Psyllid ID: psy2640

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610---
YIISYKKDGPTDTKIKSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDTSLNGGGGIDFTRSQH
ccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccEEEEccccccccccEEEEEEcccccEEEEccEEEEEcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEcccEEEEccHHHHHHHHcccccccccccccHHHHcccccccccccEEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHccccccHHHHHHHHHHccccEEEEccccccEEccccHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccc
cEEEEEcccccHHHHHHHHHHHccccHHHHHHHHcccHccccHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccEEEEcccccccEEEEEEEEcccccEEEEccHEEEccccEEEEccHcccccccHHHHHHHHHHHHccccccccHHEEEEcccccEHcHHHcccHHHHHHHHHHHHHHHHHHHccEEEEcccHHHHHHccccccccccccccccHHccccHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHEcHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
yiisykkdgptdtkiKSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQnlsnepqhtINCLGLAMHHYIISVYVcgntsttsgltvtlsregggdfaLEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMrgitsrqytpafitmsihpvmgekrhTMSAQHQALLEAMEQQSISIAKASVvcslpartsviaaanpvgghynRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASlsgfqsnrnpshstqsftenpnsvqsdiplserlkpgpgeelplipaplLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRkhhhsvdatpvtTRQLESLVRLTQDIQAEPNLFKLLVNslcpsifgHEMVKAGLLLALFggchstngsrgdahvlivgdpglgksqMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLidtslnggggidftrsqh
yiisykkdgptdtkikSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSViaaanpvgghYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPShstqsftenpnsvqSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLidtslnggggidftrsqh
YIISYKKDGPTDTKIKSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIISVYVCGNtsttsgltvtlsREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDTSLNGGGGIDFTRSQH
*************KIKSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVM*********************SISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSE***********************************************PLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSARAKCE**********QDVIDIMKWSLIDTSLNGGGGI*******
YIISYK*DGPTDTKIKSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQW**********PQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASL*****************************************PLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLN****************QLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLAL***********GDAHVLIVG******************************************************FTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDTSLNGGGG********
YIISYKKDGPTDTKIKSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGF**********************DIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSARAK***********AQDVIDIMKWSLIDTSLNGGGGIDFTRSQH
YIISYKKDGPTDTKIKSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGF**************************SER*KPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDTSLNGGGGIDF*****
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YIISYKKDGPTDTKIKSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDTSLNGGGGIDFTRSQH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query613 2.2.26 [Sep-21-2011]
I0IUP3830 DNA helicase MCM8 OS=Gall yes N/A 0.587 0.433 0.490 4e-94
Q9CWV1833 DNA helicase MCM8 OS=Mus yes N/A 0.582 0.428 0.487 8e-94
D3ZVK1830 DNA helicase MCM8 OS=Ratt yes N/A 0.582 0.430 0.487 1e-93
Q9UJA3840 DNA helicase MCM8 OS=Homo yes N/A 0.582 0.425 0.489 2e-88
E1BPX4816 DNA helicase MCM8 OS=Bos yes N/A 0.582 0.437 0.489 3e-87
Q5F310831 DNA helicase MCM8 OS=Xeno N/A N/A 0.584 0.430 0.476 3e-82
Q0V9Q6843 DNA helicase MCM8 OS=Xeno yes N/A 0.539 0.392 0.477 2e-75
P530911017 DNA replication licensing yes N/A 0.371 0.224 0.363 5e-39
Q9UXG1686 Minichromosome maintenanc yes N/A 0.522 0.466 0.286 1e-36
Q86B14867 DNA replication licensing no N/A 0.477 0.337 0.317 6e-36
>sp|I0IUP3|MCM8_CHICK DNA helicase MCM8 OS=Gallus gallus GN=MCM8 PE=1 SV=1 Back     alignment and function desciption
 Score =  345 bits (886), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 207/422 (49%), Positives = 261/422 (61%), Gaps = 62/422 (14%)

Query: 86  VYVCGNTSTTSGLTVTLSREGG-GDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYT 144
           VYVCGNTST+SGLTVTLSR+G  GDFALEAGALVL DQG+C IDEFDKM +         
Sbjct: 467 VYVCGNTSTSSGLTVTLSRDGASGDFALEAGALVLGDQGICGIDEFDKMGS--------- 517

Query: 145 AKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLP 204
                                             QHQALLEAMEQQSIS+AKA +VCSLP
Sbjct: 518 ----------------------------------QHQALLEAMEQQSISLAKAGIVCSLP 543

Query: 205 ARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMA 264
           ARTS++AAANPVGGHYN+AKTV+ENL+MG ALLSRFDLVFILLD P+E  D LLSEHVMA
Sbjct: 544 ARTSIVAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEDHDHLLSEHVMA 603

Query: 265 SLSGFQSNRNPSHSTQSFTENPN--SVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYA 322
             +G Q+  + +  +++  ++ +   V SD PL ERLK  PGE    IP  LL KY+ YA
Sbjct: 604 IRAGKQAVCSSAVVSRTNVQDRSVLEVVSDRPLLERLKISPGENFDAIPHQLLRKYVGYA 663

Query: 323 RKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKL 382
           R+YV  P LS EAA +LQEFYL LRK +    +TP+TTRQLESL+RLT+  ++   L + 
Sbjct: 664 RQYV-HPHLSPEAAQVLQEFYLELRKQNQGASSTPITTRQLESLIRLTE-ARSRLELREK 721

Query: 383 LVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAK 442
                   +   E++K  +L     G +S    + D      G     +SQ       AK
Sbjct: 722 CTKEDAEDVI--EIMKYSML-----GTYSDEFGKLDFERSQHGSGMSNRSQ-------AK 767

Query: 443 KFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQL 502
           +F+S L   AE    ++F + +L+Q+A    I V +F +F+ SLNDQG+LLKKG +LYQL
Sbjct: 768 RFVSALSSIAERTYSNLFDLQQLRQVAKELQIRVFDFESFIESLNDQGYLLKKGSRLYQL 827

Query: 503 MS 504
            +
Sbjct: 828 QT 829
Component of the MCM8-MCM9 complex, a complex involved in homologous recombination repair following DNA interstrand cross-links and plays a key role during gametogenesis. The MCM8-MCM9 complex probably acts as a hexameric helicase required to process aberrant forks into homologous recombination substrates and to orchestrate homologous recombination with resection, fork stabilization and fork restart.
Gallus gallus (taxid: 9031)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q9CWV1|MCM8_MOUSE DNA helicase MCM8 OS=Mus musculus GN=Mcm8 PE=1 SV=3 Back     alignment and function description
>sp|D3ZVK1|MCM8_RAT DNA helicase MCM8 OS=Rattus norvegicus GN=Mcm8 PE=2 SV=1 Back     alignment and function description
>sp|Q9UJA3|MCM8_HUMAN DNA helicase MCM8 OS=Homo sapiens GN=MCM8 PE=1 SV=2 Back     alignment and function description
>sp|E1BPX4|MCM8_BOVIN DNA helicase MCM8 OS=Bos taurus GN=MCM8 PE=3 SV=2 Back     alignment and function description
>sp|Q5F310|MCM8_XENLA DNA helicase MCM8 OS=Xenopus laevis GN=mcm8 PE=2 SV=2 Back     alignment and function description
>sp|Q0V9Q6|MCM8_XENTR DNA helicase MCM8 OS=Xenopus tropicalis GN=mcm8 PE=2 SV=1 Back     alignment and function description
>sp|P53091|MCM6_YEAST DNA replication licensing factor MCM6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM6 PE=1 SV=2 Back     alignment and function description
>sp|Q9UXG1|MCM_SULSO Minichromosome maintenance protein MCM OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=MCM PE=1 SV=1 Back     alignment and function description
>sp|Q86B14|MCM6_DICDI DNA replication licensing factor mcm6 OS=Dictyostelium discoideum GN=mcm6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query613
449281884 820 DNA replication licensing factor MCM8 [C 0.587 0.439 0.495 1e-93
12845756489 unnamed protein product [Mus musculus] 0.582 0.730 0.487 7e-93
260830240 844 hypothetical protein BRAFLDRAFT_89899 [B 0.548 0.398 0.473 1e-92
326915088 809 PREDICTED: DNA replication licensing fac 0.587 0.444 0.490 1e-92
327261010 830 PREDICTED: DNA replication licensing fac 0.587 0.433 0.490 1e-92
118087808 830 PREDICTED: DNA replication licensing fac 0.587 0.433 0.490 3e-92
363731538 813 PREDICTED: DNA replication licensing fac 0.587 0.442 0.490 4e-92
31542008 805 DNA helicase MCM8 [Mus musculus] gi|3035 0.582 0.443 0.487 5e-92
74228808 833 unnamed protein product [Mus musculus] 0.582 0.428 0.487 5e-92
148696414 809 minichromosome maintenance deficient 8 ( 0.582 0.441 0.487 5e-92
>gi|449281884|gb|EMC88845.1| DNA replication licensing factor MCM8 [Columba livia] Back     alignment and taxonomy information
 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 209/422 (49%), Positives = 262/422 (62%), Gaps = 62/422 (14%)

Query: 86  VYVCGNTSTTSGLTVTLSREGG-GDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYT 144
           VYVCGNTST+SGLTVTLSR+G  GDFALEAGALVL DQG+C IDEFDKM  Q        
Sbjct: 457 VYVCGNTSTSSGLTVTLSRDGASGDFALEAGALVLGDQGICGIDEFDKMGNQ-------- 508

Query: 145 AKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLP 204
                                              HQALLEAMEQQSIS+AKA +VCSLP
Sbjct: 509 -----------------------------------HQALLEAMEQQSISLAKAGIVCSLP 533

Query: 205 ARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMA 264
           ARTS++AAANPVGGHYN+AKTV+ENL+MG ALLSRFDLVFILLD P+E  D LLSEHVMA
Sbjct: 534 ARTSIVAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEDHDHLLSEHVMA 593

Query: 265 SLSGFQSNRNPSHSTQSFTENPN--SVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYA 322
             +G Q+  + +  T++ T++ +   V SD PL ERLK  PGE    IP  LL KY+ YA
Sbjct: 594 IRAGKQAACSSAVVTRTNTQDRSVLEVVSDRPLLERLKILPGENFDAIPHQLLRKYVGYA 653

Query: 323 RKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKL 382
           R+YV  P LS EAA +LQEFYL LRK +   D+TP+TTRQLESL+RLT+  ++   L + 
Sbjct: 654 RQYV-HPNLSPEAAQVLQEFYLELRKQNQGADSTPITTRQLESLIRLTE-ARSRLELREK 711

Query: 383 LVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAK 442
                   +   E++K  +L     G +S    + D      G     +SQ       AK
Sbjct: 712 CTKEDAEDVI--EIMKYSML-----GTYSDEFGKLDFERSQHGSGMSNRSQ-------AK 757

Query: 443 KFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQL 502
           +F+S L   AE    ++F + +L+Q+A    I V +F +F+ SLNDQG+LLKKG ++YQL
Sbjct: 758 RFVSALNSVAERTYNNLFDLQQLRQIAKELQIRVSDFESFIGSLNDQGYLLKKGSRVYQL 817

Query: 503 MS 504
            +
Sbjct: 818 QT 819

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota
>gi|12845756|dbj|BAB26885.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|260830240|ref|XP_002610069.1| hypothetical protein BRAFLDRAFT_89899 [Branchiostoma floridae] gi|229295432|gb|EEN66079.1| hypothetical protein BRAFLDRAFT_89899 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|326915088|ref|XP_003203853.1| PREDICTED: DNA replication licensing factor MCM8-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|327261010|ref|XP_003215325.1| PREDICTED: DNA replication licensing factor MCM8-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|118087808|ref|XP_001232579.1| PREDICTED: DNA replication licensing factor MCM8 isoform 1 [Gallus gallus] gi|408407648|sp|I0IUP3.1|MCM8_CHICK RecName: Full=DNA helicase MCM8; AltName: Full=Minichromosome maintenance 8 gi|383212244|dbj|BAM08992.1| minichromosome maintenance complex component 8 [Gallus gallus] Back     alignment and taxonomy information
>gi|363731538|ref|XP_003640992.1| PREDICTED: DNA replication licensing factor MCM8 isoform 2 [Gallus gallus] Back     alignment and taxonomy information
>gi|31542008|ref|NP_079952.2| DNA helicase MCM8 [Mus musculus] gi|30354735|gb|AAH52070.1| Minichromosome maintenance deficient 8 (S. cerevisiae) [Mus musculus] Back     alignment and taxonomy information
>gi|74228808|dbj|BAE21892.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|148696414|gb|EDL28361.1| minichromosome maintenance deficient 8 (S. cerevisiae), isoform CRA_a [Mus musculus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query613
UNIPROTKB|E2R9M1836 MCM8 "Uncharacterized protein" 0.510 0.374 0.513 1.8e-96
RGD|1305218830 Mcm8 "minichromosome maintenan 0.510 0.377 0.510 4.9e-96
UNIPROTKB|Q9UJA3840 MCM8 "DNA helicase MCM8" [Homo 0.510 0.372 0.513 1.3e-95
MGI|MGI:1913884833 Mcm8 "minichromosome maintenan 0.510 0.375 0.510 1.3e-95
UNIPROTKB|I0IUP3830 MCM8 "DNA helicase MCM8" [Gall 0.510 0.377 0.501 5.5e-95
UNIPROTKB|E1BPX4816 MCM8 "DNA helicase MCM8" [Bos 0.510 0.383 0.513 8.9e-95
UNIPROTKB|Q5F310831 mcm8 "DNA helicase MCM8" [Xeno 0.507 0.374 0.492 4.2e-91
UNIPROTKB|F1SBM1378 MCM8 "Uncharacterized protein" 0.510 0.828 0.516 2.7e-86
UNIPROTKB|Q0V9Q6843 mcm8 "DNA helicase MCM8" [Xeno 0.463 0.336 0.504 1.7e-84
DICTYBASE|DDB_G0283009812 mcm8 "MCM family protein" [Dic 0.500 0.378 0.423 2.7e-76
UNIPROTKB|E2R9M1 MCM8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 717 (257.5 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
 Identities = 171/333 (51%), Positives = 218/333 (65%)

Query:   176 MSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQA 235
             M  QHQALLEAMEQQSIS+AKA +VCSLPARTS+IAAANPVGGHYN+AKTV+ENL+MG A
Sbjct:   519 MGNQHQALLEAMEQQSISLAKAGMVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSA 578

Query:   236 LLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNS----VQS 291
             LLSRFDLVFILLD P+E  D LLSEHV+A  +G Q   + +   +  +++ N+    V S
Sbjct:   579 LLSRFDLVFILLDTPNEDHDHLLSEHVIAIRAGKQRTVSSATIARMNSQDSNTSVLEVVS 638

Query:   292 DIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHH 351
             D PLSERLK  PGE + LIP  LL KY+ YAR+YV  P LSTEAA +LQ+FYL LRK   
Sbjct:   639 DKPLSERLKVVPGETIDLIPHQLLRKYIGYARQYVY-PRLSTEAAQILQDFYLELRKQSQ 697

Query:   352 SVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHS 411
              ++++P+TTRQLESL+RLT+  +A   L +         I   E++K  +L     G +S
Sbjct:   698 RLNSSPITTRQLESLIRLTE-ARARLELREEATKEDAEDIV--EVMKYSML-----GTYS 749

Query:   412 TNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATS 471
                 + D         G G S        AK+FIS L   AE    ++F   +L+Q+A  
Sbjct:   750 DEFGKLDFER---SQHGSGMSNR----STAKRFISALNNIAERTYNNLFQFQQLRQIAKE 802

Query:   472 ANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMS 504
              NI V +F  F+ SLNDQG+LLKKG ++YQL +
Sbjct:   803 LNIQVVDFENFIGSLNDQGYLLKKGPKVYQLQT 835
GO:0005524 "ATP binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0006260 "DNA replication" evidence=IEA
RGD|1305218 Mcm8 "minichromosome maintenance complex component 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UJA3 MCM8 "DNA helicase MCM8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913884 Mcm8 "minichromosome maintenance deficient 8 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I0IUP3 MCM8 "DNA helicase MCM8" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPX4 MCM8 "DNA helicase MCM8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F310 mcm8 "DNA helicase MCM8" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBM1 MCM8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0V9Q6 mcm8 "DNA helicase MCM8" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283009 mcm8 "MCM family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query613
pfam00493327 pfam00493, MCM, MCM2/3/5 family 1e-85
COG1241682 COG1241, MCM2, Predicted ATPase involved in replic 8e-71
smart00350509 smart00350, MCM, minichromosome maintenance protei 4e-65
PTZ00111915 PTZ00111, PTZ00111, DNA replication licensing fact 2e-29
pfam00493327 pfam00493, MCM, MCM2/3/5 family 6e-23
COG1241 682 COG1241, MCM2, Predicted ATPase involved in replic 3e-20
smart00350509 smart00350, MCM, minichromosome maintenance protei 7e-18
PTZ00111 915 PTZ00111, PTZ00111, DNA replication licensing fact 2e-11
>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family Back     alignment and domain information 
 Score =  269 bits (691), Expect = 1e-85
 Identities = 110/290 (37%), Positives = 146/290 (50%), Gaps = 75/290 (25%)

Query: 84  ISVYVCGNTSTTSGLTVTLSR-EGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGML 142
            +VY  G  S+ +GLT  + R    G++ LEAGALVLAD GVCCIDEFDKM+ + +    
Sbjct: 83  RAVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKMNEEDRV--- 139

Query: 143 YTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCS 202
                                                  A+ EAMEQQ+ISIAKA +V +
Sbjct: 140 ---------------------------------------AIHEAMEQQTISIAKAGIVAT 160

Query: 203 LPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHV 262
           L AR SV+AAANP+ G Y+  K+VAEN+ +   LLSRFDL+F+LLD PDE  D  L++H+
Sbjct: 161 LNARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEERDEELAKHI 220

Query: 263 MASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYA 322
           +                                         E    I   LL KY+AYA
Sbjct: 221 VDLHRASDEEE------------------------------IETEDEIDPELLRKYIAYA 250

Query: 323 RKYVSKPELSTEAALLLQEFYLNLRK-HHHSVDATPVTTRQLESLVRLTQ 371
           R+ + KP+LS EA   L  +Y+ LRK    S  + P+T RQLESL+RL++
Sbjct: 251 RENI-KPKLSDEAREKLVNWYVELRKESEGSRGSIPITVRQLESLIRLSE 299

Length = 327
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins Back     alignment and domain information
>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family Back     alignment and domain information
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins Back     alignment and domain information
>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 613
COG1241682 MCM2 Predicted ATPase involved in replication cont 100.0
KOG0480|consensus764 100.0
KOG0481|consensus729 100.0
KOG0478|consensus804 100.0
KOG0482|consensus721 100.0
PTZ00111915 DNA replication licensing factor MCM4; Provisional 100.0
KOG0477|consensus854 100.0
KOG0479|consensus818 100.0
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 100.0
smart00350509 MCM minichromosome maintenance proteins. 100.0
KOG0480|consensus764 100.0
KOG0478|consensus804 99.96
KOG0477|consensus854 99.95
COG1241682 MCM2 Predicted ATPase involved in replication cont 99.95
PTZ00111915 DNA replication licensing factor MCM4; Provisional 99.93
KOG0482|consensus721 99.92
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 99.92
KOG0481|consensus729 99.9
smart00350509 MCM minichromosome maintenance proteins. 99.89
KOG0479|consensus 818 99.82
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 99.78
PRK09862506 putative ATP-dependent protease; Provisional 99.72
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 99.68
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 99.67
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 99.54
COG0606490 Predicted ATPase with chaperone activity [Posttran 99.54
PRK13407334 bchI magnesium chelatase subunit I; Provisional 99.51
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 99.5
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 99.36
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 99.31
PRK13531498 regulatory ATPase RavA; Provisional 99.11
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 98.96
PF07726131 AAA_3: ATPase family associated with various cellu 98.75
COG0714329 MoxR-like ATPases [General function prediction onl 98.7
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 98.61
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 98.58
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 98.47
PRK13765637 ATP-dependent protease Lon; Provisional 98.39
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 97.99
PHA02244383 ATPase-like protein 97.58
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 97.27
COG1067647 LonB Predicted ATP-dependent protease [Posttransla 96.75
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 96.44
CHL00181287 cbbX CbbX; Provisional 96.43
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 96.37
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 96.26
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 96.14
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 96.08
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 96.07
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 95.87
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 95.82
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 95.36
PF1333596 Mg_chelatase_2: Magnesium chelatase, subunit ChlI 95.08
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 95.03
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 94.75
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 94.56
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 94.29
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 94.09
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 94.06
TIGR01817534 nifA Nif-specific regulatory protein. This model r 93.55
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 93.4
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 93.29
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 93.04
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 92.97
TIGR02974329 phageshock_pspF psp operon transcriptional activat 92.74
COG3829560 RocR Transcriptional regulator containing PAS, AAA 91.95
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 91.69
PRK09862506 putative ATP-dependent protease; Provisional 91.07
PRK11608326 pspF phage shock protein operon transcriptional ac 89.52
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 89.43
COG2204464 AtoC Response regulator containing CheY-like recei 88.97
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 88.65
PRK15424538 propionate catabolism operon regulatory protein Pr 88.35
PF13654509 AAA_32: AAA domain; PDB: 3K1J_B. 87.68
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 87.56
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 86.92
TIGR00763775 lon ATP-dependent protease La. This protein is ind 86.87
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 85.85
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 85.82
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 85.33
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 84.9
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 84.24
PRK05022509 anaerobic nitric oxide reductase transcription reg 83.99
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 83.98
KOG0745|consensus564 81.61
TIGR02329526 propionate_PrpR propionate catabolism operon regul 81.49
PRK10365441 transcriptional regulatory protein ZraR; Provision 80.01
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=7.9e-83  Score=713.76  Aligned_cols=404  Identities=34%  Similarity=0.501  Sum_probs=351.7

Q ss_pred             CcchHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhhh-hHH
Q psy2640           9 GPTDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHTI-NCL   75 (613)
Q Consensus         9 s~~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~~-~~l   75 (613)
                      ..+.+-.+.|.+ +.++|++|+..  +|+|+++||+|||+|+++|||||+.|.+.++          |.|+|+..+ ++|
T Consensus       258 ~~t~ed~e~i~e-lak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlL  336 (682)
T COG1241         258 EITEEDEEEIKE-LAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLL  336 (682)
T ss_pred             cCCHHHHHHHHH-HhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHH
Confidence            345677788888 99999999977  7999999999999999999999999999875          789999999 666


Q ss_pred             HHhhhhhcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccc
Q psy2640          76 GLAMHHYIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSR  154 (613)
Q Consensus        76 ~la~~~~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~  154 (613)
                      .+..+.+||+|||||+|||++||||+++||+ ||+|+||+|||||||+|||||||||||+.                   
T Consensus       337 k~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~-------------------  397 (682)
T COG1241         337 KYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE-------------------  397 (682)
T ss_pred             HHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh-------------------
Confidence            7788899999999999999999999999999 89999999999999999999999999999                   


Q ss_pred             cccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccc
Q psy2640         155 QYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQ  234 (613)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~  234 (613)
                                             .++.+||||||||||||+||||+++|||||||||||||.+|+||+.+++.+||+||+
T Consensus       398 -----------------------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~  454 (682)
T COG1241         398 -----------------------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPA  454 (682)
T ss_pred             -----------------------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCCh
Confidence                                   489999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHH
Q psy2640         235 ALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPL  314 (613)
Q Consensus       235 ~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~l  314 (613)
                      +|||||||||++.|.|+++.|+.+|+||+..|.+......          .  +  .+.       .+ ....  =++++
T Consensus       455 ~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~----------~--~--~~~-------~~-~~~~--~~~~~  510 (682)
T COG1241         455 PLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEET----------I--S--LDG-------VD-EVEE--RDFEL  510 (682)
T ss_pred             hHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccc----------c--c--ccc-------cc-cccc--CcHHH
Confidence            9999999999999999999999999999999964332100          0  0  000       00 0011  17899


Q ss_pred             HHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccC---CCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC---
Q psy2640         315 LHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHH---SVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC---  388 (613)
Q Consensus       315 LrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~---~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~---  388 (613)
                      ||+||+|||+++ +|+||++|.+.|.+||++||+...   ....+|+|+||||++||||||| |||+|++.|+++||   
T Consensus       511 lrkYI~YAR~~v-~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~-Ak~rLS~~V~~eD~~eA  588 (682)
T COG1241         511 LRKYISYARKNV-TPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAH-AKMRLSDVVEEEDVDEA  588 (682)
T ss_pred             HHHHHHHHhccC-CcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHH-HhhhccCCCCHHHHHHH
Confidence            999999999998 899999999999999999998542   3467899999999999999999 99999999999999   


Q ss_pred             CccchhhHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHH
Q psy2640         389 PSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQL  468 (613)
Q Consensus       389 ~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~  468 (613)
                      ..++..++...+.           ++.+|.+|+ ++..+|.+++++    ++..+.+..+++.......   +..++.+.
T Consensus       589 i~lv~~~l~~v~~-----------dp~~g~~d~-~~~~~~~~~~~~----~~~~~~~~~i~e~~~~~~~---~~~~~~~~  649 (682)
T COG1241         589 IRLVDFSLKTVAV-----------DPEKGKIDI-DIIEPGKSKSKR----DKIEKVLDIIKELVERSED---PVEEIIEE  649 (682)
T ss_pred             HHHHHHHHHHhhc-----------CccCCceeh-hhhccCCcchhh----hhHHHHHHHHHHHhhcccc---hHHHHHHH
Confidence            7777888777533           566788888 778899999998    6667777777765443222   56666555


Q ss_pred             HHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEE
Q psy2640         469 ATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQL  502 (613)
Q Consensus       469 a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l  502 (613)
                      +.  |+++.+++++++.|...|.++.+.+|.|.+
T Consensus       650 ~~--g~~~~~~e~~l~~l~~~g~i~~~~~g~~~~  681 (682)
T COG1241         650 AE--GISEKEVEEALEKLKKKGDILEPNPGYYLL  681 (682)
T ss_pred             Hc--CCCHHHHHHHHHHHHhcCcEeccCCCeeec
Confidence            54  899999999999999999999999998875

>KOG0480|consensus Back     alignment and domain information
>KOG0481|consensus Back     alignment and domain information
>KOG0478|consensus Back     alignment and domain information
>KOG0482|consensus Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>KOG0477|consensus Back     alignment and domain information
>KOG0479|consensus Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>KOG0480|consensus Back     alignment and domain information
>KOG0478|consensus Back     alignment and domain information
>KOG0477|consensus Back     alignment and domain information
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>KOG0482|consensus Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>KOG0481|consensus Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>KOG0479|consensus Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>KOG0745|consensus Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query613
3f9v_A595 Crystal Structure Of A Near Full-Length Archaeal Mc 5e-33
3f9v_A595 Crystal Structure Of A Near Full-Length Archaeal Mc 5e-12
3f8t_A506 Crystal Structure Analysis Of A Full-Length Mcm Hom 5e-06
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595 Back     alignment and structure 
Iteration: 1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 139/290 (47%), Gaps = 82/290 (28%)
Query: 85  SVYVCGNXXXXXXXXXXXXREGG-GDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLY 143
           +VY  G             RE G G++ LEAGALVLAD G+  IDE DKM  + +     
Sbjct: 354 AVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR----- 408
Query: 144 TAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSL 203
                              ++IH                  EAMEQQ++SIAKA +V  L
Sbjct: 409 -------------------VAIH------------------EAMEQQTVSIAKAGIVAKL 431
Query: 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVM 263
            AR +VIAA NP  G Y   + V++N+ +   +LSRFDL+FIL D P E  D  L+ +++
Sbjct: 432 NARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYIL 490
Query: 264 ASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYAR 323
              SG +S +N                                  +I    L KY+AYAR
Sbjct: 491 DVHSG-KSTKN----------------------------------IIDIDTLRKYIAYAR 515
Query: 324 KYVSKPELSTEAALLLQEFYLNLRKHHHSVDATP--VTTRQLESLVRLTQ 371
           KYV+ P++++EA  L+ +F++ +RK       +P  +T RQLE+L+R+++
Sbjct: 516 KYVT-PKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISE 564
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595 Back     alignment and structure
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog From Methanopyrus Kandleri Length = 506 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query613
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 3e-79
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 1e-23
3f8t_A506 Predicted ATPase involved in replication control, 1e-63
3f8t_A506 Predicted ATPase involved in replication control, 3e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595 Back     alignment and structure
 Score =  261 bits (668), Expect = 3e-79
 Identities = 96/291 (32%), Positives = 139/291 (47%), Gaps = 82/291 (28%)

Query: 84  ISVYVCGNTSTTSGLTVTLSR-EGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGML 142
            +VY  G  ST +GLT  + R +G G++ LEAGALVLAD G+  IDE DKM  + +    
Sbjct: 353 RAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR---- 408

Query: 143 YTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCS 202
                               ++IH                  EAMEQQ++SIAKA +V  
Sbjct: 409 --------------------VAIH------------------EAMEQQTVSIAKAGIVAK 430

Query: 203 LPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHV 262
           L AR +VIAA NP  G Y   + V++N+ +   +LSRFDL+FIL D P E  D  L+ ++
Sbjct: 431 LNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYI 489

Query: 263 MASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYA 322
           +   SG                                        +I    L KY+AYA
Sbjct: 490 LDVHSG-----------------------------------KSTKNIIDIDTLRKYIAYA 514

Query: 323 RKYVSKPELSTEAALLLQEFYLNLRK--HHHSVDATPVTTRQLESLVRLTQ 371
           RKYV  P++++EA  L+ +F++ +RK           +T RQLE+L+R+++
Sbjct: 515 RKYV-TPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISE 564
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595 Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506 Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query613
3f8t_A506 Predicted ATPase involved in replication control, 100.0
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 100.0
3f8t_A506 Predicted ATPase involved in replication control, 99.78
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.64
2r44_A331 Uncharacterized protein; putative ATPase, structur 99.49
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 99.46
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 99.45
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 98.95
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 97.98
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 97.9
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 97.76
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 97.73
1ojl_A304 Transcriptional regulatory protein ZRAR; response 97.43
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 97.35
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 97.29
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 97.13
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 97.05
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 96.86
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 96.83
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 96.8
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 95.64
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 95.5
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 95.4
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.4
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 95.22
3nbx_X 500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 95.18
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 94.98
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 94.8
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 93.23
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 92.86
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 92.64
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 91.98
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 91.86
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 91.79
3co5_A143 Putative two-component system transcriptional RES 91.04
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 90.07
3pvs_A447 Replication-associated recombination protein A; ma 89.15
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 88.74
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 88.3
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 87.3
1ltl_A279 DNA replication initiator (CDC21/CDC54); HET: DNA; 87.22
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 83.34
2vl6_A268 SSO MCM N-TER, minichromosome maintenance protein 82.69
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 81.37
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 80.91
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 80.49
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
Probab=100.00  E-value=8e-50  Score=433.10  Aligned_cols=302  Identities=25%  Similarity=0.312  Sum_probs=247.2

Q ss_pred             ecCCCcchHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----ccCCchhhhhHHHHh
Q psy2640           5 YKKDGPTDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----LSNEPQHTINCLGLA   78 (613)
Q Consensus         5 Y~~~s~~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----l~~~p~~~~~~l~la   78 (613)
                      |.+...+.+-++.|.+ |.++ ++|+..  +|+| ++|+.++|++++++++||..| ...+    +.|.|+. +..|.-+
T Consensus       183 ~~~~~~t~ed~~~i~~-l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-~rgdihVLL~G~PGt-KS~Lar~  257 (506)
T 3f8t_A          183 IPEVHPDPAELEEFRE-LADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-NSERLHVLLAGYPVV-CSEILHH  257 (506)
T ss_dssp             SCCCCCCHHHHHHHHH-HHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-GGGCCCEEEESCHHH-HHHHHHH
T ss_pred             cccCCCCHHHHHHHHH-HHHH-HHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-cCCceeEEEECCCCh-HHHHHHH
Confidence            3444566778888998 5566 899955  8999 999999999999999999877 3332    7899999 9888777


Q ss_pred             h-hh-hcceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccc
Q psy2640          79 M-HH-YIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQY  156 (613)
Q Consensus        79 ~-~~-~~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~  156 (613)
                      + |. .||++||+|++++.+|||++ .++++| |.++||+++|||+|+||+|||++|+.                     
T Consensus       258 i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~tG-~~~~~G~l~LAdgGvl~lDEIn~~~~---------------------  314 (506)
T 3f8t_A          258 VLDHLAPRGVYVDLRRTELTDLTAV-LKEDRG-WALRAGAAVLADGGILAVDHLEGAPE---------------------  314 (506)
T ss_dssp             HHHHTCSSEEEEEGGGCCHHHHSEE-EEESSS-EEEEECHHHHTTTSEEEEECCTTCCH---------------------
T ss_pred             HHHHhCCCeEEecCCCCCccCceEE-EEcCCC-cccCCCeeEEcCCCeeehHhhhhCCH---------------------
Confidence            6 64 69999999999999999999 888888 99999999999999999999999998                     


Q ss_pred             cccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccc
Q psy2640         157 TPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQAL  236 (613)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~l  236 (613)
                                           .++++|||+||||+|+|.  |+  ++|++|+|+||+||+. +|++.+++ +|++||+++
T Consensus       315 ---------------------~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~al  367 (506)
T 3f8t_A          315 ---------------------PHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQDF  367 (506)
T ss_dssp             ---------------------HHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGG-GGCCSCHHH
T ss_pred             ---------------------HHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccCCCCCc-cccCCChHH
Confidence                                 589999999999999998  77  9999999999999998 99998998 999999999


Q ss_pred             cccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHH
Q psy2640         237 LSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLH  316 (613)
Q Consensus       237 lsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLr  316 (613)
                      ||||||+|++.|.|+++.|..        .                                       ..+.++.+.|+
T Consensus       368 LDRFDLi~i~~d~pd~e~d~e--------~---------------------------------------~~~~ls~e~L~  400 (506)
T 3f8t_A          368 LSHFDLIAFLGVDPRPGEPEE--------Q---------------------------------------DTEVPSYTLLR  400 (506)
T ss_dssp             HTTCSEEEETTC-------------------------------------------------------------CCHHHHH
T ss_pred             hhheeeEEEecCCCChhHhhc--------c---------------------------------------cCCCCCHHHHH
Confidence            999999999999999877631        0                                       11247899999


Q ss_pred             HHHHHHh-hhcCCCcCChHHHHHHHHHHHHHHhccC-----CCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC--
Q psy2640         317 KYLAYAR-KYVSKPELSTEAALLLQEFYLNLRKHHH-----SVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC--  388 (613)
Q Consensus       317 kYI~~ar-~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~-----~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~--  388 (613)
                      +||+||| .++ +|.+++++.++|.++|..+|+...     ....+++|+|++++|+|+|+|+ |+++++++|+++|+  
T Consensus       401 ~yi~~ar~~~~-~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~-A~L~gR~~V~~eDV~~  478 (506)
T 3f8t_A          401 RYLLYAIREHP-APELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAH-ARMRLSDDVEPEDVDI  478 (506)
T ss_dssp             HHHHHHHHHCS-CCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHH-HHHTTCSEECHHHHHH
T ss_pred             HHHHHHHhcCC-CceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHH-HHHcCcCCCCHHHHHH
Confidence            9999999 678 999999999999999999998321     1246789999999999999999 99999999999999  


Q ss_pred             -CccchhhHHHHHHHHhhhCCcccCCCCCCCcce
Q psy2640         389 -PSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHV  421 (613)
Q Consensus       389 -~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idi  421 (613)
                       ..++..++.+.++           ||.+|.||+
T Consensus       479 Ai~L~~~Sl~~~a~-----------dp~tg~id~  501 (506)
T 3f8t_A          479 AAELVDWYLETAMQ-----------IPGGDEIRI  501 (506)
T ss_dssp             HHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHHHHHHhcC-----------CCCCCeEeE
Confidence             6677777776633           566778888
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 613
d1g8pa_ 333 c.37.1.20 (A:) ATPase subunit of magnesium chelata 1e-04
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 8/49 (16%)

Query: 389 PSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHA 437
            +I G E +K  LLL             G   VL+ GD G GKS  + A
Sbjct: 7   SAIVGQEDMKLALLLTAV--------DPGIGGVLVFGDRGTGKSTAVRA 47

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query613
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 99.86
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 98.25
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 91.4
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 81.4
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.86  E-value=1.6e-22  Score=210.03  Aligned_cols=265  Identities=17%  Similarity=0.124  Sum_probs=192.5

Q ss_pred             cchHHhhhccchhhhHHHHhhhhhc--ccchhhhhhhccCCchhhhhHHHHhhhhh------------------------
Q psy2640          29 YNVAEIEERRCYLVDIKVLMNDQIF--NDQWKTFLQNLSNEPQHTINCLGLAMHHY------------------------   82 (613)
Q Consensus        29 Yd~~~I~~~~~~~~dvK~~i~~qlf--gg~~k~~~~~l~~~p~~~~~~l~la~~~~------------------------   82 (613)
                      ||..+|    .|.+.+|+++....+  ||..  +  -+.|.|+..+..|.-++...                        
T Consensus         4 ~~f~~I----~Gq~~~kral~laa~~~~~h~--v--Ll~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~   75 (333)
T d1g8pa_           4 FPFSAI----VGQEDMKLALLLTAVDPGIGG--V--LVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWA   75 (333)
T ss_dssp             CCGGGS----CSCHHHHHHHHHHHHCGGGCC--E--EEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTC
T ss_pred             CChhhc----cCcHHHHHHHHHHHhccCCCe--E--EEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchh
Confidence            555554    577889998887776  3321  1  25799999998776544321                        


Q ss_pred             ----------cceEEEecccccccCceEEEEeeC---CCCeeecCceeecccCceeccccccCCCcccccccchhccccc
Q psy2640          83 ----------IISVYVCGNTSTTSGLTVTLSREG---GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMR  149 (613)
Q Consensus        83 ----------~r~~~~~g~~~s~~gLta~~~~~~---~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~  149 (613)
                                |+..+....++|..+|++.+....   +|+|++++|++++||+||+||||+++++.              
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~--------------  141 (333)
T d1g8pa_          76 TVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--------------  141 (333)
T ss_dssp             CCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH--------------
T ss_pred             hccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHH--------------
Confidence                      344566677888888887765544   58999999999999999999999999998              


Q ss_pred             ccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhh
Q psy2640         150 GITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAEN  229 (613)
Q Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~  229 (613)
                                                  ..+++|+++||+++++|+++|...++|++|.++|++||+.+           
T Consensus       142 ----------------------------~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~-----------  182 (333)
T d1g8pa_         142 ----------------------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG-----------  182 (333)
T ss_dssp             ----------------------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-----------
T ss_pred             ----------------------------HHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCcccc-----------
Confidence                                        58899999999999999999999999999999999999864           


Q ss_pred             ccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCC
Q psy2640         230 LRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPL  309 (613)
Q Consensus       230 i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~  309 (613)
                       .+++++++|||+.+.+.+..+......+..+........                       ........         
T Consensus       183 -~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~---------  229 (333)
T d1g8pa_         183 -DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADP-----------------------KAFLEEWR---------  229 (333)
T ss_dssp             -CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCH-----------------------HHHHHHHH---------
T ss_pred             -ccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccCh-----------------------HHHHHHHH---------
Confidence             388999999998887776666555444443332221000                       00000000         


Q ss_pred             CCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCC
Q psy2640         310 IPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCP  389 (613)
Q Consensus       310 i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~  389 (613)
                      -....++..+..+++.+.+..+++++...+...+..++.         .++|....++|+|+++ |.++.++.|+.+|+.
T Consensus       230 ~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~---------~S~R~~~~llrvArti-A~L~gr~~V~~~di~  299 (333)
T d1g8pa_         230 PKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS---------DGLRGELTLLRSARAL-AALEGATAVGRDHLK  299 (333)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS---------CSHHHHHHHHHHHHHH-HHHTTCSBCCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHHHcCC---------CChHHHHHHHHHHHHH-HHHcCCCCCCHHHHH
Confidence            001223444444444443568888888888888777653         3789999999999999 999999999999985


Q ss_pred             c----cchhhHH
Q psy2640         390 S----IFGHEMV  397 (613)
Q Consensus       390 ~----I~~~~~~  397 (613)
                      +    ++.|...
T Consensus       300 ~a~~lvL~hR~~  311 (333)
T d1g8pa_         300 RVATMALSHRLR  311 (333)
T ss_dssp             HHHHHHHGGGCC
T ss_pred             HHHHHHHHhhcc
Confidence            5    4455443
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure