred             CCcEEEecc-hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS-VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~-GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~  331 (684)
                      .+++|..+. ++|+  ++|++||+|++|||..+.++++.+++.+|+.  .+..|.|.|.|.+
T Consensus        27 ~~~~v~~v~~spA~--aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   86 (88)
T 3bpu_A           27 GGQRVKQIVDSPRS--RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT   86 (88)
T ss_dssp             SSEEEEECCC--CC--TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred             CcEEEEEecCChhH--hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            356776665 5666  5799999999999999999999999999985  5789999998865

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.55  E-value=2.1e-07  Score=81.39  Aligned_cols=56  Identities=14%  Similarity=0.079  Sum_probs=48.5

Q ss_pred             cEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         275 RFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       275 IFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ++|..|.  ++|++.| |++||+|++|||+.+.++++.+++.+|+..+..|.|.|.|..
T Consensus        38 ~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   95 (100)
T 1whd_A           38 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS   95 (100)
T ss_dssp             CBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEECC
T ss_pred             EEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            4555555  6778776 999999999999999999999999999998888999998864

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.54  E-value=1.9e-07  Score=89.95  Aligned_cols=57  Identities=25%  Similarity=0.358  Sum_probs=52.9

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      .+.|+||..|.  ++|++  +|++||+|++|||+++.+++|.+++.+++..+..|.|.|.|
T Consensus        22 ~~~g~~V~~v~~~spA~~--gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A           22 DDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             TCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCCCEEEEEECCCChHHh--CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            35689999997  78888  59999999999999999999999999999999999999999

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.54  E-value=1.8e-07  Score=81.63  Aligned_cols=61  Identities=25%  Similarity=0.378  Sum_probs=53.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|.|++||+|++|||.++.++++.++..+|+..+..|.|.|.|...
T Consensus        38 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           38 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             ---EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCC
Confidence            4689999997  789988889999999999999999999999999999988899999998653

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.54  E-value=1.6e-07  Score=86.74  Aligned_cols=59  Identities=17%  Similarity=0.366  Sum_probs=54.4

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ..|+||..|.  ++|++.| |++||+|++|||+++.++++.+++.+|+..+..|.|.|.+..
T Consensus        64 ~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~  124 (132)
T 3l4f_D           64 PALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT  124 (132)
T ss_dssp             CCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            4589999998  7888888 999999999999999999999999999999999999998764

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.54  E-value=1.2e-07  Score=85.71  Aligned_cols=58  Identities=17%  Similarity=0.284  Sum_probs=52.5

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC----CCeEEEEEEeCC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT----GPIVTLEIAKQG  331 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s----g~~VtL~V~R~~  331 (684)
                      .+||..|.  ++|++.|+|++||+|++|||+++.+++|.+++.+|+..    +..|+|.|.|..
T Consensus        44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~~  107 (118)
T 1v6b_A           44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP  107 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeCC
Confidence            37888887  79999988999999999999999999999999999875    789999999854

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.53  E-value=7.1e-07  Score=100.51  Aligned_cols=174  Identities=14%  Similarity=0.085  Sum_probs=98.9

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCH--------HHHHHHH--HcCCCEEEEEEEecCccccccccc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQ--------EKAAEYL--VRTGPIVTLEIAKQGAIYHGLATL  188 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh--------~eAV~lL--k~sg~~V~LvV~R~~~~~~~~stl  188 (684)
                      .|++|..|.|+|||++ + |++||.|++|||..+.....        .....++  +..|+.|.|+|.|.+.......++
T Consensus       277 ~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vtl  354 (539)
T 4fln_A          277 EGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVL  354 (539)
T ss_dssp             BCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEEC
T ss_pred             CceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEE
Confidence            4899999999999986 5 99999999999999965432        1112233  356999999999998765554444


Q ss_pred             cCCCCCccccCCCccccccccccccccccccccccCCCCCCCCCCCCC--------CCCCCcccccccccccCCCCCCCC
Q psy2533         189 LSQPSPVMTRGQVKTYESTISVQQRKERSSQNLHDMNNGVGGSHHPAP--------GPGSGMNHHPVVSRQASTPSLPQA  260 (684)
Q Consensus       189 ~s~psP~~~s~~~~~ses~ls~~~~~~~~sv~L~k~s~GlGfSi~~~~--------g~G~Gi~ikpIv~~~~~t~slp~~  260 (684)
                      ...+.-........           .+       ....-.|+.+.+..        ....+...  ......        
T Consensus       355 ~~~~~~~~~~~~~~-----------~p-------~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l--~~~~~~--------  406 (539)
T 4fln_A          355 RPRVHLVPYHIDGG-----------QP-------SYIIVAGLVFTPLSEPLIEEECEDTIGLKL--LTKARY--------  406 (539)
T ss_dssp             BCCCCSSCSCTTSS-----------CC-------CCCCSTTEEEEECCHHHHTTSCSSSSCHHH--HHHHHH--------
T ss_pred             ccCccccccccccC-----------CC-------ccccccceEEeeCCHHHHHhhcccccCcee--eehhhh--------
Confidence            33221111000000           00       00000121111100        00000000  000000        


Q ss_pred             CCCCCCCCCCCCCCcEEEecc-hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCe-EEEEEE
Q psy2533         261 SPYPAPAPAPADPERFYQNLS-VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI-VTLEIA  328 (684)
Q Consensus       261 sl~~gs~~~~~d~GIFV~sI~-GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~-VtL~V~  328 (684)
                          .........|+.|..|. +.++...++++||+|++|||+.+.++  .+..++|+.+.+. +.|.+.
T Consensus       407 ----~~~~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~~  470 (539)
T 4fln_A          407 ----SVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEFE  470 (539)
T ss_dssp             ----CCCSSTTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEET
T ss_pred             ----hhhccCCceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEEC
Confidence                00011234688888887 44444455999999999999999865  5778889887654 555553

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.53  E-value=1.4e-07  Score=84.44  Aligned_cols=62  Identities=21%  Similarity=0.291  Sum_probs=54.7

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH  335 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~  335 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+.+.++++.+++.+++..+..|.|.|.|.+..+.
T Consensus        42 ~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~  105 (117)
T 1uit_A           42 GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQ  105 (117)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCCCC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCchhh
Confidence            478999987  7888887 9999999999999999999999998788888999999999876554

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1.5e-07  Score=81.75  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=48.9

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ++||..|.  ++| . ++|++||+|++|||+.+.++++.+++.+++..+..|.|.|.|..
T Consensus        32 ~~~V~~V~~~spA-~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   89 (96)
T 2edv_A           32 PLTVVAVTAGGSA-H-GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT   89 (96)
T ss_dssp             SCBCCCBCSSSSS-T-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred             CeEEEEECCCCch-h-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            45666665  556 3 88999999999999999999999999999998999999999976

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.52  E-value=2.1e-07  Score=79.68  Aligned_cols=60  Identities=35%  Similarity=0.613  Sum_probs=54.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ..|++|..|.  ++|++.|.|++||+|++|||..+.++++.+++.+++..+..|.|.|.|.+
T Consensus        32 ~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~g   93 (97)
T 2iwn_A           32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG   93 (97)
T ss_dssp             CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred             CCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            4578999987  78888888999999999999999999999999999988899999998864

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.52  E-value=2.6e-07  Score=84.33  Aligned_cols=61  Identities=25%  Similarity=0.378  Sum_probs=55.8

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|.|++||+|++|||+++.++++.+++.+|+..+..|+|.|.|...
T Consensus        58 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A           58 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             CCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            4689999997  789998889999999999999999999999999999988899999988653

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.51  E-value=2.9e-07  Score=78.52  Aligned_cols=57  Identities=18%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+.+.++++.+++.+++..+..|.|.|.|.
T Consensus        32 ~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   90 (91)
T 1m5z_A           32 KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            478999987  7888877 99999999999999999999999999998899999999875

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.51  E-value=1.6e-07  Score=82.82  Aligned_cols=58  Identities=14%  Similarity=0.324  Sum_probs=52.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .|++|..|.  ++|++.|+|++||+|++|||.++.+++++++..+|+..+..|+|.|.+.
T Consensus        36 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~V~~~   95 (97)
T 2ejy_A           36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPN   95 (97)
T ss_dssp             CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            478898887  8999999999999999999999999999999999999888999999754

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.51  E-value=1.9e-07  Score=79.51  Aligned_cols=59  Identities=20%  Similarity=0.274  Sum_probs=52.4

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .+++|..|.  ++|++.| |++||+|++|||+++.++++.+++.+++..+..+.|.|.|.+.
T Consensus        27 ~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   87 (89)
T 2q3g_A           27 VPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAIT   87 (89)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCCC
Confidence            367888887  6788777 9999999999999999999999999999889999999998754

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.51  E-value=1.7e-07  Score=85.45  Aligned_cols=62  Identities=21%  Similarity=0.425  Sum_probs=56.7

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|+||..|.  ++|++.|.|++||+|++|||+++.++++.+++.+|+..+..|.|.|.|.+..
T Consensus        45 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTS  108 (129)
T ss_dssp             CCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEEEEEEEESSS
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            4689999997  7899998899999999999999999999999999999888999999997653

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.50  E-value=2.8e-07  Score=78.15  Aligned_cols=58  Identities=17%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .+++|..|.  ++|++.| |++||+|++|||..+.++++.++..+++..+..|.|.|.|.+
T Consensus        27 ~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g   86 (88)
T 2uzc_A           27 MPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRES   86 (88)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            357888887  6888877 999999999999999999999999999988899999998875

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.49  E-value=1.9e-07  Score=82.15  Aligned_cols=57  Identities=14%  Similarity=0.238  Sum_probs=51.2

Q ss_pred             CCcEEEecc--hhhhhcC-CCCCCCEEEEECCEecCCCCHHHHHHHHHhCCC----eEEEEEEe
Q psy2533         273 PERFYQNLS--VYRNQNG-RLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP----IVTLEIAK  329 (684)
Q Consensus       273 ~GIFV~sI~--GaAardG-rLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~----~VtL~V~R  329 (684)
                      .++||..|.  ++|++.| +|++||+|++|||+++.++++.+++.+|+..+.    .|.|.|.|
T Consensus        43 ~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           43 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP  106 (107)
T ss_dssp             EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEEC
T ss_pred             CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEc
Confidence            367888887  7899988 599999999999999999999999999999875    89999976

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=98.48  E-value=3.7e-07  Score=80.15  Aligned_cols=59  Identities=19%  Similarity=0.322  Sum_probs=53.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|+||..|.  ++|++.| |++||+|++|||..+.+++|.+++.+|+..+..|+|.|.|.+.
T Consensus        26 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~   86 (106)
T 3ngh_A           26 DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDS   86 (106)
T ss_dssp             CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEEECHHH
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECCe
Confidence            478888887  6788877 9999999999999999999999999999999999999998654

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.48  E-value=2.6e-07  Score=77.72  Aligned_cols=58  Identities=17%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .+++|..|.  ++|++. +|++||+|++|||..+.++++.+++.+++..+..|.|.|.|.+
T Consensus        25 ~~v~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   84 (85)
T 1rgw_A           25 MPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK   84 (85)
T ss_dssp             SCCBEEEECTTSHHHHS-SCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             CCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            367888887  677775 5999999999999999999999999999988888999998864

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.47  E-value=1.5e-07  Score=84.61  Aligned_cols=59  Identities=14%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             CCcEEEecc--hhhhhc-CCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC----CeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQN-GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG----PIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAard-GrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg----~~VtL~V~R~~  331 (684)
                      .++||..|.  ++|++. |+|++||+|++|||+.+.+++|.+++.+|+..+    ..|.|.|.|..
T Consensus        41 ~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~  106 (119)
T 2cs5_A           41 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA  106 (119)
T ss_dssp             EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred             CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEccc
Confidence            368898887  788888 689999999999999999999999999999875    48999998874

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.47  E-value=3.4e-07  Score=75.73  Aligned_cols=58  Identities=19%  Similarity=0.398  Sum_probs=51.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .|++|..+.  ++|++.|.|++||+|++|||..+.++++.++..+|+..+..+.|.|.|.
T Consensus        21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            367888887  7888887799999999999999999999999999998878999999875

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=2.8e-07  Score=79.45  Aligned_cols=57  Identities=26%  Similarity=0.307  Sum_probs=52.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .+++|..|.  ++|++.|+|++||+|++|||..+ +.+++++..+|+..+..|+|.|.|.
T Consensus        29 ~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v~~~   87 (91)
T 2e7k_A           29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSG   87 (91)
T ss_dssp             SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEEECC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            468888887  79999999999999999999999 9999999999999888999999875

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.46  E-value=3.8e-07  Score=79.06  Aligned_cols=58  Identities=21%  Similarity=0.436  Sum_probs=53.0

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      |++|..|.  ++|++.| |++||+|++|||..+.++++.+++.+|+..+..|.|.|.|.+.
T Consensus        35 g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~   94 (99)
T 3khf_A           35 HHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECSCS
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEECCC
Confidence            67888887  7888887 9999999999999999999999999999999999999998764

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.46  E-value=2.4e-07  Score=83.26  Aligned_cols=61  Identities=20%  Similarity=0.298  Sum_probs=52.8

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCe-EEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI-VTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~-VtL~V~R~~~  332 (684)
                      ..|+||..|.  ++|++.|+|++||+|++|||+.+.++++.+++.+|+..+.. +.|+|.|.+.
T Consensus        41 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~  104 (119)
T 1x6d_A           41 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT  104 (119)
T ss_dssp             CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCC
Confidence            3578999997  89999999999999999999999999999999999887765 5577777654

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.45  E-value=4.2e-07  Score=76.99  Aligned_cols=59  Identities=14%  Similarity=0.285  Sum_probs=52.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|++|..|.  ++|++.| |++||+|++|||+.+.++++.++..+|+..+..|.|.|.|.+.
T Consensus        26 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   86 (87)
T 2pa1_A           26 TPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRITS   86 (87)
T ss_dssp             EEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecCC
Confidence            367888887  6777765 9999999999999999999999999999988899999999763

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.45  E-value=4.6e-07  Score=80.17  Aligned_cols=59  Identities=17%  Similarity=0.366  Sum_probs=53.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ..|+||..|.  ++|++.| |++||+|++|||+.+.+++|.+++.+|+..+..|.|.|.|..
T Consensus        44 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~  104 (109)
T 1q3o_A           44 PALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT  104 (109)
T ss_dssp             CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECC
Confidence            4589999997  7888877 999999999999999999999999999988899999998754

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.44  E-value=4.1e-07  Score=77.45  Aligned_cols=61  Identities=18%  Similarity=0.367  Sum_probs=51.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .|++|..|.  ++|++.|+|++||+|++|||..+.++++.++..+|+..+..+.|.|.|.+..
T Consensus        23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~   85 (92)
T 3cyy_A           23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERA   85 (92)
T ss_dssp             EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC----
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCce
Confidence            367888887  6888877799999999999999999999999999998888999999987643

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=2.3e-07  Score=81.11  Aligned_cols=59  Identities=15%  Similarity=0.264  Sum_probs=52.2

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      +++|..|.  ++|++.|+|++||+|++|||+.+.++ +.+++.+++..+..|+|.|.|.+..
T Consensus        36 ~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v~R~~~~   96 (100)
T 2edp_A           36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG   96 (100)
T ss_dssp             EEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEEEEECCCS
T ss_pred             CeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEEEEeCCCC
Confidence            56777776  78999978999999999999999997 8899999998888999999998653

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.44  E-value=5.8e-07  Score=77.37  Aligned_cols=60  Identities=28%  Similarity=0.453  Sum_probs=54.2

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..|++|..|.  ++|++.| |++||+|++|||+.+.++++.+++..++..+..|.|.|.|.+.
T Consensus        33 ~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~   94 (97)
T 2w4f_A           33 DEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERE   94 (97)
T ss_dssp             BCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCSS
T ss_pred             CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCCc
Confidence            4689999997  7888887 9999999999999999999999999998889999999999764

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.43  E-value=6.1e-07  Score=80.75  Aligned_cols=58  Identities=24%  Similarity=0.344  Sum_probs=52.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .+++|..|.  ++|++.|.|++||+|++|||..+.+.++.++..+|+..+..|+|.|.+.
T Consensus        50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~  109 (114)
T 2gzv_A           50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL  109 (114)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            468888887  7888888899999999999999999999999999998888899998654

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.43  E-value=3.2e-07  Score=81.96  Aligned_cols=60  Identities=23%  Similarity=0.397  Sum_probs=53.9

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ++||..|.  ++|+++++|++||+|++|||+.+.++++.+++.+|+..+..|.|.|.|.+..
T Consensus        44 ~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~  105 (114)
T 1uew_A           44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEEL  105 (114)
T ss_dssp             SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSCC
T ss_pred             CeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcC
Confidence            56888887  7888868899999999999999999999999999999889999999987643

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.42  E-value=5.1e-07  Score=77.12  Aligned_cols=59  Identities=17%  Similarity=0.200  Sum_probs=52.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|++|..|.  ++|++.| |++||+|++|||..+.++++.++..+|+..+..|.|.|.|.+.
T Consensus        27 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~   87 (91)
T 2pkt_A           27 QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEH   87 (91)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEECC
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            367888887  6787777 9999999999999999999999999999988899999999764

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.41  E-value=5.1e-07  Score=78.10  Aligned_cols=58  Identities=21%  Similarity=0.374  Sum_probs=52.2

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      ..+++|..|.  ++|++.| |++||+|++|||+.+.++++.++..+|+..+..|+|.|.+.
T Consensus        36 ~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~   95 (96)
T 2ego_A           36 EMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYG   95 (96)
T ss_dssp             CEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEECC
T ss_pred             CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            3578999987  7888887 99999999999999999999999999999888999999764

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.41  E-value=3.2e-07  Score=79.42  Aligned_cols=58  Identities=19%  Similarity=0.384  Sum_probs=49.6

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~-~VtL~V~R~~  331 (684)
                      .|++|..|.  ++|++.| |++||+|++|||+.+.++++.++..+|+..+. .+.|.|.|.+
T Consensus        33 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g   93 (98)
T 2jxo_A           33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET   93 (98)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHHH
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCc
Confidence            378888887  7888887 99999999999999999999999999998755 4568877654

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.41  E-value=5.2e-07  Score=81.12  Aligned_cols=59  Identities=15%  Similarity=0.147  Sum_probs=47.8

Q ss_pred             cEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCC-eEEEEEEeCCccc
Q psy2533         275 RFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAKQGAIY  334 (684)
Q Consensus       275 IFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~-~VtL~V~R~~~~~  334 (684)
                      ++|..|.  ++|++.| |++||+|++|||+.+.++++.+++.+|+..+. .|.|.|.|.....
T Consensus        38 v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~~~~~   99 (111)
T 1vae_A           38 VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDST   99 (111)
T ss_dssp             CEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEECCC
T ss_pred             EEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEecCCCc
Confidence            4555554  5677766 99999999999999999999999999998765 5999998764333

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.41  E-value=7.1e-07  Score=77.91  Aligned_cols=59  Identities=25%  Similarity=0.447  Sum_probs=52.4

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQ  330 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~  330 (684)
                      ...|+||..|.  ++|++.| |++||+|++|||..+.++++++++.+|+. .+..|.|.|.|+
T Consensus        43 ~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           43 TDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             TCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             CCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence            35689999997  7888888 99999999999999999999999999976 457899999874

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.40  E-value=8.3e-07  Score=78.51  Aligned_cols=62  Identities=27%  Similarity=0.433  Sum_probs=55.4

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ...|++|..|.  ++|++.| |++||+|++|||+.+.++++.+++.+++..+..|.|.|.|.+..
T Consensus        44 ~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~  107 (110)
T 1x5q_A           44 DDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGP  107 (110)
T ss_dssp             TCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECSSC
T ss_pred             CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECCcc
Confidence            34689999997  7888887 99999999999999999999999999988899999999997643

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.40  E-value=5.9e-07  Score=80.83  Aligned_cols=57  Identities=12%  Similarity=0.106  Sum_probs=48.2

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCe-EEEEEEeCC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI-VTLEIAKQG  331 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~-VtL~V~R~~  331 (684)
                      +++|..|.  ++|++.| |++||+|++|||.++.++++.++..+|+..++. |.|.|.|..
T Consensus        45 ~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~  104 (109)
T 2vsv_A           45 PVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL  104 (109)
T ss_dssp             SCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence            35666665  6777765 999999999999999999999999999987775 999998764

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=8.1e-07  Score=76.55  Aligned_cols=59  Identities=15%  Similarity=0.141  Sum_probs=51.4

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .+++|..|.  ++|++.| |++||+|++|||+.+.++++.+++.+++..+..+.|.|.|.+.
T Consensus        32 ~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~   92 (94)
T 2eeg_A           32 APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS   92 (94)
T ss_dssp             SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEEECCSS
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            356777776  6777776 9999999999999999999999999999888899999988653

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1e-06  Score=76.79  Aligned_cols=59  Identities=22%  Similarity=0.317  Sum_probs=52.7

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .|++|..|.  ++|++.| |++||+|++|||..+.++++.+++.+++. +..|.|.|.|.+..
T Consensus        36 ~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~   96 (100)
T 2eeh_A           36 LGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHMMVRRMGSG   96 (100)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEEEEEECSCC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEEEEECCcC
Confidence            478999987  7888888 99999999999999999999999999987 78999999997643

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.36  E-value=7.4e-07  Score=78.04  Aligned_cols=60  Identities=20%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      +++|..|.  ++|++.| |++||+|++|||..+.++++.+++.+++..+..|.|.|.|.+...
T Consensus        30 ~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~~   91 (103)
T 1wf7_A           30 PLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA   91 (103)
T ss_dssp             EEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSCCC
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCcC
Confidence            46777776  6788877 999999999999999999999999999988999999998876543

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.35  E-value=9.9e-07  Score=79.88  Aligned_cols=61  Identities=26%  Similarity=0.283  Sum_probs=53.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~~  333 (684)
                      .+++|..|.  ++|++.|.|++||+|++|||+.+.++++.++..+|+..  +..|+|.|.|....
T Consensus        45 ~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           45 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             SCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred             CCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence            457888887  78888887999999999999999999999999999886  67999999997653

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.35  E-value=1.2e-06  Score=76.91  Aligned_cols=60  Identities=18%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|++|..|.  ++|+  ++|++||+|++|||+++.++++.+++..++..+..|.|.|.|.+..
T Consensus        38 ~~gv~V~~V~~~spA~--agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           38 ETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             CCCEEEEEECTTSTTB--TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred             CCCEEEEEECCCCchh--hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence            4689999997  5666  7799999999999999999999999998888899999999987654

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.33  E-value=7.8e-07  Score=76.65  Aligned_cols=59  Identities=14%  Similarity=0.277  Sum_probs=51.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|++|..|.  ++|++.| |++||+|++|||..+.++++.++..+|+..+..|+|.|.|.+.
T Consensus        30 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~   90 (94)
T 1vb7_A           30 TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG   90 (94)
T ss_dssp             EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCc
Confidence            356777776  6777766 9999999999999999999999999999888899999998754

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.31  E-value=1.1e-06  Score=78.34  Aligned_cols=60  Identities=18%  Similarity=0.313  Sum_probs=53.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .|++|..|.  ++|++.| |++||+|++|||+.+.++++.+++.+|+..+..|.|.|.|.+..
T Consensus        38 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~   99 (114)
T 2edz_A           38 DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSY   99 (114)
T ss_dssp             CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEEECHHHH
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCcc
Confidence            467888887  6788877 99999999999999999999999999998899999999987643

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.30  E-value=1.8e-06  Score=80.50  Aligned_cols=62  Identities=24%  Similarity=0.396  Sum_probs=53.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~~~  334 (684)
                      ..|++|..|.  ++|++.| |++||+|++|||+.+.++++.+++.+|+. .+..|.|.|.|.+...
T Consensus        63 ~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~  127 (139)
T 2vz5_A           63 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQK  127 (139)
T ss_dssp             CCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC---
T ss_pred             CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence            4689999997  7888888 99999999999999999999999999987 4678999999987543

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.30  E-value=1.1e-06  Score=80.33  Aligned_cols=62  Identities=27%  Similarity=0.456  Sum_probs=54.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYH  335 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~~  335 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+.+.++++.+++.+|+.  .+..|.|.|.|.+..+.
T Consensus        51 ~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~  116 (124)
T 3tsv_A           51 VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYR  116 (124)
T ss_dssp             SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHHHHH
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCchhh
Confidence            578999987  7888877 99999999999999999999999998884  67899999999866543

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.28  E-value=1.5e-06  Score=75.27  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=48.1

Q ss_pred             EEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         276 FYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       276 FV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      +|..|.  ++|++.| |++||+|++|||.++.++++.++..+|+..+..|.|.|.+.
T Consensus        34 ~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p~   89 (90)
T 1y7n_A           34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA   89 (90)
T ss_dssp             EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            666665  7888887 99999999999999999999999999999889999998753

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.28  E-value=8.1e-07  Score=77.92  Aligned_cols=61  Identities=16%  Similarity=0.222  Sum_probs=52.1

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH  335 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~  335 (684)
                      +++|..|.  ++|++.| |++||+|++|||+.+.++++.++..+|+..+..|.|.|.|.+...+
T Consensus        30 ~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~~~   92 (103)
T 1v5l_A           30 PLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW   92 (103)
T ss_dssp             EEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTTTTS
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCeEcc
Confidence            45666665  6677765 9999999999999999999999999999888899999999876544

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.27  E-value=1.2e-07  Score=102.49  Aligned_cols=68  Identities=24%  Similarity=0.434  Sum_probs=0.0

Q ss_pred             CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEec
Q psy2533         100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  178 (684)
Q Consensus       100 ~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~  178 (684)
                      ...+|||++.+|          +|..|.+||||+++| |++||+|++|||.++.+++|.+++.+|+..+..|.|+|...
T Consensus       306 ~~~~lG~~i~~g----------~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~  373 (388)
T 3suz_A          306 LKYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA  373 (388)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             CCCccceEEecC----------EEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEec
Confidence            345788887642          899999999999999 99999999999999999999999999999999999988653

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.26  E-value=1.2e-06  Score=85.41  Aligned_cols=59  Identities=24%  Similarity=0.410  Sum_probs=53.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      .|+||..|.  |+|++.| |++||+|++|||..+.++++.+++.+|+. +..|+|.|.|.+..
T Consensus       110 ~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l~v~r~g~~  170 (192)
T 3k1r_A          110 CGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIKVRHIGLI  170 (192)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEEEEEECCEE
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEEEEEECCcc
Confidence            478999987  7888888 99999999999999999999999999988 89999999998764

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.25  E-value=2.7e-06  Score=77.19  Aligned_cols=62  Identities=26%  Similarity=0.329  Sum_probs=52.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~~~~  334 (684)
                      .+++|..|.  ++|++.|-|++||+|++|||..+.++++.++..+|+.. +..+.|.|.|.+...
T Consensus        33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~   97 (127)
T 1b8q_A           33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF   97 (127)
T ss_dssp             SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCSE
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCceE
Confidence            367777776  78888885599999999999999999999999999874 578999999987543

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.24  E-value=8e-07  Score=98.54  Aligned_cols=63  Identities=27%  Similarity=0.443  Sum_probs=56.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYHG  336 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~~~  336 (684)
                      .|+||..|.  |+|++.| |++||+|++|||+++.++++++++.+|+.  .+..|+|.|.|.+..+..
T Consensus        23 ~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~~~   89 (468)
T 3shw_A           23 VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRR   89 (468)
T ss_dssp             TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHHH
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccchh
Confidence            579999997  7888877 99999999999999999999999999998  788999999998766554

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.20  E-value=6.7e-07  Score=77.66  Aligned_cols=58  Identities=33%  Similarity=0.572  Sum_probs=50.7

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEEEecCcc
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAI  181 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV~R~~~~  181 (684)
                      |++|..|.++|||++ | |++||+|++|||.++.+  ..+...+|...  +..|.|+|.|....
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   61 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREEKE   61 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            578999999999999 8 99999999999999976  57888888765  78899999998654

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.18  E-value=2.8e-06  Score=75.42  Aligned_cols=59  Identities=24%  Similarity=0.390  Sum_probs=52.5

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.++|||+++| |++||.|++|||.++.+  ..+...+|+. +..+.|+|.|....
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~~   93 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRET   93 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETTEE
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence            589999999999999999 99999999999999975  6778888877 67899999997654

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.18  E-value=3.3e-06  Score=76.45  Aligned_cols=60  Identities=18%  Similarity=0.355  Sum_probs=51.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCC-eEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~-~VtL~V~R~~~~  333 (684)
                      .|++|..|.  ++|++.| |++||+|++|||..+.++++.++..+|+.... .+.|.|.|.+..
T Consensus        33 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~~   95 (128)
T 2kjd_A           33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDE   95 (128)
T ss_dssp             CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHHH
T ss_pred             CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCcc
Confidence            378898887  7888888 99999999999999999999999999988644 577888886543

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.18  E-value=2.1e-06  Score=75.31  Aligned_cols=55  Identities=25%  Similarity=0.401  Sum_probs=49.7

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEE
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI  327 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V  327 (684)
                      ..+++|..|.  ++|++.| |++||+|++|||+.+.++++.+++.+|+..+..|+|.|
T Consensus        47 ~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v  103 (104)
T 2z17_A           47 EMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET  103 (104)
T ss_dssp             SCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHTTTEEEEEC
T ss_pred             CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Confidence            4578999997  7888888 99999999999999999999999999999888888875

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.17  E-value=2e-06  Score=74.77  Aligned_cols=59  Identities=27%  Similarity=0.473  Sum_probs=51.4

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~LvV~R~~~~  181 (684)
                      .|++|..|.++|||++ | |++||+|++|||.++.+  ..+...+|...  +..+.|.|.|....
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   65 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRKQ   65 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            4799999999999998 8 99999999999999976  46777888764  78899999998754

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.16  E-value=5.6e-06  Score=73.26  Aligned_cols=62  Identities=26%  Similarity=0.329  Sum_probs=53.7

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~~~~  334 (684)
                      .+++|..+.  ++|++.|-|++||+|++|||..+.++++.++..+|+.. +..+.|.|.|.+...
T Consensus        26 ~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~   90 (112)
T 1qau_A           26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF   90 (112)
T ss_dssp             SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTS
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCccc
Confidence            468888887  78888885599999999999999999999999999875 578999999987544

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.16  E-value=7.7e-06  Score=77.38  Aligned_cols=75  Identities=24%  Similarity=0.423  Sum_probs=63.3

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      ..++.+.+.....|||.+..         + +|..|.+++||+++| |++||+|++|||.++.++.+..+...++..+..
T Consensus        89 ~~~v~l~~~~~~~lG~~~~~---------g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~  157 (166)
T 1w9e_A           89 ERTITMHKDSTGHVGFIFKN---------G-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV  157 (166)
T ss_dssp             CEEEEEECCTTSCCSEEEET---------T-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             cEEEEEecCCCCcEeEEEeC---------C-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCCCE
Confidence            34555554455678998871         3 899999999999999 999999999999999999999999888888888


Q ss_pred             EEEEEE
Q psy2533         171 VTLEIA  176 (684)
Q Consensus       171 V~LvV~  176 (684)
                      +.+.|.
T Consensus       158 ~~l~v~  163 (166)
T 1w9e_A          158 VTITIM  163 (166)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888774

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.15  E-value=3.2e-06  Score=71.80  Aligned_cols=58  Identities=12%  Similarity=0.251  Sum_probs=49.7

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~  331 (684)
                      .|++|..|.  ++|++.| |++||+|++|||..+.+.++.++..+|+.  .+..|.|.|.|.+
T Consensus        28 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   89 (90)
T 2eaq_A           28 PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG   89 (90)
T ss_dssp             TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            468888887  6777776 99999999999999988899999999985  5789999998864

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.42  E-value=3.1e-07  Score=82.65  Aligned_cols=56  Identities=20%  Similarity=0.328  Sum_probs=49.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA  328 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~  328 (684)
                      .|+||..|.  |+|+++++|++||+|++|||.++.++++.+++.+|+..+..|+|.|.
T Consensus        53 ~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~V~  110 (112)
T 2lob_A           53 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV  110 (112)
Confidence            367888886  78888788999999999999999999999999999988888888774

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.10  E-value=5.7e-06  Score=75.08  Aligned_cols=62  Identities=19%  Similarity=0.394  Sum_probs=52.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCCcccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGAIYH  335 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~~~~~  335 (684)
                      ..|++|..|.  ++|++.|+|++||+|++|||+.+.  ++.++..+|+.. +..|.|.|.|.+....
T Consensus        47 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~~~~  111 (124)
T 1wh1_A           47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQLD  111 (124)
T ss_dssp             CCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEEEEECSSCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCEEEEEEEECCEEee
Confidence            3589999997  788888779999999999999997  478999999875 6789999999875543

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.09  E-value=1.2e-05  Score=73.15  Aligned_cols=60  Identities=23%  Similarity=0.418  Sum_probs=51.6

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+.+.++++.+++..++. +..|.|.|.|.+...
T Consensus        46 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~~  107 (128)
T 1uf1_A           46 LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKS-SRHLILTVKDVGRLP  107 (128)
T ss_dssp             CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTT-CSEEEEEEECCSCCS
T ss_pred             CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhc-CCeEEEEEEECCccc
Confidence            478999987  6788877 99999999999999999999888888876 468999999876544

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=5e-06  Score=75.24  Aligned_cols=58  Identities=14%  Similarity=0.334  Sum_probs=50.1

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      |++|..|.  ++|++.| |++||+|++|||..+.++++.++..+|+..  .+.|+|.|.....
T Consensus        45 gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~--~v~l~v~R~p~~~  104 (114)
T 2d8i_A           45 RLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP--SLGLLVRTYPELE  104 (114)
T ss_dssp             EEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTSS--EEEEEEEECCCSC
T ss_pred             CEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC--cEEEEEEECCCCC
Confidence            67888887  7888887 999999999999999999999999999853  8999999876443

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.07  E-value=5.9e-06  Score=76.31  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCccc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  182 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~~  182 (684)
                      .+++|..|.++|||+ +| |++||+|++|||.++.+.  .+...+|..  .+..|.|+|.|.....
T Consensus        57 ~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~  118 (134)
T 2l97_A           57 SGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGKEE  118 (134)
T ss_dssp             SCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTEEE
T ss_pred             CCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            579999999999999 99 999999999999999764  566677765  4789999999987543

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.07  E-value=2.7e-06  Score=85.26  Aligned_cols=60  Identities=18%  Similarity=0.352  Sum_probs=51.7

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeE-EEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV-TLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~V-tL~V~R~~~~  333 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+.+.++++.+++.+|+..+..| .|.|.|.+..
T Consensus        33 ~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~V~R~g~~   95 (216)
T 2krg_A           33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDE   95 (216)
T ss_dssp             CSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEEECCHHHHH
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEEECCEE
Confidence            367888887  7888887 9999999999999999999999999998888888 8888776543

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.06  E-value=6.2e-06  Score=72.20  Aligned_cols=59  Identities=24%  Similarity=0.403  Sum_probs=50.6

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.+++||+. | |++||+|++|||..+.+  ..+...+|..  .+..+.|+|.|....
T Consensus         7 ~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~~   67 (100)
T 3i18_A            7 DGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYKHGDKN   67 (100)
T ss_dssp             CCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             CCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            4899999999999995 8 99999999999999976  4677777775  478899999997654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.06  E-value=4.1e-06  Score=90.71  Aligned_cols=65  Identities=28%  Similarity=0.468  Sum_probs=57.7

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcccccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYHGL  337 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~~~~  337 (684)
                      +.|+||..|.  |+|++.| |++||+|++|||.++.++++++++.+|+.  .|..|+|+|.|.+..+..+
T Consensus        30 ~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~~~~   98 (391)
T 3tsz_A           30 DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRI   98 (391)
T ss_dssp             TTEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHGGG
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcccccc
Confidence            3588999997  7888888 99999999999999999999999999995  7889999999987766553

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.06  E-value=3.3e-06  Score=73.50  Aligned_cols=58  Identities=24%  Similarity=0.400  Sum_probs=49.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .|+||..|.  ++|++.| |++||+|++|||+.+.++++.+++.+++. +..|.|.|.|.+.
T Consensus        35 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~   94 (101)
T 1uez_A           35 VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG-SKKLVLSVYSAGR   94 (101)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS-SSSCCEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcC-CCeEEEEEEECCc
Confidence            478999887  7888887 99999999999999999999887777754 4679999987653

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.02  E-value=1.2e-05  Score=86.53  Aligned_cols=76  Identities=21%  Similarity=0.345  Sum_probs=63.8

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEecC
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQG  179 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~~  179 (684)
                      -.|+|+.+....   ....+++|..|.++|||+++| |++||+|++|||.++.+++..+++.+|+. .+..|.|+|.|..
T Consensus        84 ~~giG~~~~~~~---~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g  159 (388)
T 1fc6_A           84 VTGVGLEITYDG---GSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG  159 (388)
T ss_dssp             CBBCSEEEEECT---TCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             eEEEEEEEEEee---cCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            357899887421   012479999999999999999 99999999999999999998999999975 4778999999876


Q ss_pred             c
Q psy2533         180 A  180 (684)
Q Consensus       180 ~  180 (684)
                      .
T Consensus       160 ~  160 (388)
T 1fc6_A          160 A  160 (388)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.00  E-value=9.9e-06  Score=72.55  Aligned_cols=56  Identities=13%  Similarity=0.181  Sum_probs=46.9

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh---CCCeEEEEEEeC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR---TGPIVTLEIAKQ  330 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~---sg~~VtL~V~R~  330 (684)
                      +.+|.+|.  ++|++.| |++||+|++|||..+...+++++..+++.   ++..|.|+|+..
T Consensus        40 ~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~~  100 (101)
T 3qik_A           40 AVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVATK  100 (101)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEecC
Confidence            45666665  5676666 99999999999999988899999999987   588999999753

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=97.98  E-value=8.8e-06  Score=72.32  Aligned_cols=58  Identities=24%  Similarity=0.474  Sum_probs=50.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC-Cc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ-GA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~-~~  332 (684)
                      .|++|..|.  ++|++.| |++||+|++|||+.+.++++.+++.+++.. ..+.|.|.|. +.
T Consensus        41 ~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~r~~g~  101 (114)
T 1x5n_A           41 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTISIVAAAGR  101 (114)
T ss_dssp             CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEEEEECSSTTT
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEcCCCC
Confidence            478898887  6777776 999999999999999999998899999876 6899999887 43

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.92  E-value=1.2e-05  Score=71.23  Aligned_cols=59  Identities=29%  Similarity=0.514  Sum_probs=50.8

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      .+++|..|.+++||+++| |++||+|++|||.++.+  ..+....|+ .+..+.|.|.|....
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g~~   93 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGNDD   93 (112)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETTEE
T ss_pred             CCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECCEE
Confidence            579999999999999999 99999999999999975  567777774 467899999987643

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=97.91  E-value=9.2e-06  Score=69.10  Aligned_cols=59  Identities=34%  Similarity=0.463  Sum_probs=49.7

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEecCcc
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGAI  181 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~~~~  181 (684)
                      +++|..|.+++||+++| |++||+|++|||..+.+  ..+...+|... +..+.|+|.|....
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~~   64 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGSP   64 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTEE
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECCeE
Confidence            46788999999999999 99999999999999975  57777777754 67899999987643

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.86  E-value=1.1e-05  Score=68.76  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCc
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGA  180 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~  180 (684)
                      |+.|..+.|++||+++| |++||+|++|||.++.+  ..+...++..  .+..+.|+|.|...
T Consensus        20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g~   79 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            67888899999999999 99999999999999976  4566666764  36789999998764

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=97.85  E-value=3.3e-05  Score=68.06  Aligned_cols=54  Identities=17%  Similarity=0.418  Sum_probs=46.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      .|+||..+.  ++|++.| |++||+|++|||+.+.+++++++..+++.  ..++|.|..
T Consensus        35 ~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~--~~l~ltV~~   90 (94)
T 3kzd_A           35 RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRT   90 (94)
T ss_dssp             CEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS--SEEEEEEEE
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC--CeEEEEEEe
Confidence            478898887  6777766 99999999999999999999999999974  467887764

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.84  E-value=2.1e-05  Score=71.41  Aligned_cols=61  Identities=16%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             CCCcEEEecc----hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS----VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~----GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|++|..|.    ++|++.| |++||+|++|||..+.+++|.++..+|+..+..|.|.|.|.+..
T Consensus        43 ~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~  107 (118)
T 2yub_A           43 ATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVP  107 (118)
T ss_dssp             CCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSC
T ss_pred             CCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEE
Confidence            3577888874    4677765 99999999999999999999999999988777899999987643

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.84  E-value=2.7e-05  Score=88.62  Aligned_cols=74  Identities=20%  Similarity=0.290  Sum_probs=58.9

Q ss_pred             CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEe
Q psy2533         100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAK  177 (684)
Q Consensus       100 ~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R  177 (684)
                      ...+||+.+....      .+++|..|.+||||+++| |++||+|++|||..+..   .+...+|+.  .+..|.|+|.|
T Consensus       483 ~~~~lG~~~~~~~------~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l~v~R  552 (597)
T 4fgm_A          483 ARVNFGAKYKASP------QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTIHAFR  552 (597)
T ss_dssp             CSCCCSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEEEEEE
T ss_pred             CccccceEEeccC------CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEEEEEE
Confidence            3468999886532      279999999999999999 99999999999999953   334455543  57899999999


Q ss_pred             cCcccc
Q psy2533         178 QGAIYH  183 (684)
Q Consensus       178 ~~~~~~  183 (684)
                      ++....
T Consensus       553 ~g~~~~  558 (597)
T 4fgm_A          553 RDELMT  558 (597)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            876543

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=97.81  E-value=3.1e-05  Score=67.40  Aligned_cols=56  Identities=21%  Similarity=0.292  Sum_probs=47.9

Q ss_pred             EEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-C-CEEEEEEEecCc
Q psy2533         122 YIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-G-PIVTLEIAKQGA  180 (684)
Q Consensus       122 fIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g-~~V~LvV~R~~~  180 (684)
                      +|..|.++|||+++| |++||+|++|||..+.+  ..++...|... + ..|.|+|.|...
T Consensus         5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             BEEEECTTSHHHHTT-CCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             EEEeeCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            678899999999999 99999999999999976  56777777654 3 689999999864

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.76  E-value=4.4e-05  Score=67.29  Aligned_cols=58  Identities=17%  Similarity=0.247  Sum_probs=47.3

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCc
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGA  180 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~  180 (684)
                      |++|..+.|++||++.| |++||+|++|||.++.+..  +...++.  ..+..+.|+|.|...
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~g~   97 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDGQ   97 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEETTE
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEECCE
Confidence            57788888888889999 9999999999999998764  3445555  347789999998764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.76  E-value=3.7e-05  Score=80.32  Aligned_cols=60  Identities=30%  Similarity=0.431  Sum_probs=51.4

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEe-cCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAK-QGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R-~~~~  181 (684)
                      .+++|..|.+++||+++| |++||+|++|||.++.+.  .+...+|..  .+..|.|+|.| ....
T Consensus       242 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g~~  304 (324)
T 1y8t_A          242 LGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSGGS  304 (324)
T ss_dssp             SSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSCCE
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCCCE
Confidence            579999999999999999 999999999999999764  566667754  47899999999 6643

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.75  E-value=2.2e-05  Score=85.51  Aligned_cols=75  Identities=17%  Similarity=0.220  Sum_probs=58.8

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~  180 (684)
                      ..||||++....+.. ....++|..|.+||||+++| |++||+|++|||.++.++.   +..+|+..+..|+|.|.|...
T Consensus        73 ~~G~~~~l~~~~~~~-~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           73 SYGFDYTLYKVLDND-TAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             BCSEEEEEEECTTCS-SCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             ccceEEEEEEcCCCC-cceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            567777776532211 11248899999999999999 9999999999999999885   566676677789999988753

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=97.71  E-value=4.1e-05  Score=66.39  Aligned_cols=59  Identities=19%  Similarity=0.296  Sum_probs=47.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~~~  334 (684)
                      ..|++|..|.  ++|++ | |++||+|++|||..+.++  .+...+|...  +..+.|.|.|.+...
T Consensus         4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~   66 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRKQH   66 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTEEE
T ss_pred             CCcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            4578888886  67777 5 999999999999999764  5777778764  789999999987543

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.68  E-value=7.8e-05  Score=81.48  Aligned_cols=60  Identities=28%  Similarity=0.413  Sum_probs=54.7

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.+++||+++| |++||+|++|||.++.+  ..+.+.+|+..+..+.|+|.|....
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~~  422 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNES  422 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCeEEEEEEECCEE
Confidence            489999999999999999 99999999999999975  6889999998888999999998754

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=97.68  E-value=5.5e-05  Score=80.43  Aligned_cols=62  Identities=21%  Similarity=0.434  Sum_probs=53.7

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcccc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYH  183 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~~~  183 (684)
                      .|++|..|.++|||+++| |++||+|++|||..+.+  ..+...+|..  .+..|.|+|.|......
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~~~  326 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKPLE  326 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEETTEEEE
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEEEE
Confidence            578999999999999999 99999999999999975  5677777765  58899999999876543

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.66  E-value=8.2e-05  Score=77.69  Aligned_cols=61  Identities=18%  Similarity=0.411  Sum_probs=53.1

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCccc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  182 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~~  182 (684)
                      .+++|..|.+++||+++| |++||+|++|||.++.+  ..+...+|+.  .+..|.|+|.|.....
T Consensus       244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~~  306 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDKQL  306 (318)
T ss_dssp             CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSSCEE
T ss_pred             CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            579999999999999999 99999999999999976  4677777875  5789999999987543

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.64  E-value=0.00015  Score=64.25  Aligned_cols=59  Identities=15%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ..|++|..+.  ++|++.| |++||+|++|||..+.+  ..+...+|+. +..+.|.|.|.+...
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~~~   94 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRETL   94 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETTEEE
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCEEE
Confidence            4688999987  6788776 99999999999999974  5677888876 688999999976543

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=97.64  E-value=4e-05  Score=66.41  Aligned_cols=57  Identities=21%  Similarity=0.396  Sum_probs=45.0

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCccc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAIY  334 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~~~  334 (684)
                      |++|..|.  ++|++ | |++||+|++|||..+.++  .+...+|...  +..|+|.|.|.+...
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~   62 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEKEK   62 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSCEE
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence            45666665  67777 5 999999999999999754  6788888764  788999999977543

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.64  E-value=5.1e-05  Score=74.82  Aligned_cols=74  Identities=14%  Similarity=0.055  Sum_probs=56.9

Q ss_pred             CcccEEEEeccCCCCCcccEEEEEecCCChhcccCcccc-CCeeeecCCeecCCCCHHHHHHHHHcC-CCEEEEEEEecC
Q psy2533         102 QEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQA-GDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQG  179 (684)
Q Consensus       102 ~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqv-GDrILaVNG~sl~g~sh~eAV~lLk~s-g~~V~LvV~R~~  179 (684)
                      ..||+++..-........|++|..|.++|||+++| |++ ||+|++|||. +.+  ..+...+|+.. +..|.|.|.|..
T Consensus        95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~--~~~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A           95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNE--SEDLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCS--SSCHHHHHHHTTTSCEEEEEEETT
T ss_pred             CccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCC--HHHHHHHHHhCCCCeEEEEEEECC
Confidence            46898887422111122589999999999999999 999 9999999997 644  45667777765 778999998865

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.47  E-value=9e-05  Score=81.50  Aligned_cols=60  Identities=8%  Similarity=0.210  Sum_probs=54.3

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.++|||+++| |++||+|++|||.++.+  ..+...+|+..+..+.|.|.|....
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~~  445 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLRGPGS  445 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEETTEE
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEECCEE
Confidence            479999999999999999 99999999999999975  5889999998888899999998643

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=97.47  E-value=0.00025  Score=61.89  Aligned_cols=59  Identities=17%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      ..|++|..+.  ++|+ . +|++||+|++|||..+.++  .+...+|..  .+..+.|.|.|.+...
T Consensus         6 ~~Gv~V~~V~~~spA~-~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~   68 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAA-D-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDKNE   68 (100)
T ss_dssp             CCCEEEEEECTTSGGG-G-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             CCCEEEEEeCCCCchH-H-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            4689999987  6777 4 6999999999999999764  566777765  4678999999977543

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.43  E-value=0.00012  Score=67.19  Aligned_cols=57  Identities=25%  Similarity=0.363  Sum_probs=48.3

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGA  180 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~  180 (684)
                      .+++|..|.+++||+++  |++||+|++|||..+.+  ..+...+|..  .+..|.|+| |...
T Consensus        25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CceEEEEECCCChHHHh--cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            47999999999999988  99999999999999976  4667777763  477899999 7654

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.41  E-value=0.00018  Score=75.50  Aligned_cols=59  Identities=24%  Similarity=0.390  Sum_probs=52.1

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.+++||+++| |++||+|++|||..+.+  ..+...+|+. +..|.|.|.|....
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~~  314 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRET  314 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTEE
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence            489999999999999999 99999999999999975  5777788876 57899999998754

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.37  E-value=0.00039  Score=61.53  Aligned_cols=58  Identities=24%  Similarity=0.406  Sum_probs=46.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|++|..+.  ++|++.| |++||+|++|||..+.+  ..+...+|+ .+..+.|.|.|.+..
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g~~   93 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGNDD   93 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETTEE
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECCEE
Confidence            4588998887  6777765 99999999999999975  456666774 478899999997653

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.37  E-value=0.00013  Score=77.32  Aligned_cols=62  Identities=24%  Similarity=0.341  Sum_probs=53.2

Q ss_pred             ccEEEEEecCCChhcccCcccc-----------CCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcccc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQA-----------GDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIYH  183 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqv-----------GDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~~~  183 (684)
                      .|++|..|.++|||+++| |++           ||+|++|||.++.+.  .+...+|..  .++.|+|+|.|......
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~  325 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHKEK  325 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSEEE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEEEE
Confidence            589999999999999999 998           999999999999876  667777754  47899999999876543

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.32  E-value=0.0003  Score=59.72  Aligned_cols=56  Identities=18%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~  332 (684)
                      |+.|..+.  ++|++.| |++||+|++|||..+.++  .+...++..  .+..+.|.|.|.+.
T Consensus        20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~   79 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            45555555  4566655 999999999999999865  455566654  46789999998764

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=97.29  E-value=0.00062  Score=62.71  Aligned_cols=58  Identities=17%  Similarity=0.267  Sum_probs=46.7

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~  333 (684)
                      ..|++|..|.  ++|+  ++|++||+|++|||..+.++  .+...+|..  .++.|+|.|.|.+..
T Consensus        56 ~~g~~V~~V~~~spA~--aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~  117 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN--GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGKE  117 (134)
T ss_dssp             CSCEEEEECSTTSGGG--TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTEE
T ss_pred             CCCEEEEEECCCCchH--HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            4688999987  5666  66999999999999999865  466666766  478999999997754

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.20  E-value=0.00094  Score=58.72  Aligned_cols=55  Identities=18%  Similarity=0.207  Sum_probs=40.0

Q ss_pred             cEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCc
Q psy2533         275 RFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGA  332 (684)
Q Consensus       275 IFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~  332 (684)
                      ++|....  ++|++.| |++||+|++|||..+.++.  +...++..  .+..+.|.|.|.+.
T Consensus        39 ~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~g~   97 (105)
T 2i4s_A           39 YRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDGQ   97 (105)
T ss_dssp             EEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEETTE
T ss_pred             EEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEECCE
Confidence            3444443  4556665 9999999999999999876  34445543  56789999999764

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=97.17  E-value=0.00071  Score=57.29  Aligned_cols=55  Identities=33%  Similarity=0.479  Sum_probs=41.7

Q ss_pred             EEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCcc
Q psy2533         276 FYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAI  333 (684)
Q Consensus       276 FV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~~  333 (684)
                      +|..+.  ++|++.| |++||+|++|||..+.+  ..+...+|.. .+..+.|.|.|.+..
T Consensus         7 ~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~~   64 (91)
T 2zpm_A            7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGSP   64 (91)
T ss_dssp             BCSEECTTSHHHHTT-CCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTEE
T ss_pred             EEEEECCCChHHhcC-CCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECCeE
Confidence            344444  5666655 99999999999999975  4677777765 467899999997754

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.06  E-value=0.00094  Score=71.68  Aligned_cols=59  Identities=20%  Similarity=0.321  Sum_probs=50.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~  332 (684)
                      .+++|..+.  ++|++.| |++||+|++|||+++.+++..++..+|+. .+..|+|.|.|.+.
T Consensus        99 ~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           99 KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             CcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            467888887  6777776 99999999999999999998999999875 46789999999875

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.05  E-value=9.1e-05  Score=77.78  Aligned_cols=59  Identities=24%  Similarity=0.472  Sum_probs=0.0

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.+++||+++| |++||+|++|||..+.+  ..+...+|+. +..|.|+|.|....
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~~  312 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMVVRRGNED  312 (332)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence            479999999999999999 99999999999999965  4566677765 77899999997653

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=96.94  E-value=0.0012  Score=57.34  Aligned_cols=54  Identities=20%  Similarity=0.283  Sum_probs=40.8

Q ss_pred             EEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-C-CeEEEEEEeCCc
Q psy2533         276 FYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-G-PIVTLEIAKQGA  332 (684)
Q Consensus       276 FV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g-~~VtL~V~R~~~  332 (684)
                      +|..|.  ++|++.| |++||+|++|||+.+.++  .+....|... + ..|.|.|.|.+.
T Consensus         5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             BEEEECTTSHHHHTT-CCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             EEEeeCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCC
Confidence            455554  5666655 999999999999999764  5666666553 3 689999999874

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=96.83  E-value=0.00018  Score=79.10  Aligned_cols=59  Identities=20%  Similarity=0.366  Sum_probs=0.0

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~  180 (684)
                      .+++|..|.+++||++.| |++||+|++|||..+.+  +.+...+|+.....|.|.|.|...
T Consensus       383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~--~~~l~~~l~~~~~~v~l~v~R~g~  441 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGDS  441 (448)
T ss_dssp             --------------------------------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCeEEEEEEECCE
Confidence            479999999999999999 99999999999999974  678888888776688999988764

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=96.78  E-value=0.0023  Score=67.91  Aligned_cols=60  Identities=18%  Similarity=0.318  Sum_probs=49.2

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      ..|++|..|.  ++|++.| |++||+|++|||+.+.+  ..+...+|..  .++.|+|.|.|.+...
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~~  325 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKPL  325 (345)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             CceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            4789999997  6777766 99999999999999985  4567777765  5789999999987543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.77  E-value=0.0022  Score=75.88  Aligned_cols=70  Identities=11%  Similarity=0.118  Sum_probs=58.1

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCC--------ChhcccCc-cccCCeeeecCCeecCCCCHHHHHHHHHc-CCCE
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKG--------GAADANGR-LQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPI  170 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pG--------GpA~r~Gr-LqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~  170 (684)
                      ..|+|+.+.--      ..+++|..|.+|        +||+++|. |+ ||+|++|||.++.++.  +++.+|+. .+..
T Consensus       736 ~~g~G~~~~~~------~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~  806 (1045)
T 1k32_A          736 SGRIACDFKLD------GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTS  806 (1045)
T ss_dssp             CCBCSEEEEEE------TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSE
T ss_pred             cceecEEEEEe------CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCE
Confidence            45889888642      137999999998        99999994 89 9999999999999886  66777775 4788


Q ss_pred             EEEEEEecC
Q psy2533         171 VTLEIAKQG  179 (684)
Q Consensus       171 V~LvV~R~~  179 (684)
                      |.|+|.|..
T Consensus       807 v~l~v~r~~  815 (1045)
T 1k32_A          807 ARIRLSGKG  815 (1045)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEECCC
Confidence            999999875

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=96.65  E-value=0.0026  Score=66.33  Aligned_cols=60  Identities=12%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      ..|++|..|.  ++|++.| |++||+|++|||+.+.++  .+...+|+.  .++.|.|.|.|.+...
T Consensus       243 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~  306 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQL  306 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEESSSCEE
T ss_pred             CCcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            4689999997  6777665 999999999999999764  567777775  5789999999987543

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=96.61  E-value=0.0017  Score=59.54  Aligned_cols=57  Identities=12%  Similarity=0.190  Sum_probs=44.6

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGA  332 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~  332 (684)
                      ...|++|..|.  ++|++.  |++||+|++|||..+.++  .+...+|..  .+..|.|.| |.+.
T Consensus        23 ~~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           23 QPDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CCCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            34678888887  566665  999999999999999865  466666763  477899999 8665

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=96.45  E-value=0.0051  Score=64.42  Aligned_cols=59  Identities=15%  Similarity=0.232  Sum_probs=48.0

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ..|++|..|.  ++|++.| |++||+|++|||+.+.+  ..+...+|+. +..|.|.|.|.+...
T Consensus       255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~~~  315 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRETL  315 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTEEE
T ss_pred             CCCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCEEE
Confidence            4689999997  6777766 99999999999999975  4567777765 688999999987543

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=96.27  E-value=0.004  Score=64.87  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=45.9

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEe-CCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAK-QGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R-~~~  332 (684)
                      ..|++|..+.  ++|++.| |++||+|++|||+.+.++  .+...+|..  .++.|+|.|.| .+.
T Consensus       241 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          241 TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             SSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCCC
Confidence            5688998887  5666655 999999999999999865  456666654  47899999999 654

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=96.03  E-value=0.0068  Score=69.08  Aligned_cols=58  Identities=21%  Similarity=0.270  Sum_probs=44.6

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      .|++|..|.  |+|++.| |++||+|++|||..+....   ...+|+.  .|+.|+|.|.|.+...
T Consensus       496 ~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~~~---l~~~l~~~~~g~~v~l~v~R~g~~~  557 (597)
T 4fgm_A          496 QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQS---VKRILERYIPGDTVTIHAFRRDELM  557 (597)
T ss_dssp             TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCTTT---HHHHHTTCCTTCEEEEEEEETTEEE
T ss_pred             CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCHHH---HHHHHHhcCCCCEEEEEEEECCEEE
Confidence            467888887  6777766 9999999999999995334   3444543  5789999999987644

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=95.92  E-value=0.0057  Score=64.66  Aligned_cols=59  Identities=20%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCC-----------CCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQA-----------GDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~-----------GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      .|++|..+.  ++|++.| |++           ||+|++|||+.+.++  .+...+|..  .++.|+|.|.|.+...
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~  324 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHKE  324 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSEE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEEE
Confidence            689999997  7887776 998           999999999999876  466677754  4789999999987543

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=95.91  E-value=0.0035  Score=68.23  Aligned_cols=55  Identities=15%  Similarity=0.239  Sum_probs=44.5

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .++|..|.  +||++.| |++||+|++|||..+.++.   ...+|+..+..|+|.|.|.+.
T Consensus        91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           91 NALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             eEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            35677776  6788776 9999999999999999885   456666667789999999754

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=95.54  E-value=0.0022  Score=67.25  Aligned_cols=58  Identities=14%  Similarity=0.300  Sum_probs=0.0

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|++|..|.  ++|++.| |++||+|++|||+.+.++  .+...+|+. +..|+|.|.|.+..
T Consensus       253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~-~~~v~l~v~R~g~~  312 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSA--NDVSDVIKR-ESTLNMVVRRGNED  312 (332)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcC-CCCCCEEEEECCEECCCH--HHHHHHHhC-CCeEEEEEEECCEE
Confidence            4688999987  5666655 999999999999999754  455666664 77899999997653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=94.04  E-value=0.062  Score=63.58  Aligned_cols=56  Identities=13%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             CCcEEEecc----------hhhhhcC-CCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS----------VYRNQNG-RLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~----------GaAardG-rLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~  331 (684)
                      .+++|..+.          ++|++.| .|+ ||+|++|||+.+.++.  +++.+|+. .|..|+|.|.|.+
T Consensus       748 ~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~v~r~~  815 (1045)
T 1k32_A          748 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKG  815 (1045)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSS
T ss_pred             CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEEEECCC
Confidence            456777775          4677766 399 9999999999999987  67777776 4678999999976

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=92.57  E-value=0.15  Score=57.53  Aligned_cols=55  Identities=15%  Similarity=0.154  Sum_probs=46.6

Q ss_pred             cccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC-EEEEEE
Q psy2533         118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEI  175 (684)
Q Consensus       118 ~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~-~V~LvV  175 (684)
                      ..+++|+.|.|+++|...| ++.||+|++|||+++.++  .+..++|+++.+ .+.|.+
T Consensus       414 ~~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          414 EQIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             CCCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEE
T ss_pred             ceEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEE
Confidence            3479999999999999999 999999999999999875  667889998855 355554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	684
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	1e-15
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	4e-07
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	4e-14
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	6e-07
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	7e-14
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	3e-06
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	8e-14
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	5e-06
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	2e-13
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	2e-07
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	4e-13
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	1e-06
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	5e-13
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	3e-05
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	6e-13
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	3e-05
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	7e-13
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	1e-06
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	3e-12
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	1e-04
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	3e-12
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	6e-05
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	6e-12
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	7e-05
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	6e-12
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	2e-05
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	6e-12
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	1e-04
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	9e-12
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	2e-05
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-11
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-04
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	1e-11
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	7e-06
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-11
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	7e-04
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	2e-11
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	3e-04
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	3e-11
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	3e-04
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	3e-11
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	4e-05
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-11
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-04
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	3e-11
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	3e-05
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	4e-11
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	6e-04
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	5e-11
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	4e-04
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-11
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-04
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	8e-11
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-04
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	9e-11
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-04
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	1e-10
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	3e-05
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	1e-10
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	4e-04
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	1e-10
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	2e-04
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	2e-10
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	0.002
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-10
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	4e-10
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	5e-10
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-04
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	5e-10
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	0.002
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	5e-10
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	6e-10
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	1e-06
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	8e-10
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	8e-10
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-04
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	8e-10
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	4e-05
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	9e-10
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	1e-04
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-09
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	8e-05
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	1e-09
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	0.002
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-09
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	8e-09
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	9e-09
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	2e-08
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	3e-06
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-08
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-08
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-08
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	4e-08
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-05
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	1e-07
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-07
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-04
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	1e-07
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	2e-07
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	2e-07
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	2e-07
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	4e-07
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	9e-07
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	3e-04
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	3e-06
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	1e-04
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	2e-04
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	7e-04
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	8e-04
d2hgaa1	103	b.36.1.6 (A:23-125) Uncharacterized protein MTH136	8e-04
d1sota1	99	b.36.1.4 (A:255-353) Stress sensor protease DegS,	0.002

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 1e-15
 Identities = 51/69 (73%), Positives = 62/69 (89%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
           +GAGQD+LGIY+KSVVKGGAAD +GRL AGDQLL VDG+SLVG++QE+AAE + RT  +V
Sbjct: 24  KGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVV 83

Query: 172 TLEIAKQGA 180
           TLE+AKQGA
Sbjct: 84  TLEVAKQGA 92

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 32/47 (68%), Positives = 40/47 (85%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
            +GRL AGDQLL VDG+SLVG++QE+AAE + RT  +VTLE+AKQGA
Sbjct: 46  VDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGA 92

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.0 bits (161), Expect = 4e-14
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G  +    I I S+ KGG A+  G +  GD++L ++  SL G    +A   L   G  VT
Sbjct: 22  GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT 81

Query: 173 LEIAKQG 179
           L+I KQ 
Sbjct: 82  LKIKKQT 88

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
           + G +  GD++L ++  SL G    +A   L   G  VTL+I KQ 
Sbjct: 43  RTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT 88

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 7e-14
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G+   GI+IK V++   A  NG L+ GD++++VDG  L   + E+A E + + G  V   
Sbjct: 32  GEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM 91

Query: 175 I 175
           +
Sbjct: 92  V 92

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +NG L+ GD++++VDG  L   + E+A E + + G  V   +
Sbjct: 51  KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 92

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 8e-14
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
             AG ++LGI++K+V +GGAA  +GR+Q  DQ+++VDG SLVG+TQ  AA  L  T   V
Sbjct: 26  ADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNV 85

Query: 172 TLEIAKQ 178
              I ++
Sbjct: 86  RFVIGRE 92

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++GR+Q  DQ+++VDG SLVG+TQ  AA  L  T   V   I ++
Sbjct: 48  RDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 92

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
                 IYI  +++GGAA  +GRLQ GD+LL V+  +L  +  E+A   L  T  +V L+
Sbjct: 27  IPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK 86

Query: 175 IAKQGA 180
           +AK G+
Sbjct: 87  VAKPGS 92

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
            ++GRLQ GD+LL V+  +L  +  E+A   L  T  +V L++AK G+
Sbjct: 45  QKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 92

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
             D  GI++  V   G A     LQ GD++++ +G S + I   +A   L      V L 
Sbjct: 39  RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 96

Query: 175 IAKQ 178
           I ++
Sbjct: 97  IVRE 100

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
             LQ GD++++ +G S + I   +A   L      V L I ++
Sbjct: 58  KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.0 bits (153), Expect = 5e-13
 Identities = 21/74 (28%), Positives = 37/74 (50%)

Query: 106 LSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV 165
           ++  ++     D   I+I  ++ GGAA  +GRL+  D +L V+   +  +T   A E L 
Sbjct: 18  IAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 77

Query: 166 RTGPIVTLEIAKQG 179
             G IV L + ++ 
Sbjct: 78  EAGSIVRLYVMRRK 91

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
           Q+GRL+  D +L V+   +  +T   A E L   G IV L + ++ 
Sbjct: 46  QDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK 91

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 6e-13
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
           E       +G YI  ++ GG+A+  G+L  G Q+L+ +G  L   T E+    + +    
Sbjct: 41  EIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGE 100

Query: 171 VTLEIAKQ 178
             + +   
Sbjct: 101 AEICVRLD 108

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           Q G+L  G Q+L+ +G  L   T E+    + +      + +   
Sbjct: 64  QTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD 108

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.0 bits (153), Expect = 7e-13
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
                      I I  V+ GG AD  G LQ  D+++ V+G  +  +    A + L ++G 
Sbjct: 30  DNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGK 87

Query: 170 IVTLEIAKQGAIYHGLATLLSQPSPV 195
           I  + + +   +         Q +P+
Sbjct: 88  IAAIVVKRPRKV---------QVAPL 104

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPSPV 347
           G LQ  D+++ V+G  +  +    A + L ++G I  + + +   +         Q +P+
Sbjct: 54  GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV---------QVAPL 104

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
           ++       GI+IK +V    A   GRL+ GD++L ++G+ +   T++   + +      
Sbjct: 27  KDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFK 86

Query: 171 VTLEIA 176
           + LEI 
Sbjct: 87  IELEIQ 92

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
             GRL+ GD++L ++G+ +   T++   + +      + LEI 
Sbjct: 50  LCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ 92

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G+    L IY+K+V   GAA  +GRL+ GDQ++ V+GQSL G+T E+A   L RT   VT
Sbjct: 24  GSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVT 83

Query: 173 LEI 175
           L +
Sbjct: 84  LMV 86

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           ++GRL+ GDQ++ V+GQSL G+T E+A   L RT   VTL +
Sbjct: 45  EDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 86

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 6e-12
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTG 168
           E G G     + I +++ GG A+ +G+L  GDQ++ ++G SLVG+        +  ++  
Sbjct: 18  ESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 77

Query: 169 PIVTLEI 175
             V L I
Sbjct: 78  SRVKLNI 84

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEI 327
           ++G+L  GDQ++ ++G SLVG+        +  ++    V L I
Sbjct: 41  KSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI 84

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.9 bits (145), Expect = 6e-12
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 90  SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDG 149
           S++   V  + + +A    +S +G  ++++ I I  + KG AAD    L  GD +L V+G
Sbjct: 2   SLQRRRVT-VRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60

Query: 150 QSLVGITQEKAAEYLVRTGPIVTLEI 175
           + L   T ++A + L +TG  V LE+
Sbjct: 61  EDLSSATHDEAVQALKKTGKEVVLEV 86

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +Q   L  GD +L V+G+ L   T ++A + L +TG  V LE+
Sbjct: 44  DQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 6e-12
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
                  G+YI++++ G  A A+GRL  GD++L+V+G SL+G+   +A + +   G  + 
Sbjct: 30  HTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMR 89

Query: 173 LEIAKQGAIYHGLATLLSQPS 193
             +AK          + S PS
Sbjct: 90  FLVAKSDVETA--KKIHSGPS 108

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
            +GRL  GD++L+V+G SL+G+   +A + +   G  +   +AK          + S PS
Sbjct: 51  ADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETA--KKIHSGPS 108

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (144), Expect = 9e-12
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
            + +LG YI+ V  G  A+  G L AGD+L++V+G+++   T ++    +      V L 
Sbjct: 23  EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL 81

Query: 175 IAKQGA 180
           +     
Sbjct: 82  VVDPET 87

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
           +   L AGD+L++V+G+++   T ++    +      V L +     
Sbjct: 41  EKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET 87

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 12/64 (18%), Positives = 24/64 (37%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
                      +  +     A+  G LQ GD++L ++G +    T E+A + L       
Sbjct: 31  FATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAH 90

Query: 172 TLEI 175
            + +
Sbjct: 91  KVVL 94

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           + G LQ GD++L ++G +    T E+A + L        + +
Sbjct: 53  RCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVL 94

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
            +    + I  + KG  A   G L+ GD+LL +D   L   + E A + L +   +V L+
Sbjct: 34  RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 93

Query: 175 IAKQ 178
           I K 
Sbjct: 94  IRKD 97

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           ++ G L+ GD+LL +D   L   + E A + L +   +V L+I K 
Sbjct: 52  HRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD 97

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 1e-11
 Identities = 16/72 (22%), Positives = 34/72 (47%)

Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
               +   G    GI++  +V  G A   G LQ  D++++V+G+ L   T ++A E    
Sbjct: 29  RPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT 88

Query: 167 TGPIVTLEIAKQ 178
               + +++ ++
Sbjct: 89  AKEPIVVQVLRR 100

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 10/45 (22%), Positives = 25/45 (55%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
           + G LQ  D++++V+G+ L   T ++A E        + +++ ++
Sbjct: 56  KEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRR 100

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 2e-11
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 80  PGTPPNRLDSSMKSHSVRDMLRQEAK---LSEMSEEGAGQDRLGIYIKSVVKGGAADANG 136
           P    +RL   +  +    M +       L  +  +     RLG +I  V KG  AD  G
Sbjct: 5   PSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVG 64

Query: 137 RLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 177
            L+AGD++L+ +G+ L G T E+    +   ++ P V + +++
Sbjct: 65  HLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR 107

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 329
           +  G L+AGD++L+ +G+ L G T E+    +   ++ P V + +++
Sbjct: 61  DVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR 107

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (142), Expect = 3e-11
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL----VRTG 168
           G       + + +V +GGAA+ +G +  GD+++ ++G+ +   T  +A   L     + G
Sbjct: 37  GVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGG 96

Query: 169 PIVTLEIAKQG 179
             + L +A   
Sbjct: 97  DWIDLVVAVCP 107

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYL----VRTGPIVTLEIAKQG 331
           G +  GD+++ ++G+ +   T  +A   L     + G  + L +A   
Sbjct: 60  GGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP 107

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 110 SEEGAG---QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
            ++G G        + +++V  GG A+  G LQ  D +L+++ + +      + A  +  
Sbjct: 6   GKDGFGFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRS 64

Query: 167 TGPIVTLEI 175
               + L +
Sbjct: 65  CPSEIILLV 73

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 6/42 (14%), Positives = 17/42 (40%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           +   LQ  D +L+++ + +      + A  +      + L +
Sbjct: 32  ERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 73

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 3e-11
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAK 177
            + +KSV+  G A  +G+++ GD ++ ++   ++G T     +    V  G  V L + +
Sbjct: 45  FLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCR 104

Query: 178 Q 178
            
Sbjct: 105 G 105

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQ 330
           Q+G+++ GD ++ ++   ++G T     +    V  G  V L + + 
Sbjct: 59  QDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 116 QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
               GI++  + +GGAA   G LQ GD++L ++G  +     + A   L    P + L +
Sbjct: 35  AGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL 94

Query: 176 AKQGA 180
            ++  
Sbjct: 95  EREAG 99

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
           ++ G LQ GD++L ++G  +     + A   L    P + L + ++  
Sbjct: 52  HRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (139), Expect = 4e-11
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
                  GIY+K+++  GAA+++GR+  GD++L V+G SL G T ++A E L  TG +V 
Sbjct: 31  NTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 90

Query: 173 LEIAKQ 178
           L + K 
Sbjct: 91  LLLEKG 96

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
            +GR+  GD++L V+G SL G T ++A E L  TG +V L + K 
Sbjct: 52  SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 96

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 57.2 bits (138), Expect = 5e-11
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL---VRTGPIVTLEI 175
            GIYI S++KGGA  A+GR++ GD LL+V+  +   ++ + A   L   V     + L +
Sbjct: 29  GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTV 88

Query: 176 AKQ 178
           AK 
Sbjct: 89  AKL 91

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL---VRTGPIVTLEIAKQ 330
            +GR++ GD LL+V+  +   ++ + A   L   V     + L +AK 
Sbjct: 44  ADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL 91

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 5e-11
 Identities = 17/63 (26%), Positives = 36/63 (57%)

Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           ++ +Y+  + + G A  NGR++ GDQ+++++G+S   +T  +A E +   G  V L + +
Sbjct: 35  KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKR 94

Query: 178 QGA 180
              
Sbjct: 95  GTG 97

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
           +NGR++ GDQ+++++G+S   +T  +A E +   G  V L + +   
Sbjct: 51  RNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG 97

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (137), Expect = 8e-11
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G+D  GI+I  ++ GG AD +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+ 
Sbjct: 29  GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII 88

Query: 175 IAKQGAIYH 183
              +   Y 
Sbjct: 89  AQYKPEEYS 97

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH 335
           + +G L+ GDQ+L V+G  L   + E+AA  L   G  VT+    +   Y 
Sbjct: 47  DLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS 97

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.5 bits (136), Expect = 9e-11
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
           G    G+Y+K++   G  D  G L+  D+LL+V+               +  +G  + L 
Sbjct: 28  GLLEKGVYVKNIRPAGPGD-LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV 86

Query: 175 IAK 177
           I++
Sbjct: 87  ISR 89

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 329
             G L+  D+LL+V+               +  +G  + L I++
Sbjct: 46  DLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 116 QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
            D  GI+I  V + G A     ++ GD+LL+V+G +L G    +A E L   G  V + +
Sbjct: 36  GDDEGIFISRVSEEGPAA-RAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 94

Query: 176 AKQ 178
            ++
Sbjct: 95  WRE 97

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 330
               ++ GD+LL+V+G +L G    +A E L   G  V + + ++
Sbjct: 53  ARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 97

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 117 DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
                Y++SV +GG A   G L+ GD L++V+GQ++V +   +    + + G  + +++
Sbjct: 41  FPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 98

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 9/38 (23%), Positives = 23/38 (60%)

Query: 290 LQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           L+ GD L++V+GQ++V +   +    + + G  + +++
Sbjct: 61  LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 98

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (135), Expect = 1e-10
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL----VRTGPIVTLEI 175
            +YI  V+ GG    +GRL+ GDQL+ ++ +S++G++ E+A   +    +R+     +  
Sbjct: 35  LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAF 94

Query: 176 AK 177
            +
Sbjct: 95  IR 96

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYL----VRTGPIVTLEIAK 329
            ++GRL+ GDQL+ ++ +S++G++ E+A   +    +R+     +   +
Sbjct: 48  YKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 96

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
              +     +  ++ GG     G L  GD++ +++G S+   T E+  + L      +T 
Sbjct: 20  KMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF 79

Query: 174 EI 175
           +I
Sbjct: 80  KI 81

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           + G L  GD++ +++G S+   T E+  + L      +T +I
Sbjct: 40  RQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI 81

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
            + +++  I I  +      D +G L  GD +L +DG S+   +  +A + L      V 
Sbjct: 36  TSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVR 95

Query: 173 LEI 175
           LEI
Sbjct: 96  LEI 98

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 15/65 (23%), Positives = 34/65 (52%)

Query: 111 EEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI 170
                + + GI+I  +V GG A++ G L   D++++V+G  + G T ++  + +V     
Sbjct: 30  TASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSN 89

Query: 171 VTLEI 175
           + + +
Sbjct: 90  LIITV 94

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 5e-10
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           GA   +    I ++ +GG+A   G+L+ G  +L+V+G +L G    +AA  +        
Sbjct: 26  GANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD 85

Query: 173 LE 174
            +
Sbjct: 86  RD 87

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 326
           +  G+L+ G  +L+V+G +L G    +AA  +         +
Sbjct: 46  HNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (132), Expect = 5e-10
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 176
            + I  +VKGGAA+ +G L  GD++L+++G  + G    +  + L      +T  + 
Sbjct: 42  SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 98

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA 328
           ++G L  GD++L+++G  + G    +  + L      +T  + 
Sbjct: 56  KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 98

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 5e-10
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
                GI+I  V   GAA  +GRL+ G +LL+V+ QSL+G+T  +A + L   G  +T+ 
Sbjct: 40  DPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99

Query: 175 IAKQG 179
           +    
Sbjct: 100 VCDGF 104

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 6e-10
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
           +G     + + I  +  G  A    +L  GD ++ +DG +   +T  +A   +      +
Sbjct: 18  QGGKDFNMPLTISRITPGSKAA-QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNL 76

Query: 172 TLEIAKQG 179
           +L + K  
Sbjct: 77  SLTLQKSK 84

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 331
              +L  GD ++ +DG +   +T  +A   +      ++L + K  
Sbjct: 39  AQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 8e-10
 Identities = 18/66 (27%), Positives = 29/66 (43%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           GA  +   I +  V   G A   G +Q G+++L ++G+SL G T   A   L +      
Sbjct: 29  GADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQ 88

Query: 173 LEIAKQ 178
             I  +
Sbjct: 89  AVIVTR 94

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 8e-10
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQ 178
           I I +V+  G+AD +GRL  GD+L+ VDG  + G T     + +        V L + ++
Sbjct: 36  ILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95

Query: 179 G 179
            
Sbjct: 96  V 96

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIAKQG 331
           ++GRL  GD+L+ VDG  + G T     + +        V L + ++ 
Sbjct: 49  RDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 8e-10
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 114 AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTL 173
              ++ GIY+  V  G  A   G L+ GDQLL+ +G +L   T+++A   + +    +T+
Sbjct: 37  VSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITI 95

Query: 174 EIAKQGAIYHGLATLLSQPS 193
                  ++   +   S PS
Sbjct: 96  LAQYNPHVHQLSSHSRSGPS 115

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHGLATLLSQPS 345
             L+ GDQLL+ +G +L   T+++A   + +    +T+       ++   +   S PS
Sbjct: 58  AGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGPS 115

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 9e-10
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 113 GAGQDRLGIYIKSVVKGGAAD-ANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIV 171
           G    ++ + +  V  G  AD    RL  GDQ++ ++G+ +   T ++   ++  +    
Sbjct: 28  GGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 87

Query: 172 TLEI 175
           + E+
Sbjct: 88  SGEL 91

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 8/41 (19%), Positives = 21/41 (51%)

Query: 287 NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
             RL  GDQ++ ++G+ +   T ++   ++  +    + E+
Sbjct: 51  VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 91

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
              I S+++GG A+  G ++ G ++++++GQS+V    EK    L      + ++ 
Sbjct: 21  NGIICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 75

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 9/40 (22%), Positives = 21/40 (52%)

Query: 288 GRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 327
           G ++ G ++++++GQS+V    EK    L      + ++ 
Sbjct: 36  GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 75

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 112 EGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI- 170
                  LGI+IKS++ GGAA  +GRL+  DQL+ V+G++L+G +  +A E L R+  + 
Sbjct: 48  SRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSME 107

Query: 171 ------VTLEIAKQ 178
                 + L I ++
Sbjct: 108 GNIRGMIQLVILRR 121

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 7/53 (13%)

Query: 285 NQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI-------VTLEIAKQ 330
            ++GRL+  DQL+ V+G++L+G +  +A E L R+  +       + L I ++
Sbjct: 69  FKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 19/70 (27%), Positives = 32/70 (45%)

Query: 110 SEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP 169
             E      +   I  ++ G  AD   +L+ GD++L V+GQS++ +      + +   G 
Sbjct: 34  RPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGL 93

Query: 170 IVTLEIAKQG 179
            VTL I  Q 
Sbjct: 94  SVTLRIIPQE 103

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G  +  +GIY+  V  G  A+  G  + GDQ+L+V+ +SL  +T  +A +  ++    + 
Sbjct: 29  GGSEHGVGIYVSLVEPGSLAEKEGL-RVGDQILRVNDKSLARVTHAEAVK-ALKGSKKLV 86

Query: 173 LEIAKQGAI 181
           L +   G I
Sbjct: 87  LSVYSAGRI 95

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (124), Expect = 9e-09
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVT 172
            Q+   + I  ++  GAA ++G LQ GD L+ V   +++G T  +  + L  +  G ++ 
Sbjct: 45  IQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQ 104

Query: 173 LEIAKQG 179
           ++  +  
Sbjct: 105 IKAYRGF 111

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
            I +  V + G A+    L+ GD ++ ++GQS   +   +A   + ++   + L++ +  
Sbjct: 31  PIIVTKVTERGKAE-AADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSS 89

Query: 180 A 180
            
Sbjct: 90  G 90

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 8/47 (17%), Positives = 23/47 (48%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
           +   L+ GD ++ ++GQS   +   +A   + ++   + L++ +   
Sbjct: 44  EAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG 90

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
              I  +     A+  G LQ GD+++ ++G      T E+A + L  +     + +
Sbjct: 46  PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 101

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 116 QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI 175
           +D +GIYI  +     A  +GR++ GD++++++G  +    +  A            L  
Sbjct: 45  EDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIA 104

Query: 176 AKQGAIYHGLATLLSQPS 193
             +  +  G     S PS
Sbjct: 105 RPELQLDEGWMDDDSGPS 122

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
           G  +  LGIYI  V  G  A+    L+ GDQ+L+V+G+S + I  ++A   L+++   + 
Sbjct: 40  GGAEYGLGIYITGVDPGSEAE-GSGLKVGDQILEVNGRSFLNILHDEAVR-LLKSSRHLI 97

Query: 173 LEIAKQGAIYHGLATL 188
           L +   G + H   T+
Sbjct: 98  LTVKDVGRLPHARTTV 113

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ 178
             + I  +  G  A     L  GD +L +DG     +T   A + +      + L+I + 
Sbjct: 29  QPLVITRITPGSKAA-AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA 87

Query: 179 GA 180
             
Sbjct: 88  ET 89

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
               L  GD +L +DG     +T   A + +      + L+I +   
Sbjct: 43  AAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET 89

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK 177
           + GI+I  V  G  +     L+ GDQ+++V+G     +  ++A   ++++   +T+ I  
Sbjct: 33  KPGIFISHVKPGSLSA-EVGLEIGDQIVEVNGVDFSNLDHKEAVN-VLKSSRSLTISIVA 90

Query: 178 QGA 180
              
Sbjct: 91  AAG 93

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 115 GQDRLGIYIKS------VVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VR 166
           G    G  I        V +         L  GD +++++ Q++  ++  +  + L    
Sbjct: 19  GAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP 78

Query: 167 TGPIVTLEIAKQG 179
            G   +L I +  
Sbjct: 79  IGSETSLIIHRGS 91

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYL--VRTGPIVTLEIAKQG 331
               L  GD +++++ Q++  ++  +  + L     G   +L I +  
Sbjct: 44  GCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGS 91

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 109 MSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG 168
            +  G    +LGI+I  V+    A     LQ GDQ+L V+      I   KA E +++T 
Sbjct: 31  FNIRGGKASQLGIFISKVIPDSDAH-RAGLQEGDQVLAVNDVDFQDIEHSKAVE-ILKTA 88

Query: 169 PIVTLEI 175
             +++ +
Sbjct: 89  REISMRV 95

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IV 171
           G+      + I  + KG A++ +  +Q GD++L++ G ++ G+T+ +A   +       V
Sbjct: 51  GSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPV 110

Query: 172 TLEIAKQGA 180
           T+ I ++  
Sbjct: 111 TIVIRRKSL 119

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 115 GQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE 174
              +  + I  +++GGAA+ +G +QAGD +L V+ + LV ++ + A E L        + 
Sbjct: 22  RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV 81

Query: 175 I---AKQGAIYHGLATLLSQPSPVMTR 198
           +     +G   H   T     +P   R
Sbjct: 82  LILRGPEGFTTHLETTFTGDGTPKTIR 108

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEI 175
           GI+++ V     A   G L+ GDQ+L+++G++  G + +KA + L +  G  +T+ I
Sbjct: 26  GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 81

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 4e-07
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 105 KLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL 164
            + + S    G       I S+VK  +A     L     + +++GQ+++G+   + A+ L
Sbjct: 9   TMHKDSTGHVGFIFKNGKITSIVKDSSAA-RNGLLTEHNICEINGQNVIGLKDSQIADIL 67

Query: 165 VRTGPIVTLEI 175
             +G +VT+ I
Sbjct: 68  STSGTVVTITI 78

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
            + I S+  GG A     ++ GD +L +DG S  G+T  +A   +      + + + +  
Sbjct: 30  PLTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS 88

Query: 180 A 180
           A
Sbjct: 89  A 89

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 286 QNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA 332
               ++ GD +L +DG S  G+T  +A   +      + + + +  A
Sbjct: 43  SQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA 89

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 113 GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT 172
              +D LG  I  VV GGAA   G +  G  + KVD + +       AA      G  V 
Sbjct: 10  TNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRSKAPGATVA 68

Query: 173 LEIAKQG 179
           L      
Sbjct: 69  LTFQDPS 75

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEIAKQ 178
            + + +   GG A+     +AGD ++ VDG ++ G++    ++ L       V + +   
Sbjct: 20  DVVVLTPAPGGPAE-KAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP 78

Query: 179 GA 180
           GA
Sbjct: 79  GA 80

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 95  SVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVG 154
            +  +        ++ E      + G+ I  V+ G  A   G L+ GD +L +  Q +  
Sbjct: 7   MMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN 65

Query: 155 ITQEKAAEYLVRTGPIVTLEIAKQG 179
                 A   VRT   + ++I +  
Sbjct: 66  AEDVYEA---VRTQSQLAVQIRRGR 87

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 121 IYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAK 177
           + +  +    +A      + GD ++ + G     +T  +  + L   G   V +++  
Sbjct: 38  VQVHFLDPHCSAS-LAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 36.9 bits (85), Expect = 8e-04
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 100 LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEK 159
           + Q  +LS++  +       G  +         ++ G LQ GD  + ++G  L       
Sbjct: 3   IFQYVRLSQVKRDDKVL---GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMN 58

Query: 160 AAEYLVRTGPIVTLEIAKQG 179
                +     ++L + + G
Sbjct: 59  TLFQSMNEMTEMSLTVERDG 78

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG 179
           G+ I SVV G  A     L  G  +  ++G     +T   AA   +  G ++ +   +  
Sbjct: 4   GVQIDSVVPGSPAS--KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGT 61

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 107 SEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR 166
              ++ G      GI +  V   G A   G  Q  D ++ VD +  +   +       +R
Sbjct: 14  PLHAQGGGIDQLQGIVVNEVSPDGPAANAGI-QVNDLIISVDNKPAISALETMDQVAEIR 72

Query: 167 TGPIVTLEIAKQGAIYHGLATLLSQPS 193
            G ++ + + +         T+   P+
Sbjct: 73  PGSVIPVVVMRDDKQLTLQVTIQEYPA 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	684
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.71
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.71
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.7
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.69
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.69
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.68
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.68
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.68
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.67
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.66
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.65
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.64
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.64
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.64
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.64
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.63
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.63
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.63
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.61
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.61
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.61
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.6
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.6
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.6
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.6
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.6
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.58
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.58
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.58
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.58
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.57
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.57
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.57
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.57
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.56
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.56
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.55
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.55
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.54
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.54
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.53
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.53
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.53
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.52
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.52
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.48
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.48
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.48
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.47
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.46
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.44
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.41
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.41
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.39
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.38
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.36
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.35
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.34
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.33
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.31
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.3
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.29
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.28
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.28
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.26
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.26
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.25
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.24
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.21
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.21
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.2
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.19
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.18
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.17
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.17
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.17
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.16
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.16
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.16
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.14
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.14
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.14
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.13
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.12
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.11
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.11
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.1
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.07
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.06
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.06
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.06
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.05
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.05
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.04
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.04
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.03
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.03
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.02
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.02
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.02
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.01
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.0
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.93
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.91
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.9
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.88
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.87
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.84
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.68
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.44
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.3
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.27
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.24
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.07
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.04
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.0
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.91
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.87
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	97.75
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	97.52
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	97.39
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.33
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.31
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.29

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6e-18  Score=146.17  Aligned_cols=87  Identities=61%  Similarity=0.884  Sum_probs=78.6

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEE
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT  172 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~  172 (684)
                      .+++......||||+|.||.+......||||+.|.|||||+++|+|++||+|++|||+++.+++|.+|+.+|+++++.|+
T Consensus         5 i~~v~l~~~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~v~   84 (92)
T d1t2ma1           5 IITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVT   84 (92)
T ss_dssp             EEEEEEECSSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSEEE
T ss_pred             EEEEEEeCCCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCeEE
Confidence            34444455678999999998877677899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecC
Q psy2533         173 LEIAKQG  179 (684)
Q Consensus       173 LvV~R~~  179 (684)
                      |+|.|+.
T Consensus        85 L~v~R~g   91 (92)
T d1t2ma1          85 LEVAKQG   91 (92)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999975

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.6e-18  Score=145.97  Aligned_cols=87  Identities=26%  Similarity=0.430  Sum_probs=75.3

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCC------CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHH
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAG------QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL  164 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~------~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lL  164 (684)
                      .++|.+.|.++.+|||+|+||.+..      ....||||+.|.++|||+++|+|++||+|++|||+++.+++|++|+.+|
T Consensus         2 pr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l   81 (96)
T d2fcfa1           2 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI   81 (96)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHH
Confidence            5789999999999999999986543      2245899999999999999999999999999999999999999999999


Q ss_pred             HcCCCEEEEEEEe
Q psy2533         165 VRTGPIVTLEIAK  177 (684)
Q Consensus       165 k~sg~~V~LvV~R  177 (684)
                      +++++.|+|+|+|
T Consensus        82 k~~~~~v~L~V~r   94 (96)
T d2fcfa1          82 RKAGNPVVFMVQS   94 (96)
T ss_dssp             HTCCSSEEEEEEC
T ss_pred             HcCCCeEEEEEEE
Confidence            9999999999986

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.1e-17  Score=142.60  Aligned_cols=87  Identities=32%  Similarity=0.472  Sum_probs=77.9

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..|.+.|. ..||||+|.||.+...  ...+|||+.|.|||||+++|+|++||+|++|||+++.+++|.+|+.+|+++++
T Consensus         3 ~~V~L~k~-~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~   81 (92)
T d2fe5a1           3 MEVNLLKG-PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD   81 (92)
T ss_dssp             EEEEEECC-TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCS
T ss_pred             EEEEEEEC-CCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCC
Confidence            46777764 5789999999876542  45689999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .|+|+|.|+.
T Consensus        82 ~v~L~v~Rpg   91 (92)
T d2fe5a1          82 MVYLKVAKPG   91 (92)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEECCC
Confidence            9999999865

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.7e-17  Score=143.10  Aligned_cols=88  Identities=25%  Similarity=0.380  Sum_probs=78.4

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ++|++.| .+.||||+|.||.+.+.  ...+|||+.|.+||||+++|+|++||+|++|||+++.+++|.+|+.+|+++++
T Consensus         3 ~~V~l~k-~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~   81 (93)
T d1rgra_           3 EEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS   81 (93)
T ss_dssp             EEEEEEC-CSSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTT
T ss_pred             EEEEEEe-CCCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4677765 56789999999876543  45689999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .|+|+|.|..+
T Consensus        82 ~v~L~v~R~~p   92 (93)
T d1rgra_          82 IVRLYVMRRKP   92 (93)
T ss_dssp             EEEEEEECSCC
T ss_pred             EEEEEEEeCCC
Confidence            99999998754

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.7e-17  Score=142.18  Aligned_cols=87  Identities=21%  Similarity=0.364  Sum_probs=78.8

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCC---CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAG---QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~---~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ..+|.+.|.++.+|||+|.||.+..   ....+|||+.|.|||||+++|+|++||+|++|||+++.+++|++|+.+|+++
T Consensus         4 i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~   83 (94)
T d1ihja_           4 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA   83 (94)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4578888888899999999986543   2345899999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEe
Q psy2533         168 GPIVTLEIAK  177 (684)
Q Consensus       168 g~~V~LvV~R  177 (684)
                      ++.|+|+|.|
T Consensus        84 ~~~v~L~V~R   93 (94)
T d1ihja_          84 DFKIELEIQT   93 (94)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            9999999987

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3.3e-17  Score=141.20  Aligned_cols=87  Identities=29%  Similarity=0.347  Sum_probs=80.1

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      .+.++|++.|.+.++|||+|.||.+..   .++||..|.|+|||+++|.|++||+|++|||+++.+++|++|+.+|++++
T Consensus         3 ~q~r~V~l~k~~~~~lG~~i~gg~~~~---~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~   79 (90)
T d1qava_           3 LQRRRVTVRKADAGGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG   79 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             ceEEEEEEEeCCCCccCEEEEccccCC---CCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            456889999988889999999986643   58999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                      ..|+|+|.|-
T Consensus        80 ~~v~l~v~~~   89 (90)
T d1qava_          80 KEVVLEVKYM   89 (90)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEe
Confidence            9999999874

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.6e-17  Score=144.06  Aligned_cols=92  Identities=23%  Similarity=0.376  Sum_probs=82.5

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ....+|+|.|.. .+|||+|.+|.+......+|||..|.++|||+++|+|++||+||+|||+++.+++|.+|+.+|++++
T Consensus         7 g~~~~V~l~k~~-~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~   85 (110)
T d1um1a_           7 GYVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CCEEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CCEEEEEEEECC-CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456777787654 5899999999877666779999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCcc
Q psy2533         169 PIVTLEIAKQGAI  181 (684)
Q Consensus       169 ~~V~LvV~R~~~~  181 (684)
                      ..|.|+|.|....
T Consensus        86 ~~v~l~v~r~~~~   98 (110)
T d1um1a_          86 KKMRFLVAKSDVE   98 (110)
T ss_dssp             SEEEEEEECCCHH
T ss_pred             CeEEEEEEeCCCC
Confidence            9999999887643

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.4e-17  Score=140.46  Aligned_cols=88  Identities=36%  Similarity=0.534  Sum_probs=76.8

Q ss_pred             eEEEEEecCCCcccEEEEecc---CCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEE---GAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~---~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      .+|++.|. ..+|||+|+|+.   +......+|||++|.|||||+++|+|++||+|++|||+++.+++|.+|+.+|++++
T Consensus         4 ~~V~L~k~-~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~   82 (94)
T d1wf8a1           4 FPVELEKD-EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK   82 (94)
T ss_dssp             EEEEEECB-TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC
T ss_pred             EEEEEEeC-CCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45666664 568999999863   23345668999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      +.|+|+|.|+.|
T Consensus        83 ~~v~L~V~R~kP   94 (94)
T d1wf8a1          83 GNVRFVIGREKP   94 (94)
T ss_dssp             SEEEEEEEEECC
T ss_pred             CeEEEEEEeCCC
Confidence            999999998753

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.4e-17  Score=143.25  Aligned_cols=89  Identities=17%  Similarity=0.305  Sum_probs=77.8

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCC-----CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHH
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAG-----QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL  164 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~-----~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lL  164 (684)
                      ...+|+|.| ...+|||+|+||.+..     ....+|||+.|.|+|||+++|+|++||+||+|||+++.+++|.+|+.+|
T Consensus         8 ~~~~V~l~k-~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~l   86 (107)
T d1uhpa_           8 KSLTLVLHR-DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             EEEEEEECC-SSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEEE-CCCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHH
Confidence            345666655 4578999999986543     2456899999999999999999999999999999999999999999999


Q ss_pred             HcCCCEEEEEEEecC
Q psy2533         165 VRTGPIVTLEIAKQG  179 (684)
Q Consensus       165 k~sg~~V~LvV~R~~  179 (684)
                      +++++.|.|+|.|..
T Consensus        87 k~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          87 KTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHCCSSEEEEEEECC
T ss_pred             HhCCCcEEEEEEECC
Confidence            999999999999865

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.9e-17  Score=146.37  Aligned_cols=91  Identities=26%  Similarity=0.387  Sum_probs=81.9

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC------CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ------DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~------~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      ..++|+|.|.++.+|||+|+||.+...      ...+|||+.|.|+|||+++|+|++||+||+|||++|.+++|++|+.+
T Consensus         9 ~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   88 (111)
T d1ujua_           9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             CeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHH
Confidence            457799999989999999999865432      34689999999999999999999999999999999999999999999


Q ss_pred             HHcCCCEEEEEEEecCc
Q psy2533         164 LVRTGPIVTLEIAKQGA  180 (684)
Q Consensus       164 Lk~sg~~V~LvV~R~~~  180 (684)
                      |+++++.|+|+|.|...
T Consensus        89 lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          89 LRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HSSCSSEEEECCCCCCC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            99999999999988753

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.1e-16  Score=144.26  Aligned_cols=89  Identities=19%  Similarity=0.306  Sum_probs=78.3

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC-C
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-P  169 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg-~  169 (684)
                      ..+|.+.| ...||||+|+||.+......+|||..|.+||+|+++|+|++||+||+|||+++.+++|++|+.+|+.++ .
T Consensus        30 ~~~V~l~k-~~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~  108 (130)
T d1i16a_          30 VCTVTLEK-MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG  108 (130)
T ss_dssp             EEEEEEET-TSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSS
T ss_pred             EEEEEEEe-CCCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCC
Confidence            44555554 567899999999887666779999999999999999999999999999999999999999999999875 4


Q ss_pred             EEEEEEEecCc
Q psy2533         170 IVTLEIAKQGA  180 (684)
Q Consensus       170 ~V~LvV~R~~~  180 (684)
                      .|.|+|.|+..
T Consensus       109 ~v~l~v~r~~~  119 (130)
T d1i16a_         109 PVTIVIRRKSL  119 (130)
T ss_dssp             EEEEEEEEESS
T ss_pred             eEEEEEEcCCC
Confidence            89999998754

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.4e-16  Score=138.68  Aligned_cols=89  Identities=30%  Similarity=0.442  Sum_probs=77.3

Q ss_pred             CceEEEEEecCCCcccEEEEeccC-----CCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHH
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEG-----AGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL  164 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~-----~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lL  164 (684)
                      ...+|++.|. ..+|||+|.++..     ......+|||+.|.|||||+++|+|++||+|++|||+++.+++|.+|+.+|
T Consensus         4 ~~~~V~L~k~-~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~l   82 (99)
T d1ozia_           4 DTFEVELAKT-DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL   82 (99)
T ss_dssp             CEEEEEEECC-SSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CEEEEEEEEC-CCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHH
Confidence            3567888764 5689999986533     233456899999999999999999999999999999999999999999999


Q ss_pred             HcCCCEEEEEEEecC
Q psy2533         165 VRTGPIVTLEIAKQG  179 (684)
Q Consensus       165 k~sg~~V~LvV~R~~  179 (684)
                      ++++..|+|+|.|..
T Consensus        83 k~~~~~v~L~v~R~~   97 (99)
T d1ozia_          83 RNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHSCSEEEEEEECCC
T ss_pred             HCCCCeEEEEEEeCC
Confidence            999999999998864

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.66  E-value=3.9e-17  Score=141.23  Aligned_cols=86  Identities=27%  Similarity=0.386  Sum_probs=76.4

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC---C
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT---G  168 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s---g  168 (684)
                      .+|++.++...+|||+|.||.+.. .+.||||+.|.|||||+++|+|++||+|++|||+++.+++|++|+.+|+.+   .
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~-~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~   81 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKP   81 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTT-SCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSS
T ss_pred             EEEEEEeCCCCccCEEEEccCCCC-CCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCC
Confidence            467787877889999999987643 457899999999999999999999999999999999999999999999864   4


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                      +.|.|+|.|.
T Consensus        82 ~~v~L~V~R~   91 (92)
T d2f0aa1          82 GPIVLTVAKL   91 (92)
T ss_dssp             SCEEEEEECC
T ss_pred             CcEEEEEEeC
Confidence            5799999885

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.3e-16  Score=139.24  Aligned_cols=90  Identities=24%  Similarity=0.280  Sum_probs=81.0

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ....+|++.|..+.+|||++.+|.+... ..++||+.|.|||||+++|+|++||+||+|||+++.+++|.+|+.+|++++
T Consensus         9 ~~~~~V~l~k~~~~~lG~~v~~~~~~~~-~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~   87 (99)
T d1p1da2           9 SGTFHVKLPKKHSVELGITISSPSSRKP-GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE   87 (99)
T ss_dssp             SSCEEEEECCCSSCCCCCEEECSCSSST-TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCT
T ss_pred             CCcEEEEEEECCCCccCEEEEecCCCCC-CCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCC
Confidence            4567888988889999999998865442 347999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      +.|+|+|.|+.
T Consensus        88 ~~v~L~V~r~~   98 (99)
T d1p1da2          88 DLVKLKIRKDE   98 (99)
T ss_dssp             TCEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence            99999998864

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-16  Score=137.28  Aligned_cols=85  Identities=39%  Similarity=0.526  Sum_probs=76.8

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .++|++.| ...+|||+|.||.+...+..++||+.|.++|+|+++|+|++||+|++|||+++.+++|.+|+.+|+++++.
T Consensus         3 ~~~V~l~K-~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~   81 (88)
T d2fnea1           3 CKSITLER-GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGT   81 (88)
T ss_dssp             EEEEEECC-BTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             EEEEEEEe-CCCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            46777765 45689999999877666677999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEE
Q psy2533         171 VTLEIA  176 (684)
Q Consensus       171 V~LvV~  176 (684)
                      |+|+|.
T Consensus        82 v~L~Vl   87 (88)
T d2fnea1          82 VTLMVL   87 (88)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999885

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=140.33  Aligned_cols=89  Identities=19%  Similarity=0.235  Sum_probs=77.9

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+.|.+.|..+.+|||+|.||.+..  ..++||..|.+||||+++|+|++||+|++|||.++.+++|++|+.+|+.++
T Consensus         7 ~~~~~v~l~k~~~~~lG~~i~gg~~~~--~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~   84 (107)
T d1x6da1           7 DGIHVTILHKEEGAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR   84 (107)
T ss_dssp             TTEEEEEEECCTTSCCSEEEECCSSSS--CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred             CCcEEEEEEcCCCCccCEEEeeccCCC--CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCC
Confidence            356778888888899999999987643  458999999999999999999999999999999999999999999999998


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      ..+.+++.++.
T Consensus        85 ~~~~l~v~~r~   95 (107)
T d1x6da1          85 EPRQAVIVTRK   95 (107)
T ss_dssp             SSSEEEEEEEC
T ss_pred             CCEEEEEEECC
Confidence            77766666543

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.8e-16  Score=137.06  Aligned_cols=89  Identities=26%  Similarity=0.327  Sum_probs=77.6

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCC-----CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAG-----QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~-----~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      .....+.+.+..+.+|||+|+||.+..     ..+.||||+.|.|+|||++  +|++||+||+|||+++.+++|.+|+.+
T Consensus         8 ~~~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~   85 (103)
T d2h3la1           8 LAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSL   85 (103)
T ss_dssp             CEEEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             cccEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHH
Confidence            445567777777889999999996643     2356899999999999974  599999999999999999999999999


Q ss_pred             HHcCCCEEEEEEEecC
Q psy2533         164 LVRTGPIVTLEIAKQG  179 (684)
Q Consensus       164 Lk~sg~~V~LvV~R~~  179 (684)
                      |+++++.++|+|.|+.
T Consensus        86 l~~~~~~v~L~V~R~~  101 (103)
T d2h3la1          86 LKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHCCSEEEEEEEEEE
T ss_pred             HHhCCCeEEEEEEEEC
Confidence            9999999999999864

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.2e-16  Score=139.42  Aligned_cols=89  Identities=21%  Similarity=0.432  Sum_probs=77.1

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCC---CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAG---QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~---~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      .+.+.+. +...+|||+|.||.+..   ....+|||..|.|+|||+++|+|++||+||+|||+++.+++|.+|+.+|+++
T Consensus         8 ~~~v~l~-k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~   86 (105)
T d1whaa_           8 RHVACLA-RSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA   86 (105)
T ss_dssp             EEEEEEC-CCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred             CEEEEEE-ECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcC
Confidence            3444444 45678999999987643   2456899999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      ++.|+|+|.|...
T Consensus        87 ~~~v~l~v~R~~~   99 (105)
T d1whaa_          87 SPTIALLLEREAG   99 (105)
T ss_dssp             CSCEEEEEEECCC
T ss_pred             CCeEEEEEEECCC
Confidence            9999999998753

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.9e-16  Score=137.49  Aligned_cols=92  Identities=21%  Similarity=0.294  Sum_probs=82.1

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCC----CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHH
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQ----DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL  164 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~----~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lL  164 (684)
                      .....|+|.|.++.+|||+|.+|.+...    ...++||.+|.|||||+++|+|++||+|++|||+++.+++|++|+.+|
T Consensus         9 ~~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll   88 (114)
T d1uewa_           9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI   88 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHH
T ss_pred             ceeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHH
Confidence            3567888999899999999999866542    245799999999999999999999999999999999999999999999


Q ss_pred             HcCCCEEEEEEEecCc
Q psy2533         165 VRTGPIVTLEIAKQGA  180 (684)
Q Consensus       165 k~sg~~V~LvV~R~~~  180 (684)
                      ++++..|+|+|.|...
T Consensus        89 ~~~~~~v~l~V~r~~~  104 (114)
T d1uewa_          89 KDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HHTTTEEEEEECCCSC
T ss_pred             HcCCCeEEEEEEeCCC
Confidence            9999999999988654

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.7e-16  Score=134.22  Aligned_cols=90  Identities=26%  Similarity=0.425  Sum_probs=78.1

Q ss_pred             CCCCceEEEEEecCCCcccEEEEeccCCC---CCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHH
Q psy2533          87 LDSSMKSHSVRDMLRQEAKLSEMSEEGAG---QDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEY  163 (684)
Q Consensus        87 ~~s~~~~V~v~k~~~~GLGfsI~GG~~~~---~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~l  163 (684)
                      ......++++.| ...+|||+|.||.+..   ....+|||+.|.+||||+++| |++||+|++|||+++.+++|.+|+.+
T Consensus         5 ~~~~~~~v~l~k-~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~   82 (97)
T d1x5qa1           5 IEEEELTLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA   82 (97)
T ss_dssp             CCCEEEEEEEEC-SSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cCCeEEEEEEEe-CCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHH
Confidence            344556667666 4568999999987543   245689999999999999999 99999999999999999999999999


Q ss_pred             HHcCCCEEEEEEEec
Q psy2533         164 LVRTGPIVTLEIAKQ  178 (684)
Q Consensus       164 Lk~sg~~V~LvV~R~  178 (684)
                      |++++..|+|+|.|+
T Consensus        83 l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          83 LRGAGTAVQMRVWRE   97 (97)
T ss_dssp             HHSCCSEEEEEEEEC
T ss_pred             HhCCCCEEEEEEEEC
Confidence            999999999999985

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=3.9e-16  Score=137.42  Aligned_cols=89  Identities=28%  Similarity=0.404  Sum_probs=79.0

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...++|++.| ...+|||+|.+|.+.    .|+||+.|.+||||+++|+|++||+|++|||+++.+++|.+|+.+|++++
T Consensus         8 ~~~r~V~l~k-~~~glG~~i~~~~~~----~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   82 (102)
T d1tp5a1           8 REPRRIVIHR-GSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   82 (102)
T ss_dssp             CSCEEEEEEC-TTSCCCEEEEECGGG----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCCEEEEEEe-CCCcccEEEEeccCC----CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCC
Confidence            3457888877 467899999987543    48999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCccc
Q psy2533         169 PIVTLEIAKQGAIY  182 (684)
Q Consensus       169 ~~V~LvV~R~~~~~  182 (684)
                      +.++|+|.|.+..+
T Consensus        83 ~~v~L~v~~~~~~~   96 (102)
T d1tp5a1          83 QTVTIIAQYKPEEY   96 (102)
T ss_dssp             SEEEEEEEECHHHH
T ss_pred             CeEEEEEEECCccc
Confidence            99999999876543

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-16  Score=141.93  Aligned_cols=83  Identities=28%  Similarity=0.436  Sum_probs=74.7

Q ss_pred             EEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CCEEEE
Q psy2533          96 VRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTL  173 (684)
Q Consensus        96 v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~~V~L  173 (684)
                      +.++.+.+|||+|.||.+...+..||||..|.+||||+++|+|++||+||+|||.++.+++|++|+.+|+++  +..|+|
T Consensus        24 ~~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l  103 (108)
T d2cssa1          24 MPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEI  103 (108)
T ss_dssp             CSSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEE
T ss_pred             EecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEE
Confidence            334567899999999988777778999999999999999999999999999999999999999999999976  567999


Q ss_pred             EEEec
Q psy2533         174 EIAKQ  178 (684)
Q Consensus       174 vV~R~  178 (684)
                      +|.|.
T Consensus       104 ~v~RP  108 (108)
T d2cssa1         104 IVSRP  108 (108)
T ss_dssp             EEEEC
T ss_pred             EEeCc
Confidence            98873

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.3e-15  Score=133.43  Aligned_cols=88  Identities=19%  Similarity=0.262  Sum_probs=79.2

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCC---------CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHH
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQ---------DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKA  160 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~---------~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eA  160 (684)
                      .+++|.+.|+++.+|||+|.||.....         ...++||..|.|||||+++| |++||+|++|||+++.+++|.++
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~ev   83 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQV   83 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHH
Confidence            467899999999999999999865431         23479999999999999999 99999999999999999999999


Q ss_pred             HHHHHcCCCEEEEEEEec
Q psy2533         161 AEYLVRTGPIVTLEIAKQ  178 (684)
Q Consensus       161 V~lLk~sg~~V~LvV~R~  178 (684)
                      +.+|++++..|+|+|.+.
T Consensus        84 v~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          84 VNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEec
Confidence            999999999999999875

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=138.61  Aligned_cols=88  Identities=28%  Similarity=0.421  Sum_probs=78.9

Q ss_pred             CCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          88 DSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        88 ~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ....++|.+.+..+.+|||+|.||.+..   .||||+.|.|||||+++| |++||+||+|||+++.+++|++|+++|+++
T Consensus        18 ~~~~~~v~l~~~~~~~lGf~i~gg~~~~---~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~   93 (128)
T d1uf1a_          18 GGDEKKVNLVLGDGRSLGLTIRGGAEYG---LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS   93 (128)
T ss_dssp             CSSEEEEEEECCSSCCCCEEEECCTTTT---CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             CCCeEEEEEEECCCCccCEEEEeeccCC---CCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            3567889999998999999999987754   589999999999999999 999999999999999999999999999987


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      + .+.|+|.+...
T Consensus        94 ~-~v~l~v~~~~~  105 (128)
T d1uf1a_          94 R-HLILTVKDVGR  105 (128)
T ss_dssp             S-EEEEEEECCSC
T ss_pred             C-cEEEEEEECCc
Confidence            4 78899877654

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.3e-15  Score=132.20  Aligned_cols=86  Identities=28%  Similarity=0.370  Sum_probs=76.2

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      ..+|.+.| .+++|||+|.||.+..   .++||..|.++|||+++|+|++||+|++|||+++.+++|.+|+.+|+++++.
T Consensus         4 i~tV~l~k-~~~~lG~~i~g~~~~~---~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~   79 (95)
T d1n7ea_           4 IYTVELKR-YGGPLGITISGTEEPF---DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET   79 (95)
T ss_dssp             EEEEEEEC-TTSCCCEEEECCSSTT---SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             EEEEEEEE-CCCcEeEEEEecccCC---CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            45667755 5789999999876533   4799999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCc
Q psy2533         171 VTLEIAKQGA  180 (684)
Q Consensus       171 V~LvV~R~~~  180 (684)
                      |.|+|.|...
T Consensus        80 v~l~v~r~~~   89 (95)
T d1n7ea_          80 VTLKIKKQTD   89 (95)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEECCC
Confidence            9999988753

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.1e-16  Score=131.66  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=71.9

Q ss_pred             EEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEE
Q psy2533          95 SVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE  174 (684)
Q Consensus        95 ~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~Lv  174 (684)
                      +|...++.+|||+|.||.+..   .++||..|.+||||++.| |++||+|++|||+++.+++|.+|+.+|+++++.|+|+
T Consensus         4 ~V~l~~~~~~Gf~i~gg~~~~---~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~   79 (85)
T d1rgwa_           4 SVTLTGPGPWGFRLQGGKDFN---MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT   79 (85)
T ss_dssp             EEEECCSSCCCEEECCCGGGT---SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred             EEEecCCCCCCEEEEeecCCC---CCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            334456789999999987643   479999999999999866 9999999999999999999999999999999999999


Q ss_pred             EEecC
Q psy2533         175 IAKQG  179 (684)
Q Consensus       175 V~R~~  179 (684)
                      |.|..
T Consensus        80 V~R~~   84 (85)
T d1rgwa_          80 LQKSK   84 (85)
T ss_dssp             EESCC
T ss_pred             EEECC
Confidence            98864

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.9e-15  Score=130.21  Aligned_cols=85  Identities=18%  Similarity=0.248  Sum_probs=76.1

Q ss_pred             CceEEEEEecC-CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          90 SMKSHSVRDML-RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        90 ~~~~V~v~k~~-~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ....+.+.|.. ..+|||+|.+|.+.    .++||+.|.+||||+++| |++||+|++|||+++.+++|.+|+.+|+.++
T Consensus         6 e~~~v~l~k~~~~~~~Gf~i~~~~~~----~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~   80 (91)
T d1m5za_           6 ELHKVTLYKDSGMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG   80 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             ceEEEEEEECCCCCceeEEEeccCCC----CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCC
Confidence            45677788766 46899999987553    489999999999999999 9999999999999999999999999999999


Q ss_pred             CEEEEEEEecC
Q psy2533         169 PIVTLEIAKQG  179 (684)
Q Consensus       169 ~~V~LvV~R~~  179 (684)
                      +.|+|+|.|.+
T Consensus        81 ~~v~L~v~R~P   91 (91)
T d1m5za_          81 NKLDLVISRNP   91 (91)
T ss_dssp             TEEEEEEEECC
T ss_pred             CEEEEEEEECc
Confidence            99999999863

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.8e-15  Score=134.56  Aligned_cols=90  Identities=21%  Similarity=0.220  Sum_probs=81.3

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      +....|.+.|.++.+|||+|+++....  ..++||..|.|+|+|+++|+|++||+|++|||++|.+++|.+|+.+|++++
T Consensus        14 ~~p~~V~l~k~~~~~lGi~i~~~~~~~--~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~   91 (117)
T d1v62a_          14 SGPLMVEIVKTPGSALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS   91 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS
T ss_pred             CCCEEEEEEcCCCCCcCEEEEeeccCC--CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCC
Confidence            445778898888889999999886543  468999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..|+|+|.+...
T Consensus        92 ~~v~l~v~~~~~  103 (117)
T d1v62a_          92 EKVRLEILPVPQ  103 (117)
T ss_dssp             SEEEEEECCBTT
T ss_pred             CcEEEEEEECCC
Confidence            999999988654

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.1e-15  Score=135.24  Aligned_cols=83  Identities=22%  Similarity=0.269  Sum_probs=73.1

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      ..+|.+.|...+||||+|.++.+.    .+|||+.|.+||||+++|+|++||+|++|||+++.+++|.+|+.+|+.++..
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~~----~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~   77 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVSK----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSS----SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSS
T ss_pred             eEEEEEEECCCCcEeEEEEeecCC----CCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCC
Confidence            357889999999999999987553    4899999999999999999999999999999999999999999999998765


Q ss_pred             EEEEEEe
Q psy2533         171 VTLEIAK  177 (684)
Q Consensus       171 V~LvV~R  177 (684)
                      +.+.+.+
T Consensus        78 ~~~~l~~   84 (112)
T d1qaua_          78 THVVLIL   84 (112)
T ss_dssp             SEEEEEE
T ss_pred             cEEEEEE
Confidence            5554443

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.2e-15  Score=134.52  Aligned_cols=85  Identities=22%  Similarity=0.310  Sum_probs=76.2

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...++|.|.|.++.+|||+|.||.+..   .+|||+.|.++|||+++| |++||+||+|||+++.+++|++|+.+|+.+.
T Consensus        14 ~~pr~V~l~r~~~~~lGf~i~gg~~~~---~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~   89 (104)
T d1wi2a_          14 FLPRIVTLKKPPGAQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR   89 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSC---CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS
T ss_pred             CcCEEEEEEeCCCCCcceEEEccccCC---CCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            345789998888899999999987643   579999999999999999 9999999999999999999999999999875


Q ss_pred             CEEEEEEEec
Q psy2533         169 PIVTLEIAKQ  178 (684)
Q Consensus       169 ~~V~LvV~R~  178 (684)
                       .++|+|.|.
T Consensus        90 -~v~l~V~~~   98 (104)
T d1wi2a_          90 -EISMRVRFF   98 (104)
T ss_dssp             -SEEEEEECC
T ss_pred             -eEEEEEEEC
Confidence             689998764

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-15  Score=130.07  Aligned_cols=81  Identities=17%  Similarity=0.260  Sum_probs=75.1

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .+.|.+.|.++++|||+|.++.+     .++||..|.+||||+++|+|++||+|++|||.++.+++|.+|+.+|+++++.
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~-----~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~   76 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNEL-----NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGS   76 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCG-----GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCC-----CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            47899999999999999987532     4799999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEE
Q psy2533         171 VTLEIA  176 (684)
Q Consensus       171 V~LvV~  176 (684)
                      |+|+|.
T Consensus        77 v~L~i~   82 (88)
T d1kwaa_          77 ITFKIV   82 (88)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.7e-15  Score=128.52  Aligned_cols=84  Identities=24%  Similarity=0.327  Sum_probs=74.8

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      -.++|++.|. ..||||+|.++...    .++||..|.|||||+++| |++||+|++|||.++.+++|++|+.+|+++++
T Consensus         3 ~Pr~v~l~k~-~~g~Gf~i~~~~~~----~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~   76 (91)
T d1g9oa_           3 LPRLCCLEKG-PNGYGFHLHGEKGK----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALN   76 (91)
T ss_dssp             CCEEEEEECB-TTBCCEEEEECTTC----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSS
T ss_pred             CCEEEEEEEC-CCeeeEEEEecCCC----CCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3577888776 56799999987543    479999999999999999 99999999999999999999999999999999


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .|+|+|.+..
T Consensus        77 ~v~L~v~~~~   86 (91)
T d1g9oa_          77 AVRLLVVDPE   86 (91)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEECCC
Confidence            9999997754

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.3e-15  Score=139.07  Aligned_cols=86  Identities=33%  Similarity=0.512  Sum_probs=75.1

Q ss_pred             EEEEecCCCcccEEEEeccCCCCC-cccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-----
Q psy2533          94 HSVRDMLRQEAKLSEMSEEGAGQD-RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-----  167 (684)
Q Consensus        94 V~v~k~~~~GLGfsI~GG~~~~~~-~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-----  167 (684)
                      |.+.+.+..||||+|+||.+.... ..++||++|.|||+|+++|+|++||+||+|||+++.+++|.+|+.+||++     
T Consensus        29 v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~  108 (127)
T d1wg6a_          29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEG  108 (127)
T ss_dssp             EECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccC
Confidence            333456678899999999776543 46899999999999999999999999999999999999999999999976     


Q ss_pred             --CCEEEEEEEecC
Q psy2533         168 --GPIVTLEIAKQG  179 (684)
Q Consensus       168 --g~~V~LvV~R~~  179 (684)
                        ...|+|+|.|..
T Consensus       109 ~~~~~V~L~V~R~~  122 (127)
T d1wg6a_         109 NIRGMIQLVILRRS  122 (127)
T ss_dssp             HHTCEEEEEEEECS
T ss_pred             CCCCEEEEEEeeCC
Confidence              568999999864

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3.4e-15  Score=129.79  Aligned_cols=84  Identities=23%  Similarity=0.414  Sum_probs=70.5

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC---
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT---  167 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s---  167 (684)
                      .+++++  ....||||+|.||.+... ..+|||+.|.|||||+++|+|++||+|++|||+++.+++|++|+.+|+++   
T Consensus         9 ~~~v~~--~~~~glG~~i~gg~~~~~-~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   85 (96)
T d1wi4a1           9 FRVITV--TKETGLGLKILGGINRNE-GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   85 (96)
T ss_dssp             EEEEEE--CCSSCCCEEEEECSSSSS-CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             EEEEEe--cCCCccCEEEEeccCCCC-CCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            344444  345689999999876543 35799999999999999999999999999999999999999999999986   


Q ss_pred             -CCEEEEEEEe
Q psy2533         168 -GPIVTLEIAK  177 (684)
Q Consensus       168 -g~~V~LvV~R  177 (684)
                       ...+.|.+.|
T Consensus        86 ~~~~vel~~~R   96 (96)
T d1wi4a1          86 SESPWEIAFIR   96 (96)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence             3568887765

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.6e-15  Score=137.59  Aligned_cols=90  Identities=14%  Similarity=0.095  Sum_probs=77.5

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCC-CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQ-DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~-~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ...+.|++.+++..+|||+|.||..... ...++||+.|.|+|||+++|+|++||+||+|||+++.+++|++|+.+|+++
T Consensus        14 ~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~   93 (122)
T d1v5qa_          14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             ceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            3567788888888999999999865432 346899999999999999999999999999999999999999999999998


Q ss_pred             CCEEEEEEEec
Q psy2533         168 GPIVTLEIAKQ  178 (684)
Q Consensus       168 g~~V~LvV~R~  178 (684)
                      +..+.|+|.+.
T Consensus        94 ~~~~~l~l~~~  104 (122)
T d1v5qa_          94 SITSKVTLEIE  104 (122)
T ss_dssp             TTTTCEEEEEE
T ss_pred             CCceEEEEEEe
Confidence            76666666554

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.1e-15  Score=132.40  Aligned_cols=83  Identities=17%  Similarity=0.228  Sum_probs=74.4

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEE
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVT  172 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~  172 (684)
                      .+++.+.++.+|||+|.||.+..   .++||..|.|++||++.| |++||+||+|||+++.+++|.+|+.+|++++..|+
T Consensus         7 ~~tv~~~g~~~~Gf~i~gg~d~~---~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~   82 (94)
T d1vb7a_           7 GLTVDVAGPAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLR   82 (94)
T ss_dssp             CEEEEECSSSCCSBCCEEETTTT---EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEE
T ss_pred             eEEEEEECCCcCCEEEEeeccCC---CCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            35555567789999999997754   579999999999999877 99999999999999999999999999999999999


Q ss_pred             EEEEecC
Q psy2533         173 LEIAKQG  179 (684)
Q Consensus       173 LvV~R~~  179 (684)
                      |+|.|..
T Consensus        83 L~V~R~~   89 (94)
T d1vb7a_          83 LQLDRSS   89 (94)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9999864

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-15  Score=127.92  Aligned_cols=82  Identities=22%  Similarity=0.343  Sum_probs=70.1

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC--E
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--I  170 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~--~  170 (684)
                      .|.+.|.++.+|||+|++|.. .....++||++|.|||||+++|+|++||+|++|||+++.+++|++|+.+|++++.  .
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~-~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~   79 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGW-GSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSR   79 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTT-TSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSE
T ss_pred             CeEEEeCCCCccCEEEEeCCC-CCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            367888889999999986433 2234589999999999999999999999999999999999999999999998854  4


Q ss_pred             EEEEE
Q psy2533         171 VTLEI  175 (684)
Q Consensus       171 V~LvV  175 (684)
                      |+|.|
T Consensus        80 v~L~V   84 (85)
T d1x45a1          80 VKLNI   84 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            56655

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2.7e-15  Score=132.07  Aligned_cols=88  Identities=19%  Similarity=0.329  Sum_probs=78.1

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCC---CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQ---DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~---~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      ..+|.+.|.+..+|||+|.||.+...   ...+|||..|.+||||+  |.|++||+||+|||+++.+++|.+|+.+|+++
T Consensus         8 ~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~   85 (104)
T d2csja1           8 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS   85 (104)
T ss_dssp             EEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             cEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            46788888888999999999876543   35689999999999996  55999999999999999999999999999999


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|+|+|.|...
T Consensus        86 ~~~v~l~V~R~~~   98 (104)
T d2csja1          86 GKIAAIVVKRPRK   98 (104)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999998643

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-14  Score=131.25  Aligned_cols=87  Identities=16%  Similarity=0.313  Sum_probs=75.0

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--C
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--G  168 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g  168 (684)
                      ...+.+. +...+|||+|.||.+..   .+|||+.|.++|+|+++|+|++||+|++|||++|.+++|.+|+.+|+.+  +
T Consensus        20 ~~~v~l~-k~~~glG~~i~gg~~~~---~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g   95 (123)
T d1ueqa_          20 FLSTTLK-KSNMGFGFTIIGGDEPD---EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIG   95 (123)
T ss_dssp             EEEEEEE-CCTTSCSEEEECCSSSS---CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTT
T ss_pred             EEEEEEE-ECCCeeCEEEEeecCCC---CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCC
Confidence            3444454 45678999999987643   4799999999999999999999999999999999999999999999987  5


Q ss_pred             CEEEEEEEecCcc
Q psy2533         169 PIVTLEIAKQGAI  181 (684)
Q Consensus       169 ~~V~LvV~R~~~~  181 (684)
                      ..|.|+|.|..+.
T Consensus        96 ~~v~L~v~R~~~~  108 (123)
T d1ueqa_          96 QSVNLVLCRGYPL  108 (123)
T ss_dssp             CEEEEEEEESCCC
T ss_pred             CEEEEEEEcCCCC
Confidence            7899999997543

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=2e-15  Score=131.72  Aligned_cols=86  Identities=17%  Similarity=0.332  Sum_probs=75.2

Q ss_pred             eEEEEEecC-CCcccEEEEeccCCCC------CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHH
Q psy2533          92 KSHSVRDML-RQEAKLSEMSEEGAGQ------DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYL  164 (684)
Q Consensus        92 ~~V~v~k~~-~~GLGfsI~GG~~~~~------~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lL  164 (684)
                      +.|.+.+.. ..+|||+|.||.+...      ...||||+.|.|||||+++|+|++||+|++|||+++.+++|.+|+.+|
T Consensus         4 r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l   83 (98)
T d1rzxa_           4 RRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM   83 (98)
T ss_dssp             EEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHH
Confidence            567777765 5689999999864321      245899999999999999999999999999999999999999999999


Q ss_pred             HcCCCEEEEEEEe
Q psy2533         165 VRTGPIVTLEIAK  177 (684)
Q Consensus       165 k~sg~~V~LvV~R  177 (684)
                      +.++..|+|+|..
T Consensus        84 ~~~~~~v~l~v~p   96 (98)
T d1rzxa_          84 VANSSNLIITVKP   96 (98)
T ss_dssp             HHTCTEEEEEEEC
T ss_pred             HcCCCeEEEEEEe
Confidence            9999999999863

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.5e-15  Score=131.46  Aligned_cols=85  Identities=26%  Similarity=0.329  Sum_probs=75.4

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..++|++.| ...+|||+|.+|.+     .+|||+.|.+||||+++| |++||+||+|||+++.+++|.+|+.+|+.++.
T Consensus        19 ~~r~v~l~k-~~~glG~~i~gg~~-----~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~   91 (117)
T d1uita_          19 EPRHVKVQK-GSEPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCD   91 (117)
T ss_dssp             CCEEEEEEC-SSCCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCS
T ss_pred             CCEEEEEEe-CCCccCEEEEccCC-----CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCCCC
Confidence            456777766 46789999998754     379999999999999988 99999999999999999999999999999999


Q ss_pred             EEEEEEEecCcc
Q psy2533         170 IVTLEIAKQGAI  181 (684)
Q Consensus       170 ~V~LvV~R~~~~  181 (684)
                      .|+|+|.|.+..
T Consensus        92 ~v~l~v~~~p~~  103 (117)
T d1uita_          92 TITILAQYNPHV  103 (117)
T ss_dssp             EEEEEECCCSCC
T ss_pred             eEEEEEEECCcc
Confidence            999999877654

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.5e-15  Score=133.48  Aligned_cols=79  Identities=19%  Similarity=0.310  Sum_probs=72.2

Q ss_pred             CCcccEEEEeccCCCC--CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEec
Q psy2533         101 RQEAKLSEMSEEGAGQ--DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  178 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~--~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~  178 (684)
                      +.+|||+|.||.+.+.  +..+|||..|.++|||+++|+|++||+|++|||+++.+++|++|+.+|++++..|+|+|.|.
T Consensus        29 g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~  108 (117)
T d1ujda_          29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD  108 (117)
T ss_dssp             CCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESS
T ss_pred             CcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEEC
Confidence            4689999999976543  45689999999999999999999999999999999999999999999999999999999886


Q ss_pred             C
Q psy2533         179 G  179 (684)
Q Consensus       179 ~  179 (684)
                      .
T Consensus       109 ~  109 (117)
T d1ujda_         109 L  109 (117)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.6e-15  Score=132.59  Aligned_cols=88  Identities=19%  Similarity=0.116  Sum_probs=74.7

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCC-CcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQ-DRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~-~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s  167 (684)
                      .....|.+.+++..+|||+|.||.+... ...++||+.|.++|||+++|+|++||+|++|||+++.+++|++|+.+|+++
T Consensus         7 ~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~   86 (99)
T d1x5ra1           7 TETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA   86 (99)
T ss_dssp             SEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHH
T ss_pred             eeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4556788888899999999999865432 345899999999999999999999999999999999999999999999977


Q ss_pred             CCE--EEEEEE
Q psy2533         168 GPI--VTLEIA  176 (684)
Q Consensus       168 g~~--V~LvV~  176 (684)
                      +..  +.|.|.
T Consensus        87 ~~~~~l~l~v~   97 (99)
T d1x5ra1          87 ALAHKVVLEVE   97 (99)
T ss_dssp             HTTTCEEEEEE
T ss_pred             CCCCEEEEEEE
Confidence            444  555553

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.2e-15  Score=132.74  Aligned_cols=88  Identities=20%  Similarity=0.324  Sum_probs=77.9

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ....+|.+.| ...||||+|.||.+..   .++||+.|.++|+|+++|+|++||+|++|||+++.+++|.+|+.+|++++
T Consensus        10 ~e~~~v~l~k-~~~glG~~i~gg~~~~---~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~   85 (103)
T d1wfva_          10 FDYFTVDMEK-GAKGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG   85 (103)
T ss_dssp             SCCEECCEEC-CTTSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred             ceEEEEEEEe-CCCccCEEEEeeccCC---CCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC
Confidence            4456666765 5568999999987754   47999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCc
Q psy2533         169 PIVTLEIAKQGA  180 (684)
Q Consensus       169 ~~V~LvV~R~~~  180 (684)
                      ..|.|+|.|...
T Consensus        86 ~~v~l~v~R~~~   97 (103)
T d1wfva_          86 RRVRLLLKRGTG   97 (103)
T ss_dssp             SEECEEEECTTC
T ss_pred             CEEEEEEEECCC
Confidence            999999988653

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.4e-15  Score=130.57  Aligned_cols=84  Identities=25%  Similarity=0.409  Sum_probs=72.8

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CC
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GP  169 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~  169 (684)
                      .+|.+.| ...+|||+|.||.+..   .++||+.|.++|||+++|+|++||+||+|||+++.+++|.+|+.+|+.+  ..
T Consensus        11 ~~V~l~k-~~~glG~~i~gg~~~~---~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~   86 (103)
T d1uepa_          11 LDVHLRR-MESGFGFRILGGDEPG---QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNG   86 (103)
T ss_dssp             ECCEEES-SSSSCCEEECCCCSTT---SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEEe-CCceEeEEEEecccCC---CcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            3455554 5678999999886543   4799999999999999999999999999999999999999999999987  45


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .|+|+|.|..
T Consensus        87 ~v~l~v~r~~   96 (103)
T d1uepa_          87 QVNLTVRRKV   96 (103)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEeCC
Confidence            7999998864

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.5e-15  Score=128.98  Aligned_cols=87  Identities=22%  Similarity=0.282  Sum_probs=76.3

Q ss_pred             CCCCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          87 LDSSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        87 ~~s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      .+...+.|.+.+.++.+|||+|.+|.+..   .|+||..|.+||||+++| |++||+||+|||+++.+++|.+|+.+|+.
T Consensus         5 ~~~~~~~v~i~~~~~~glG~~i~~g~~~~---~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~   80 (101)
T d1x5na1           5 RENKEKKVFISLVGSRGLGCSISSGPIQK---PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKS   80 (101)
T ss_dssp             CCCSSEEEEECCCSSCCCCEEEEECCSSS---CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHH
T ss_pred             cCCccEEEEEEeeCCCcccEEEeccCCCC---CCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhC
Confidence            34667888898888999999999987643   589999999999999988 99999999999999999999999999999


Q ss_pred             CCCEEEEEEEec
Q psy2533         167 TGPIVTLEIAKQ  178 (684)
Q Consensus       167 sg~~V~LvV~R~  178 (684)
                      ++. +.|+|.+.
T Consensus        81 ~~~-~~l~v~~~   91 (101)
T d1x5na1          81 SRS-LTISIVAA   91 (101)
T ss_dssp             CSS-EEEEECSS
T ss_pred             CCC-EEEEEEEC
Confidence            865 66666554

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.3e-14  Score=127.18  Aligned_cols=82  Identities=22%  Similarity=0.337  Sum_probs=75.1

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...++|.+.|..+.+|||+|.++.      .++||++|.+||+|+++|+|++||+|++|||+++.+++|++|+.+|+.++
T Consensus        17 ~~i~~V~l~k~~~~~lG~~v~~~~------~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~   90 (100)
T d1va8a1          17 ETVKIVRIEKARDIPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH   90 (100)
T ss_dssp             EECEEEEEEECTTCCCCEEEEECS------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             ceEEEEEEEeCCCCCccEEEEecC------CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCC
Confidence            356788899988999999998653      37999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEE
Q psy2533         169 PIVTLEIA  176 (684)
Q Consensus       169 ~~V~LvV~  176 (684)
                      +.|+|+|.
T Consensus        91 ~~v~L~v~   98 (100)
T d1va8a1          91 GTLTFVLI   98 (100)
T ss_dssp             EEEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999885

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5e-15  Score=130.79  Aligned_cols=86  Identities=14%  Similarity=0.212  Sum_probs=73.8

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcc-cCccccCCeeeecCCeecCCCCHHHHHHHHHcCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADA-NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG  168 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r-~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg  168 (684)
                      ...+|.+.+...++|||+|.||.+..   .++||+.|.+||||++ +|+|++||+||+|||+++.+++|.+|+.+|++++
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~~---~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~   84 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC   84 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGT---EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecCC---CCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45677777878889999999987643   5799999999999999 5889999999999999999999999999998753


Q ss_pred             ----CEEEEEEEec
Q psy2533         169 ----PIVTLEIAKQ  178 (684)
Q Consensus       169 ----~~V~LvV~R~  178 (684)
                          ..|.|+|++.
T Consensus        85 ~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          85 ERHSGELMLLVRPN   98 (106)
T ss_dssp             HCCSSCEEEEEECC
T ss_pred             CCCCcEEEEEECCC
Confidence                3578877654

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=123.17  Aligned_cols=76  Identities=22%  Similarity=0.386  Sum_probs=71.0

Q ss_pred             CceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCC
Q psy2533          90 SMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP  169 (684)
Q Consensus        90 ~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~  169 (684)
                      ..++|++.|...++|||+|.+|          +|+.|.+||||+++| |++||+|++|||+++.+++|++|+.+|+++++
T Consensus         4 ~pr~V~l~k~~~g~~Gf~i~~g----------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~   72 (82)
T d1r6ja_           4 DPRTITMHKDSTGHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGT   72 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             CCEEEEEEeCCCCCcCEEEEEE----------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCC
Confidence            4678999998888899999853          699999999999999 99999999999999999999999999999999


Q ss_pred             EEEEEEE
Q psy2533         170 IVTLEIA  176 (684)
Q Consensus       170 ~V~LvV~  176 (684)
                      .|+|+|.
T Consensus        73 ~v~l~v~   79 (82)
T d1r6ja_          73 VVTITIM   79 (82)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999986

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.2e-15  Score=129.45  Aligned_cols=84  Identities=17%  Similarity=0.239  Sum_probs=72.0

Q ss_pred             EEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-----
Q psy2533          93 SHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-----  167 (684)
Q Consensus        93 ~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-----  167 (684)
                      ++..+++...+|||+|.||.+..  ..++||..|.|+|||+++|+|++||+||+|||+++.+++|.+|+.+|+++     
T Consensus         8 ~vv~~~k~~~~lG~~i~gg~~~~--~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~   85 (103)
T d1ufxa_           8 TLVRVKKSAATLGIAIEGGANTR--QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             EEEEEECCSSSCCEEEECBTTSS--CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             EEEEEEeCCCccCEEEeeecCCC--CCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCc
Confidence            44455667889999999987644  35699999999999999999999999999999999999999999999975     


Q ss_pred             CCEEEEEEEec
Q psy2533         168 GPIVTLEIAKQ  178 (684)
Q Consensus       168 g~~V~LvV~R~  178 (684)
                      ...+.|.|.+.
T Consensus        86 ~~~~~l~v~~~   96 (103)
T d1ufxa_          86 RDYIDFLVTEF   96 (103)
T ss_dssp             CSEEEEEECCC
T ss_pred             cceEEEEEeCC
Confidence            35678877554

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=7.5e-15  Score=129.23  Aligned_cols=82  Identities=20%  Similarity=0.253  Sum_probs=72.8

Q ss_pred             EEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEE
Q psy2533          96 VRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEI  175 (684)
Q Consensus        96 v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV  175 (684)
                      +...+..+|||+|.||.+..   .++||..|.+++||++. +|++||+||+|||+++.+++|.+|+.+|++++..|.|+|
T Consensus         9 v~~~g~~g~Gf~i~gg~d~~---~~v~V~~v~~g~~a~~~-~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v   84 (103)
T d1wf7a_           9 VSLVGPAPWGFRLQGGKDFN---MPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL   84 (103)
T ss_dssp             EEEESSSCCSCCEEEETTTT---EEEEECCCCTTCHHHHT-TCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEE
T ss_pred             EEEECCCCccEEEEcccCCC---CCEEEEecCCCChHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            44467789999999998754   47999999999999865 599999999999999999999999999999999999999


Q ss_pred             EecCcc
Q psy2533         176 AKQGAI  181 (684)
Q Consensus       176 ~R~~~~  181 (684)
                      .|....
T Consensus        85 ~R~~~~   90 (103)
T d1wf7a_          85 QRASAA   90 (103)
T ss_dssp             CCCSCC
T ss_pred             EECCCC
Confidence            987643

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.1e-14  Score=131.37  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=71.6

Q ss_pred             cCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC----CCEEEEE
Q psy2533          99 MLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT----GPIVTLE  174 (684)
Q Consensus        99 ~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s----g~~V~Lv  174 (684)
                      +..++|||+|.||.+.+.  .+|||+.|.|+|||+++|+|++||+|++|||+++.+++|.+|+.+|+++    +..|+|+
T Consensus        25 ~~~~~lG~~i~gg~d~~~--~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~  102 (118)
T d1v6ba_          25 KKEGSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV  102 (118)
T ss_dssp             ESCSCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             cCCCCCCEEEEeeecCCC--CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEE
Confidence            445689999999987653  4799999999999999999999999999999999999999999999864    6789999


Q ss_pred             EEecCc
Q psy2533         175 IAKQGA  180 (684)
Q Consensus       175 V~R~~~  180 (684)
                      |.|.++
T Consensus       103 v~r~pp  108 (118)
T d1v6ba_         103 VAVCPP  108 (118)
T ss_dssp             EECCCS
T ss_pred             EEeCCC
Confidence            998754

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.8e-14  Score=121.00  Aligned_cols=81  Identities=25%  Similarity=0.384  Sum_probs=73.0

Q ss_pred             ceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CC
Q psy2533          91 MKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GP  169 (684)
Q Consensus        91 ~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~  169 (684)
                      .+.+.+.|...++|||+|.++.+      ++||..|.+||||+++| |++||+|++|||+++.+++|++++.+|+.+ +.
T Consensus         3 pr~v~l~k~~~~~lG~~l~~~~~------g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~   75 (85)
T d1w9ea1           3 PREVILCKDQDGKIGLRLKSIDN------GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE   75 (85)
T ss_dssp             CEEEEEECCTTSCCSEEEEEETT------EEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             CEEEEEEeCCCCCEeEEEEeCCC------CEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCC
Confidence            46788999999999999987633      79999999999999999 999999999999999999999999999977 56


Q ss_pred             EEEEEEEec
Q psy2533         170 IVTLEIAKQ  178 (684)
Q Consensus       170 ~V~LvV~R~  178 (684)
                      .|+|+|+++
T Consensus        76 ~v~l~v~~r   84 (85)
T d1w9ea1          76 KITMTIRDR   84 (85)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEeCC
Confidence            799988654

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-14  Score=126.47  Aligned_cols=87  Identities=28%  Similarity=0.447  Sum_probs=74.6

Q ss_pred             CCCceEEEEEecC-CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc
Q psy2533          88 DSSMKSHSVRDML-RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR  166 (684)
Q Consensus        88 ~s~~~~V~v~k~~-~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~  166 (684)
                      ....+.|.|.+.+ +.+|||+|.||.+..   .++||..|.+||||+++| |++||+||+|||+++.+++|.+|+.+|+.
T Consensus         6 ~~~~~~v~l~r~~~~~glG~~i~gg~~~~---~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~   81 (101)
T d1ueza_           6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG   81 (101)
T ss_dssp             SCCCEEECCCCCCTTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS
T ss_pred             CCCEEEEEEEECCCCCeeCEEEEecccCC---CCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhc
Confidence            3456778887754 578999999987754   479999999999999999 99999999999999999999999999998


Q ss_pred             CCCEEEEEEEecC
Q psy2533         167 TGPIVTLEIAKQG  179 (684)
Q Consensus       167 sg~~V~LvV~R~~  179 (684)
                      ++. +.|+|.|..
T Consensus        82 ~~~-~~l~V~~~~   93 (101)
T d1ueza_          82 SKK-LVLSVYSAG   93 (101)
T ss_dssp             SSS-CCEEECCCC
T ss_pred             CCC-EEEEEEECC
Confidence            865 667776654

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.4e-14  Score=118.04  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=67.5

Q ss_pred             EEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEE
Q psy2533          95 SVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLE  174 (684)
Q Consensus        95 ~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~Lv  174 (684)
                      ++.| ...||||+|.++       .++||++|.+||||+++| |++||+|++|||.++.+++|.+++.+|+++++.++|+
T Consensus         2 ~l~r-~~~g~Gf~l~~~-------~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~   72 (77)
T d2f5ya1           2 TIPR-GKDGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL   72 (77)
T ss_dssp             EEEC-BTTBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             EEec-CCCcccEEEECC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEE
Confidence            4444 456799999853       258999999999999999 9999999999999999999999999999999999999


Q ss_pred             EEec
Q psy2533         175 IAKQ  178 (684)
Q Consensus       175 V~R~  178 (684)
                      |.|.
T Consensus        73 v~R~   76 (77)
T d2f5ya1          73 VWRM   76 (77)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9884

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.3e-14  Score=127.80  Aligned_cols=79  Identities=18%  Similarity=0.162  Sum_probs=71.6

Q ss_pred             ecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEe
Q psy2533          98 DMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  177 (684)
Q Consensus        98 k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R  177 (684)
                      .+.+.+|||+|.||.+..   .++||+.|.+++||+..+ |++||+||+|||+++.+++|.+|+.+|+.++..|.|+|.|
T Consensus        11 ~~g~~~~Gf~l~gg~d~~---~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R   86 (103)
T d1v5la_          11 LPGPAPWGFRLSGGIDFN---QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR   86 (103)
T ss_dssp             EESSSCCSBCCEEETTTT---EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECC
T ss_pred             EECCCCCCEEEEeecCCC---CCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEE
Confidence            366889999999997643   579999999999999766 9999999999999999999999999999999999999998


Q ss_pred             cCc
Q psy2533         178 QGA  180 (684)
Q Consensus       178 ~~~  180 (684)
                      ...
T Consensus        87 ~~~   89 (103)
T d1v5la_          87 AET   89 (103)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            654

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.7e-14  Score=121.92  Aligned_cols=62  Identities=32%  Similarity=0.503  Sum_probs=58.2

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ...|+||..|.  |+|+++|+|++||+|++|||+++.+++|++|+.+|+.+++.|+|.|.|+++
T Consensus        29 ~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~v~L~v~Rpgs   92 (92)
T d2fe5a1          29 GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS   92 (92)
T ss_dssp             TBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred             CCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCEEEEEEECCCC
Confidence            35689999998  899999999999999999999999999999999999999999999999863

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.8e-14  Score=116.85  Aligned_cols=74  Identities=24%  Similarity=0.418  Sum_probs=65.7

Q ss_pred             eEEEEEec-CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCE
Q psy2533          92 KSHSVRDM-LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPI  170 (684)
Q Consensus        92 ~~V~v~k~-~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~  170 (684)
                      .++.+.|. ...+|||+|.+|          +|.+|.|||+|++.| |++||+|++|||.++.+++|++|+++|+++++.
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g----------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~   70 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGE   70 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE
T ss_pred             EEEEEEcCCCCCCcCEEEECC----------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCE
Confidence            45666664 467899999854          799999999999976 999999999999999999999999999999999


Q ss_pred             EEEEEE
Q psy2533         171 VTLEIA  176 (684)
Q Consensus       171 V~LvV~  176 (684)
                      ++|+|.
T Consensus        71 v~l~vi   76 (79)
T d1y7na1          71 IHMKTM   76 (79)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999884

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.3e-13  Score=118.43  Aligned_cols=61  Identities=30%  Similarity=0.437  Sum_probs=57.3

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ...|+||.+|.  |+|+++|+|++||+|++|||++|.+++|++|+.+|+.++..|+|+|.|+.
T Consensus        29 ~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~L~v~R~~   91 (93)
T d1rgra_          29 DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK   91 (93)
T ss_dssp             TCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             CCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCC
Confidence            45689999997  89999999999999999999999999999999999999999999999864

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.3e-13  Score=119.04  Aligned_cols=61  Identities=18%  Similarity=0.330  Sum_probs=57.8

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .+.+|||..|.  ++|+++|+|++||+||+|||++|.+++|++|+++|+.++..|+|+|.|+.
T Consensus        39 ~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          39 SSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             CSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             CCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECC
Confidence            46789999998  89999999999999999999999999999999999999999999999864

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.3e-13  Score=117.04  Aligned_cols=61  Identities=31%  Similarity=0.468  Sum_probs=57.1

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ...+|||..|.  |+|+++|+|++||+||+|||++|.+++|++|+.+|+.++..|+|+|.|..
T Consensus        35 ~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          35 RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             SCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEECCC
T ss_pred             CCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCCCCeEEEEEEeCC
Confidence            35689999997  89999999999999999999999999999999999999999999999864

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.2e-12  Score=119.14  Aligned_cols=81  Identities=20%  Similarity=0.272  Sum_probs=70.4

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC--CC
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GP  169 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s--g~  169 (684)
                      .++.+. +...||||.|.++.      .+++|..|.|+|||+++|+|++||+||+|||+++.+++|.+|+.+|+.+  +.
T Consensus        29 ~~v~l~-~g~~GlG~~i~~~~------~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~  101 (126)
T d1wifa_          29 IQTKLT-VGNLGLGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGT  101 (126)
T ss_dssp             EEEEEE-CCTTCCCCCEEEET------TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSC
T ss_pred             EEEEEe-eCCCcEEEEEEecC------CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCC
Confidence            334443 46678999998652      3699999999999999999999999999999999999999999999986  57


Q ss_pred             EEEEEEEecC
Q psy2533         170 IVTLEIAKQG  179 (684)
Q Consensus       170 ~V~LvV~R~~  179 (684)
                      .|+|+|.|..
T Consensus       102 ~v~L~v~R~~  111 (126)
T d1wifa_         102 VLQIKAYRGF  111 (126)
T ss_dssp             EEEEEEESSS
T ss_pred             EEEEEEEeCC
Confidence            9999999874

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.2e-13  Score=123.03  Aligned_cols=78  Identities=12%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             eEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-CCE
Q psy2533          92 KSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPI  170 (684)
Q Consensus        92 ~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-g~~  170 (684)
                      ++|.|.|. ..+|||+|.|+       .++||..|.++|||+++| |++||+|++|||+++.+++|.+++.+|+.+ +..
T Consensus        17 r~v~l~k~-~~g~Gf~i~g~-------~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~   87 (111)
T d1vaea_          17 RGIHFTVE-EGDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEE   87 (111)
T ss_dssp             CCCCEECC-SSCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSE
T ss_pred             EEEEEEEC-CCccCEEEECC-------ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCe
Confidence            45667664 56899999864       258999999999999999 999999999999999999999999999988 467


Q ss_pred             EEEEEEec
Q psy2533         171 VTLEIAKQ  178 (684)
Q Consensus       171 V~LvV~R~  178 (684)
                      |+|+|.+.
T Consensus        88 v~l~v~~~   95 (111)
T d1vaea_          88 VEMKVVSL   95 (111)
T ss_dssp             ECEEEECE
T ss_pred             EEEEEECC
Confidence            99988764

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-13  Score=118.17  Aligned_cols=61  Identities=34%  Similarity=0.459  Sum_probs=57.2

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .+.|+||..|.  |+|+++|+|++||+|++|||+++.+++|++|+.+|+.++..|+|+|.|+.
T Consensus        31 ~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~k   93 (94)
T d1wf8a1          31 EKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK   93 (94)
T ss_dssp             CEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred             CCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            34689999998  89999999999999999999999999999999999999999999999864

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.3e-13  Score=115.30  Aligned_cols=61  Identities=52%  Similarity=0.768  Sum_probs=57.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..|+||.+|.  |+|+++|+|++||+||+|||++|.+++|++|+.+|++++..|+|.|.|+++
T Consensus        30 ~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~v~L~v~R~ga   92 (92)
T d1t2ma1          30 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGA   92 (92)
T ss_dssp             SCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECCC
T ss_pred             CCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            4589999998  899999999999999999999999999999999999999999999999864

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.2e-13  Score=120.25  Aligned_cols=88  Identities=22%  Similarity=0.400  Sum_probs=71.7

Q ss_pred             CceEEEEEec-CCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-
Q psy2533          90 SMKSHSVRDM-LRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-  167 (684)
Q Consensus        90 ~~~~V~v~k~-~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-  167 (684)
                      ..+.|.+.|. ...+|||+|.++.+.. ...+|||+.|.|||||+++|+|++||+|++|||.++.+  +.+++.+|+.+ 
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~-~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~~   95 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEE   95 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSS
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCC-CCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhCC
Confidence            3445666654 4578999999886643 34689999999999999999999999999999999975  66778888865 


Q ss_pred             CCEEEEEEEecCc
Q psy2533         168 GPIVTLEIAKQGA  180 (684)
Q Consensus       168 g~~V~LvV~R~~~  180 (684)
                      +..|.|+|.|...
T Consensus        96 ~~~v~l~v~r~~~  108 (124)
T d1wh1a_          96 NKNFSLLIARPEL  108 (124)
T ss_dssp             CCSCCEEEEECSS
T ss_pred             CCcEEEEEEeCCC
Confidence            6679999988654

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.8e-13  Score=117.81  Aligned_cols=87  Identities=24%  Similarity=0.343  Sum_probs=71.9

Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCC
Q psy2533         217 SSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGD  294 (684)
Q Consensus       217 ~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GD  294 (684)
                      ..+.+.+...||||++......                              .....++||..|.  |+|+++|+|++||
T Consensus        10 ~~V~l~k~~~glG~~i~~~~~~------------------------------~~~~~~i~V~~v~~gg~A~~~G~L~~GD   59 (110)
T d1um1a_          10 FTVELERGPSGLGMGLIDGMHT------------------------------HLGAPGLYIQTLLPGSPAAADGRLSLGD   59 (110)
T ss_dssp             EEEEEECCTTCCCEEEEETTTS------------------------------TTCCSSEEEEEECTTSHHHHHSCCCTTC
T ss_pred             EEEEEEECCCCCCEEEEeecCC------------------------------CCCCCCEEEEEECCCCHHHHcCCCccCC
Confidence            3566777788888888621100                              0134689999997  8999999999999


Q ss_pred             EEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         295 QLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       295 qIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      +||+|||+++.+++|++|+.+|+.++..|+|+|.|+...
T Consensus        60 ~Il~INg~~v~~~~~~ev~~llk~~~~~v~l~v~r~~~~   98 (110)
T d1um1a_          60 RILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVE   98 (110)
T ss_dssp             EEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCCHH
T ss_pred             EEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            999999999999999999999999999999999987643

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.4e-13  Score=114.07  Aligned_cols=59  Identities=25%  Similarity=0.421  Sum_probs=53.4

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      ...|+||..|.  |+|+++|+|++||+||+|||+++.++||++|+.+|+++++.|+|+|.|
T Consensus        34 ~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          34 VMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS   94 (96)
T ss_dssp             ----EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEEC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            45689999998  899999999999999999999999999999999999999999999986

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-12  Score=114.52  Aligned_cols=62  Identities=21%  Similarity=0.449  Sum_probs=57.8

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .+.++||..|.  ++|+++|.|++||+||+|||++|.+++|++|+.+|+.++..|+|+|.|+..
T Consensus        36 ~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~R~~~   99 (105)
T d1whaa_          36 GDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG   99 (105)
T ss_dssp             TCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCC
T ss_pred             CCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCCCeEEEEEEECCC
Confidence            35689999998  899999999999999999999999999999999999999999999998753

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.7e-12  Score=117.87  Aligned_cols=86  Identities=22%  Similarity=0.306  Sum_probs=70.3

Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCCCC
Q psy2533         217 SSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQAGD  294 (684)
Q Consensus       217 ~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~GD  294 (684)
                      ..+.+.+...||||++..+    .+.                          ...+.+|||..|.  |+|+++|+|++||
T Consensus        31 ~~V~l~k~~~glG~~i~gg----~~~--------------------------~~~~~~i~V~~v~~gg~A~~~G~L~~GD   80 (130)
T d1i16a_          31 CTVTLEKMSAGLGFSLEGG----KGS--------------------------LHGDKPLTINRIFKGAASEQSETVQPGD   80 (130)
T ss_dssp             EEEEEETTSSSTTEEEECC----CCC--------------------------SSSCCCCEEEEECSSCCCSSSCCCCTTC
T ss_pred             EEEEEEeCCCccCEEEeec----cCC--------------------------CCCCCCEEEEEECCCChHHhcCCcccCc
Confidence            3466778888899998621    110                          0134589999997  8999999999999


Q ss_pred             EEEEECCEecCCCCHHHHHHHHHhCCC-eEEEEEEeCCc
Q psy2533         295 QLLKVDGQSLVGITQEKAAEYLVRTGP-IVTLEIAKQGA  332 (684)
Q Consensus       295 qIL~VNG~sl~g~Th~eAv~lLk~sg~-~VtL~V~R~~~  332 (684)
                      +||+|||++|.+++|++|+.+|+.++. .|+|+|.|+..
T Consensus        81 ~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~~~  119 (130)
T d1i16a_          81 EILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             CEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred             eeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcCCC
Confidence            999999999999999999999999765 89999988743

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=9.9e-13  Score=115.37  Aligned_cols=64  Identities=28%  Similarity=0.335  Sum_probs=59.4

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccccc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYHG  336 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~~  336 (684)
                      .|+||..|.  |+|+++|.|++||+|++|||++|.+++|++|+.+|+.++..++|+|.|+...++.
T Consensus        33 ~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~L~v~~~~~~~~~   98 (102)
T d1tp5a1          33 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSR   98 (102)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHHHHHT
T ss_pred             CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEEEEEEECCccccc
Confidence            478999997  8999999999999999999999999999999999999999999999998766654

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.8e-12  Score=109.90  Aligned_cols=60  Identities=25%  Similarity=0.379  Sum_probs=56.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      +.++||..|.  |+|+++|+|++||+||+|||+++.+++|++|+.+|+.+++.|+|+|.|..
T Consensus        37 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~v~L~V~r~~   98 (99)
T d1p1da2          37 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE   98 (99)
T ss_dssp             TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             CCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            3579999998  89999999999999999999999999999999999999999999999864

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-11  Score=106.67  Aligned_cols=81  Identities=14%  Similarity=0.211  Sum_probs=63.9

Q ss_pred             CCceEEEEEecCCCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcC-
Q psy2533          89 SSMKSHSVRDMLRQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-  167 (684)
Q Consensus        89 s~~~~V~v~k~~~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~s-  167 (684)
                      ....+|++.|.. .||||+|.++.+      +.++..+   ++|+.++.|++||+||+|||+++.+++|++|+.+||++ 
T Consensus         9 ~e~~~v~l~k~~-~glGf~i~g~~~------~~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~   78 (96)
T d1ujva_           9 AELMTLTIVKGA-QGFGFTIADSPT------GQRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CCCEEEEEECCS-SSSSEEEEEETT------EEEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             ceEEEEEEEeCC-CcccEEEEeeCC------CceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            345677787754 689999998754      2333333   34555667999999999999999999999999999986 


Q ss_pred             -CCEEEEEEEecC
Q psy2533         168 -GPIVTLEIAKQG  179 (684)
Q Consensus       168 -g~~V~LvV~R~~  179 (684)
                       +..|+|+|.|..
T Consensus        79 ~g~~v~l~v~R~~   91 (96)
T d1ujva_          79 IGSETSLIIHRGS   91 (96)
T ss_dssp             TTSEEEEEEECCS
T ss_pred             CCCEEEEEEEECC
Confidence             678999998864

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=4.5e-12  Score=109.52  Aligned_cols=60  Identities=28%  Similarity=0.410  Sum_probs=56.0

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .++||..|.  |+|+++|+|++||+|++|||++|.+++|++|+.+|+++++.|+|+|.|+..
T Consensus        28 ~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~r~~~   89 (95)
T d1n7ea_          28 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD   89 (95)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            468999997  799999999999999999999999999999999999999999999998754

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.9e-12  Score=108.50  Aligned_cols=59  Identities=29%  Similarity=0.465  Sum_probs=55.5

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .+.|+||..|.  |+|+++| |++||+|++|||+++.+++|.+|+.+|++++..|+|.|.|.
T Consensus        37 ~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          37 DDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE   97 (97)
T ss_dssp             TCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCCCCEEEEEEEEC
Confidence            45789999997  8999998 99999999999999999999999999999999999999984

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=115.38  Aligned_cols=62  Identities=31%  Similarity=0.444  Sum_probs=57.9

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .+.++||..|.  |+|+++|+|++||+||+|||++|.++||++|+.+|+.++..|+|+|.|...
T Consensus        42 ~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          42 TDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             TCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCC
T ss_pred             CCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            46789999998  899999999999999999999999999999999999999999999988653

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.8e-11  Score=110.63  Aligned_cols=61  Identities=15%  Similarity=0.265  Sum_probs=55.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~~~  333 (684)
                      .++||..|.  ++|+++|+|++||+|++|||++|.+++|++|+++|+.+  +..|.|+|.|....
T Consensus        44 ~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcCCCC
Confidence            478999998  89999999999999999999999999999999999987  47899999986443

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.6e-12  Score=107.14  Aligned_cols=59  Identities=19%  Similarity=0.288  Sum_probs=53.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      .++||..|.  |+|+++| |++||+|++|||+++.+++|++|+.+|+.+++.|+|+|.++..
T Consensus        27 ~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~v~~~~~   87 (91)
T d1g9oa_          27 LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET   87 (91)
T ss_dssp             SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred             CCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEECCCC
Confidence            478999997  7888877 9999999999999999999999999999999999999987643

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.1e-12  Score=109.05  Aligned_cols=57  Identities=39%  Similarity=0.549  Sum_probs=53.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA  328 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~  328 (684)
                      ..++||..|.  |+|+++|.|++||+|++|||+++.+++|++|+++|+++++.|+|+|.
T Consensus        29 ~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~v~L~Vl   87 (88)
T d2fnea1          29 DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL   87 (88)
T ss_dssp             EEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             CcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence            3478999997  89999999999999999999999999999999999999999999985

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.5e-12  Score=110.16  Aligned_cols=85  Identities=21%  Similarity=0.320  Sum_probs=70.1

Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCcEEEecc--hhhhhcCCCCC
Q psy2533         215 ERSSQNLHDMNNGVGGSHHPAPGPGSGMNHHPVVSRQASTPSLPQASPYPAPAPAPADPERFYQNLS--VYRNQNGRLQA  292 (684)
Q Consensus       215 ~~~sv~L~k~s~GlGfSi~~~~g~G~Gi~ikpIv~~~~~t~slp~~sl~~gs~~~~~d~GIFV~sI~--GaAardGrLr~  292 (684)
                      +...+.+.+...||||++..+.                                 ....++||..|.  ++|+++|.|++
T Consensus        11 e~~~v~l~k~~~glG~~i~gg~---------------------------------~~~~~i~I~~v~~gg~A~~~g~L~~   57 (103)
T d1wfva_          11 DYFTVDMEKGAKGFGFSIRGGR---------------------------------EYKMDLYVLRLAEDGPAIRNGRMRV   57 (103)
T ss_dssp             CCEECCEECCTTSSSBCCEEET---------------------------------TTTEEEECCCBCTTSHHHHHCSSCT
T ss_pred             eEEEEEEEeCCCccCEEEEeec---------------------------------cCCCCEEEEEEcCCChHHhcCCCCC
Confidence            3345667777888998885110                                 123467888887  79999999999


Q ss_pred             CCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         293 GDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       293 GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ||+|++|||++|.+++|.+|+.+|+.++..|+|+|.|+..
T Consensus        58 GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v~l~v~R~~~   97 (103)
T d1wfva_          58 GDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG   97 (103)
T ss_dssp             TCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTC
T ss_pred             CCEEEEECCEECCCCcHHHHHHHHHcCCCEEEEEEEECCC
Confidence            9999999999999999999999999999999999998753

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.20  E-value=2.3e-11  Score=104.25  Aligned_cols=76  Identities=22%  Similarity=0.387  Sum_probs=66.2

Q ss_pred             CCcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH-cCCCEEEEEEEecC
Q psy2533         101 RQEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV-RTGPIVTLEIAKQG  179 (684)
Q Consensus       101 ~~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk-~sg~~V~LvV~R~~  179 (684)
                      -.|+|+.|....+.   ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+|+ ..+..|+|+|.|..
T Consensus         4 ~~GiGi~i~~~~~~---~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g   79 (92)
T d1fc6a3           4 VTGVGLEITYDGGS---GKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG   79 (92)
T ss_dssp             CBBCSEEEEECTTC---SSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             eEEEEEEEEEcCCC---CceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECC
Confidence            45899998764332   2479999999999999999 9999999999999999999999999998 46778999999975


Q ss_pred             c
Q psy2533         180 A  180 (684)
Q Consensus       180 ~  180 (684)
                      .
T Consensus        80 ~   80 (92)
T d1fc6a3          80 A   80 (92)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.19  E-value=2e-11  Score=104.87  Aligned_cols=60  Identities=22%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC---CCeEEEEEEeC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT---GPIVTLEIAKQ  330 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s---g~~VtL~V~R~  330 (684)
                      .+.|+||.+|.  |+|+++|+|++||+|++|||+++.+++|++|+++|+.+   ...|+|+|.|.
T Consensus        27 ~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          27 GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             SCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            35689999998  89999999999999999999999999999999999874   55799999985

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.9e-11  Score=107.25  Aligned_cols=59  Identities=24%  Similarity=0.337  Sum_probs=53.9

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .+.||||..|.  |+|++  +|++||+||+|||++|.+++|++|+.+|+.+++.|+|.|.|+-
T Consensus        41 ~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~v~L~V~R~~  101 (103)
T d2h3la1          41 DDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             TCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEEEEE
T ss_pred             CCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEEC
Confidence            46799999998  67754  5999999999999999999999999999999999999999864

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.8e-11  Score=107.16  Aligned_cols=59  Identities=22%  Similarity=0.365  Sum_probs=53.2

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC--CeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG--PIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg--~~VtL~V~R~~  331 (684)
                      .++||..|.  ++|+++|+|++||+||+|||++|.+++|++|+++|+.++  ..|+|.|.|+.
T Consensus        34 ~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~~   96 (103)
T d1uepa_          34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            458999997  899999999999999999999999999999999999874  57999998853

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.7e-11  Score=100.83  Aligned_cols=56  Identities=14%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      ++||..|.  |+|++.| |++||+|++|||+++.+++|.+++.+|+.++..++|.|.|.
T Consensus        19 ~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1          19 PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             SCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            47888887  7888888 99999999999999999999999999999999999999884

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.7e-11  Score=107.39  Aligned_cols=63  Identities=17%  Similarity=0.228  Sum_probs=54.6

Q ss_pred             CCcEEEecc-hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Q psy2533         273 PERFYQNLS-VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIYH  335 (684)
Q Consensus       273 ~GIFV~sI~-GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~~  335 (684)
                      .++||..|. +.++.+++|++||+||+|||++|.+++|++|+++|+.++..|+|+|.|......
T Consensus        29 ~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~~~~~~   92 (103)
T d1wf7a_          29 MPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK   92 (103)
T ss_dssp             EEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSCCCC
T ss_pred             CCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCCC
Confidence            357888877 555567889999999999999999999999999999999999999998765443

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2e-11  Score=103.35  Aligned_cols=58  Identities=16%  Similarity=0.200  Sum_probs=51.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .++||..|.  ++|+ +++|++||+|++|||+++.+++|++|+.+|+.+++.|+|+|.|.+
T Consensus        25 ~~v~V~~v~~gs~A~-~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~V~R~~   84 (85)
T d1rgwa_          25 MPLTISRITPGSKAA-QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK   84 (85)
T ss_dssp             SCCBEEEECTTSHHH-HSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             CCEEEEEecCCChHH-hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            457898887  4555 577999999999999999999999999999999999999998864

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=2.4e-11  Score=104.22  Aligned_cols=59  Identities=20%  Similarity=0.371  Sum_probs=55.8

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      ...|+||..|.  |+|+++|+|++||+|++|||+++.+++|++|+++|++++..|+|+|.|
T Consensus        33 ~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~V~R   93 (94)
T d1ihja_          33 KTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT   93 (94)
T ss_dssp             CEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEe
Confidence            35689999997  899999999999999999999999999999999999999999999987

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=3.3e-11  Score=103.30  Aligned_cols=58  Identities=17%  Similarity=0.244  Sum_probs=54.1

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      ..|+||..|.  |+|+++| |++||+|++|||+++.+++|.+|+.+|+.++..|+|+|.|.
T Consensus        31 ~~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~R~   90 (91)
T d1m5za_          31 EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEC
Confidence            3589999998  7888887 99999999999999999999999999999999999999985

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.1e-11  Score=107.24  Aligned_cols=59  Identities=22%  Similarity=0.299  Sum_probs=53.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      ..++||..|.  |+|+++|+|++||+|++|||++|.+++|++|+.+|+.++..+.+++.++
T Consensus        34 ~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~~r   94 (107)
T d1x6da1          34 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTR   94 (107)
T ss_dssp             CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEEEC
Confidence            3578999998  7999999999999999999999999999999999999988777776654

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.3e-11  Score=106.96  Aligned_cols=62  Identities=19%  Similarity=0.247  Sum_probs=54.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      +.|+||..|.  ++|++. +|++||+||+|||++|.+++|++|+.+|+.++..|+|+|.|....+
T Consensus        41 ~~gi~V~~V~~gs~A~~~-gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~~p~~~  104 (117)
T d1uita_          41 KGGIYVSKVTVGSIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVH  104 (117)
T ss_dssp             TSCEEEEEECTTSHHHHH-TCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCCC
T ss_pred             CCCEEEEEEecCChHHhC-CCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEEEEECCcce
Confidence            3579999998  677765 5999999999999999999999999999999999999998765443

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.9e-11  Score=105.08  Aligned_cols=61  Identities=23%  Similarity=0.366  Sum_probs=56.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~  332 (684)
                      ..++||..|.  |+|+++|.|++||+|++|||++|.+++|++|+.+|+.++..|+|+|.|...
T Consensus        42 ~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~v~l~V~r~~~  104 (114)
T d1uewa_          42 TVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             CCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSC
T ss_pred             cCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            4579999997  899999999999999999999999999999999999999999999988643

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.1e-11  Score=107.65  Aligned_cols=59  Identities=24%  Similarity=0.457  Sum_probs=54.1

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQ  330 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~  330 (684)
                      +.|+||..|.  |+|+++|+|++||+||+|||++|.+++|++|+.+|+.+  +..++|.|.||
T Consensus        46 ~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~RP  108 (108)
T d2cssa1          46 RLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRP  108 (108)
T ss_dssp             SEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEEC
T ss_pred             CcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeCc
Confidence            4589999997  89999999999999999999999999999999999976  45799999886

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=5.8e-11  Score=107.80  Aligned_cols=59  Identities=22%  Similarity=0.288  Sum_probs=53.6

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~~  331 (684)
                      .++||..|.  |+|+++|+|++||+||+|||++|.+++|++|+.+|+.+  +..|+|+|.|..
T Consensus        49 ~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~~  111 (126)
T d1wifa_          49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGF  111 (126)
T ss_dssp             TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSS
T ss_pred             CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeCC
Confidence            457888887  89999999999999999999999999999999999985  479999999873

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=4.8e-11  Score=105.88  Aligned_cols=57  Identities=16%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC-CeEEEEEEeCC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-PIVTLEIAKQG  331 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg-~~VtL~V~R~~  331 (684)
                      ++||..|.  ++|+++| |++||+||+|||++|.+++|++|+.+|+.++ ..|+|+|.++.
T Consensus        37 ~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~~~   96 (111)
T d1vaea_          37 PVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL   96 (111)
T ss_dssp             SCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEE
T ss_pred             cEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEECCC
Confidence            46777776  7899988 9999999999999999999999999999875 57999988653

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=5e-11  Score=103.08  Aligned_cols=58  Identities=22%  Similarity=0.444  Sum_probs=52.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC----CeEEEEEEe
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG----PIVTLEIAK  329 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg----~~VtL~V~R  329 (684)
                      ..++||..|.  |+|+++|+|++||+|++|||+++.+++|++|+.+|+.+.    ..+.|.+.|
T Consensus        33 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          33 GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             CCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            4579999998  899999999999999999999999999999999999873    568888875

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.9e-10  Score=104.45  Aligned_cols=60  Identities=23%  Similarity=0.441  Sum_probs=52.2

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~  333 (684)
                      ..|+||..|.  ++|+++| |++||+||+|||++|.+++|++|+++|+.++ .|.|+|.+....
T Consensus        45 ~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~~-~v~l~v~~~~~~  106 (128)
T d1uf1a_          45 GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR-HLILTVKDVGRL  106 (128)
T ss_dssp             TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS-EEEEEEECCSCC
T ss_pred             CCCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC-cEEEEEEECCcC
Confidence            3478999998  7888887 9999999999999999999999999998865 789999776543

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=7.3e-11  Score=99.46  Aligned_cols=53  Identities=23%  Similarity=0.467  Sum_probs=48.0

Q ss_pred             EEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         276 FYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       276 FV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      +|..|.  |+|+++| |++||+|++|||+++.+++|++|+.+|++++..|+|+|..
T Consensus        26 ~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~v~p   80 (82)
T d1r6ja_          26 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP   80 (82)
T ss_dssp             EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEEEEc
Confidence            455555  7899988 9999999999999999999999999999999999999963

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=1.3e-10  Score=101.15  Aligned_cols=59  Identities=17%  Similarity=0.360  Sum_probs=53.9

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      ...++||..|.  |+|+++| |++||+|++|||+++.+++|++++.+|++++..|+|+|.+.
T Consensus        41 ~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          41 FPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             CCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            34678999997  7888876 99999999999999999999999999999999999999874

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=7.6e-11  Score=100.29  Aligned_cols=57  Identities=19%  Similarity=0.298  Sum_probs=53.3

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      .++||..|.  |+|+++|.|++||+|++|||+++.+++|++|+.+|+.++..|+|+|.+
T Consensus        25 ~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i~p   83 (88)
T d1kwaa_          25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP   83 (88)
T ss_dssp             GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEe
Confidence            368999987  899999999999999999999999999999999999999999999973

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=9.2e-11  Score=103.13  Aligned_cols=58  Identities=26%  Similarity=0.342  Sum_probs=50.8

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      ..++||..|.  |+|+++|.|++||+|++|||+++.+++|++|+.+|+.++..+.|.+.+
T Consensus        25 ~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~l~~   84 (112)
T d1qaua_          25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLIL   84 (112)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEE
T ss_pred             CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEEEEE
Confidence            3579999998  899999999999999999999999999999999999987655454433

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.6e-10  Score=101.20  Aligned_cols=57  Identities=25%  Similarity=0.329  Sum_probs=51.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      +.|+||..|.  ++|+++| |++||+||+|||+++.+++|++|+.+|+.+. .|+|+|.|.
T Consensus        40 ~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~v~l~V~~~   98 (104)
T d1wi2a_          40 QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISMRVRFF   98 (104)
T ss_dssp             CCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS-SEEEEEECC
T ss_pred             CCCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC-eEEEEEEEC
Confidence            4578999998  8999998 9999999999999999999999999999875 699998664

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=6.7e-11  Score=103.75  Aligned_cols=62  Identities=16%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             CCcEEEecc-hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         273 PERFYQNLS-VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       273 ~GIFV~sI~-GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      .++||..|. +.+|.+++|++||+||+|||++|.+++|++|+.+|+.++..|+|+|.|.....
T Consensus        29 ~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~~~~   91 (103)
T d1v5la_          29 QPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL   91 (103)
T ss_dssp             EEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTTTT
T ss_pred             CCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCccc
Confidence            457777777 43344677999999999999999999999999999999999999999876443

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.6e-10  Score=97.91  Aligned_cols=56  Identities=27%  Similarity=0.431  Sum_probs=50.0

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCC--eEEEEE
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEI  327 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~--~VtL~V  327 (684)
                      .+++||..|.  |+|+++|+|++||+|++|||+++.+++|++|+.+|++++.  .|+|.|
T Consensus        25 ~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V   84 (85)
T d1x45a1          25 LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI   84 (85)
T ss_dssp             SCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            3579999997  8999999999999999999999999999999999999765  456655

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.2e-10  Score=99.52  Aligned_cols=58  Identities=28%  Similarity=0.389  Sum_probs=54.8

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      .++||..|.  |+|+++|.|++||+|++|||+++.+++|++|+.+|+.++..|+|+|.|.
T Consensus        30 ~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~~   89 (90)
T d1qava_          30 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM   89 (90)
T ss_dssp             EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEC
T ss_pred             CCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEe
Confidence            478999997  8999999999999999999999999999999999999999999999764

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.1e-10  Score=105.21  Aligned_cols=58  Identities=17%  Similarity=0.243  Sum_probs=51.0

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      ..++||..|.  |+|+++|+|++||+||+|||++|.+++|++|+.+|+.++..+.|.|.+
T Consensus        44 ~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~  103 (122)
T d1v5qa_          44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI  103 (122)
T ss_dssp             SSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred             CCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEEEEE
Confidence            4578999998  899999999999999999999999999999999999987665554443

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.7e-10  Score=102.87  Aligned_cols=63  Identities=22%  Similarity=0.287  Sum_probs=57.7

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ..++||..|.  ++|+++|+|++||+||+|||++|.+++|++|+.+|++++..|+|+|.|.....
T Consensus        41 ~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v~l~v~~~~~~~  105 (117)
T d1v62a_          41 KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQ  105 (117)
T ss_dssp             SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTTBC
T ss_pred             CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcEEEEEEECCCCC
Confidence            4689999998  89999999999999999999999999999999999999999999998765433

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=1.3e-10  Score=105.37  Aligned_cols=60  Identities=30%  Similarity=0.486  Sum_probs=55.1

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-------CCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-------GPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-------g~~VtL~V~R~~  331 (684)
                      +.++||..|.  |+|+++|+|++||+||+|||++|.+++|++|+++|+.+       ...|+|.|.|..
T Consensus        54 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_          54 DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             EEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             cCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeCC
Confidence            4579999998  89999999999999999999999999999999999986       568999999863

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=1.4e-10  Score=101.37  Aligned_cols=59  Identities=17%  Similarity=0.316  Sum_probs=53.2

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      ...++||..|.  |+|+  |+|++||+||+|||+++.+++|.+|+++|++++..|+|+|.|+.
T Consensus        37 ~~~~i~V~~v~~gs~A~--~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~l~V~R~~   97 (104)
T d2csja1          37 GETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPR   97 (104)
T ss_dssp             CCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEEE
T ss_pred             CCCCEEEEEECCCChhh--cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCC
Confidence            35689999998  5664  67999999999999999999999999999999999999999864

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8.6e-11  Score=102.95  Aligned_cols=58  Identities=19%  Similarity=0.296  Sum_probs=51.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC-----CeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG-----PIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg-----~~VtL~V~R~  330 (684)
                      +++||..|.  |+|+++|.|++||+||+|||++|.+++|++|+.+|+.++     ..+.|.|.+.
T Consensus        32 ~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v~~~   96 (103)
T d1ufxa_          32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEF   96 (103)
T ss_dssp             SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCC
T ss_pred             CCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEEeCC
Confidence            468999997  899999999999999999999999999999999999863     4677877654

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.02  E-value=2e-10  Score=99.51  Aligned_cols=59  Identities=19%  Similarity=0.389  Sum_probs=55.1

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAK  329 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R  329 (684)
                      ...|+||..|.  |+|+++|.|++||+|++|||++|.+++|++|+.+|+.++..|+|+|.+
T Consensus        36 ~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          36 KQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKP   96 (98)
T ss_dssp             EEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTCTEEEEEEEC
T ss_pred             CCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCCCeEEEEEEe
Confidence            35689999997  899999999999999999999999999999999999999999999864

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=1.3e-10  Score=100.00  Aligned_cols=58  Identities=14%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .++||..|.  ++|++ ++|++||+||+|||+++.+++|.+|+.+|+.++..|+|+|.|..
T Consensus        30 ~~i~V~~v~~gs~A~~-~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~   89 (94)
T d1vb7a_          30 TPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSS   89 (94)
T ss_dssp             EEEECCCBCTTSSHHH-HTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCC
T ss_pred             CCEEEEeccCCChhhh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            357787877  67766 56999999999999999999999999999999999999999864

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.4e-10  Score=103.62  Aligned_cols=60  Identities=17%  Similarity=0.204  Sum_probs=56.3

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      +.|+||..|.  |+|+++|.|++||+||+|||++|.+++|++|+.+|++++..|+|+|.|..
T Consensus        48 ~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~~  109 (117)
T d1ujda_          48 EIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDL  109 (117)
T ss_dssp             CEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSC
T ss_pred             CcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEECC
Confidence            4589999998  89999999999999999999999999999999999999999999998764

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=2.5e-10  Score=99.43  Aligned_cols=56  Identities=16%  Similarity=0.290  Sum_probs=53.0

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA  328 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~  328 (684)
                      .++||..|.  |+|+++|.|++||+|++|||+++.+++|++|+.+|++++..|+|+|.
T Consensus        41 ~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~v~   98 (100)
T d1va8a1          41 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI   98 (100)
T ss_dssp             SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEE
T ss_pred             CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEEEEE
Confidence            468999997  89999999999999999999999999999999999999999999986

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.9e-10  Score=98.14  Aligned_cols=49  Identities=16%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC--CCeEEEEEEeC
Q psy2533         282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT--GPIVTLEIAKQ  330 (684)
Q Consensus       282 GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s--g~~VtL~V~R~  330 (684)
                      ++|+.+++|++||+||+|||++|.+++|++|+++|+++  +..|+|+|.|.
T Consensus        40 ~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~   90 (96)
T d1ujva_          40 LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            34677889999999999999999999999999999986  57899999885

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.5e-10  Score=92.84  Aligned_cols=52  Identities=19%  Similarity=0.349  Sum_probs=46.5

Q ss_pred             EEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2533         276 FYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIA  328 (684)
Q Consensus       276 FV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~  328 (684)
                      ||.+|.  |+|++ ++|++||+|++|||+++.+++|++|+++|+.++..++|+|.
T Consensus        23 ~V~~V~~gs~A~~-~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~vi   76 (79)
T d1y7na1          23 IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTM   76 (79)
T ss_dssp             EEEEECTTSHHHH-HTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             EEEEEcCCCHHHH-CCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEE
Confidence            566665  67776 56999999999999999999999999999999999999985

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.6e-10  Score=92.87  Aligned_cols=57  Identities=28%  Similarity=0.447  Sum_probs=50.5

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~  330 (684)
                      .|+||..|.  |+|++.| |++||+|++|||+++.++++++++.+|+.+ +..|+|.|.++
T Consensus        25 ~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~r   84 (85)
T d1w9ea1          25 NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR   84 (85)
T ss_dssp             TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeCC
Confidence            478999998  7888887 999999999999999999999999999986 46799988653

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.1e-10  Score=99.60  Aligned_cols=58  Identities=14%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             CCcEEEecc--hhhhh-cCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCC----CeEEEEEEeC
Q psy2533         273 PERFYQNLS--VYRNQ-NGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTG----PIVTLEIAKQ  330 (684)
Q Consensus       273 ~GIFV~sI~--GaAar-dGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg----~~VtL~V~R~  330 (684)
                      .++||..|.  |+|++ +|+|++||+||+|||+++.+++|++|+.+|+.++    ..|.|.|.+.
T Consensus        34 ~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          34 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN   98 (106)
T ss_dssp             EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred             CCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCC
Confidence            468999997  78988 6899999999999999999999999999999864    3577777543

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.2e-10  Score=98.43  Aligned_cols=57  Identities=25%  Similarity=0.293  Sum_probs=50.1

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCC--eEEEEEE
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGP--IVTLEIA  328 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~--~VtL~V~  328 (684)
                      ..++||..|.  |+|+++|.|++||+|++|||++|.+++|++|+++|++++.  .++|.|.
T Consensus        37 ~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~v~   97 (99)
T d1x5ra1          37 SSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEVE   97 (99)
T ss_dssp             SSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEE
Confidence            3578999998  8999999999999999999999999999999999998654  4666554

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.7e-10  Score=96.54  Aligned_cols=57  Identities=23%  Similarity=0.462  Sum_probs=49.6

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeC
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQ  330 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~  330 (684)
                      ..|+||..|.  ++|+++| |++||+||+|||+++.+++|++|+++|+.++. ++|+|.+.
T Consensus        33 ~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~-~~l~v~~~   91 (101)
T d1x5na1          33 KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAA   91 (101)
T ss_dssp             SCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCSS-EEEEECSS
T ss_pred             CCCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCCC-EEEEEEEC
Confidence            4589999998  6787765 99999999999999999999999999999865 77777664

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.1e-09  Score=98.17  Aligned_cols=58  Identities=17%  Similarity=0.284  Sum_probs=53.6

Q ss_pred             CcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC----CCeEEEEEEeCC
Q psy2533         274 ERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT----GPIVTLEIAKQG  331 (684)
Q Consensus       274 GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s----g~~VtL~V~R~~  331 (684)
                      ++||..|.  |+|+++|+|++||+|++|||++|.+++|++|+.+|+.+    +..|+|.|.|..
T Consensus        44 ~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~p  107 (118)
T d1v6ba_          44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP  107 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred             CEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeCC
Confidence            68999997  89999999999999999999999999999999999864    678999999854

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.6e-10  Score=96.83  Aligned_cols=57  Identities=25%  Similarity=0.423  Sum_probs=50.1

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~  331 (684)
                      .++||..|.  ++|+++| |++||+||+|||++|.+++|++|+++|+.++. +.|+|.|.+
T Consensus        35 ~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~-~~l~V~~~~   93 (101)
T d1ueza_          35 VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKK-LVLSVYSAG   93 (101)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSSS-CCEEECCCC
T ss_pred             CCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCCC-EEEEEEECC
Confidence            478999997  7888887 99999999999999999999999999998765 667777654

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.1e-09  Score=96.64  Aligned_cols=62  Identities=19%  Similarity=0.389  Sum_probs=52.4

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhC-CCeEEEEEEeCCccc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRT-GPIVTLEIAKQGAIY  334 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~s-g~~VtL~V~R~~~~~  334 (684)
                      .+.||||..|.  |+|+++|+|++||+||+|||++|.+  +.+++.+|+.+ +..|.|.|.|+....
T Consensus        46 ~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~~~~~v~l~v~r~~~~~  110 (124)
T d1wh1a_          46 DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIARPELQL  110 (124)
T ss_dssp             SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEEECSSCC
T ss_pred             CCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhCCCCcEEEEEEeCCCcc
Confidence            45689999998  8999999999999999999999975  56778888764 668999999875443

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=3e-09  Score=89.86  Aligned_cols=71  Identities=24%  Similarity=0.347  Sum_probs=57.5

Q ss_pred             CcccEEEEeccCCCCCcccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecC
Q psy2533         102 QEAKLSEMSEEGAGQDRLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQG  179 (684)
Q Consensus       102 ~GLGfsI~GG~~~~~~~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~  179 (684)
                      .+||+.+....+    ..|++|..|.|+|||+++| |++||+|++|||.++.++  .+....+.  ..++.|.|+|.|..
T Consensus         3 ~~LGv~~~~~~~----~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~--~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1           3 ASLGVQVTNDKD----TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             EECCEEEECCC-----CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CEEeEEEEecCC----CCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            468999875433    3489999999999999999 999999999999999875  44455554  45789999999853

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.68  E-value=2.1e-08  Score=85.48  Aligned_cols=60  Identities=20%  Similarity=0.317  Sum_probs=53.2

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGA  332 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~  332 (684)
                      ..+++|..+.  +||++.| |++||+|++|||.++.++++.+++.+|+. .+..|+|.|.|++.
T Consensus        18 ~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3          18 GKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             SSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             CceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            3468888886  8999988 99999999999999999999999999984 66789999999764

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=3.9e-08  Score=83.01  Aligned_cols=61  Identities=20%  Similarity=0.349  Sum_probs=55.1

Q ss_pred             cccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       118 ~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      ..|++|..|.|+|||+++| |++||.|++|||.++.+  ..++..++++.+..+.|+|.|....
T Consensus        24 ~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~~~~   84 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGDST   84 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECSS--HHHHHHHTTTCCSCCCEEEESSSCE
T ss_pred             CCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCEEEEEEEECCEE
Confidence            4589999999999999999 99999999999999974  6889999999999999999998643

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.4e-07  Score=81.14  Aligned_cols=67  Identities=19%  Similarity=0.395  Sum_probs=49.3

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCccccccccc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAIYHGLATL  188 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~~~~~~stl  188 (684)
                      .|++|..|.++|||+++| |++||.|++|||.++.+..  +....|.  ..++.+.|+|.|+........++
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l   94 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTI   94 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCSH--HHHHHHHHSCTTCEEEECC-----CCCEEEEC
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecccHH--HHHHHHHcCCCCCEEEEEEEECCEEEEEEEEE
Confidence            379999999999999999 9999999999999998864  4445554  45789999999987654443333

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.27  E-value=1.2e-06  Score=74.71  Aligned_cols=59  Identities=14%  Similarity=0.206  Sum_probs=50.5

Q ss_pred             cEEEEEecCC--------ChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc-CCCEEEEEEEecCc
Q psy2533         120 GIYIKSVVKG--------GAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGA  180 (684)
Q Consensus       120 gIfIs~V~pG--------GpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~-sg~~V~LvV~R~~~  180 (684)
                      ++.|.+|.+|        |||+++|.+++||+|++|||.++.+..  +++.+|+. .+..|.|+|.|...
T Consensus        13 ~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~~--~~~~~l~g~~G~~V~L~i~R~g~   80 (91)
T d1k32a1          13 HYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKGG   80 (91)
T ss_dssp             EEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSSS
T ss_pred             eEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCcc--eeEEEEecCCCCEEEEEEEeCCC
Confidence            6899999998        999999933899999999999998764  67788875 47889999999653

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=8.6e-07  Score=75.70  Aligned_cols=60  Identities=25%  Similarity=0.407  Sum_probs=53.0

Q ss_pred             cccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHcCCCEEEEEEEecCcc
Q psy2533         118 RLGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAI  181 (684)
Q Consensus       118 ~~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~sg~~V~LvV~R~~~~  181 (684)
                      ..|++|..|.++|||+++| |++||.|++|||.++.+  ..+...+++ .+..+.|.|.|....
T Consensus        30 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s--~~dl~~~l~-~g~~v~l~v~R~g~~   89 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVR-TQSQLAVQIRRGRET   89 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHT-TCSSEEEEEEETTEE
T ss_pred             CCcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCC--HHHHHHHhc-CCCEEEEEEEECCEE
Confidence            3589999999999999999 99999999999999975  567888885 678899999998754

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=4.8e-07  Score=76.95  Aligned_cols=60  Identities=20%  Similarity=0.427  Sum_probs=51.1

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~~~  181 (684)
                      .|++|..|.++|||+++| |++||.|++|||.++.+.  .+...+|..  .+..+.|.|.|....
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~   88 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQ   88 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCE
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            479999999999999999 999999999999999886  445566654  478899999998643

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.8e-06  Score=72.52  Aligned_cols=61  Identities=18%  Similarity=0.261  Sum_probs=51.1

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ...|++|.+|.  ++|++.| |++||+|++|||+.+.  +.++...+++..+..|.|.|.|.+..+
T Consensus        23 ~~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~~~~   85 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDSTI   85 (88)
T ss_dssp             TTSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSSCEE
T ss_pred             CCCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECCEEE
Confidence            45678888887  6777766 9999999999999997  457888999989999999999987543

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=4.3e-06  Score=69.97  Aligned_cols=59  Identities=14%  Similarity=0.129  Sum_probs=46.7

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGA  332 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~  332 (684)
                      ...|+||.+|.  ++|++.| |++||+|++|||..+.++.  +...++..  .++.|+|.|.|+..
T Consensus        14 ~~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~~--~~~~~i~~~~~g~~v~l~v~r~~g   76 (88)
T d2z9ia1          14 DTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSAD--ALVAAVRSKAPGATVALTFQDPSG   76 (88)
T ss_dssp             -CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSHH--HHHHHHHTSCTTCEEEEEEEETTT
T ss_pred             CCCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcHH--HHHHHHHhCCCCCEEEEEEEECCC
Confidence            34689999998  7888877 9999999999999998654  44555544  57899999999643

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.91  E-value=3.1e-06  Score=73.24  Aligned_cols=56  Identities=21%  Similarity=0.320  Sum_probs=49.1

Q ss_pred             cEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHHc--CCCEEEEEEEecC
Q psy2533         120 GIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQG  179 (684)
Q Consensus       120 gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk~--sg~~V~LvV~R~~  179 (684)
                      |++|..|.+|+||+. + |++||+|++|||..+.+  ..+...+|..  .|..|.|.|.|..
T Consensus         4 Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~~--~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           4 GVQIDSVVPGSPASK-V-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CEEEEEECSSSGGGG-T-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             cEEEEEECCCChHHh-c-CCCCCEEEEECCEEcCC--HHHHHHHHhhCCCCCEEEEEEEECC
Confidence            799999999999975 6 99999999999999975  6788888865  4889999998864

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.87  E-value=4.6e-06  Score=70.09  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=51.0

Q ss_pred             ccEEEEEecCCChhcccCccccCCeeeecCCeecCCCCHHHHHHHHH--cCCCEEEEEEEecCcc
Q psy2533         119 LGIYIKSVVKGGAADANGRLQAGDQLLKVDGQSLVGITQEKAAEYLV--RTGPIVTLEIAKQGAI  181 (684)
Q Consensus       119 ~gIfIs~V~pGGpA~r~GrLqvGDrILaVNG~sl~g~sh~eAV~lLk--~sg~~V~LvV~R~~~~  181 (684)
                      .|+.|..+.++++|+++| |++||.|++|||.++.+.  .+...++.  ..+..+.|.|.|.+..
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~--~~~~~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeecH--HHHHHHHHhhccccccEEEEEECCEE
Confidence            478899999999999999 999999999999999875  45555654  3588999999998754

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.2e-05  Score=65.59  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=49.0

Q ss_pred             CCCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Q psy2533         271 ADPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVRTGPIVTLEIAKQGAIY  334 (684)
Q Consensus       271 ~d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~sg~~VtL~V~R~~~~~  334 (684)
                      ...|++|..+.  ++|++.| |++||.|++|||..+.+  ..+...+++ .++.+.|.|.|.+...
T Consensus        29 ~~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s--~~dl~~~l~-~g~~v~l~v~R~g~~~   90 (100)
T d1lcya1          29 VQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVR-TQSQLAVQIRRGRETL   90 (100)
T ss_dssp             CSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHT-TCSSEEEEEEETTEEE
T ss_pred             CCCcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCC--HHHHHHHhc-CCCEEEEEEEECCEEE
Confidence            45689999998  6777765 99999999999999975  457777775 6889999999987543

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.52  E-value=8.4e-05  Score=62.87  Aligned_cols=51  Identities=14%  Similarity=0.147  Sum_probs=42.0

Q ss_pred             hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh-CCCeEEEEEEeCCccc
Q psy2533         282 VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR-TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       282 GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~-sg~~VtL~V~R~~~~~  334 (684)
                      +||++.|-+++||+|++|||+++.++.  +++.+|+. .+..|+|.|.|.+...
T Consensus        31 sPa~~aGl~k~GD~I~~IdG~~v~~~~--~~~~~l~g~~G~~V~L~i~R~g~~~   82 (91)
T d1k32a1          31 SPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKGGDK   82 (91)
T ss_dssp             CGGGGGTCCCTTCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSSSCE
T ss_pred             ChhHhcCCCCCCCEEEEECCEeecCcc--eeEEEEecCCCCEEEEEEEeCCCCE
Confidence            678888744899999999999999875  67788876 5678999999976543

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=2.3e-05  Score=66.90  Aligned_cols=60  Identities=12%  Similarity=0.245  Sum_probs=41.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCccc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAIY  334 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~~  334 (684)
                      ..|++|.+|.  ++|++.| |++||+|++|||..+.++.  +....|..  .++.+.|.|.|.+...
T Consensus        25 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~   88 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDKQL   88 (99)
T ss_dssp             --CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCSH--HHHHHHHHSCTTCEEEECC-----CC
T ss_pred             CCccEEEEecCCCCHHHcC-CCcceEEEEECCEecccHH--HHHHHHHcCCCCCEEEEEEEECCEEE
Confidence            4578888887  6676666 9999999999999998875  44444533  5788999999987544

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.33  E-value=0.00013  Score=60.87  Aligned_cols=59  Identities=14%  Similarity=0.073  Sum_probs=44.1

Q ss_pred             CCcEEEecc-hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533         273 PERFYQNLS-VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  333 (684)
Q Consensus       273 ~GIFV~sI~-GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~  333 (684)
                      .|.+|..+. +..+..++|++||+|++|||..+.+..  +...++..  .++.++|.|.|.+..
T Consensus        19 ~G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~v~~~~--~~~~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHH--HHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEEecCCCCCHHHHCCCCCCCEEEEECCEEeecHH--HHHHHHHhhccccccEEEEEECCEE
Confidence            466777776 444444559999999999999998764  45555544  678999999998754

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=2.4e-05  Score=66.11  Aligned_cols=59  Identities=17%  Similarity=0.339  Sum_probs=46.5

Q ss_pred             CCCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCCcc
Q psy2533         272 DPERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQGAI  333 (684)
Q Consensus       272 d~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~~~  333 (684)
                      ..|+||..|.  ++|++.| |++||+|++|||..+.++.  +...+|..  .++.+.|.|.|.+..
T Consensus        26 ~~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~   88 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFA--ALRAQVGTMPVGSKLTLGLLRDGKQ   88 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSSH--HHHHHTTSSBTTCCCEEEEESSSCE
T ss_pred             CCCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCHH--HHHHHHHhCCCCCEEEEEEEECCEE
Confidence            3589999987  6666666 9999999999999998875  44555654  467899999997653

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.29  E-value=6.5e-05  Score=64.65  Aligned_cols=55  Identities=9%  Similarity=0.097  Sum_probs=44.9

Q ss_pred             CCcEEEecc--hhhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHh--CCCeEEEEEEeCC
Q psy2533         273 PERFYQNLS--VYRNQNGRLQAGDQLLKVDGQSLVGITQEKAAEYLVR--TGPIVTLEIAKQG  331 (684)
Q Consensus       273 ~GIFV~sI~--GaAardGrLr~GDqIL~VNG~sl~g~Th~eAv~lLk~--sg~~VtL~V~R~~  331 (684)
                      .|++|.+|.  ++|+ .+ |++||+|++|||..+.+  ..+...+|..  .|+.|+|.|.|.+
T Consensus         3 ~Gv~V~~V~~~sPA~-~~-L~~GD~I~~ing~~v~~--~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           3 DGVQIDSVVPGSPAS-KV-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCEEEEEECSSSGGG-GT-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CcEEEEEECCCChHH-hc-CCCCCEEEEECCEEcCC--HHHHHHHHhhCCCCCEEEEEEEECC
Confidence            389999997  5665 46 99999999999999975  5577788765  4789999998864