Psyllid ID: psy2540

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------
Protein Sequence
MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHEEEccHHHHcccHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVSKLFAQVSitvpvqrvtKYPLLLARLYKvtpdhhtgkDLLIEAQHNIQLHLEHINS
Flexible Loop (DISEMBL)
mvsklfaqvsitvpvqrvtKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS
Low Complexity Region (SEG)
MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS
Disordered region (IsUnstruct)
****LFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHL*****
Disordered Region (DISOPRED)
**SK*FAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN*
Disordered Region (DISEMBL)
MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS
Disordered Region (DISPRO)
*VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	58	2.2.26 [Sep-21-2011]
Q96PE2	2063	Rho guanine nucleotide ex	yes	N/A	0.758	0.021	0.5	8e-05
Q80U35	2057	Rho guanine nucleotide ex	yes	N/A	0.758	0.021	0.477	0.0002

>sp|Q96PE2|ARHGH_HUMAN Rho guanine nucleotide exchange factor 17 OS=Homo sapiens GN=ARHGEF17 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query: 14   PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
            PVQR+ +Y LL+  L K TP+ H    LL+EAQ NI+   E IN
Sbjct: 1209 PVQRIPRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERIN 1252

Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPases.
Homo sapiens (taxid: 9606)

>sp|Q80U35|ARHGH_MOUSE Rho guanine nucleotide exchange factor 17 OS=Mus musculus GN=Arhgef17 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 14   PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
            PVQR+ +Y LL+  L K TP+ H    LL++AQ NI+   E IN
Sbjct: 1202 PVQRIPRYELLVKDLLKHTPEDHPDHPLLLDAQRNIKQVAERIN 1245

Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPases.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
328712038	1423	PREDICTED: hypothetical protein LOC10016	0.827	0.033	0.755	2e-13
270004431	1372	hypothetical protein TcasGA2_TC003783 [T	1.0	0.042	0.620	2e-12
194747529	2011	GF25091 [Drosophila ananassae] gi|190623	0.810	0.023	0.744	2e-12
91079530	1367	PREDICTED: similar to conserved hypothet	1.0	0.042	0.620	2e-12
16768248	599	GH26207p [Drosophila melanogaster]	0.810	0.078	0.723	4e-12
194866751	1979	GG15246 [Drosophila erecta] gi|190653722	0.810	0.023	0.723	5e-12
195587854	1979	GD13862 [Drosophila simulans] gi|1941956	0.810	0.023	0.723	5e-12
242013572	1752	Rho/RAC guanine nucleotide exchange fact	0.827	0.027	0.708	5e-12
195491863	2008	GE21468 [Drosophila yakuba] gi|194179847	0.810	0.023	0.723	5e-12
24657996	1984	guanine nucleotide exchange factor GEF64	0.810	0.023	0.723	5e-12

>gi|328712038|ref|XP_001948480.2| PREDICTED: hypothetical protein LOC100162220 [Acyrthosiphon pisum]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/49 (75%), Positives = 41/49 (83%), Gaps = 1/49 (2%)

Query: 11   ITVPVQRVTKYPLLLARLYKVTPDHH-TGKDLLIEAQHNIQLHLEHINS 58
            + VPVQRVTKYPLLLARLYKVTP+HH   +  L EA+H IQLHLEHINS
Sbjct: 1173 LMVPVQRVTKYPLLLARLYKVTPEHHLEARQTLNEARHKIQLHLEHINS 1221

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004431|gb|EFA00879.1| hypothetical protein TcasGA2_TC003783 [Tribolium castaneum]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 44/58 (75%)

Query: 1    MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
            M+ ++     + VPVQRVTKYPLLLARLYKVTP HH  ++ L EAQH I+LHL H+NS
Sbjct: 1112 MLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTPVHHETREQLKEAQHKIELHLNHMNS 1169

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747529|ref|XP_001956204.1| GF25091 [Drosophila ananassae] gi|190623486|gb|EDV39010.1| GF25091 [Drosophila ananassae]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 11   ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
            + VPVQRVTKYPLLLARLYKVTP+H  G+DLL +AQ  I+LHL HIN
Sbjct: 1759 LMVPVQRVTKYPLLLARLYKVTPNHLDGRDLLKQAQEKIELHLNHIN 1805

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079530|ref|XP_970505.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 44/58 (75%)

Query: 1    MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
            M+ ++     + VPVQRVTKYPLLLARLYKVTP HH  ++ L EAQH I+LHL H+NS
Sbjct: 1107 MLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTPVHHETREQLKEAQHKIELHLNHMNS 1164

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16768248|gb|AAL28343.1| GH26207p [Drosophila melanogaster]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           + VPVQRVTKYPLLLARLYKVTP H  G++LL +AQ  I+LHL HIN
Sbjct: 347 LMVPVQRVTKYPLLLARLYKVTPSHLEGRELLKQAQEKIELHLNHIN 393

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194866751|ref|XP_001971939.1| GG15246 [Drosophila erecta] gi|190653722|gb|EDV50965.1| GG15246 [Drosophila erecta]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 11   ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
            + VPVQRVTKYPLLLARLYKVTP H  G++LL +AQ  I+LHL HIN
Sbjct: 1727 LMVPVQRVTKYPLLLARLYKVTPSHLDGRELLKQAQEKIELHLNHIN 1773

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195587854|ref|XP_002083676.1| GD13862 [Drosophila simulans] gi|194195685|gb|EDX09261.1| GD13862 [Drosophila simulans]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 11   ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
            + VPVQRVTKYPLLLARLYKVTP H  G++LL +AQ  I+LHL HIN
Sbjct: 1727 LMVPVQRVTKYPLLLARLYKVTPSHLEGRELLKQAQEKIELHLNHIN 1773

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013572|ref|XP_002427478.1| Rho/RAC guanine nucleotide exchange factor, putative [Pediculus humanus corporis] gi|212511867|gb|EEB14740.1| Rho/RAC guanine nucleotide exchange factor, putative [Pediculus humanus corporis]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 39/48 (81%)

Query: 11   ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
            + VPVQRVTKYPLLLARLYKVTP     ++ L EAQH I+LHLEH+NS
Sbjct: 1496 LMVPVQRVTKYPLLLARLYKVTPVQQENRETLKEAQHKIELHLEHMNS 1543

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491863|ref|XP_002093746.1| GE21468 [Drosophila yakuba] gi|194179847|gb|EDW93458.1| GE21468 [Drosophila yakuba]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 11   ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
            + VPVQRVTKYPLLLARLYKVTP H  G++LL +AQ  I+LHL HIN
Sbjct: 1756 LMVPVQRVTKYPLLLARLYKVTPSHLEGRELLKQAQEKIELHLNHIN 1802

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24657996|ref|NP_729032.1| guanine nucleotide exchange factor GEF64C, isoform A [Drosophila melanogaster] gi|442630280|ref|NP_001261425.1| guanine nucleotide exchange factor GEF64C, isoform B [Drosophila melanogaster] gi|23093033|gb|AAF47940.2| guanine nucleotide exchange factor GEF64C, isoform A [Drosophila melanogaster] gi|440215313|gb|AGB94120.1| guanine nucleotide exchange factor GEF64C, isoform B [Drosophila melanogaster]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 11   ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
            + VPVQRVTKYPLLLARLYKVTP H  G++LL +AQ  I+LHL HIN
Sbjct: 1732 LMVPVQRVTKYPLLLARLYKVTPSHLEGRELLKQAQEKIELHLNHIN 1778

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
FB|FBgn0035574	1984	RhoGEF64C "Rho guanine nucleot	0.810	0.023	0.723	6.8e-12
UNIPROTKB|F1NT43	463	LOC424241 "Uncharacterized pro	0.810	0.101	0.531	1.1e-07
ZFIN|ZDB-GENE-050208-441	1093	si:dkey-91i10.2 "si:dkey-91i10	0.810	0.043	0.510	3.1e-06
UNIPROTKB|Q96PE2	2063	ARHGEF17 "Rho guanine nucleoti	0.758	0.021	0.5	0.00052
UNIPROTKB|J9PAI0	1743	ARHGEF17 "Uncharacterized prot	0.758	0.025	0.477	0.0009

FB|FBgn0035574 RhoGEF64C "Rho guanine nucleotide exchange factor at 64C" [Drosophila melanogaster (taxid:7227)]

 Score = 177 (67.4 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query:    11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
             + VPVQRVTKYPLLLARLYKVTP H  G++LL +AQ  I+LHL HIN
Sbjct:  1732 LMVPVQRVTKYPLLLARLYKVTPSHLEGRELLKQAQEKIELHLNHIN 1778

GO:0007411 "axon guidance" evidence=IMP

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=NAS

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035277 "spiracle morphogenesis, open tracheal system" evidence=IGI

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

UNIPROTKB|F1NT43 LOC424241 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query:    11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
             +  P+QRVTKYPLLL+R+ K T ++H     L EA+  I+ HLEHIN
Sbjct:   221 LMAPLQRVTKYPLLLSRIIKATTEYHPDHGSLREAKSRIESHLEHIN 267

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

ZFIN|ZDB-GENE-050208-441 si:dkey-91i10.2 "si:dkey-91i10.2" [Danio rerio (taxid:7955)]

 Score = 121 (47.7 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query:    11 ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
             +  P+QRVTKYPLLL+R+ K T + H     L EA+  ++ HLEHIN
Sbjct:   848 LMAPLQRVTKYPLLLSRISKATNECHPDYPRLKEAKSRVESHLEHIN 894

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q96PE2 ARHGEF17 "Rho guanine nucleotide exchange factor 17" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 0.00052, P = 0.00052
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query:    14 PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
             PVQR+ +Y LL+  L K TP+ H    LL+EAQ NI+   E IN
Sbjct:  1209 PVQRIPRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERIN 1252

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

UNIPROTKB|J9PAI0 ARHGEF17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 0.00090, P = 0.00090
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query:    14 PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
             PVQR+ +Y LL+  L K TP+ H    LL++AQ NI+   E IN
Sbjct:   890 PVQRIPRYELLVKDLLKHTPEDHPDHPLLLDAQRNIKQVAERIN 933


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       58        58   0.00091  102 3  11 22  0.44    27
                                                     29  0.47    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  434 (46 KB)
  Total size of DFA:  75 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.89u 0.08s 6.97t   Elapsed:  00:00:18
  Total cpu time:  6.89u 0.08s 6.97t   Elapsed:  00:00:18
  Start:  Thu Aug 15 13:56:40 2013   End:  Thu Aug 15 13:56:58 2013

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	58
cd00160	181	cd00160, RhoGEF, Guanine nucleotide exchange facto	9e-10
pfam00621	179	pfam00621, RhoGEF, RhoGEF domain	2e-09
smart00325	180	smart00325, RhoGEF, Guanine nucleotide exchange fa	6e-09

>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain

 Score = 50.8 bits (122), Expect = 9e-10
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           +  PVQR+TKYPLLL  L K TPD H  ++ L +A   I+     +N
Sbjct: 135 LLKPVQRLTKYPLLLKELLKHTPDGHEDREDLKKALEAIKEVASQVN 181

It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Length = 181

>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain

 Score = 49.9 bits (120), Expect = 2e-09
 Identities = 19/44 (43%), Positives = 24/44 (54%)

Query: 14  PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           PVQR+ +YPLLL  L K TP  H   + L +A   I+     IN
Sbjct: 135 PVQRIPRYPLLLKELLKHTPPDHPDYEDLKKALEAIKEVASQIN 178

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains. Length = 179

>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

 Score = 48.5 bits (116), Expect = 6e-09
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           +  PVQR+TKYPLLL  L K TP+ H  ++ L +A   I+     +N
Sbjct: 133 LLKPVQRLTKYPLLLKELLKHTPEDHEDREDLKKALKAIKELANQVN 179

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	58
cd00160	181	RhoGEF Guanine nucleotide exchange factor for Rho/	99.8
smart00325	180	RhoGEF Guanine nucleotide exchange factor for Rho/	99.79
PF00621	180	RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho	99.69
KOG4424|consensus	623		99.65
KOG3523|consensus	695		99.6
KOG4305|consensus	1029		99.51
KOG3520|consensus	1167		99.36
KOG2996|consensus	865		99.35
KOG3518|consensus	521		99.32
KOG3521|consensus	846		99.24
KOG3519|consensus	756		99.11
KOG0689|consensus	448		99.09
KOG3522|consensus	925		98.79
COG5422	1175	ROM1 RhoGEF, Guanine nucleotide exchange factor fo	98.68
KOG3524|consensus	850		98.44
KOG2070|consensus	661		98.41
KOG4240|consensus	1025		98.4
KOG3531|consensus	1036		97.56
KOG4269|consensus	1112		95.42
KOG3524|consensus	850		85.17
PF15601	134	Imm42: Immunity protein 42	82.84

>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain

Probab=99.80  E-value=1.4e-19  Score=105.15  Aligned_cols=56  Identities=39%  Similarity=0.549  Sum_probs=54.3

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN   57 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN   57 (58)
                      .+++++.+||++|+||++||++||++++|+|+++|+|+..+++|++.+++++.+||
T Consensus       126 ~~~~~l~~~L~~PvQRl~rY~lLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN  181 (181)
T cd00160         126 CGRLKLESLLLKPVQRLTKYPLLLKELLKHTPDGHEDREDLKKALEAIKEVASQVN  181 (181)
T ss_pred             cccCCHHHHhhhhHHHhchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            46889999999999999999999999999999999999999999999999999998

It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

Probab=99.79  E-value=2.7e-19  Score=103.87  Aligned_cols=56  Identities=38%  Similarity=0.558  Sum_probs=54.2

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++.+||++|+||++||++||++++|+|+++|+|+..+++|++.++.++..||+
T Consensus       125 ~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iNe  180 (180)
T smart00325      125 RRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHEDREDLKKALKAIKELANQVNE  180 (180)
T ss_pred             ccCCHHHHHhHHHHHhccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999999999999999999999999999999999999995

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.

>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes

Probab=99.69  E-value=4.5e-17  Score=93.66  Aligned_cols=57  Identities=37%  Similarity=0.560  Sum_probs=54.3

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      .+++++.+++.+|+||++||+++|++++++|+++|+|+..+++|+..++++...||+
T Consensus       124 ~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~~~~~d~~~L~~a~~~i~~l~~~in~  180 (180)
T PF00621_consen  124 SKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTPPDHPDYKSLQKALDQIKELIQHINE  180 (180)
T ss_dssp             CTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSSTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhCc
Confidence            357899999999999999999999999999999999999999999999999999984

Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....

>KOG4424|consensus

Probab=99.65  E-value=1.7e-16  Score=106.69  Aligned_cols=57  Identities=28%  Similarity=0.298  Sum_probs=55.5

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |.+|+|+++++.|||||+||.|||+++++++|++++|+.++++|++.|...+.++|+
T Consensus       185 cg~l~LqhhMiePVQRIPRYeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNa  241 (623)
T KOG4424|consen  185 CGGLKLQHHMIEPVQRVPRYELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNA  241 (623)
T ss_pred             cCCccchhheechhhhhhHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999995

>KOG3523|consensus

Probab=99.60  E-value=1.5e-15  Score=102.70  Aligned_cols=57  Identities=23%  Similarity=0.323  Sum_probs=55.5

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++|+|.|||+.|+|||||+|||++.+++.|.+.+++|+...+|+.+++.++..+|+
T Consensus       384 C~~Lpl~SFLiLPmQRITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe  440 (695)
T KOG3523|consen  384 CQGLPLRSFLILPMQRITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNE  440 (695)
T ss_pred             ccCCCchhhhhchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999984

>KOG4305|consensus

Probab=99.51  E-value=1.7e-14  Score=101.72  Aligned_cols=57  Identities=37%  Similarity=0.485  Sum_probs=54.2

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhC-CCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVT-PDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t-~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++++|.+||.+|+||+.||||++++++||| |++|||++.+.+|+..+++++.+||.
T Consensus       465 ~rkl~L~~FL~kp~sRl~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~  522 (1029)
T KOG4305|consen  465 SRKLDLVSFLTKPTSRLQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQ  522 (1029)
T ss_pred             hhccchhhhhccccchhheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhCh
Confidence            6889999999999999999999999999999 66779999999999999999999994

>KOG3520|consensus

Probab=99.36  E-value=7.7e-13  Score=94.11  Aligned_cols=58  Identities=33%  Similarity=0.442  Sum_probs=55.4

Q ss_pred             CCccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           1 MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         1 ~~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      .|++|.|.++++.-+||+|||||||+.|+|||.++..|++.++.|++.+++|+..||+
T Consensus       522 ~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~  579 (1167)
T KOG3520|consen  522 VCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQ  579 (1167)
T ss_pred             HHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999987788999999999999999999984

>KOG2996|consensus

Probab=99.35  E-value=8.6e-13  Score=89.85  Aligned_cols=54  Identities=37%  Similarity=0.389  Sum_probs=49.2

Q ss_pred             cCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           4 KLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         4 ~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +.+|.++|.-|+||+.||+|||++|.|||.+.. +...++.|+++|++++..||+
T Consensus       322 kF~l~DLL~VPmQRvlKYhLLLkEL~kht~~a~-ek~~LkeAleaM~Dla~yiNE  375 (865)
T KOG2996|consen  322 KFTLRDLLVVPMQRVLKYHLLLKELVKHTDEAS-EKRNLKEALEAMEDLAQYINE  375 (865)
T ss_pred             ceeeceeeeeeHHHHHHHHHHHHHHHHhcccCC-hhhhHHHHHHHHHHHHHHHhH
Confidence            678999999999999999999999999997655 555999999999999999995

>KOG3518|consensus

Probab=99.32  E-value=3.4e-12  Score=82.99  Aligned_cols=55  Identities=31%  Similarity=0.405  Sum_probs=51.1

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCC-Cc-cHHHHHHHHHHHHHHHHHhc
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDH-HT-GKDLLIEAQHNIQLHLEHIN   57 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~-~~-d~~~l~~a~~~~~~~~~~iN   57 (58)
                      ..|+|++||++|||||.+|.|+|+++.+|.+.+ || ++..+.+|.+.|+.++++||
T Consensus       246 hsl~l~ayllkpvqrilkyhlfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~in  302 (521)
T KOG3518|consen  246 HSLPLGAYLLKPVQRILKYHLFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHIN  302 (521)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence            468999999999999999999999999999865 55 78899999999999999999

>KOG3521|consensus

Probab=99.24  E-value=7.7e-12  Score=85.87  Aligned_cols=56  Identities=27%  Similarity=0.439  Sum_probs=52.1

Q ss_pred             CCccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540           1 MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN   57 (58)
Q Consensus         1 ~~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN   57 (58)
                      +|.++.|.|.+++|+||+|||+|||+.++|+|+ +..+.+.+...+..++.++.+||
T Consensus       312 ~c~RqkL~D~l~kPmQRLTKY~LLLkAVlK~t~-d~~e~Eai~aMi~svEsf~~~vN  367 (846)
T KOG3521|consen  312 NCDRQKLIDTLSKPMQRLTKYPLLLKAVLKVTT-DEREREAISAMIDSVESFTAHVN  367 (846)
T ss_pred             hhhhHHHHHHhhhHHHHhhhhHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999995 56689999999999999999998

>KOG3519|consensus

Probab=99.11  E-value=4.5e-11  Score=82.94  Aligned_cols=54  Identities=31%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             CCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           5 LFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         5 l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      .+|++|+++|+||+++|||+++++++.|+.++.||..+..|...++.+...||.
T Consensus       468 ~~L~s~l~~pvqri~kYPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe  521 (756)
T KOG3519|consen  468 SSLSSFLLKPVQRICKYPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINE  521 (756)
T ss_pred             CCchhhhccHHHHhccCchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhh
Confidence            689999999999999999999999999999999999999999999999999994

>KOG0689|consensus

Probab=99.09  E-value=1.6e-10  Score=76.62  Aligned_cols=55  Identities=31%  Similarity=0.410  Sum_probs=51.3

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN   57 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN   57 (58)
                      .++++.+|+++||||++||++||+++++.+...-.|...+.+|.+.|..+..++|
T Consensus       184 ~~l~l~~~l~kPiQR~~kYqlLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~  238 (448)
T KOG0689|consen  184 HKLDLSSYLIKPVQRIMKYQLLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCN  238 (448)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhH
Confidence            4689999999999999999999999999998888999999999999999988776

>KOG3522|consensus

Probab=98.79  E-value=7.1e-09  Score=72.72  Aligned_cols=47  Identities=32%  Similarity=0.411  Sum_probs=44.7

Q ss_pred             hhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           9 VSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         9 ~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      .|+++|  |+++|.++++ ++||||.+|||+..|+.|...+.+++.++|+
T Consensus       120 ~l~~kP--r~P~y~lll~-mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine  166 (925)
T KOG3522|consen  120 ELMIKP--RFPRYELLLQ-MLKHTPLDHPDRLILQLALTLLETLAEKINE  166 (925)
T ss_pred             HHHhcc--CCchHHHHHH-HhhcCCcCCCchHHHHHHHHhhHHHHHHHhh
Confidence            367999  9999999999 9999999999999999999999999999984

>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]

Probab=98.68  E-value=2.1e-08  Score=70.96  Aligned_cols=55  Identities=25%  Similarity=0.388  Sum_probs=52.4

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN   57 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN   57 (58)
                      +++.+.+||-+|.-|..||++|+++++++|.++.||++++-++++.++++...+|
T Consensus       615 ~k~~ld~yLtk~~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~  669 (1175)
T COG5422         615 RKLELDGYLTKPTTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLN  669 (1175)
T ss_pred             hhhcccceecCCcccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999999887

>KOG3524|consensus

Probab=98.44  E-value=2.8e-07  Score=64.18  Aligned_cols=55  Identities=31%  Similarity=0.336  Sum_probs=51.1

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |.+.+|.+.++.|+||++...++|+++.|  ..+++|+..+++|..+++++..+||+
T Consensus       506 cgRq~l~dlmirpvqrlpsvilllndl~k--~s~N~dk~~leea~kaikev~khIne  560 (850)
T KOG3524|consen  506 CGRQKLTDLMIRPVQRLPSVILLLNDMAK--KSDNKDKNNLEEAAKAIKEVLKHINE  560 (850)
T ss_pred             hhhhcccchhccchhhhhHHHHHHHHHHh--hccCcchhhHHHhhhhHHHHHHHhch
Confidence            56789999999999999999999999999  35788999999999999999999995

>KOG2070|consensus

Probab=98.41  E-value=6.5e-07  Score=60.69  Aligned_cols=49  Identities=20%  Similarity=0.318  Sum_probs=44.6

Q ss_pred             chhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHh
Q psy2540           8 QVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHI   56 (58)
Q Consensus         8 ~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~i   56 (58)
                      ..=|.+|+.|+.||+-||++|-+|++..|||+.+++++....+++...+
T Consensus       230 ttgLSkPfrrldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~C  278 (661)
T KOG2070|consen  230 TTGLSKPFRRLDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQC  278 (661)
T ss_pred             ecccchHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence            3346799999999999999999999999999999999999999888765

>KOG4240|consensus

Probab=98.40  E-value=3.3e-07  Score=65.57  Aligned_cols=51  Identities=33%  Similarity=0.402  Sum_probs=43.4

Q ss_pred             CCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           5 LFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         5 l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++.+|+++|+|||++|.++|+++++.+-+   .-..+.+|++.|-.+...+|.
T Consensus       757 l~~~S~l~kpvqritkYqlllkell~~c~e---~~~~lkd~l~~ml~v~k~~nd  807 (1025)
T KOG4240|consen  757 LSISSYLIKPVQRITKYQLLLKELLKCCCE---GTGDLKDALEVMLSVPKKVND  807 (1025)
T ss_pred             hhhHHHHhHHHHHHHHHHHHHHHHHHhhhh---chHHHHHHHHHHHhhhhhccc
Confidence            478899999999999999999999995533   456788999999999888873

>KOG3531|consensus

Probab=97.56  E-value=2.4e-05  Score=55.72  Aligned_cols=49  Identities=20%  Similarity=0.157  Sum_probs=43.0

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHH
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQL   51 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~   51 (58)
                      ..|++..|+.+|++|+..|.+.|+.|..|.+++|.||.+...+...+.+
T Consensus       667 cyLP~~~fllkpL~rllhyq~~LeRLc~~~~~~h~d~ad~~a~~~~~~~  715 (1036)
T KOG3531|consen  667 CYLPLNTFLLKPLSRLLHYQLALERLCGHYSPTHEDFADCKAKPNPITE  715 (1036)
T ss_pred             cccccchhhhccccHHHHHHHHHHHhhcccCCCccchHHHhhccccccc
Confidence            4689999999999999999999999999999999999887766554433

>KOG4269|consensus

Probab=95.42  E-value=0.033  Score=40.71  Aligned_cols=52  Identities=29%  Similarity=0.261  Sum_probs=46.8

Q ss_pred             cchhhhhhhhhhhchHHHHHHHHhhCCCCCccHH----------HHHHHHHHHHHHHHHhcC
Q psy2540           7 AQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKD----------LLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         7 L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~----------~l~~a~~~~~~~~~~iN~   58 (58)
                      ..-.|-+|+-|+++..+-+.+++|++|-.|||+-          .+++|+...+.++..||+
T Consensus       475 ~~~~l~rpi~~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~  536 (1112)
T KOG4269|consen  475 EEWLLYRPIDRVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDE  536 (1112)
T ss_pred             hhhhhccchhhhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3456789999999999999999999999999887          899999999999998874

>KOG3524|consensus

Probab=85.17  E-value=0.42  Score=34.46  Aligned_cols=56  Identities=9%  Similarity=0.008  Sum_probs=46.4

Q ss_pred             CCccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           1 MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         1 ~~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      ||+....-..++.|++++.+  .....+.+++.+..++...+..++..-++..+++|+
T Consensus       515 mirpvqrlpsvilllndl~k--~s~N~dk~~leea~kaikev~khInedKrkte~~~~  570 (850)
T KOG3524|consen  515 MIRPVQRLPSVILLLNDMAK--KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFIS  570 (850)
T ss_pred             hccchhhhhHHHHHHHHHHh--hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHH
Confidence            45555666678999999999  888888889988889999999999988888777653

>PF15601 Imm42: Immunity protein 42

Probab=82.84  E-value=3.4  Score=23.94  Aligned_cols=39  Identities=21%  Similarity=0.225  Sum_probs=28.8

Q ss_pred             hhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHH
Q psy2540          12 TVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLE   54 (58)
Q Consensus        12 ~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~   54 (58)
                      +.+-.-=+|||+|++++..    ..-.++++.+|.+.++++-.
T Consensus        29 lE~~~wGskfP~Lm~~LY~----g~L~~~~~~~A~~eL~~I~~   67 (134)
T PF15601_consen   29 LENEGWGSKFPLLMNELYR----GYLRYEELEKALKELEEIRK   67 (134)
T ss_pred             hhccCCCCcchHHHHHHHc----CCCCHHHHHHHHHHHHHHHH
Confidence            4455555799999999944    34568888888888887754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	58
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	5e-11
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	3e-10
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	3e-10
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	5e-10
1by1_A	209	Protein (PIX); RHO-GTPase exchange factor, transpo	7e-10
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	1e-09
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	2e-09
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	3e-09
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	4e-09
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	4e-09
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	6e-09
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	8e-09
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	1e-08
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	1e-08
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	3e-08
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	9e-08
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	1e-07
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	3e-06
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	6e-06

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 54.0 bits (130), Expect = 5e-11
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           I  P+QRVT+YPL++  + + TP++H     L  A    +     +N
Sbjct: 220 ILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVN 266

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346

 Score = 52.5 bits (126), Expect = 3e-10
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           + +P  R+ KYPLLL  + + TP+ +  +  L EA + IQ  +  IN
Sbjct: 153 LDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEIN 199

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377

 Score = 52.3 bits (125), Expect = 3e-10
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 13  VPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
            P+QRV KYPLLL  L+ +T         L  A   +     HIN
Sbjct: 159 KPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHIN 203

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score = 51.6 bits (123), Expect = 5e-10
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 13  VPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           VP+QRV KY LLL  L K T +    K+ L  A   ++   + +N
Sbjct: 331 VPMQRVLKYHLLLQELVKHTQEAM-EKENLRLALDAMRDLAQCVN 374

>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209

 Score = 50.8 bits (122), Expect = 7e-10
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 14  PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           P  R+ KYP LL  L +   D+HT +  + ++    +       
Sbjct: 148 PFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQ 191

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406

 Score = 50.2 bits (120), Expect = 1e-09
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 13  VPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           VP+QRV KY LLL  L K T D  T K+ L  A   ++   + +N
Sbjct: 159 VPMQRVLKYHLLLQELVKHTQD-ATEKENLRLALDAMRDLAQCVN 202

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 50.0 bits (119), Expect = 2e-09
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           +  P+QR+T+YPLL+  + + TP+ H     L  A    +     +N
Sbjct: 165 LLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVN 211

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368

 Score = 49.5 bits (118), Expect = 3e-09
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           I   +QR+TKYPLLL  + K T    +  + L  A+   +  L+++N
Sbjct: 162 IISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVN 208

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 49.2 bits (117), Expect = 4e-09
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           +  PVQ++ KYPL LA L K T   H     +  A H ++   + IN
Sbjct: 254 LLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLIN 300

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418

 Score = 49.1 bits (117), Expect = 4e-09
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           I   +QR+TKYPLLL  + K T    +  + L  A+   +  L+++N
Sbjct: 204 IISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVN 250

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402

 Score = 48.7 bits (116), Expect = 6e-09
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 12  TVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
             PVQ++ KYPL LA L K T   H+    +  A   ++   + IN
Sbjct: 178 LTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQIN 223

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 48.1 bits (114), Expect = 8e-09
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           I   +QR+TKYPLLL  + + T +    +  +  A    +  L H+N
Sbjct: 322 IPTEMQRLTKYPLLLQSIGQNTEEPTEREK-VELAAECCREILHHVN 367

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354

 Score = 47.6 bits (113), Expect = 1e-08
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 14  PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           PVQR+ KY LLL    K           L +A   +    +  N
Sbjct: 143 PVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCN 186

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score = 47.7 bits (113), Expect = 1e-08
 Identities = 10/45 (22%), Positives = 14/45 (31%)

Query: 14  PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
            VQR+ +Y +LL              D    A   I    +  N 
Sbjct: 169 VVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRAND 213

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377

 Score = 46.4 bits (110), Expect = 3e-08
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           I   +QR+TKYPLLL  + + T +    ++ +  A    +  L H+N
Sbjct: 169 IPTEMQRLTKYPLLLQSIGQNTEEPTE-REKVELAAECCREILHHVN 214

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354

 Score = 45.3 bits (107), Expect = 9e-08
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 13  VPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
            PV     Y  LL +L + + D    + L  +A   +      + 
Sbjct: 148 APVYHCLHYFELLKQLEEKSEDQEDKECLK-QAITALLNVQSGME 191

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385

 Score = 44.9 bits (106), Expect = 1e-07
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           I   +QR+TKYPLLL  + K T    T ++ + +A  + +  L  +N
Sbjct: 167 IPTQMQRLTKYPLLLDNIAKYTEW-PTEREKVKKAADHCRQILNFVN 212

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353

 Score = 41.1 bits (96), Expect = 3e-06
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 14  PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           PVQR+TKY LLL  + K +     G + L EA  +I   L+ +N
Sbjct: 147 PVQRITKYQLLLKEMLKYSKHCE-GAEDLQEALSSILGILKAVN 189

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311

 Score = 39.8 bits (93), Expect = 6e-06
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 14  PVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           PVQR+TKY LLL  L     +       + +    +    +  N
Sbjct: 142 PVQRITKYQLLLKELLTCCEEGK---GEIKDGLEVMLSVPKRAN 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	58
1by1_A	209	Protein (PIX); RHO-GTPase exchange factor, transpo	99.85
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.84
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	99.82
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.81
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	99.8
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	99.8
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	99.79
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.78
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.78
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	99.77
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	99.77
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	99.76
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	99.75
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	99.75
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	99.75
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.73
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	99.73
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	99.71
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	99.71
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	99.6
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	95.14
4gou_A	518	EHRGS-rhogef; RGS domain, DH domain, PH domain, RH	86.19

>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1

Probab=99.85  E-value=6.4e-22  Score=117.43  Aligned_cols=57  Identities=21%  Similarity=0.294  Sum_probs=54.5

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|||||+||+|||++++|+||++|||+..+++|++.+++++..||+
T Consensus       136 ~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~h~d~~~l~~Al~~i~~v~~~iNe  192 (209)
T 1by1_A          136 PGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQE  192 (209)
T ss_dssp             STTTHHHHHTTSTTTGGGTHHHHHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCHHHHhhHHHHHHhHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999999984

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.84  E-value=3.2e-21  Score=117.60  Aligned_cols=57  Identities=26%  Similarity=0.428  Sum_probs=54.9

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++++|.+||++|||||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus       211 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~iNe  267 (283)
T 3jv3_A          211 CKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNE  267 (283)
T ss_dssp             GTTCCHHHHTTHHHHHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHhhhhHHHhcchHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence            567999999999999999999999999999999999999999999999999999984

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=99.82  E-value=2.1e-20  Score=116.92  Aligned_cols=57  Identities=33%  Similarity=0.438  Sum_probs=51.9

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|||||+|||+||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus       144 ~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~iN~  200 (346)
T 2z0q_A          144 SRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINT  200 (346)
T ss_dssp             ----CTTTGGGHHHHHHHHHHHHHHHHHHTSCTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999999999999999984

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=99.81  E-value=2.6e-20  Score=117.10  Aligned_cols=57  Identities=30%  Similarity=0.377  Sum_probs=55.0

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++++|.+||++|+|||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus       153 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~  209 (368)
T 1xcg_A          153 CRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE  209 (368)
T ss_dssp             GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCChHHHhhhHhhhhhhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999983

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=99.80  E-value=4.4e-20  Score=116.31  Aligned_cols=57  Identities=25%  Similarity=0.222  Sum_probs=54.8

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|||||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus       131 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~in~  187 (354)
T 2rgn_B          131 GHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCND  187 (354)
T ss_dssp             CCSSCHHHHTTHHHHHHTSHHHHHHHHHHHTSSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHhhhHHHHHhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999999999999999983

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=99.80  E-value=3.5e-20  Score=117.04  Aligned_cols=57  Identities=30%  Similarity=0.364  Sum_probs=54.7

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|||||+||||||++|+|+|+++|+|+..+++|++.+++++..||.
T Consensus       148 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~~~~v~~~iNe  204 (377)
T 1foe_A          148 QHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINE  204 (377)
T ss_dssp             CGGGSHHHHTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcCHHHHhccchhhhccHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999983

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=99.79  E-value=1.1e-19  Score=116.04  Aligned_cols=57  Identities=28%  Similarity=0.387  Sum_probs=54.6

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +.+++|.+||++|||||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus       168 ~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d~~~L~~Al~~i~~v~~~iNe  224 (402)
T 2dfk_A          168 MIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINE  224 (402)
T ss_dssp             CCSCCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhHHHHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999983

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.78  E-value=2.1e-19  Score=115.98  Aligned_cols=57  Identities=30%  Similarity=0.355  Sum_probs=54.6

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +.+++|.+||++|||||+||+|||++|+|+|+++|+|+..+++|++.+++++..||.
T Consensus       245 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iNe  301 (466)
T 2pz1_A          245 MIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINE  301 (466)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHhhhHHHHhhhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999983

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=99.78  E-value=1.8e-19  Score=114.83  Aligned_cols=57  Identities=30%  Similarity=0.377  Sum_probs=54.9

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++++|.+||++|||||+||+|||++++|+|+++|+|+..+++|++.+++++..||.
T Consensus       195 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~v~~~iN~  251 (418)
T 3t06_A          195 CRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE  251 (418)
T ss_dssp             GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999983

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=99.77  E-value=5.1e-19  Score=111.42  Aligned_cols=56  Identities=38%  Similarity=0.446  Sum_probs=52.9

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|||||+||+|||++++|+|+ +|+|+..+++|++.+++++..||.
T Consensus       135 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~-~~~d~~~L~~Al~~i~~v~~~iN~  190 (353)
T 1kz7_A          135 DHKLSLDSYLLKPVQRITKYQLLLKEMLKYSK-HCEGAEDLQEALSSILGILKAVND  190 (353)
T ss_dssp             TCSSCHHHHHTHHHHHHHHHHHHHHHHHHTCT-TSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999998 589999999999999999999984

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=3.4e-19  Score=113.89  Aligned_cols=57  Identities=19%  Similarity=0.088  Sum_probs=51.8

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|||||+||+|||++|+|+|+++|+|+..+++|++.+++++..||.
T Consensus       157 ~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iN~  213 (434)
T 3mpx_A          157 GGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRAND  213 (434)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHhhhHHhhhHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999999999999999983

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=99.76  E-value=3.4e-19  Score=113.51  Aligned_cols=56  Identities=32%  Similarity=0.348  Sum_probs=53.5

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|||||+||+|||++|+|+| ++|+|+..+++|++.+++++..||+
T Consensus       148 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t-~~~~d~~~l~~Al~~i~~v~~~iNe  203 (406)
T 2vrw_B          148 NGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRLALDAMRDLAQCVNE  203 (406)
T ss_dssp             TTSCCHHHHTTHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHhhhHHHHHhhHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999 8999999999999999999999983

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=99.75  E-value=6.8e-19  Score=110.79  Aligned_cols=56  Identities=30%  Similarity=0.380  Sum_probs=53.3

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++++|.+||++||||++||++||++++|+|++ |+|+..+++|++.+++++..||+
T Consensus       160 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~-~~d~~~l~~A~~~i~~v~~~in~  215 (377)
T 3p6a_A          160 CRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQ  215 (377)
T ss_dssp             GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHhhhHHHHHHHHHhhCCC-cccHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999986 89999999999999999999983

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=99.75  E-value=7.2e-19  Score=111.29  Aligned_cols=56  Identities=30%  Similarity=0.382  Sum_probs=53.1

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++++|.+||++|||||+||+|||++|+|+|+++ +|+..+++|++.+++++..||.
T Consensus       158 ~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~-~d~~~l~~Al~~i~~v~~~iN~  213 (385)
T 1txd_A          158 CRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWP-TEREKVKKAADHCRQILNFVNQ  213 (385)
T ss_dssp             GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCChHHHhhhHHhHhhhHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999875 8999999999999999999984

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=99.75  E-value=3.2e-19  Score=111.80  Aligned_cols=54  Identities=17%  Similarity=0.152  Sum_probs=50.8

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN   57 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN   57 (58)
                      ++++|.+||++|||||+||||||++++|+|| +|+|+..+++|++.+++++..||
T Consensus       138 ~~~~L~~~Li~PvQRi~rY~LLL~~llk~t~-~~~d~~~L~~Al~~~~~v~~~in  191 (354)
T 1dbh_A          138 VQYVLPRLLLAPVYHCLHYFELLKQLEEKSE-DQEDKECLKQAITALLNVQSGME  191 (354)
T ss_dssp             HHHTHHHHTTHHHHHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHhchHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999999997 59999999999999999999876

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.73  E-value=1.8e-19  Score=116.39  Aligned_cols=57  Identities=25%  Similarity=0.394  Sum_probs=0.0

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++++|.+||++|+|||+||++||++++|+|+++|+|+..+++|++.+++++.+||+
T Consensus       156 ~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~in~  212 (510)
T 3jzy_A          156 CKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNE  212 (510)
T ss_dssp             ---------------------------------------------------------
T ss_pred             ccCCCHHHHhChhhhhhcCcHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999999999999999999999984

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=99.73  E-value=3.3e-18  Score=105.93  Aligned_cols=53  Identities=23%  Similarity=0.246  Sum_probs=49.2

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      .+++|.+||++|||||+||||||++++|+||++|+|   +++|++.+++++.++|.
T Consensus       131 ~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~h~~---l~~Al~~~~~v~~~~N~  183 (311)
T 1nty_A          131 LANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRAND  183 (311)
T ss_dssp             CSSCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTCTT---HHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCcHH---HHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999998876   78999999999999983

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=99.71  E-value=5.1e-18  Score=111.95  Aligned_cols=56  Identities=30%  Similarity=0.380  Sum_probs=53.3

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++++|.+||++|||||+||+|||++|+|+|++ |+|+..+++|+..+++++.+||.
T Consensus       313 ~~~l~L~s~Li~PvQRi~rY~LLL~~LlK~T~~-~~d~~~L~~Al~~i~~v~~~iNe  368 (536)
T 3odw_A          313 CRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQ  368 (536)
T ss_dssp             GTTCCHHHHTTHHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999976 89999999999999999999983

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=99.71  E-value=6.7e-18  Score=111.88  Aligned_cols=56  Identities=30%  Similarity=0.323  Sum_probs=53.2

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|||||+||+|||++++|+|+ +|+|+..+++|++.+++++..||+
T Consensus       320 ~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~T~-~~~d~~~L~~Al~~i~~v~~~iNe  375 (587)
T 3ky9_A          320 NGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVNE  375 (587)
T ss_dssp             SSSCCHHHHHHHHHHHHTTHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHhHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999997 699999999999999999999983

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=99.60  E-value=1.9e-16  Score=110.51  Aligned_cols=54  Identities=17%  Similarity=0.152  Sum_probs=51.0

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN   57 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN   57 (58)
                      ++++|.+||++|||||+||+|||++++|+|+ +|+|+..+++|++.+++++..||
T Consensus       335 ~~l~L~s~LikPvQRI~rY~LLL~~LlK~Tp-~~~D~~~L~~Al~~i~~v~~~VN  388 (1049)
T 3ksy_A          335 VQYVLPRLLLAPVYHCLHYFELLKQLEEKSE-DQEDKECLKQAITALLNVQSGME  388 (1049)
T ss_dssp             HHHTHHHHTTHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHhHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999996 56999999999999999999988

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=95.14  E-value=0.0001  Score=43.10  Aligned_cols=28  Identities=14%  Similarity=0.213  Sum_probs=26.4

Q ss_pred             hCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540          31 VTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus        31 ~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      ||+++|+|+.++++|++.+++++.+||+
T Consensus         2 ~T~~~~~e~~~L~~Al~~ik~i~~~VNe   29 (185)
T 2lg1_A            2 MTKDNEVEQEDLAQSLSLVKDVIGAVDS   29 (185)
T ss_dssp             CSSTTTSCCTTSCCSSSSSTTTSGGGGG
T ss_pred             CCCCCcHhHHHHHHHHHHHHHHHHHHhH
Confidence            7899999999999999999999999994

>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}

Probab=86.19  E-value=1.5  Score=28.05  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=38.0

Q ss_pred             CCccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHH
Q psy2540           1 MVSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQH   47 (58)
Q Consensus         1 ~~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~   47 (58)
                      |.++++.-..|+.|--|+-.|+--..+.+|-|..++.+-..++-...
T Consensus       315 mtkkmsvlqmlvypyfrvrtyqayvddfikitkkdsqevkelevvhs  361 (518)
T 4gou_A          315 MTKKMSVLQMLVYPYFRVRTYQAYVDDFIKITKKDSQEVKELEVVHS  361 (518)
T ss_dssp             HHTSCCHHHHHHGGGGHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhheehhHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            44677778889999999999999999999999888876665554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	58
d1by1a_	209	a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI	2e-08
d1foea1	206	a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in	7e-07
d2dfka1	203	a.87.1.1 (A:37-239) Rho guanine nucleotide exchang	8e-07
d1xcga1	228	a.87.1.1 (A:714-941) Rho guanine nucleotide exchan	8e-07
d1kz7a1	195	a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse	1e-06
d1ki1b1	210	a.87.1.1 (B:1229-1438) GEF of intersectin {Human (	2e-06
d1dbha1	207	a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H	1e-05
d1txda1	234	a.87.1.1 (A:766-999) Rho guanine nucleotide exchan	1e-05
d1ntya1	184	a.87.1.1 (A:1231-1414) Triple functional domain pr	2e-05
d1f5xa_	208	a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta	2e-05

>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: beta-pix
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 2e-08
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           ++ P  R+ KYP LL  L +   D+HT +  + ++    +       
Sbjct: 145 LSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQ 191

>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (96), Expect = 7e-07
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           +  P+QRV KYPLLL  L+ +T         L  A   +     HIN
Sbjct: 153 LIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHIN 199

>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.3 bits (96), Expect = 8e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           +  PVQ++ KYPL LA L K T   H+    +  A   ++   + IN
Sbjct: 150 LLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQIN 196

>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 8e-07
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
           I   +QR+TKYPLLL  + K T    +  + L  A+   +  L+++N 
Sbjct: 162 IISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE 209

>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (95), Expect = 1e-06
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           +  PVQR+TKY LLL  + K +     G + L EA  +I   L+ +N
Sbjct: 142 LLKPVQRITKYQLLLKEMLKYSKHCE-GAEDLQEALSSILGILKAVN 187

>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           I  P+QRVT+YPL++  + + TP++H     L  A    +     +N
Sbjct: 147 ILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVN 193

>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
           +  PV     Y  LL +L + + D    K+ L +A   +      +  
Sbjct: 146 LLAPVYHCLHYFELLKQLEEKSEDQE-DKECLKQAITALLNVQSGMEK 192

>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 1e-05
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS 58
           I   +QR+TKYPLLL  + K T    T ++ + +A  + +  L  +N 
Sbjct: 165 IPTQMQRLTKYPLLLDNIAKYTEW-PTEREKVKKAADHCRQILNFVNQ 211

>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 2e-05
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           +  PVQR+TKY LLL  L     +       + +    +    +  N
Sbjct: 133 LIKPVQRITKYQLLLKELLTCCEEGK---GEIKDGLEVMLSVPKRAN 176

>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: RhoGEF Vav
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 2e-05
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 11  ITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHIN 57
           + VP+QRV KY LLL  L K T D    ++ L  A   ++   + +N
Sbjct: 159 LMVPMQRVLKYHLLLQELVKHTQDATEKEN-LRLALDAMRDLAQCVN 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	58
d1by1a_	209	beta-pix {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1foea1	206	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	99.78
d2dfka1	203	Rho guanine nucleotide exchange factor 9, Collybis	99.78
d1ki1b1	210	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	99.77
d1kz7a1	195	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	99.77
d1f5xa_	208	RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]}	99.77
d1xcga1	228	Rho guanine nucleotide exchange factor 11, PDZ-Rho	99.75
d1ntya1	184	Triple functional domain protein TRIO {Human (Homo	99.74
d1dbha1	207	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	99.73
d1txda1	234	Rho guanine nucleotide exchange factor 12 {Human (	99.69

>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: beta-pix
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.7e-20  Score=107.71  Aligned_cols=57  Identities=21%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      .++++|.+||++|+||++||++||++++|+|+++|+|+..+..|++.+++++..||+
T Consensus       136 ~~~~~l~~~L~~PvQRl~rY~LLL~~Llk~t~~~~~d~~~L~~a~~~~~~i~~~iNe  192 (209)
T d1by1a_         136 PGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQE  192 (209)
T ss_dssp             STTTHHHHHTTSTTTGGGTHHHHHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHhhhHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999984

>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.1e-19  Score=105.21  Aligned_cols=57  Identities=30%  Similarity=0.364  Sum_probs=54.5

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      .++++|.+||++|+||++||++||++++++||++|+|+..+..|+..+++++..||+
T Consensus       144 ~~~~~l~~~L~~PvqRi~rY~llL~~l~k~t~~~~~d~~~L~~a~~~i~~~~~~iNe  200 (206)
T d1foea1         144 QHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINE  200 (206)
T ss_dssp             CGGGSHHHHTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999999984

>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.7e-19  Score=104.54  Aligned_cols=57  Identities=28%  Similarity=0.387  Sum_probs=54.4

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      ++++++.+||++|+||++||++||++++++||++|+|+..++.|+..+++++..||+
T Consensus       141 ~~~~~l~~~L~~PvqRi~rY~llL~~llk~t~~~~~d~~~L~~a~~~i~~~~~~iNe  197 (203)
T d2dfka1         141 MIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINE  197 (203)
T ss_dssp             CCSCCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999999984

>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-19  Score=104.71  Aligned_cols=57  Identities=26%  Similarity=0.428  Sum_probs=54.6

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|+||++||+++|++++|+||++|+|+..+..|+..+++++..||.
T Consensus       138 ~~~~~l~~~L~~PvqRl~rY~llL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~  194 (210)
T d1ki1b1         138 CKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNE  194 (210)
T ss_dssp             GTTCCHHHHTTHHHHHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHhHHhHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999983

>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.2e-19  Score=104.03  Aligned_cols=55  Identities=38%  Similarity=0.472  Sum_probs=52.1

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      ++++|.+||++||||++||++||++++|+|| +|+|+..+++|++.+++++..||.
T Consensus       134 ~~~~l~s~L~~PvqRl~rY~LlL~~llk~Tp-~~~d~~~L~~al~~~~~~~~~iNe  188 (195)
T d1kz7a1         134 HKLSLDSYLLKPVQRITKYQLLLKEMLKYSK-HCEGAEDLQEALSSILGILKAVND  188 (195)
T ss_dssp             CSSCHHHHHTHHHHHHHHHHHHHHHHHHTCT-TSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999996 689999999999999999999984

>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: RhoGEF Vav
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.3e-19  Score=104.21  Aligned_cols=56  Identities=32%  Similarity=0.341  Sum_probs=53.5

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|+||++||++||++++|+|| +|+|+..++.|++.+++++..||+
T Consensus       150 ~~~~~l~~~L~~PvqRl~rY~lLl~~llk~T~-~~~d~~~L~~a~~~~~~~~~~iNe  205 (208)
T d1f5xa_         150 NGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-DATEKENLRLALDAMRDLAQCVNE  205 (208)
T ss_dssp             TTSSTTTTTTTTHHHHHHHHHHHHHHHHTTCC-CSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccHHHHHHHHHHHHHHHHHhhh
Confidence            57899999999999999999999999999997 699999999999999999999995

>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5e-19  Score=103.75  Aligned_cols=57  Identities=30%  Similarity=0.377  Sum_probs=54.7

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      |++++|.+||++|+||++||+++|++++++||++|||+..+..|+..+++++..||+
T Consensus       153 ~~~~~l~~~l~~P~qRl~rY~llL~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~  209 (228)
T d1xcga1         153 CRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE  209 (228)
T ss_dssp             GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhhHHHHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999983

>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.6e-19  Score=100.56  Aligned_cols=53  Identities=23%  Similarity=0.246  Sum_probs=48.6

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      .+++|.+||++|+||++||++||++++|+|+++|+|   +++|++.+++++..||+
T Consensus       125 ~~~~l~~~Li~PvQRl~rY~lLL~~llk~T~~~~~d---l~~al~~i~~v~~~ine  177 (184)
T d1ntya1         125 LANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRAND  177 (184)
T ss_dssp             CSSCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTCTT---HHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999998   56799999999999984

>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.4e-19  Score=103.79  Aligned_cols=55  Identities=16%  Similarity=0.163  Sum_probs=49.7

Q ss_pred             ccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           3 SKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         3 ~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      ++++|.+||++|+||++||++||++|.+. +++|+|+..++.|++.+++++.+||+
T Consensus       138 ~~~~L~s~Li~PvQRl~rY~LLl~~L~~~-t~~~~D~~~L~~A~~~i~~~~~~in~  192 (207)
T d1dbha1         138 VQYVLPRLLLAPVYHCLHYFELLKQLEEK-SEDQEDKECLKQAITALLNVQSGMEK  192 (207)
T ss_dssp             HHHTHHHHTTHHHHHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHhHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999987654 46899999999999999999999984

>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=99.69  E-value=1e-17  Score=98.50  Aligned_cols=56  Identities=30%  Similarity=0.408  Sum_probs=52.8

Q ss_pred             CccCCcchhhhhhhhhhhchHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy2540           2 VSKLFAQVSITVPVQRVTKYPLLLARLYKVTPDHHTGKDLLIEAQHNIQLHLEHINS   58 (58)
Q Consensus         2 ~~~l~L~~~L~~P~QRi~rY~LLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN~   58 (58)
                      +++++|.+||++|+||++||+++|++++|+|+ +|+|+..+..|+..+++++..||.
T Consensus       156 ~~~~~l~~~L~~PvqRl~kY~llL~~llk~t~-~~~d~~~l~~al~~~~~~~~~vn~  211 (234)
T d1txda1         156 CRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTE-WPTEREKVKKAADHCRQILNFVNQ  211 (234)
T ss_dssp             GTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999995 799999999999999999999983