Psyllid ID: psy2587

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MNSSGGYFGPYQDIRMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTRGAEKQPCKYDKSSWSECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSDANCEKSRTLTKKCKAKNSGRKNKANNDCLTDLGLGLSDGRTCVVYKARHLGLSGSLIDRHTRSNGRPTRSSERDWPT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccccccccccccccccccEEEEEEccccccccccccccHHHccccccccccccccccccccEEEEcccccccccccccccEEEEcccccccccccccccccccccccccccccccEEEEEHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccEEEEEccccccccccEEEccccccccccccccEEEEEEcccccccccccEEEEEccccccEEcccccccccccccEEEEEccccccccccccccEEEEEEccccccccccccccccccccccccccccEEEEEEEHHccccccHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mnssggyfgpyqdirmWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRntrgaekqpckydksswsecdpnthmknrtltlkkgspttceATKSISRKCKKACryekgswsqcsvagdmtRTDMLKeansdanceksRTLTkkckaknsgrknkanndcltdlglglsdgrTCVVYKARHlglsgslidrhtrsngrptrsserdwpt
Flexible Loop (DISEMBL)
MNSSGGYFGPYQDIRMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRntrgaekqpckydksswsecdpnthmknrtltlkkgspttceatksisrkckkacryekgswsqcsvagdMTRTDMLKEansdanceksrtltkkckaknsgrknkanndcLTDLGLGLSDGRTCVVYKARhlglsgslidrhtrsngrptrsserdwpt
Low Complexity Region (SEG)
MNSSGGYFGPYQDIRMWGVFGTVLVLCLVSIInanhaenweenaheVLIRNTRGAEKQPCKYDKSSWSECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSDANCEKSRTLTKKCKAKNSGRKNKANNDCLTDLGLGLSDGRTCVVYKARHLGLSGSLIDRHTRSNGRPTRSSERDWPT
Disordered region (IsUnstruct)
*****GYFGPYQDIRMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRN**************************************************KKACRYEKGSWSQC********************************************DCLTDLGLGLSDGRTCVVYKARHLGLSGSLI********************
Disordered Region (DISOPRED)
*****GY*GPYQDIRMWGVFGTVLVLCLVS******************************KYDKSSWSECDPNTH***********************RKCKKACRYEKGSWSQCSVAGD*******************************************DLGLGLSDGRTCVVYKARHLGLSGSLI********************
Disordered Region (DISEMBL)
MNSSGGYFGPYQDIRMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTR***************ECDPNTHMKNRTLTLKK***************************SQCSVAGDMTRTDMLKEANSDANCEKSRTLTKKCKAKNSGRKNKANNDCLTDLGLGLSDGRTCVVYKARHLGLSGSLIDRH*****************
Disordered Region (DISPRO)
*****GYFGPYQDIRMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTRGAEKQPCKYDKSSWSECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSDANCEKSRTLTKKCKAK********NNDCLTDLGLGLSDGRTCVVYKARHLGLSG***********************
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSSGGYFGPYQDIRMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTRGAEKQPCKYDKSSWSECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSDANCEKSRTLTKKCKAKNSGRKNKANNDCLTDLGLGLSDGRTCVVYKARHLGLSGSLIDRHTRSNGRPTRSSERDWPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
332375014	150	unknown [Dendroctonus ponderosae]	0.604	0.846	0.555	8e-34
389611191	152	conserved hypothetical protein [Papilio	0.657	0.907	0.506	9e-33
270004078	190	hypothetical protein TcasGA2_TC003391 [T	0.638	0.705	0.554	1e-32
91078696	146	PREDICTED: similar to Pleiotrophin-like	0.6	0.863	0.560	2e-32
389611666	152	conserved hypothetical protein [Papilio	0.647	0.894	0.527	8e-32
169234710	162	pleiotrophin-like protein precursor [Bom	0.628	0.814	0.503	2e-31
383864400	160	PREDICTED: uncharacterized protein LOC10	0.666	0.875	0.469	5e-28
357607508	138	pleiotrophin-like protein [Danaus plexip	0.614	0.934	0.503	2e-27
307213399	160	hypothetical protein EAI_08420 [Harpegna	0.638	0.837	0.5	3e-27
195125428	185	GI12795 [Drosophila mojavensis] gi|19391	0.566	0.643	0.548	7e-27

>gi|332375014|gb|AEE62648.1| unknown [Dendroctonus ponderosae]

 Score =  149 bits (376), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 100/135 (74%), Gaps = 8/135 (5%)

Query: 17  WGVFGTV--LVLCLVSIINANHAENWEENAHEVLIRNTRGAEKQPCKYDKSSWSECDPNT 74
           W VF TV  LV C+V+       E WEE+ HEVLIR+ RGA+ Q C+Y K  WSECD  T
Sbjct: 3   WLVFFTVTILVACVVA-----EGEVWEEDDHEVLIRSERGAKNQECRYAKGGWSECDSKT 57

Query: 75  HMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSDA 134
           + ++RTLTLKKG+ T+CE TK++ +KCKKACRYEKG+W++C+  G +TR+D LK+  SD 
Sbjct: 58  NQRSRTLTLKKGNQTSCEPTKTMQKKCKKACRYEKGNWAECNAQGQITRSDKLKQG-SDP 116

Query: 135 NCEKSRTLTKKCKAK 149
           +CE+ R +TKKCK+K
Sbjct: 117 SCEQKREITKKCKSK 131

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611191|dbj|BAM19207.1| conserved hypothetical protein [Papilio polytes]

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 107/150 (71%), Gaps = 12/150 (8%)

Query: 15  RMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTRGAE-KQPCKYDKSSWSECDPN 73
           R W V G +L+L  ++   A   E +E++ HE+L+RN RGA+ ++ C+Y + +WSECD  
Sbjct: 6   RGWMVAGLILLLVAIA---AAEGEVFEKDDHELLVRNERGAKSRETCRYVRGAWSECDSK 62

Query: 74  THMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSD 133
           T++++RTLTLKKG  + CE TK+I +KCKKACRYEK SWS+CS  G+M+RTDMLK ANSD
Sbjct: 63  TNIRSRTLTLKKGDVSNCERTKTIQKKCKKACRYEKSSWSECSPNGEMSRTDMLK-ANSD 121

Query: 134 ANCEKSRTLTKKC-------KAKNSGRKNK 156
             C++SR +TKKC         K+ GR+N+
Sbjct: 122 PTCDQSRRITKKCNKNKQVKSTKDKGRRNR 151

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004078|gb|EFA00526.1| hypothetical protein TcasGA2_TC003391 [Tribolium castaneum]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 103/137 (75%), Gaps = 3/137 (2%)

Query: 15  RMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTRGAE-KQPCKYDKSSWSECDPN 73
           RM  +   VL + L+++  A+  E WEE+ HEVLIR+ RGA+ ++ C+Y K +WSECD  
Sbjct: 44  RMKWLALCVLAVVLITLAVAD-GEIWEEDDHEVLIRSERGAKNREECRYGKGAWSECDLK 102

Query: 74  THMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSD 133
           T+M++RTLTLKKG+ TTCE+TK+I +KCKKACRYEKG+W  C+    MTR D LK  NSD
Sbjct: 103 TNMRSRTLTLKKGNQTTCESTKTIQKKCKKACRYEKGTWGDCNAQSLMTRNDKLK-PNSD 161

Query: 134 ANCEKSRTLTKKCKAKN 150
           A+CE++R +TKKCK K+
Sbjct: 162 ASCEQNRQITKKCKPKS 178

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078696|ref|XP_971390.1| PREDICTED: similar to Pleiotrophin-like protein [Tribolium castaneum]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 100/132 (75%), Gaps = 6/132 (4%)

Query: 24  LVLCLVSIINANHA----ENWEENAHEVLIRNTRGAE-KQPCKYDKSSWSECDPNTHMKN 78
           L LC+++++    A    E WEE+ HEVLIR+ RGA+ ++ C+Y K +WSECD  T+M++
Sbjct: 4   LALCVLAVVLITLAVADGEIWEEDDHEVLIRSERGAKNREECRYGKGAWSECDLKTNMRS 63

Query: 79  RTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSDANCEK 138
           RTLTLKKG+ TTCE+TK+I +KCKKACRYEKG+W  C+    MTR D LK  NSDA+CE+
Sbjct: 64  RTLTLKKGNQTTCESTKTIQKKCKKACRYEKGTWGDCNAQSLMTRNDKLK-PNSDASCEQ 122

Query: 139 SRTLTKKCKAKN 150
           +R +TKKCK K+
Sbjct: 123 NRQITKKCKPKS 134

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611666|dbj|BAM19417.1| conserved hypothetical protein [Papilio xuthus]

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 105/148 (70%), Gaps = 12/148 (8%)

Query: 17  WGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTRGAE-KQPCKYDKSSWSECDPNTH 75
           W V G  L+L LV+I +A   E  E+  HE L+RN RGA+ ++ C+Y + +WSECD  T+
Sbjct: 8   WMVAG--LILLLVAIASA-EGEVLEKGDHEALVRNERGAKSRETCRYVRGAWSECDSKTN 64

Query: 76  MKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSDAN 135
           +++RTLTLKKG  + CE TK+I +KCKKACRYEK SWS+CS  G+M+RTDMLK ANSD  
Sbjct: 65  IRSRTLTLKKGDVSNCERTKTIQKKCKKACRYEKSSWSECSPNGEMSRTDMLK-ANSDPT 123

Query: 136 CEKSRTLTKKC-------KAKNSGRKNK 156
           C++SR +TKKC         K+ GR+N+
Sbjct: 124 CDQSRRITKKCNKNKQVKSTKDKGRRNR 151

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169234710|ref|NP_001108476.1| pleiotrophin-like protein precursor [Bombyx mori] gi|18700463|dbj|BAB85199.1| Pleiotrophin-like protein [Bombyx mori] gi|22474517|dbj|BAC10621.1| Pleiotrophin-like protein [Bombyx mori]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 98/135 (72%), Gaps = 3/135 (2%)

Query: 13  DIRMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTRGAE-KQPCKYDKSSWSECD 71
           +++ W      L L  V+++ A+  E WEEN HEVLIR+ RGA+ ++ C+Y + +WSECD
Sbjct: 2   ELKYWWWMMAGLALLSVAVVAAD-GEVWEENDHEVLIRSARGAKNREACRYVRGAWSECD 60

Query: 72  PNTHMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEAN 131
             T++++R LTLKKG P  CE  K+I +KCK+ CRYEK SWS+CS+ G+M+RTD LK +N
Sbjct: 61  SKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLK-SN 119

Query: 132 SDANCEKSRTLTKKC 146
           SD+ C++SR  T+KC
Sbjct: 120 SDSTCDQSRRKTRKC 134

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864400|ref|XP_003707667.1| PREDICTED: uncharacterized protein LOC100877636 [Megachile rotundata]

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 98/149 (65%), Gaps = 9/149 (6%)

Query: 14  IRMWGVFGTVLVLCLVSIINAN-HAENWEENAHEVLIRNTRGAEKQP------CKYDKSS 66
           +++W     V +  L  ++ A   ++ WEE+  EVL+R  RG +++       C+Y K  
Sbjct: 1   MKLWWSLALVGIALLTIVVTARAESDLWEEDDTEVLVRTVRGTKERASGSTSSCRYVKGQ 60

Query: 67  WSECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDM 126
           WSECD  T+ ++RTL LKKG   +CE TK+I +KCKKACRYEKG+WS C V   MTR D 
Sbjct: 61  WSECDSKTNTRSRTLNLKKGDSRSCEQTKTIQKKCKKACRYEKGTWSGC-VNQQMTREDH 119

Query: 127 LKEANSDANCEKSRTLTKKCKAKNSGRKN 155
           LK ANSDA+CEK+R LTK+CK + + +K+
Sbjct: 120 LK-ANSDASCEKTRRLTKRCKPETNTKKS 147

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357607508|gb|EHJ65547.1| pleiotrophin-like protein [Danaus plexippus]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 97/141 (68%), Gaps = 12/141 (8%)

Query: 24  LVLCLVSIINANHAENWEENAHEVLIRNTRGAE-KQPCKYDKSSWSECDPNTHMKNRTLT 82
           +V  +V  ++ + AE    + HE L+R  RGA+ K+ C+Y + +WSECDP T++++RTLT
Sbjct: 1   MVALVVVSVSMSLAE--PRSDHE-LVRTERGAKNKETCRYVRGTWSECDPKTNVRSRTLT 57

Query: 83  LKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSDANCEKSRTL 142
           LKKG P  CE  K+I +KCKKACRYEK SWS+CS  G+M+RTDMLK  NSD  C+ SR +
Sbjct: 58  LKKGDPVNCERAKTIQKKCKKACRYEKSSWSECSPNGEMSRTDMLKN-NSDPTCDTSRRV 116

Query: 143 TKKC-------KAKNSGRKNK 156
           TKKC         K+ GR+N+
Sbjct: 117 TKKCNKNKQLKSTKDKGRRNR 137

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213399|gb|EFN88835.1| hypothetical protein EAI_08420 [Harpegnathos saltator]

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 96/148 (64%), Gaps = 14/148 (9%)

Query: 17  WGVFGTVLVLCLVSIINANHAEN---WEENAHEVLIRNTRGAEKQP------CKYDKSSW 67
           W +    + L +  I+    AEN   WEE+  EVL+R  RG  ++       C+Y K  W
Sbjct: 5   WSLLLAAIALSM--ILTTARAENDGLWEEDDKEVLVRTVRGTNERTSSSSSSCRYVKGQW 62

Query: 68  SECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDML 127
           SECDPNT+ ++RTL+LKKG  + CE TK I +KCKKACRYEKG+WS C V   MTR D L
Sbjct: 63  SECDPNTNTRSRTLSLKKGDKS-CEQTKIIQKKCKKACRYEKGTWSGC-VNQMMTRIDNL 120

Query: 128 KEANSDANCEKSRTLTKKCKAKNSGRKN 155
           K ANSDA CEK+R LTK+CK + + +K+
Sbjct: 121 K-ANSDATCEKTRRLTKRCKQETNTKKS 147

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195125428|ref|XP_002007180.1| GI12795 [Drosophila mojavensis] gi|193918789|gb|EDW17656.1| GI12795 [Drosophila mojavensis]

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/124 (54%), Positives = 85/124 (68%), Gaps = 5/124 (4%)

Query: 34  ANHAENWEENAHEVLIRNTRGAEKQ--PCKYDKSSWSECDPNTHMKNRTLTLKKGSPTTC 91
           A   E WEE+ HEVLIRN RG +     C+Y K+ W+ECD  T+ ++RTLTLKKG P  C
Sbjct: 48  ATQGEIWEEDDHEVLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLKKGDPA-C 106

Query: 92  EATKSISRKCKKACRYEKGSWSQCSVAGDMTRTDMLKEANSDANCEKSRTLTKKCKAKNS 151
           + T++I +KCKKACRYEKGSWS+C V G MTR D LK A SD +CE +R + K CK   S
Sbjct: 107 DQTRTIQKKCKKACRYEKGSWSEC-VTGQMTRADKLK-ATSDPSCESTRIIKKNCKPGKS 164

Query: 152 GRKN 155
             K+
Sbjct: 165 KDKS 168

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
FB|FBgn0027111	185	miple "miple" [Drosophila mela	0.528	0.6	0.516	2.4e-28
FB|FBgn0029002	279	miple2 "miple2" [Drosophila me	0.442	0.333	0.53	7.8e-23
UNIPROTKB|P48530	142	mdk-a "Midkine-A" [Xenopus lae	0.409	0.605	0.323	7.5e-07
UNIPROTKB|Q6P8F3	142	mdk "Midkine" [Xenopus (Silura	0.409	0.605	0.323	7.5e-07
UNIPROTKB|C9JR52	166	PTN "Pleiotrophin" [Homo sapie	0.266	0.337	0.428	1.5e-06
UNIPROTKB|A9DAB9	142	MDK "Midkine" [Gallus gallus (	0.433	0.640	0.317	2.2e-06
UNIPROTKB|P24052	142	RIHB "Midkine" [Gallus gallus	0.433	0.640	0.317	2.2e-06
UNIPROTKB|F1P1H3	130	PTN "Pleiotrophin" [Gallus gal	0.223	0.361	0.450	1.2e-05
UNIPROTKB|P32760	136	PTN "Pleiotrophin" [Gallus gal	0.223	0.345	0.450	1.2e-05
UNIPROTKB|I3L8L5	139	I3L8L5 "Uncharacterized protei	0.490	0.741	0.263	2e-05

FB|FBgn0027111 miple "miple" [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 62/120 (51%), Positives = 84/120 (70%)

Query:    47 VLIRNTRGAEKQ--PCKYDKSSWSECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCKKA 104
             VLIRN RG +     C+Y K+ W+ECD  T+ ++RTLTLKKG P  C+ T++I +KCKKA
Sbjct:    61 VLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLKKGDPA-CDQTRTIQKKCKKA 119

Query:   105 CRYEKGSWSQCSVAGDMTRTDMLKEANSDANCEKSRTLTKKCK---AKN-SGRKNKANND 160
             CRYEKGSWS+C+  G MTR D LK A+SD +CE +R + K CK   +K+ S ++ + N D
Sbjct:   120 CRYEKGSWSECAT-GQMTRADKLK-ASSDPSCEATRVIKKNCKPGKSKDKSAKEQRKNKD 177

GO:0008150 "biological_process" evidence=ND

GO:0008083 "growth factor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0008201 "heparin binding" evidence=ISS;IDA

FB|FBgn0029002 miple2 "miple2" [Drosophila melanogaster (taxid:7227)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 53/100 (53%), Positives = 69/100 (69%)

Query:    60 CKYDKSSWSECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCKKACRYEKGSWSQCSVAG 119
             C+Y KS+WS CD  T+M++R L+L+KG    C  T++I +KC+K CRYEKG WSQC V G
Sbjct:   159 CRYAKSAWSNCDHKTNMRSRVLSLRKGEQN-CLPTRTIQKKCEKGCRYEKGEWSQC-VGG 216

Query:   120 DMTRTDMLK-EAN--SDANCEKSRTLTKKCKAK--NSGRK 154
              +TR D L+ EA   SD NC   RT++KKCKA   +SG K
Sbjct:   217 QITREDKLEPEATGGSDQNCNPVRTVSKKCKANGNSSGGK 256

GO:0008150 "biological_process" evidence=ND

GO:0008083 "growth factor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0008201 "heparin binding" evidence=ISS

UNIPROTKB|P48530 mdk-a "Midkine-A" [Xenopus laevis (taxid:8355)]

 Score = 114 (45.2 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 34/105 (32%), Positives = 56/105 (53%)

Query:    66 SWSECDPNTHMKNRTLTLKKGSPTTC-EATKSISRK--C--KKA----CRYEKGSWSQCS 116
             +W  C PN+  K+     ++G   TC E T+ +  K  C  KKA    C+Y+  +W +C+
Sbjct:    40 TWGSCIPNS--KDCGAGTREG---TCKEETRKLKCKIPCNWKKAFGADCKYKFENWGECN 94

Query:   117 VA-GDMTRTDMLKEANSDANCEKSRTLTKKC----KAKNSGRKNK 156
                G   R+  LK+A  +A+C+++   TK C    K+K+ G+K K
Sbjct:    95 ATTGQKVRSGTLKKALYNADCQQTVEATKPCSLKTKSKSKGKKGK 139

GO:0007399 "nervous system development" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0008201 "heparin binding" evidence=ISS

GO:0009617 "response to bacterium" evidence=IMP

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IDA

UNIPROTKB|Q6P8F3 mdk "Midkine" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 114 (45.2 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 34/105 (32%), Positives = 56/105 (53%)

Query:    66 SWSECDPNTHMKNRTLTLKKGSPTTC-EATKSISRK--C--KKA----CRYEKGSWSQCS 116
             +W  C PN+  K+     ++G   TC E T+ +  K  C  KKA    C+Y+  +W +C+
Sbjct:    40 TWGRCIPNS--KDCGAGTREG---TCKEETRKLKCKIPCNWKKAFGADCKYKFENWGECN 94

Query:   117 VA-GDMTRTDMLKEANSDANCEKSRTLTKKC----KAKNSGRKNK 156
                G   R+  LK+A  +A+C+++   TK C    K+K+ G+K K
Sbjct:    95 ATTGQKVRSGTLKKALYNADCQQTVEATKPCSLKTKSKSKGKKGK 139

GO:0007399 "nervous system development" evidence=ISS

GO:0007528 "neuromuscular junction development" evidence=ISS

GO:0008201 "heparin binding" evidence=ISS

GO:0009617 "response to bacterium" evidence=ISS

GO:0043395 "heparan sulfate proteoglycan binding" evidence=ISS

UNIPROTKB|C9JR52 PTN "Pleiotrophin" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 27/63 (42%), Positives = 35/63 (55%)

Query:    54 GAEKQPCKYDKSSWSECDPNTHMKNRTLTLKKGSPTT-CEATKSISRKCKKACR---YEK 109
             GAE   CKY   +W ECD NT +K RT +LK+      C+ T +IS+ C K  +    EK
Sbjct:    96 GAE---CKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPCGKLTKPKPQEK 152

Query:   110 GSW 112
             G W
Sbjct:   153 GKW 155

GO:0008083 "growth factor activity" evidence=IEA

UNIPROTKB|A9DAB9 MDK "Midkine" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 33/104 (31%), Positives = 50/104 (48%)

Query:    67 WSECDPNTHMKNRTLTLKKGS------PTTCEATKSISRKCKKACRYEKGSWSQCSV-AG 119
             W  C PN+  K+  L  ++GS         C+   +  +K    C+Y+  SW  CS   G
Sbjct:    41 WGPCIPNS--KDCGLGYREGSCGDESRKLKCKIPCNWKKKFGADCKYKFESWGGCSAQTG 98

Query:   120 DMTRTDMLKEANSDANCEK----SRTLTKKCKAKNSGRKNKANN 159
               TR+ +LK+A  +A CE+    S+  T K KAK   +K K  +
Sbjct:    99 VKTRSGILKKALYNAECEEVVYVSKPCTAKMKAKAKAKKGKGKD 142

GO:0008083 "growth factor activity" evidence=IEA

GO:0001662 "behavioral fear response" evidence=IEA

GO:0007614 "short-term memory" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEA

GO:0021542 "dentate gyrus development" evidence=IEA

GO:0021681 "cerebellar granular layer development" evidence=IEA

GO:0021987 "cerebral cortex development" evidence=IEA

GO:0030421 "defecation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0050795 "regulation of behavior" evidence=IEA

UNIPROTKB|P24052 RIHB "Midkine" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 33/104 (31%), Positives = 50/104 (48%)

Query:    67 WSECDPNTHMKNRTLTLKKGS------PTTCEATKSISRKCKKACRYEKGSWSQCSV-AG 119
             W  C PN+  K+  L  ++GS         C+   +  +K    C+Y+  SW  CS   G
Sbjct:    41 WGPCIPNS--KDCGLGYREGSCGDESRKLKCKIPCNWKKKFGADCKYKFESWGGCSAKTG 98

Query:   120 DMTRTDMLKEANSDANCEK----SRTLTKKCKAKNSGRKNKANN 159
               TR+ +LK+A  +A CE+    S+  T K KAK   +K K  +
Sbjct:    99 VKTRSGILKKALYNAECEEVVYVSKPCTAKMKAKAKAKKGKGKD 142

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

UNIPROTKB|F1P1H3 PTN "Pleiotrophin" [Gallus gallus (taxid:9031)]

 Score = 104 (41.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)

Query:    54 GAEKQPCKYDKSSWSECDPNTHMKNRTLTLKKGSPTT-CEATKSISRKCKK 103
             GAE   CKY   +W ECD NT +K RT  LK+      C+ T +IS+ C K
Sbjct:    59 GAE---CKYQFQAWGECDLNTALKTRTGNLKRALHNADCQKTVTISKPCGK 106

GO:0008083 "growth factor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0030282 "bone mineralization" evidence=IEA

UNIPROTKB|P32760 PTN "Pleiotrophin" [Gallus gallus (taxid:9031)]

 Score = 104 (41.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)

Query:    54 GAEKQPCKYDKSSWSECDPNTHMKNRTLTLKKGSPTT-CEATKSISRKCKK 103
             GAE   CKY   +W ECD NT +K RT  LK+      C+ T +IS+ C K
Sbjct:    64 GAE---CKYQFQAWGECDLNTALKTRTGNLKRALHNADCQKTVTISKPCGK 111

GO:0008083 "growth factor activity" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|I3L8L5 I3L8L5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 102 (41.0 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 30/114 (26%), Positives = 53/114 (46%)

Query:    53 RGAEKQPCKYDKSSWSECDPNTHMKNRTLTLKKGSP--TTCEATKSISRKCKKACRYEKG 110
             RG+    C   + +W  C P++  KN ++   +G      C+   +  ++ +  C+Y+  
Sbjct:    30 RGSLGSECA--ERTWGPCTPSS--KNCSMGFLEGQMQHVLCQVPSNWKKEFEADCKYKFE 85

Query:   111 SWSQCSVA-GDMTRTDMLKEANSDANCEKSRTLTK----KCKAKNSGRKNKANN 159
             SW  C    G   R   LK+A  +A C+++  +TK    K KAK   +K K  +
Sbjct:    86 SWEACDGGTGTKARQGTLKKAWYNAQCQQTIHVTKPHTPKTKAKAKTKKGKGED 139

GO:0008083 "growth factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	210
pfam01091	63	pfam01091, PTN_MK_C, PTN/MK heparin-binding protei	1e-12
pfam01091	63	pfam01091, PTN_MK_C, PTN/MK heparin-binding protei	3e-07

>gnl|CDD|144618 pfam01091, PTN_MK_C, PTN/MK heparin-binding protein family, C-terminal domain

 Score = 60.2 bits (146), Expect = 1e-12
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 60  CKYDKSSWSECDPNTHMKNRTLTLKKGSPTT-CEATKSISRKCKKACRY----EKGSWS 113
           CKY   +W ECD  T  K RT TLKK      C+ T +IS+ C K  +Y    +KG   
Sbjct: 4   CKYKFEAWGECDAKTGTKTRTGTLKKALYNAECQQTVTISKPCTKKTKYKPKAKKGKGK 62

Length = 63

>gnl|CDD|144618 pfam01091, PTN_MK_C, PTN/MK heparin-binding protein family, C-terminal domain

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 105 CRYEKGSWSQCSVAGDM-TRTDMLKEANSDANCEKSRTLTKKCKAK 149
           C+Y+  +W +C       TRT  LK+A  +A C+++ T++K C  K
Sbjct: 4   CKYKFEAWGECDAKTGTKTRTGTLKKALYNAECQQTVTISKPCTKK 49

Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF01091	63	PTN_MK_C: PTN/MK heparin-binding protein family, C	99.85
PF01091	63	PTN_MK_C: PTN/MK heparin-binding protein family, C	99.76
smart00193	80	PTN Pleiotrophin / midkine family. Heparin-binding	99.48
smart00193	80	PTN Pleiotrophin / midkine family. Heparin-binding	99.42
PF00090	49	TSP_1: Thrombospondin type 1 domain; InterPro: IPR	88.55
smart00209	53	TSP1 Thrombospondin type 1 repeats. Type 1 repeats	85.11

>PF01091 PTN_MK_C: PTN/MK heparin-binding protein family, C-terminal domain; InterPro: IPR020090 Several extracellular heparin-binding proteins involved in regulation of growth and differentiation belong to a new family of growth factors

Probab=99.85  E-value=1.1e-22  Score=147.69  Aligned_cols=57  Identities=44%  Similarity=0.861  Sum_probs=17.9

Q ss_pred             CCCCCCCCCcCCCCCCCCceeeeeeeccC-CCCcccceeeeecccccCccc----ccCCCcc
Q psy2587          58 QPCKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTCEATKSISRKCKKACRY----EKGSWSQ  114 (210)
Q Consensus        58 ~dCkY~~g~WseCD~~Tn~kTRTgTLKKa-~~A~Cq~TvtvsKpCkKACRY----ekG~Wse  114 (210)
                      ++|||.||+|||||++|||++|+++||++ ++++|++|++|+|||++.|++    +|+.|.+
T Consensus         2 ~~CrY~kg~W~eCd~~T~~rtRt~~LKk~~~~a~C~~t~titK~C~~~~k~k~~~~K~~gk~   63 (63)
T PF01091_consen    2 ADCRYEKGAWSECDATTNTRTRTDTLKKALSDASCEPTRTITKPCKKKTKAKSKAKKGKGKD   63 (63)
T ss_dssp             -----EE----SS-SSSSS----EE----SSSSS--SSS-----------------------
T ss_pred             CccccccCCcccCcCcCCeEEeeeeecccccCCCCccceEEecccCCccccccccccccCCC
Confidence            58999999999999999999999999999 999999999999999999999    7777754

These growth factors are highly related proteins of about 140 amino acids that contain 10 conserved cysteines probably involved in disulphide bonds, and include pleiotrophin [] (also known as heparin-binding growth-associated molecule HB-GAM, heparin-binding growth factor 8 HBGF-8, heparin-binding neutrophic factor HBNF and osteoblast specific protein OSF-1); midkine (MK) []; retinoic acid-induced heparin-binding protein (RIHB) []; and pleiotrophic factors alpha-1and -2 and beta-1 and -2 from Xenopus laevis, the homologs of midkine and pleiotrophin respectively. Pleiotrophin is a heparin-binding protein that has neurotrophic activity and has mitogenic activity towards fibroblasts. It is highly expressed in brain and uterus tissues, but is also found in gut, muscle and skin. It is thought to possess an important brain-specific function. Midkine is a regulator of differentiation whose expression is regulated by retinoic acid, and, like pleiotrophin, is a heparin-binding growth/differentiation factor that acts on fibroblasts and nerve cells.; GO: 0008083 growth factor activity; PDB: 1MKC_A.

>PF01091 PTN_MK_C: PTN/MK heparin-binding protein family, C-terminal domain; InterPro: IPR020090 Several extracellular heparin-binding proteins involved in regulation of growth and differentiation belong to a new family of growth factors

Probab=99.76  E-value=1.3e-19  Score=131.83  Aligned_cols=49  Identities=57%  Similarity=1.008  Sum_probs=17.1

Q ss_pred             cCcccccCCCccCCcC-cceeeecccccccCccccccceeeeecCCCCCC
Q psy2587         103 KACRYEKGSWSQCSVA-GDMTRTDMLKEANSDANCEKSRTLTKKCKAKNS  151 (210)
Q Consensus       103 KACRYekG~WseCd~~-g~~TRtdkLK~a~~da~Cq~TRTVsKpCkkg~~  151 (210)
                      .+|||+||+|||||++ ++|||+|+||+++++++||+||+|+|||+++..
T Consensus         2 ~~CrY~kg~W~eCd~~T~~rtRt~~LKk~~~~a~C~~t~titK~C~~~~k   51 (63)
T PF01091_consen    2 ADCRYEKGAWSECDATTNTRTRTDTLKKALSDASCEPTRTITKPCKKKTK   51 (63)
T ss_dssp             -----EE----SS-SSSSS----EE----SSSSS--SSS-----------
T ss_pred             CccccccCCcccCcCcCCeEEeeeeecccccCCCCccceEEecccCCccc
Confidence            4899999999999976 899999999999999999999999999999843

These growth factors are highly related proteins of about 140 amino acids that contain 10 conserved cysteines probably involved in disulphide bonds, and include pleiotrophin [] (also known as heparin-binding growth-associated molecule HB-GAM, heparin-binding growth factor 8 HBGF-8, heparin-binding neutrophic factor HBNF and osteoblast specific protein OSF-1); midkine (MK) []; retinoic acid-induced heparin-binding protein (RIHB) []; and pleiotrophic factors alpha-1and -2 and beta-1 and -2 from Xenopus laevis, the homologs of midkine and pleiotrophin respectively. Pleiotrophin is a heparin-binding protein that has neurotrophic activity and has mitogenic activity towards fibroblasts. It is highly expressed in brain and uterus tissues, but is also found in gut, muscle and skin. It is thought to possess an important brain-specific function. Midkine is a regulator of differentiation whose expression is regulated by retinoic acid, and, like pleiotrophin, is a heparin-binding growth/differentiation factor that acts on fibroblasts and nerve cells.; GO: 0008083 growth factor activity; PDB: 1MKC_A.

>smart00193 PTN Pleiotrophin / midkine family

Probab=99.48  E-value=8.1e-15  Score=111.03  Aligned_cols=48  Identities=38%  Similarity=0.638  Sum_probs=44.8

Q ss_pred             cceeeeeccCCCcc---CCCCCCCCCcCCCCCCCCceeeeeeeccC-CCCcc
Q psy2587          44 AHEVLIRNTRGAEK---QPCKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTC   91 (210)
Q Consensus        44 dhevl~R~~rgakk---~dCkY~~g~WseCD~~Tn~kTRTgTLKKa-~~A~C   91 (210)
                      -..+-+|+|.++|+   +||+|+|++|+|||++|++++|+|+|||+ ++|+|
T Consensus        29 tkk~kCkiPCNwKK~fGadCKYkf~~WgeCD~~Tg~k~RsgtLKkal~na~C   80 (80)
T smart00193       29 TRKLKCKIPCNWKKQFGADCKYKFESWGECDANTGLKTRSGTLKKALYNADC   80 (80)
T ss_pred             hheeeeeccccchhhcCcccceeccCccccccccCcccccchHHhhhhcCCC
Confidence            44567899999998   89999999999999999999999999999 99998

Heparin-binding domain family.

>smart00193 PTN Pleiotrophin / midkine family

Probab=99.42  E-value=6.4e-14  Score=106.20  Aligned_cols=65  Identities=32%  Similarity=0.724  Sum_probs=54.5

Q ss_pred             CCCcCCCCCCCC---ceeeeeeeccCCCCcccceeeeec---ccc------cCcccccCCCccCCcC-cceeeecccccc
Q psy2587          64 KSSWSECDPNTH---MKNRTLTLKKGSPTTCEATKSISR---KCK------KACRYEKGSWSQCSVA-GDMTRTDMLKEA  130 (210)
Q Consensus        64 ~g~WseCD~~Tn---~kTRTgTLKKa~~A~Cq~TvtvsK---pCk------KACRYekG~WseCd~~-g~~TRtdkLK~a  130 (210)
                      .++|+.|.|+.+   +..|++|        |.+..+..|   ||+      ..|+|.|++|+|||++ ++++|+++||+|
T Consensus         3 ew~~g~Cvp~~gDCG~G~REgT--------C~~~tkk~kCkiPCNwKK~fGadCKYkf~~WgeCD~~Tg~k~RsgtLKka   74 (80)
T smart00193        3 EWQWGPCIPNSKDCGLGTREGT--------CGQETRKLKCKIPCNWKKQFGADCKYKFESWGECDANTGLKTRSGTLKKA   74 (80)
T ss_pred             ccccccccCCCCcccCcccccc--------hhhhhheeeeeccccchhhcCcccceeccCccccccccCcccccchHHhh
Confidence            678999999886   7788877        544433333   886      5999999999999976 999999999999


Q ss_pred             cCcccc
Q psy2587         131 NSDANC  136 (210)
Q Consensus       131 ~~da~C  136 (210)
                      +++++|
T Consensus        75 l~na~C   80 (80)
T smart00193       75 LYNADC   80 (80)
T ss_pred             hhcCCC
Confidence            999998

Heparin-binding domain family.

>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu

Probab=88.55  E-value=0.48  Score=30.03  Aligned_cols=41  Identities=29%  Similarity=0.572  Sum_probs=28.3

Q ss_pred             ccCCCccCCcC---cceeeecccccc-cCccccccceeeeecCCC
Q psy2587         108 EKGSWSQCSVA---GDMTRTDMLKEA-NSDANCEKSRTLTKKCKA  148 (210)
Q Consensus       108 ekG~WseCd~~---g~~TRtdkLK~a-~~da~Cq~TRTVsKpCkk  148 (210)
                      +++.|++|+..   |.++|.-..... .....|.....-+++|..
T Consensus         2 ~Ws~Ws~CS~tCg~G~~~R~r~c~~~~~~~~~C~~~~~~~~~C~~   46 (49)
T PF00090_consen    2 EWSEWSPCSATCGGGVQTRTRTCQSPPDGGESCPGPDQETRPCNM   46 (49)
T ss_dssp             SBSS--SSSSSSSSEEEEEEECSCTTBTTSSTCHSCSEEEEEEEC
T ss_pred             ccCcCCCCccccccCCceeEEEECcccCCCCCCCCCCcCcCccCc
Confidence            57999999865   677888877754 456778776666778743

They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....

>smart00209 TSP1 Thrombospondin type 1 repeats

Probab=85.11  E-value=1.3  Score=28.47  Aligned_cols=43  Identities=33%  Similarity=0.540  Sum_probs=28.1

Q ss_pred             cccCCCccCCcC---cceeeecccccc---cCccccccceeeeecCCCC
Q psy2587         107 YEKGSWSQCSVA---GDMTRTDMLKEA---NSDANCEKSRTLTKKCKAK  149 (210)
Q Consensus       107 YekG~WseCd~~---g~~TRtdkLK~a---~~da~Cq~TRTVsKpCkkg  149 (210)
                      .+++.|++|..+   |.++|+-.....   .....|.......++|...
T Consensus         2 ~~ws~Ws~Cs~tCg~G~~~R~r~c~~~~~~~~~~~C~~~~~~~~~C~~~   50 (53)
T smart00209        2 SEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQ   50 (53)
T ss_pred             CCccCcccccCCCCCCeEEEEEecCCCCCCCCCCcCcCCCCEEeecCCC
Confidence            468999999864   566666543321   2467888766666777653

Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1mkc_A	43	Protein (midkine); heparin-binding growth factor;	3e-05

>1mkc_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.2 Length = 43

 Score = 39.4 bits (91), Expect = 3e-05
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 60  CKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTCEATKSISRKC 101
           CKY   +W  CD  T  K R  TLKK      C+ T  +++ C
Sbjct: 1   CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
1mkc_A	43	Protein (midkine); heparin-binding growth factor;	99.83
1mkc_A	43	Protein (midkine); heparin-binding growth factor;	99.74
1lsl_A	113	Thrombospondin 1; TSP-1, TSR, cell adhesion; HET:	95.93
3r6b_A	153	Thrombospondin-1; cell adhesion, disulfide bond, E	95.37
1w0r_A	442	Properdin, factor P; X-RAY scattering, analytical	93.43
1w0r_A	442	Properdin, factor P; X-RAY scattering, analytical	93.27
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	91.58
1vex_A	56	F-spondin; TSR, cell adhesion; NMR {Rattus norvegi	89.25

>1mkc_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.2

Probab=99.83  E-value=1.3e-21  Score=132.65  Aligned_cols=42  Identities=38%  Similarity=0.754  Sum_probs=41.5

Q ss_pred             CCCCCCCcCCCCCCCCceeeeeeeccC-CCCcccceeeeeccc
Q psy2587          60 CKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTCEATKSISRKC  101 (210)
Q Consensus        60 CkY~~g~WseCD~~Tn~kTRTgTLKKa-~~A~Cq~TvtvsKpC  101 (210)
                      |||+||+|+|||++||+++|+++|||| ++|+||+|++|||||
T Consensus         1 CkY~~~~W~eCD~~T~~ktRt~tLKkal~~a~C~~t~tvsKpC   43 (43)
T 1mkc_A            1 CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC   43 (43)
T ss_dssp             CCCEECCCCSSCSSSSSCCCCEECCCCSSSSSCCSSSCCCCCC
T ss_pred             CCccccccccccCCCCeEEeeeeeecccccCcCCCcceecCCC
Confidence            999999999999999999999999999 899999999999998

>1mkc_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.2

Probab=99.74  E-value=4.2e-19  Score=120.32  Aligned_cols=42  Identities=33%  Similarity=0.787  Sum_probs=40.9

Q ss_pred             cccccCCCccCCcC-cceeeecccccccCccccccceeeeecC
Q psy2587         105 CRYEKGSWSQCSVA-GDMTRTDMLKEANSDANCEKSRTLTKKC  146 (210)
Q Consensus       105 CRYekG~WseCd~~-g~~TRtdkLK~a~~da~Cq~TRTVsKpC  146 (210)
                      |||.||+|+|||++ |+++|+++||+++++++||+|++|+|||
T Consensus         1 CkY~~~~W~eCD~~T~~ktRt~tLKkal~~a~C~~t~tvsKpC   43 (43)
T 1mkc_A            1 CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC   43 (43)
T ss_dssp             CCCEECCCCSSCSSSSSCCCCEECCCCSSSSSCCSSSCCCCCC
T ss_pred             CCccccccccccCCCCeEEeeeeeecccccCcCCCcceecCCC
Confidence            99999999999976 9999999999999999999999999999

>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1

Probab=95.93  E-value=0.028  Score=41.14  Aligned_cols=85  Identities=24%  Similarity=0.483  Sum_probs=56.8

Q ss_pred             CCCcCCCCCCCC--ceeeeeeeccC----CCCcccceeeeecccc-cCccc-----ccCCCccCCcC---cceeeecccc
Q psy2587          64 KSSWSECDPNTH--MKNRTLTLKKG----SPTTCEATKSISRKCK-KACRY-----EKGSWSQCSVA---GDMTRTDMLK  128 (210)
Q Consensus        64 ~g~WseCD~~Tn--~kTRTgTLKKa----~~A~Cq~TvtvsKpCk-KACRY-----ekG~WseCd~~---g~~TRtdkLK  128 (210)
                      -++|++|..+=+  +++|+-+....    ....|......+++|+ ..|..     ++++|++|..+   |.++|+-.-.
T Consensus         8 Ws~Ws~CS~tCG~G~~~R~R~C~~~~p~~~g~~C~g~~~e~~~C~~~~Cp~~g~w~~Ws~Ws~Cs~tCG~G~~~R~r~C~   87 (113)
T 1lsl_A            8 WSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCN   87 (113)
T ss_dssp             CCCCCCCSCSSSEEEEEEECCSCTTCCCTTSCCCCSCSEEEEEEECCCCCBCCCCCCCCCCCCCSCSSSCEEEEEECCSC
T ss_pred             CCCCCCCcCcCCCceEEEEEEeCCCCCCCCCCcCCCCCceeeEcccccccccccccCcCCccCccCcCCCCeEEEEEEeC
Confidence            468999987644  66666655432    3457987777777776 35653     46899999864   6777776654


Q ss_pred             cc---cCccccccceeeeecCCC
Q psy2587         129 EA---NSDANCEKSRTLTKKCKA  148 (210)
Q Consensus       129 ~a---~~da~Cq~TRTVsKpCkk  148 (210)
                      ..   .+...|.-..+-++.|+.
T Consensus        88 ~~~p~~gg~~C~g~~~e~~~C~~  110 (113)
T 1lsl_A           88 NPTPQFGGKDCVGDVTENQICNK  110 (113)
T ss_dssp             TTCCBTTCCCCCSCSEEEEEECC
T ss_pred             CCCcccCCCCCCCCCceEeccCC
Confidence            21   345678877777777765

>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens}

Probab=95.37  E-value=0.055  Score=42.12  Aligned_cols=91  Identities=23%  Similarity=0.458  Sum_probs=58.7

Q ss_pred             CCCCCCC-CCcCCCCCCC--Cceeeeeeecc----CCCCcccceeeeecccc-cCcc-----cccCCCccCCcC---cce
Q psy2587          58 QPCKYDK-SSWSECDPNT--HMKNRTLTLKK----GSPTTCEATKSISRKCK-KACR-----YEKGSWSQCSVA---GDM  121 (210)
Q Consensus        58 ~dCkY~~-g~WseCD~~T--n~kTRTgTLKK----a~~A~Cq~TvtvsKpCk-KACR-----YekG~WseCd~~---g~~  121 (210)
                      .++.+.. ++|++|..+=  ++++|+-+...    .....|+.....+++|+ ..|.     ..+++|++|..+   |.+
T Consensus        10 vdg~Ws~Ws~Ws~CS~tCG~G~~~R~r~C~~~~p~~~g~~C~g~~~~~~~C~~~~Cp~~~~w~~Ws~Ws~Cs~tCG~G~~   89 (153)
T 3r6b_A           10 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQ   89 (153)
T ss_dssp             CCCCCCCCCCCCCCSCSSSEECCEEECCSCTTCCCTTCCCCCSCSEEECCEECSCCCBCCCCCCCCCCCCCSCSSSSEEE
T ss_pred             cCCccCCCCCCCCCCCCCCCccEEEEEEeCCCCCCCccccCCCcceeeeccccccccccCccccccccCCCCCcCCCceE
Confidence            4555544 6799998753  45566655432    14567987777888886 4565     356889999864   567


Q ss_pred             eeeccccc---ccCccccccceeeeecCCC
Q psy2587         122 TRTDMLKE---ANSDANCEKSRTLTKKCKA  148 (210)
Q Consensus       122 TRtdkLK~---a~~da~Cq~TRTVsKpCkk  148 (210)
                      +|+-.--.   ..+...|.....-++.|..
T Consensus        90 ~R~r~C~~p~p~~gg~~C~g~~~e~~~C~~  119 (153)
T 3r6b_A           90 KRSRLCNNPTPQFGGKDCVGDVTENQICNK  119 (153)
T ss_dssp             EEECCSCTTCCBTTCCCCCSCSEEEEEECC
T ss_pred             EEEEEeCCCCccCCCCCCCCCCccEeeeCC
Confidence            77765432   2346678776666666665

>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A

Probab=93.43  E-value=0.15  Score=45.92  Aligned_cols=87  Identities=18%  Similarity=0.424  Sum_probs=58.3

Q ss_pred             CCC-CCcCCCCCCC--Cc----eeeeeeeccC------CCCcccceeeeeccccc--Cccc-----ccCCCccCCcC---
Q psy2587          62 YDK-SSWSECDPNT--HM----KNRTLTLKKG------SPTTCEATKSISRKCKK--ACRY-----EKGSWSQCSVA---  118 (210)
Q Consensus        62 Y~~-g~WseCD~~T--n~----kTRTgTLKKa------~~A~Cq~TvtvsKpCkK--ACRY-----ekG~WseCd~~---  118 (210)
                      +.. ++|++|..+=  ++    ++|+-+-...      ....|......+++|+.  .|..     .+++|++|..+   
T Consensus       169 W~~Ws~WS~CS~tCG~G~~~~~q~R~r~C~~~~~~~~~~g~~C~g~~~e~~~C~~~~~Cp~~g~W~~Ws~WS~CS~tCG~  248 (442)
T 1w0r_A          169 WATWGPWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVTCGL  248 (442)
T ss_pred             cceecccccCCccCCCCCccCceEEEEEecCCCcCccCCCcCCCCCcceeEeecccCCcccccccccccccCCcCCccCC
Confidence            555 8999998753  34    6666665443      24578887778888864  2764     35889999864   


Q ss_pred             cceeeeccccc---ccCccccccceeeeecCCC
Q psy2587         119 GDMTRTDMLKE---ANSDANCEKSRTLTKKCKA  148 (210)
Q Consensus       119 g~~TRtdkLK~---a~~da~Cq~TRTVsKpCkk  148 (210)
                      |+++|+-.-..   ..+...|....+.++.|..
T Consensus       249 G~q~R~r~C~~~~p~~gg~~C~g~~~~~~~C~~  281 (442)
T 1w0r_A          249 GQTMEQRTCNHPVPQHGGPFCAGDATRTHICNT  281 (442)
T ss_pred             CceeeEEEeCCCCCCCCCCCCCCCCcceeeCCC
Confidence            67777765542   1346688877667777765

>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A

Probab=93.27  E-value=0.16  Score=45.63  Aligned_cols=88  Identities=18%  Similarity=0.491  Sum_probs=58.8

Q ss_pred             CCC-CCcCCCCCC--CCceeeeeeeccC---CCCcccceeeeecccc--cCcc----cc-cCCCccCCcC---cc----e
Q psy2587          62 YDK-SSWSECDPN--THMKNRTLTLKKG---SPTTCEATKSISRKCK--KACR----YE-KGSWSQCSVA---GD----M  121 (210)
Q Consensus        62 Y~~-g~WseCD~~--Tn~kTRTgTLKKa---~~A~Cq~TvtvsKpCk--KACR----Ye-kG~WseCd~~---g~----~  121 (210)
                      +.. ++|++|..+  .++++|+-+-...   ....|......+++|+  ..|.    +. +++|++|..+   |.    +
T Consensus       112 W~~W~~Ws~CS~tCG~G~q~R~r~C~~~~~~~~~~C~g~~~~~~~C~~~~~Cp~~~~W~~Ws~WS~CS~tCG~G~~~~~q  191 (442)
T 1w0r_A          112 WSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWGPWTPCSASCHGGPHEPKE  191 (442)
T ss_pred             eeeCCCCCCCCCCCCCCceEEEEEeCCcCCCCCCCCCCCcceecCCCCcCccccccccceecccccCCccCCCCCccCce
Confidence            443 889999764  4577777766543   3468987777777885  4665    33 3999999864   45    7


Q ss_pred             eeeccccccc-----CccccccceeeeecCCCC
Q psy2587         122 TRTDMLKEAN-----SDANCEKSRTLTKKCKAK  149 (210)
Q Consensus       122 TRtdkLK~a~-----~da~Cq~TRTVsKpCkkg  149 (210)
                      +|+-.-....     ....|......+++|...
T Consensus       192 ~R~r~C~~~~~~~~~~g~~C~g~~~e~~~C~~~  224 (442)
T 1w0r_A          192 TRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGL  224 (442)
T ss_pred             EEEEEecCCCcCccCCCcCCCCCcceeEeeccc
Confidence            7776655321     456787766667777654

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=91.58  E-value=0.17  Score=49.43  Aligned_cols=85  Identities=18%  Similarity=0.440  Sum_probs=48.5

Q ss_pred             CCCcCCCCCC--CCceeeeeeeccC---CCCcccce--eeeeccc-----ccCcc-cccCCCccCCcC-cceeeeccccc
Q psy2587          64 KSSWSECDPN--THMKNRTLTLKKG---SPTTCEAT--KSISRKC-----KKACR-YEKGSWSQCSVA-GDMTRTDMLKE  129 (210)
Q Consensus        64 ~g~WseCD~~--Tn~kTRTgTLKKa---~~A~Cq~T--vtvsKpC-----kKACR-YekG~WseCd~~-g~~TRtdkLK~  129 (210)
                      -++|++|..+  .++++|+-+....   ....|...  ...+++|     +..|. -++++|++|+.- |.++|+-....
T Consensus         8 Ws~Ws~CS~tCG~G~q~R~R~c~~~~~~~~~~C~~~c~~~e~~~C~~~~Cp~~c~w~~Ws~Ws~Cs~C~g~~~R~R~~~~   87 (913)
T 3t5o_A            8 WTQWTSCSKTCNSGTQSRHRQIVVDKYYQENFCEQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLR   87 (913)
T ss_dssp             BCCCCCCSCSSSCEEEEEEBCCCCCHHHHHTTHHHHCCCEEEEEECCSCCCBCCEECCCCCCCCCCSSSCEECCBCCEEE
T ss_pred             CCCCccccCCCCCeeEEEEEEEccCCCCCCcCCCCcCcCceeeeeccccccccccccccCCccCCCCcccccceeeEecc
Confidence            4689999775  4566676665432   22345432  4455555     55555 357999999853 66666666532


Q ss_pred             --ccCccccccceeeeecCCC
Q psy2587         130 --ANSDANCEKSRTLTKKCKA  148 (210)
Q Consensus       130 --a~~da~Cq~TRTVsKpCkk  148 (210)
                        ..+...|.....-+++|..
T Consensus        88 ~~~~gg~~C~g~~~e~~~C~~  108 (913)
T 3t5o_A           88 PSQFGGQPCTAPLVAFQPCIP  108 (913)
T ss_dssp             CEETTCCCCCSCSBCCEECCC
T ss_pred             CccCCCCCCCCCcccccccCC
Confidence              2334456644444455544

>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}

Probab=89.25  E-value=0.47  Score=30.70  Aligned_cols=41  Identities=34%  Similarity=0.599  Sum_probs=29.4

Q ss_pred             ccCCCccCCcC---cceeeecccccccCccccccceeeeecCCC
Q psy2587         108 EKGSWSQCSVA---GDMTRTDMLKEANSDANCEKSRTLTKKCKA  148 (210)
Q Consensus       108 ekG~WseCd~~---g~~TRtdkLK~a~~da~Cq~TRTVsKpCkk  148 (210)
                      ++++|++|..+   |.++|+-..........|.....-+++|..
T Consensus         9 ~Ws~Ws~CS~tCG~G~~~R~R~C~~~~~~~~C~g~~~e~~~C~~   52 (56)
T 1vex_A            9 PWSEWSDCSVTCGKGMRTRQRMLKSLAELGDCNEDLEQAEKCML   52 (56)
T ss_dssp             CCCCCCCCSCSSBSCEEEEECCBCCTTCCCCCCCCSEEEEECCB
T ss_pred             CCCCCCCcCccCCCCCEEEEEeccCCCCCCCCCCCCCeEeecCC
Confidence            57999999864   688888777644334678776666777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1mkca_	43	g.5.1.2 (A:) Midkine, a heparin-binding growth fac	2e-06
d1mkca_	43	g.5.1.2 (A:) Midkine, a heparin-binding growth fac	5e-04

>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic} Length = 43

class: Small proteins
fold: Midkine
superfamily: Midkine
family: Midkine, a heparin-binding growth factor, C-terminal domain
domain: Midkine, a heparin-binding growth factor, C-terminal domain
species: Synthetic

 Score = 41.0 bits (96), Expect = 2e-06
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 60  CKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTCEATKSISRKC 101
           CKY   +W  CD  T  K R  TLKK      C+ T  +++ C
Sbjct: 1   CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 43

>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic} Length = 43

class: Small proteins
fold: Midkine
superfamily: Midkine
family: Midkine, a heparin-binding growth factor, C-terminal domain
domain: Midkine, a heparin-binding growth factor, C-terminal domain
species: Synthetic

 Score = 34.4 bits (79), Expect = 5e-04
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 105 CRYEKGSWSQCSVA-GDMTRTDMLKEANSDANCEKSRTLTKKC 146
           C+Y+  +W  C    G   R   LK+A  +A C+++  +TK C
Sbjct: 1   CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1mkca_	43	Midkine, a heparin-binding growth factor, C-termin	99.8
d1mkca_	43	Midkine, a heparin-binding growth factor, C-termin	99.68
d1vmoa_	163	Vitelline membrane outer protein-I (VMO-I) {Hen (G	88.08
d1vmoa_	163	Vitelline membrane outer protein-I (VMO-I) {Hen (G	85.92
d1lsla2	59	Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [Ta	82.57

>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic}

class: Small proteins
fold: Midkine
superfamily: Midkine
family: Midkine, a heparin-binding growth factor, C-terminal domain
domain: Midkine, a heparin-binding growth factor, C-terminal domain
species: Synthetic

Probab=99.80  E-value=6.2e-21  Score=127.63  Aligned_cols=42  Identities=38%  Similarity=0.754  Sum_probs=41.7

Q ss_pred             CCCCCCCcCCCCCCCCceeeeeeeccC-CCCcccceeeeeccc
Q psy2587          60 CKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTCEATKSISRKC  101 (210)
Q Consensus        60 CkY~~g~WseCD~~Tn~kTRTgTLKKa-~~A~Cq~TvtvsKpC  101 (210)
                      |+|+|++|++||++|++|+|+|+|||+ ++|+||+||+++|||
T Consensus         1 CKYkF~~WG~CD~~Tg~K~R~GtLKkal~na~Cq~Ti~vsKPC   43 (43)
T d1mkca_           1 CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC   43 (43)
T ss_dssp             CCCEECCCCSSCSSSSSCCCCEECCCCSSSSSCCSSSCCCCCC
T ss_pred             CcccccccccccccCCcccccchHHHHHhcccCcceeEeccCC
Confidence            999999999999999999999999999 999999999999998

>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic}

class: Small proteins
fold: Midkine
superfamily: Midkine
family: Midkine, a heparin-binding growth factor, C-terminal domain
domain: Midkine, a heparin-binding growth factor, C-terminal domain
species: Synthetic

Probab=99.68  E-value=4.1e-18  Score=113.84  Aligned_cols=42  Identities=33%  Similarity=0.787  Sum_probs=40.9

Q ss_pred             cccccCCCccCCcC-cceeeecccccccCccccccceeeeecC
Q psy2587         105 CRYEKGSWSQCSVA-GDMTRTDMLKEANSDANCEKSRTLTKKC  146 (210)
Q Consensus       105 CRYekG~WseCd~~-g~~TRtdkLK~a~~da~Cq~TRTVsKpC  146 (210)
                      |+|+|++|++||++ |+++|+|+||+|++|++||+|++|+|||
T Consensus         1 CKYkF~~WG~CD~~Tg~K~R~GtLKkal~na~Cq~Ti~vsKPC   43 (43)
T d1mkca_           1 CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC   43 (43)
T ss_dssp             CCCEECCCCSSCSSSSSCCCCEECCCCSSSSSCCSSSCCCCCC
T ss_pred             CcccccccccccccCCcccccchHHHHHhcccCcceeEeccCC
Confidence            89999999999976 9999999999999999999999999999

>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: beta-Prism I
superfamily: Vitelline membrane outer protein-I (VMO-I)
family: Vitelline membrane outer protein-I (VMO-I)
domain: Vitelline membrane outer protein-I (VMO-I)
species: Hen (Gallus gallus) [TaxId: 9031]

Probab=88.08  E-value=0.34  Score=35.48  Aligned_cols=62  Identities=19%  Similarity=0.235  Sum_probs=40.4

Q ss_pred             CCcCCCCCCCCceeeeeeeccCCCCcccceeeeeccccc-Ccc-------cccCCCccCCcC-cceeeecc
Q psy2587          65 SSWSECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCKK-ACR-------YEKGSWSQCSVA-GDMTRTDM  126 (210)
Q Consensus        65 g~WseCD~~Tn~kTRTgTLKKa~~A~Cq~TvtvsKpCkK-ACR-------YekG~WseCd~~-g~~TRtdk  126 (210)
                      ++|+.|..+.+...|+-+-......+|.....++..|+. .|.       -++++|++|.+. |..||+..
T Consensus        74 s~ws~Cs~tcg~G~~~R~r~~~~~~~~~g~~~~~~~C~~~~c~~~~~~~W~~Ws~ws~cs~~CG~~tr~~~  144 (163)
T d1vmoa_          74 TSFLVCPTGYLVSFSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSWGRFGPWSKRCKICGLQTKVES  144 (163)
T ss_dssp             CCCEECSSSCEEEEEEEECCCCSSCCCCCCCEEEEEETTSCEEECSCCCCSEECCCCCCCCEEEEEEEEES
T ss_pred             cccccCCCCccCceeeeecCCCCCCCCCCcceeeeccCCCCCCCCCCCcccCccccCCCccccCCCeEeCC
Confidence            567779988876555555444455678888888888763 222       234666666666 77777653

>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: beta-Prism I
superfamily: Vitelline membrane outer protein-I (VMO-I)
family: Vitelline membrane outer protein-I (VMO-I)
domain: Vitelline membrane outer protein-I (VMO-I)
species: Hen (Gallus gallus) [TaxId: 9031]

Probab=85.92  E-value=0.83  Score=33.24  Aligned_cols=83  Identities=10%  Similarity=0.064  Sum_probs=46.4

Q ss_pred             CCcCCCCCCCCceeeeeeeccCCCCcccceeeeecccc-------cCc-ccccCCCccCCcC---cceeeecccccccCc
Q psy2587          65 SSWSECDPNTHMKNRTLTLKKGSPTTCEATKSISRKCK-------KAC-RYEKGSWSQCSVA---GDMTRTDMLKEANSD  133 (210)
Q Consensus        65 g~WseCD~~Tn~kTRTgTLKKa~~A~Cq~TvtvsKpCk-------KAC-RYekG~WseCd~~---g~~TRtdkLK~a~~d  133 (210)
                      ++|++|..+=+...|+-+..-.....|.....+...|.       ..+ --++++|+.|..+   +.++|+-.   ..+.
T Consensus        21 s~Ws~CS~tCg~G~~~R~R~c~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~Ws~ws~Cs~tcg~G~~~R~r~---~~~~   97 (163)
T d1vmoa_          21 GIRQFCHSGYANGFALKVEPSQFGRDDTALNGIRLRCLDGSVIESLVGKWGTWTSFLVCPTGYLVSFSLRSEK---SQGG   97 (163)
T ss_dssp             CCCEECSSSCEEEEEEEECCSCSSSCCCCCCEEEEEETTSCEECCSCCSSSEECCCEECSSSCEEEEEEEECC---CCSS
T ss_pred             CCCCCCCCcCCCCeEEeeccCCCCCCccCccccccccccCCcccCCCCCCCcccccccCCCCccCceeeeecC---CCCC
Confidence            78889987655333333322122223333223333222       122 2245788889865   46666542   4567


Q ss_pred             cccccceeeeecCCCCC
Q psy2587         134 ANCEKSRTLTKKCKAKN  150 (210)
Q Consensus       134 a~Cq~TRTVsKpCkkg~  150 (210)
                      .+|.....+...|....
T Consensus        98 ~~~~g~~~~~~~C~~~~  114 (163)
T d1vmoa_          98 GDDTAANNIQFRCSDEA  114 (163)
T ss_dssp             CCCCCCCEEEEEETTSC
T ss_pred             CCCCCcceeeeccCCCC
Confidence            78888888888887753

>d1lsla2 g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TSP-1 type 1 repeat
superfamily: TSP-1 type 1 repeat
family: TSP-1 type 1 repeat
domain: Thrombospondin-1 (TSP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.57  E-value=0.72  Score=29.47  Aligned_cols=48  Identities=21%  Similarity=0.460  Sum_probs=33.3

Q ss_pred             cccCccc-ccCCCccCCcC---cceeeeccccc---ccCccccccceeeeecCCC
Q psy2587         101 CKKACRY-EKGSWSQCSVA---GDMTRTDMLKE---ANSDANCEKSRTLTKKCKA  148 (210)
Q Consensus       101 CkKACRY-ekG~WseCd~~---g~~TRtdkLK~---a~~da~Cq~TRTVsKpCkk  148 (210)
                      |+-+|.+ ++++|++|+.+   |.++|+-+...   ..+...|.-..+-+++|..
T Consensus         2 CPvdg~ws~Ws~Ws~CS~tCG~G~~~R~R~c~~p~p~~gg~~C~G~~~e~~~C~~   56 (59)
T d1lsla2           2 CPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNK   56 (59)
T ss_dssp             CCBCCCCCCCCCCCCCSCSSSCEEEEEECCSCTTCCBTTCCCCCSCSEEEEEECC
T ss_pred             cCcCCCcCCCCCCCCCcCcCCCCcEEEEEEeCCCCcccCCCCCCCCCeEEeEeCC
Confidence            5556663 57999999864   67788877653   2345679866677777864