Psyllid ID: psy2647

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
misniwhgekphkcqvcgkafsqssnlithsrkhtgfkpfacdlcgrAFQRKVDLrrhketqhtemrpvpvt
Flexible Loop (DISEMBL)
misniwhgekphkcqvCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLrrhketqhtemrpvpvt
Low Complexity Region (SEG)
MISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT
Disordered region (IsUnstruct)
*****WHG**PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKV*******************
Disordered Region (DISOPRED)
MISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV*
Disordered Region (DISEMBL)
MISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH**************
Disordered Region (DISPRO)
**SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPV*V*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q07120	423	Zinc finger protein Gfi-1	yes	N/A	0.805	0.137	0.898	6e-26
P70338	423	Zinc finger protein Gfi-1	yes	N/A	0.805	0.137	0.898	8e-26
Q99684	422	Zinc finger protein Gfi-1	yes	N/A	0.805	0.137	0.898	9e-26
Q5DWN0	422	Zinc finger protein Gfi-1	yes	N/A	0.805	0.137	0.898	1e-25
O42409	337	Zinc finger protein Gfi-1	no	N/A	0.819	0.175	0.85	7e-25
Q6DCW1	343	Zinc finger protein Gfi-1	N/A	N/A	0.805	0.169	0.864	3e-24
O70237	330	Zinc finger protein Gfi-1	no	N/A	0.805	0.175	0.847	3e-24
Q5VTD9	330	Zinc finger protein Gfi-1	no	N/A	0.805	0.175	0.847	5e-24
Q9N658	541	Zinc finger protein sens	no	N/A	0.902	0.120	0.738	1e-22
Q5R5N5	582	Myoneurin OS=Pongo abelii	no	N/A	0.861	0.106	0.523	9e-14

>sp|Q07120|GFI1_RAT Zinc finger protein Gfi-1 OS=Rattus norvegicus GN=Gfi1 PE=1 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 55/59 (93%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct: 362 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 420

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter region. Implicated in the maintenance of inner ear hair cells.
Rattus norvegicus (taxid: 10116)

>sp|P70338|GFI1_MOUSE Zinc finger protein Gfi-1 OS=Mus musculus GN=Gfi1 PE=1 SV=2

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 55/59 (93%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct: 362 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 420

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Mus musculus (taxid: 10090)

>sp|Q99684|GFI1_HUMAN Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 55/59 (93%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct: 361 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 419

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Homo sapiens (taxid: 9606)

>sp|Q5DWN0|GFI1_CANFA Zinc finger protein Gfi-1 OS=Canis familiaris GN=GFI1 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 55/59 (93%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct: 361 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 419

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Canis familiaris (taxid: 9615)

>sp|O42409|GFI1B_CHICK Zinc finger protein Gfi-1b OS=Gallus gallus GN=GFI1B PE=2 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 56/60 (93%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF+C+LC + FQRKVDLRRH+ETQH+
Sbjct: 276 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCAKGFQRKVDLRRHRETQHS 335

Essential transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.

Gallus gallus (taxid: 9031)

>sp|Q6DCW1|GFI1B_XENLA Zinc finger protein Gfi-1b OS=Xenopus laevis GN=gfi1b PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 54/59 (91%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF+CDLC + FQRKVDLRRH+E QH
Sbjct: 282 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCDLCCKGFQRKVDLRRHRENQH 340

Essential transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.

Xenopus laevis (taxid: 8355)

>sp|O70237|GFI1B_MOUSE Zinc finger protein Gfi-1b OS=Mus musculus GN=Gfi1b PE=1 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF+C+LC + FQRKVDLRRH+E+QH
Sbjct: 269 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQH 327

Essential proto-oncogenic transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Component of a RCOR-GFI-KDM1A-HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development and controls hematopoietic differentiation. Transcriptional repressor or activator depending on both promoter and cell type context; represses promoter activity of SOCS1 and SOCS3 and thus, may regulate cytokine signaling pathways. Cooperates with GATA1 to repress target gene transcription, such as the apoptosis regulator BCL2L1; GFI1B silencing in leukemic cell lines markedly increase apoptosis rate. Inhibits down-regulation of MYC and MYB as well as the cyclin-dependent kinase inhibitor CDKN1A/P21WAF1 in IL6-treated myelomonocytic cells. Represses expression of GATA3 in T-cell lymphomas and inhibits GATA1-mediated transcription; as GATA1 also mediates erythroid GFI1B transcription, both GATA1 and GFI1B participate in a feedback regulatory pathway controlling the expression of GFI1B gene in erythroid cells. Suppresses GATA1-mediated stimulation of GFI1B promoter through protein interaction. Binds to gamma-satellite DNA and to its own promoter, auto-repressing its own expression. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.

Mus musculus (taxid: 10090)

>sp|Q5VTD9|GFI1B_HUMAN Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF+C+LC + FQRKVDLRRH+E+QH
Sbjct: 269 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQH 327

Essential proto-oncogenic transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Component of a RCOR-GFI-KDM1A-HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development and controls hematopoietic differentiation. Transcriptional repressor or activator depending on both promoter and cell type context; represses promoter activity of SOCS1 and SOCS3 and thus, may regulate cytokine signaling pathways. Cooperates with GATA1 to repress target gene transcription, such as the apoptosis regulator BCL2L1; GFI1B silencing in leukemic cell lines markedly increase apoptosis rate. Inhibits down-regulation of MYC and MYB as well as the cyclin-dependent kinase inhibitor CDKN1A/P21WAF1 in IL6-treated myelomonocytic cells. Represses expression of GATA3 in T-cell lymphomas and inhibits GATA1-mediated transcription; as GATA1 also mediates erythroid GFI1B transcription, both GATA1 and GFI1B participate in a feedback regulatory pathway controlling the expression of GFI1B gene in erythroid cells. Suppresses GATA1-mediated stimulation of GFI1B promoter through protein interaction. Binds to gamma-satellite DNA and to its own promoter, auto-repressing its own expression. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.

Homo sapiens (taxid: 9606)

>sp|Q9N658|GFI1_DROME Zinc finger protein sens OS=Drosophila melanogaster GN=sens PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 54/65 (83%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKC VC KAFSQSSNLITH RKHTG+KPF C LC ++FQRKVDLRRH+E++H 
Sbjct: 462 IHTGEKPHKCTVCLKAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRESRHE 521

Query: 65  EMRPV 69
           E  PV
Sbjct: 522 EAPPV 526

Transcription factor both necessary and sufficient for proper development of most cell types of the embryonic and adult peripheral nervous system (PNS). Essential component of the proneural Notch signaling pathway required for proper sensory organ precursor (SOP) differentiation. Correct expression requires expression of scalloped (sd). Repression of rough (ro) in R8 photoreceptor is an essential mechanism of R8 cell fate determination.

Drosophila melanogaster (taxid: 7227)

>sp|Q5R5N5|MYNN_PONAB Myoneurin OS=Pongo abelii GN=MYNN PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
           GEKP+ C  CGKAF+ SS+LITHSRKHTG +PF C+LCG ++    +L++HK   H+   
Sbjct: 439 GEKPYVCDTCGKAFAVSSSLITHSRKHTGERPFICELCGNSYTDIKNLKKHKTKVHSGAD 498

Query: 68  PVP 70
             P
Sbjct: 499 KTP 501

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
242011164	453	growth factor independence, putative [Pe	0.902	0.143	0.939	8e-30
270015617	435	growth factor independent 1 transcriptio	0.888	0.147	0.923	1e-28
189242238	422	PREDICTED: similar to senseless-2 CG3163	0.888	0.151	0.923	1e-28
328706489	687	PREDICTED: hypothetical protein LOC10016	0.930	0.097	0.867	2e-27
241751462	68	zinc finger protein, putative [Ixodes sc	0.861	0.911	0.903	8e-27
345483329	486	PREDICTED: zinc finger protein 92-like [	0.847	0.125	0.887	4e-26
328779596	462	PREDICTED: zinc finger protein 62-like [	0.847	0.132	0.887	5e-26
383857867	464	PREDICTED: zinc finger protein 324A-like	0.944	0.146	0.805	6e-26
340723439	463	PREDICTED: zinc finger protein 398-like	0.847	0.131	0.887	6e-26
350427115	496	PREDICTED: zinc finger protein 398-like	0.847	0.122	0.887	6e-26

>gi|242011164|ref|XP_002426325.1| growth factor independence, putative [Pediculus humanus corporis] gi|212510402|gb|EEB13587.1| growth factor independence, putative [Pediculus humanus corporis]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/66 (93%), Positives = 63/66 (95%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 
Sbjct: 388 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHA 447

Query: 65  EMRPVP 70
           E+RPVP
Sbjct: 448 ELRPVP 453

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015617|gb|EFA12065.1| growth factor independent 1 transcription repressor [Tribolium castaneum]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/65 (92%), Positives = 62/65 (95%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKC VCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT
Sbjct: 369 IHTGEKPHKCTVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 428

Query: 65  EMRPV 69
           E+RP+
Sbjct: 429 ELRPI 433

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189242238|ref|XP_001810967.1| PREDICTED: similar to senseless-2 CG31632-PA [Tribolium castaneum]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/65 (92%), Positives = 62/65 (95%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKC VCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT
Sbjct: 356 IHTGEKPHKCTVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 415

Query: 65  EMRPV 69
           E+RP+
Sbjct: 416 ELRPI 420

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328706489|ref|XP_001952327.2| PREDICTED: hypothetical protein LOC100160519 [Acyrthosiphon pisum]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 62/68 (91%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTG+KPFACDLCGRAFQRKVDLRRHKETQHT
Sbjct: 620 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGYKPFACDLCGRAFQRKVDLRRHKETQHT 679

Query: 65  EMRPVPVT 72
           + R   +T
Sbjct: 680 DFRSGSLT 687

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241751462|ref|XP_002406050.1| zinc finger protein, putative [Ixodes scapularis] gi|215506027|gb|EEC15521.1| zinc finger protein, putative [Ixodes scapularis]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
          GEKPHKC VCGKAFSQSSNLITHSRKHTGFKPFACD+CGRAFQRKVDLRRHKETQH ++R
Sbjct: 7  GEKPHKCAVCGKAFSQSSNLITHSRKHTGFKPFACDVCGRAFQRKVDLRRHKETQHADIR 66

Query: 68 PV 69
          P+
Sbjct: 67 PI 68

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483329|ref|XP_001603065.2| PREDICTED: zinc finger protein 92-like [Nasonia vitripennis]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 59/62 (95%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC+LCGRAFQRKVDLRRH+ETQH 
Sbjct: 385 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACELCGRAFQRKVDLRRHRETQHA 444

Query: 65  EM 66
           ++
Sbjct: 445 DL 446

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779596|ref|XP_003249677.1| PREDICTED: zinc finger protein 62-like [Apis mellifera]

 Score =  121 bits (303), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 59/62 (95%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC+LCGRAFQRKVDLRRH+ETQH 
Sbjct: 375 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACELCGRAFQRKVDLRRHRETQHA 434

Query: 65  EM 66
           ++
Sbjct: 435 DL 436

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857867|ref|XP_003704425.1| PREDICTED: zinc finger protein 324A-like [Megachile rotundata]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 63/72 (87%), Gaps = 4/72 (5%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC+LCGRAFQRKVDLRRH+ETQH 
Sbjct: 376 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACELCGRAFQRKVDLRRHRETQHA 435

Query: 65  EM----RPVPVT 72
           ++    RP  +T
Sbjct: 436 DLNASQRPAGLT 447

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723439|ref|XP_003400097.1| PREDICTED: zinc finger protein 398-like [Bombus terrestris]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 59/62 (95%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC+LCGRAFQRKVDLRRH+ETQH 
Sbjct: 376 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACELCGRAFQRKVDLRRHRETQHA 435

Query: 65  EM 66
           ++
Sbjct: 436 DL 437

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350427115|ref|XP_003494657.1| PREDICTED: zinc finger protein 398-like [Bombus impatiens]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 59/62 (95%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           I  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC+LCGRAFQRKVDLRRH+ETQH 
Sbjct: 409 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACELCGRAFQRKVDLRRHRETQHA 468

Query: 65  EM 66
           ++
Sbjct: 469 DL 470

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
ZFIN|ZDB-GENE-040116-8	396	gfi1ab "growth factor independ	0.777	0.141	0.946	7.3e-27
ZFIN|ZDB-GENE-050522-534	385	gfi1aa "growth factor independ	0.777	0.145	0.946	7.3e-27
UNIPROTKB|F1NC19	402	GFI1 "Uncharacterized protein"	0.777	0.139	0.928	1.5e-26
UNIPROTKB|F1MPJ9	420	GFI1 "Uncharacterized protein"	0.777	0.133	0.928	1.5e-26
UNIPROTKB|F1S4G0	374	GFI1 "Uncharacterized protein"	0.777	0.149	0.928	1.5e-26
UNIPROTKB|Q5DWN0	422	GFI1 "Zinc finger protein Gfi-	0.777	0.132	0.928	1.5e-26
UNIPROTKB|Q99684	422	GFI1 "Zinc finger protein Gfi-	0.777	0.132	0.928	1.5e-26
MGI|MGI:103170	423	Gfi1 "growth factor independen	0.777	0.132	0.928	1.5e-26
RGD|2680	423	Gfi1 "growth factor independen	0.777	0.132	0.928	1.5e-26
UNIPROTKB|Q07120	423	Gfi1 "Zinc finger protein Gfi-	0.777	0.132	0.928	1.5e-26

ZFIN|ZDB-GENE-040116-8 gfi1ab "growth factor independent 1ab" [Danio rerio (taxid:7955)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 53/56 (94%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRHKETQH
Sbjct:   338 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHKETQH 393

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEP

ZFIN|ZDB-GENE-050522-534 gfi1aa "growth factor independent 1aa" [Danio rerio (taxid:7955)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 53/56 (94%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRHKETQH
Sbjct:   327 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHKETQH 382

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0060215 "primitive hemopoiesis" evidence=IMP

GO:0030218 "erythrocyte differentiation" evidence=IMP

UNIPROTKB|F1NC19 GFI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct:   344 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 399

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

UNIPROTKB|F1MPJ9 GFI1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct:   362 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 417

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1S4G0 GFI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct:   316 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 371

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5DWN0 GFI1 "Zinc finger protein Gfi-1" [Canis lupus familiaris (taxid:9615)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct:   364 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 419

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q99684 GFI1 "Zinc finger protein Gfi-1" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct:   364 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 419

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0016604 "nuclear body" evidence=IDA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0016032 "viral reproduction" evidence=TAS

GO:0000083 "regulation of transcription involved in G1/S phase of mitotic cell cycle" evidence=TAS

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IDA

GO:0010957 "negative regulation of vitamin D biosynthetic process" evidence=IC

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

MGI|MGI:103170 Gfi1 "growth factor independent 1" [Mus musculus (taxid:10090)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct:   365 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 420

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IMP

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=ISO

GO:0010977 "negative regulation of neuron projection development" evidence=ISO

GO:0016363 "nuclear matrix" evidence=ISO

GO:0016604 "nuclear body" evidence=ISO

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IMP

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=ISO

GO:0042472 "inner ear morphogenesis" evidence=IMP

GO:0042491 "auditory receptor cell differentiation" evidence=IMP

GO:0042660 "positive regulation of cell fate specification" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045165 "cell fate commitment" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=ISO

RGD|2680 Gfi1 "growth factor independent 1 transcription repressor" [Rattus norvegicus (taxid:10116)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct:   365 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 420

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA;ISO

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IEA;ISO

GO:0010977 "negative regulation of neuron projection development" evidence=ISO;ISS

GO:0016363 "nuclear matrix" evidence=IEA;ISO

GO:0016604 "nuclear body" evidence=IEA;ISO

GO:0017053 "transcriptional repressor complex" evidence=ISO;ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA;ISO

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IEA;ISO

GO:0042472 "inner ear morphogenesis" evidence=IEA;ISO

GO:0042491 "auditory receptor cell differentiation" evidence=IEA;ISO

GO:0042660 "positive regulation of cell fate specification" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045165 "cell fate commitment" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IEA;ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA;ISO

UNIPROTKB|Q07120 Gfi1 "Zinc finger protein Gfi-1" [Rattus norvegicus (taxid:10116)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query:     8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
             GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF CDLCG+ FQRKVDLRRH+ETQH
Sbjct:   365 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 420

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99684	GFI1_HUMAN	No assigned EC number	0.8983	0.8055	0.1374	yes	N/A
Q5DWN0	GFI1_CANFA	No assigned EC number	0.8983	0.8055	0.1374	yes	N/A
P70338	GFI1_MOUSE	No assigned EC number	0.8983	0.8055	0.1371	yes	N/A
Q07120	GFI1_RAT	No assigned EC number	0.8983	0.8055	0.1371	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	0.002
COG5048	467	COG5048, COG5048, FOG: Zn-finger [General function	0.003

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 32.0 bits (73), Expect = 0.002
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 26 NLITHSRKHTGFKPFACDLCGRAF 49
          NL  H R HTG KP+ C +CG++F
Sbjct: 1  NLRRHMRTHTGEKPYKCPVCGKSF 24

Length = 26

>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction only]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +P  C  C  +FS+  +L  H R HTG KP  C   G         R  + ++H     
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFS---RPLELSRHLRTHH 87

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG2462|consensus	279		99.87
KOG2462|consensus	279		99.76
KOG3623|consensus	1007		99.65
KOG3623|consensus	1007		99.61
KOG3576|consensus	267		99.43
KOG3576|consensus	267		99.36
PHA02768	55	hypothetical protein; Provisional	99.34
KOG1074|consensus	958		99.34
PHA00733	128	hypothetical protein	99.25
KOG1074|consensus	958		99.18
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.14
KOG3608|consensus	467		99.08
PHA00616	44	hypothetical protein	99.03
PHA02768	55	hypothetical protein; Provisional	98.82
PHA00616	44	hypothetical protein	98.81
KOG3608|consensus	467		98.75
PHA00732	79	hypothetical protein	98.68
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.64
PLN03086	567	PRLI-interacting factor K; Provisional	98.61
PHA00733	128	hypothetical protein	98.54
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.54
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.51
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.44
KOG3993|consensus	500		98.41
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.39
PLN03086	567	PRLI-interacting factor K; Provisional	98.37
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.29
KOG3993|consensus	500		98.29
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.03
smart00355	26	ZnF_C2H2 zinc finger.	97.93
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.91
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.85
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.8
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.78
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.77
PHA00732	79	hypothetical protein	97.72
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.7
PRK04860	160	hypothetical protein; Provisional	97.69
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.37
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.87
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.85
KOG2893|consensus	341		96.6
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.53
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.11
PRK04860	160	hypothetical protein; Provisional	95.58
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.55
COG5048	467	FOG: Zn-finger [General function prediction only]	95.36
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	95.21
COG4049	65	Uncharacterized protein containing archaeal-type C	95.16
KOG1146|consensus	1406		95.06
COG1592	166	Rubrerythrin [Energy production and conversion]	93.59
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	93.36
KOG2186|consensus	276		93.0
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	92.97
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	92.97
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.61
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	92.39
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.12
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	92.03
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	91.89
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	91.33
PRK06266	178	transcription initiation factor E subunit alpha; V	91.06
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	91.01
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	90.87
COG5189	423	SFP1 Putative transcriptional repressor regulating	90.64
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	90.13
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	90.1
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	90.07
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	90.0
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	89.84
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	89.77
PF13451	49	zf-trcl: Probable zinc-binding domain	89.68
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	89.61
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	89.16
smart00531	147	TFIIE Transcription initiation factor IIE.	88.71
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	88.32
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	87.97
KOG2893|consensus	341		87.09
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	86.02
COG3357	97	Predicted transcriptional regulator containing an	85.65
PF12907	40	zf-met2: Zinc-binding	85.44
COG5048	467	FOG: Zn-finger [General function prediction only]	83.12
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	82.09
PHA00626	59	hypothetical protein	81.14
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	80.56
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	80.45
KOG4167|consensus	907		80.17

>KOG2462|consensus

Probab=99.87  E-value=6.7e-23  Score=101.56  Aligned_cols=64  Identities=42%  Similarity=0.819  Sum_probs=59.7

Q ss_pred             CCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         8 ~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ..-++.|..||+.|...+.|+.|+++|+|++||.|+.|++.|.++++|..|+++ |++.++|.|.
T Consensus       184 H~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQT-HS~~K~~qC~  247 (279)
T KOG2462|consen  184 HTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQT-HSDVKKHQCP  247 (279)
T ss_pred             cCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHh-hcCCccccCc
Confidence            345789999999999999999999999999999999999999999999999999 8888899873

>KOG2462|consensus

Probab=99.76  E-value=5e-19  Score=88.04  Aligned_cols=60  Identities=40%  Similarity=0.747  Sum_probs=56.6

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      +-++|+|+|||.|..|++.|..+.+|..|+.+|.+.++|+|..|++.|...+.|..|...
T Consensus       206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            357899999999999999999999999999999999999999999999999999999764

>KOG3623|consensus

Probab=99.65  E-value=7.8e-17  Score=88.87  Aligned_cols=63  Identities=33%  Similarity=0.720  Sum_probs=51.3

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +.+|.|+.|++.|.-...|.+|.-.|+|.+||+|.+|.+.|..+..|..|+|+ |+|++||-|+
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRL-HSGEKPfQCd  954 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRL-HSGEKPFQCD  954 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhh-ccCCCcchhh
Confidence            45688888888888888888888888888888888888888888888888888 8888888774

>KOG3623|consensus

Probab=99.61  E-value=2.5e-16  Score=86.96  Aligned_cols=62  Identities=32%  Similarity=0.680  Sum_probs=56.8

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      ..-|+|.+||.|.+|.+.|+.+-+|..|++.|.|++||+|.+|+++|+...+..+|+....+
T Consensus       914 KYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMNHRYS  975 (1007)
T KOG3623|consen  914 KYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMNHRYS  975 (1007)
T ss_pred             hhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhccchh
Confidence            34589999999999999999999999999999999999999999999999999999874333

>KOG3576|consensus

Probab=99.43  E-value=1.7e-14  Score=69.90  Aligned_cols=52  Identities=40%  Similarity=0.925  Sum_probs=26.9

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHH
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      .+.+.|..|+++|.....|++|+++|+|-+||+|..|++.|.++-+|..|++
T Consensus       143 vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  143 VKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             HHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            3444455555555555555555555555555555555555555555555544

>KOG3576|consensus

Probab=99.36  E-value=6.6e-14  Score=67.92  Aligned_cols=63  Identities=37%  Similarity=0.772  Sum_probs=58.2

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ...+.|..|++.|.....|.+|++.|..-+.+.|..||+.|...-.|++|.++ |++-+||.|+
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rt-htgvrpykc~  177 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRT-HTGVRPYKCS  177 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhcc-ccCccccchh
Confidence            45688999999999999999999999888889999999999999999999999 9999999985

>PHA02768 hypothetical protein; Provisional

Probab=99.34  E-value=3.3e-13  Score=53.19  Aligned_cols=44  Identities=27%  Similarity=0.546  Sum_probs=39.0

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHH
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLR   56 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~   56 (72)
                      -|.|+.|++.|....+|..|++.|+  ++++|..|++.|...+.|+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            3789999999999999999999998  6899999999998776653

>KOG1074|consensus

Probab=99.34  E-value=1.4e-13  Score=77.06  Aligned_cols=56  Identities=43%  Similarity=0.851  Sum_probs=51.0

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      +++|..|.+.|.+...|+.|.++|+|++||+|.+||..|..+.+|+.|... |.+..
T Consensus       353 khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~r-H~e~~  408 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQR-HREKY  408 (958)
T ss_pred             cchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeee-ccccC
Confidence            467999999999999999999999999999999999999999999999887 44443

>PHA00733 hypothetical protein

Probab=99.25  E-value=2.3e-11  Score=55.93  Aligned_cols=56  Identities=27%  Similarity=0.485  Sum_probs=48.8

Q ss_pred             cCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647           7 HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus         7 ~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      .+.++|.|..|++.|.....|..|++.+  ..++.|..|++.|.....|..|+...|.
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            3478999999999999999999998865  3579999999999999999999887665

>KOG1074|consensus

Probab=99.18  E-value=8.1e-12  Score=70.31  Aligned_cols=58  Identities=41%  Similarity=0.843  Sum_probs=48.1

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPV   69 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~   69 (72)
                      |..|-.|.+...-...|+.|.++|+|++||+|.+||+.|..+.+|+.|+.+ |...-|+
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~v-Hka~p~~  662 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSV-HKAKPPA  662 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccc-cccCccc
Confidence            567888888888888888898899999999999999999988888888887 5555444

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.14  E-value=3.6e-11  Score=41.09  Aligned_cols=25  Identities=52%  Similarity=1.081  Sum_probs=22.5

Q ss_pred             HHHHhHHHhcCCCCccCCcchhhcC
Q psy2647          26 NLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus        26 ~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      +|..|++.|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4788999999999999999999886

...

>KOG3608|consensus

Probab=99.08  E-value=1e-10  Score=61.07  Aligned_cols=62  Identities=23%  Similarity=0.486  Sum_probs=45.7

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .++|.|..|.+.|..+..|..|+..|..  .|+|+.|..+....+.|..|++..|..++|++|+
T Consensus       235 ~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd  296 (467)
T KOG3608|consen  235 TNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCD  296 (467)
T ss_pred             CCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCcccc
Confidence            3456666677777666667666666643  4778888888888888888888888888888875

>PHA00616 hypothetical protein

Probab=99.03  E-value=2.2e-10  Score=43.30  Aligned_cols=31  Identities=19%  Similarity=0.446  Sum_probs=16.6

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhccCCCCCC
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQHTEMRPVP   70 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~   70 (72)
                      ||+|..||+.|.+.+.+..|++. +.++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~-~hg~~~~~   31 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS-VHKQNKLT   31 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH-hcCCCccc
Confidence            35555566666655666666555 33334443

>PHA02768 hypothetical protein; Provisional

Probab=98.82  E-value=4.6e-09  Score=41.52  Aligned_cols=25  Identities=16%  Similarity=0.656  Sum_probs=23.1

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhc
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      .|+|+.||+.|...+.|..|+++|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC
Confidence            4799999999999999999999955

>PHA00616 hypothetical protein

Probab=98.81  E-value=3.5e-09  Score=40.05  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      ||.|..||..|.....+..|++.+++++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6889999999999999999999999999988764

>KOG3608|consensus

Probab=98.75  E-value=2.4e-08  Score=52.54  Aligned_cols=51  Identities=39%  Similarity=0.675  Sum_probs=31.9

Q ss_pred             cccCcccchhccCcHHHHHhHHH-hcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRK-HTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~-~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      .|.|+.|+........|..|++. |...+|++|..|.+.+...+.|+.|..+
T Consensus       263 ~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~  314 (467)
T KOG3608|consen  263 CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQV  314 (467)
T ss_pred             cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHh
Confidence            45666666666666666666654 5555666666666666666666666665

>PHA00732 hypothetical protein

Probab=98.68  E-value=1.4e-08  Score=43.25  Aligned_cols=45  Identities=31%  Similarity=0.659  Sum_probs=37.0

Q ss_pred             cccCcccchhccCcHHHHHhHHH-hcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRK-HTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~-~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ||.|..|++.|.....|..|++. |.   ++.|+.|++.|..   +..|.+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~~---l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYRR---LNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeCC---hhhhhcc
Confidence            57899999999999999999984 54   3589999999973   5667654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.64  E-value=1.4e-07  Score=37.42  Aligned_cols=51  Identities=31%  Similarity=0.605  Sum_probs=38.9

Q ss_pred             cccCcccchhccCcHHHHHhHHH-hcC-CCCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRK-HTG-FKPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~-~~~-~~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      .|.|+.|++ ..+...|..|... |.. .+.+.|+.|...+.  .+|..|+..+|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            478999999 4567889999775 544 35789999998644  488899887653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.61  E-value=8.9e-08  Score=53.15  Aligned_cols=57  Identities=23%  Similarity=0.630  Sum_probs=37.4

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ++++.|..|+..|. ...+..|+..++  .++.|+ |+..+ .+..|..|+.+ +..++|+.|
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~t-hCp~Kpi~C  507 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQAS-TCPLRLITC  507 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhc-cCCCCceeC
Confidence            45567777777774 456777776653  567777 77544 45677777766 666677666

>PHA00733 hypothetical protein

Probab=98.54  E-value=7.5e-08  Score=44.48  Aligned_cols=54  Identities=20%  Similarity=0.292  Sum_probs=41.8

Q ss_pred             CCCcccCcccchhccCcHHHHHh--HH---HhcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647           8 GEKPHKCQVCGKAFSQSSNLITH--SR---KHTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus         8 ~~~~~~c~~c~~~~~~~~~l~~~--~~---~~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ..+++.|..|...+.....+..+  ..   ...+.+||.|..|++.|.....|..|++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~   95 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRY   95 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhc
Confidence            35678899998887776665554  11   22346799999999999999999999986

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.54  E-value=6.3e-08  Score=31.87  Aligned_cols=22  Identities=36%  Similarity=1.026  Sum_probs=16.1

Q ss_pred             ccCCcchhhcCChHHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |+|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4677777777777777777765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.51  E-value=1.3e-08  Score=34.62  Aligned_cols=21  Identities=52%  Similarity=0.933  Sum_probs=18.5

Q ss_pred             ccccccCCCcccCcccchhcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFS   22 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~   22 (72)
                      ++++|++++||.|+.|++.|.
T Consensus         5 H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    5 HMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHSSSSSEEESSSSEEES
T ss_pred             HhhhcCCCCCCCCCCCcCeeC
Confidence            456899999999999999885

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.44  E-value=2.2e-07  Score=30.61  Aligned_cols=24  Identities=46%  Similarity=1.115  Sum_probs=16.4

Q ss_pred             ccCCcchhhcCChHHHHHHHHHhc
Q psy2647          40 FACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      |.|+.|++.|.....+..|+..+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            467788888888888888877643

...

>KOG3993|consensus

Probab=98.41  E-value=2e-07  Score=50.04  Aligned_cols=54  Identities=37%  Similarity=0.732  Sum_probs=35.6

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcC--------CC-------------------------CccCCcchhhcCChHHHHH
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTG--------FK-------------------------PFACDLCGRAFQRKVDLRR   57 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~--------~~-------------------------~~~c~~c~~~~~~~~~l~~   57 (72)
                      -|.|.+|++.|.-..+|..|.++|-.        ..                         .|.|..|++.|.....|..
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrK  374 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRK  374 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHH
Confidence            36777777777777777777765521        11                         2567777777777777777


Q ss_pred             HHHHhcc
Q psy2647          58 HKETQHT   64 (72)
Q Consensus        58 H~~~~~~   64 (72)
                      |+-+|+.
T Consensus       375 Hqlthq~  381 (500)
T KOG3993|consen  375 HQLTHQR  381 (500)
T ss_pred             hHHhhhc
Confidence            7666543

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.39  E-value=1.2e-07  Score=32.35  Aligned_cols=24  Identities=46%  Similarity=1.032  Sum_probs=17.2

Q ss_pred             CccCCcchhhcCChHHHHHHHHHh
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      +++|..|++.|.....|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            466777777777777777777654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.37  E-value=5.2e-07  Score=50.28  Aligned_cols=58  Identities=21%  Similarity=0.588  Sum_probs=46.8

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCC----------hHHHHHHHHHhccCCCCCCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQR----------KVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~----------~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +++.|+ |+..+ ....|..|+..+.+.+++.|..|+..+..          .+.|..|...  .+.+++.|
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~--CG~rt~~C  544 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI--CGSRTAPC  544 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh--cCCcceEc
Confidence            678898 99655 56889999988999999999999988842          3578889886  47777776

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.29  E-value=4.7e-07  Score=29.71  Aligned_cols=23  Identities=57%  Similarity=1.057  Sum_probs=20.6

Q ss_pred             ccCcccchhccCcHHHHHhHHHh
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKH   34 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~   34 (72)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            57999999999999999998763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG3993|consensus

Probab=98.29  E-value=9.8e-08  Score=51.18  Aligned_cols=52  Identities=19%  Similarity=0.454  Sum_probs=45.5

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHh
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      -|.|..|...|.....|.+|.-.......|+|+.|++.|+...+|..|+|.|
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWH  318 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWH  318 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhccc
Confidence            4889999999999999999876555556799999999999999999999984

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.03  E-value=1.6e-06  Score=45.34  Aligned_cols=52  Identities=29%  Similarity=0.680  Sum_probs=42.6

Q ss_pred             CCcccCcc--cchhccCcHHHHHhHHHhc-------------------CCCCccCCcchhhcCChHHHHHHHH
Q psy2647           9 EKPHKCQV--CGKAFSQSSNLITHSRKHT-------------------GFKPFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus         9 ~~~~~c~~--c~~~~~~~~~l~~~~~~~~-------------------~~~~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      ++||.|+.  |.+.|+....|+-|+....                   ..+||+|++|++++.....|+-|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            48999977  9999999988888876421                   1389999999999998888887765

>smart00355 ZnF_C2H2 zinc finger

Probab=97.93  E-value=1.9e-05  Score=26.09  Aligned_cols=22  Identities=36%  Similarity=0.881  Sum_probs=15.8

Q ss_pred             ccCCcchhhcCChHHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ++|..|++.|.....+..|++.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH
Confidence            3577777777777777777764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.91  E-value=4.3e-06  Score=28.39  Aligned_cols=25  Identities=48%  Similarity=0.909  Sum_probs=22.1

Q ss_pred             cccCcccchhccCcHHHHHhHHHhc
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      +|.|..|+..|.....+..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5789999999999999999987653

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.85  E-value=1.5e-05  Score=25.95  Aligned_cols=23  Identities=43%  Similarity=0.947  Sum_probs=18.8

Q ss_pred             ccCcccchhccCcHHHHHhHHHh
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKH   34 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~   34 (72)
                      |.|+.|+..|.....+..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            57999999999999999998864

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.80  E-value=3e-05  Score=33.97  Aligned_cols=49  Identities=29%  Similarity=0.717  Sum_probs=20.8

Q ss_pred             CcccchhccCcHHHHHhHHH-hcC----------------------CCCccCCcchhhcCChHHHHHHHHHh
Q psy2647          14 CQVCGKAFSQSSNLITHSRK-HTG----------------------FKPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        14 c~~c~~~~~~~~~l~~~~~~-~~~----------------------~~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      |..|+..|.....+..|+.. |.-                      ...+.|..|++.|.....|..|++.+
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            55666666666666666542 210                      12478999999999999999999864

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.78  E-value=4e-05  Score=29.89  Aligned_cols=29  Identities=34%  Similarity=0.747  Sum_probs=19.5

Q ss_pred             CCCCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647          36 GFKPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus        36 ~~~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      .+.|-.|+.|+..+.+..+|.+|+.+.|.
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            35678899999999999999999987444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.77  E-value=3e-05  Score=25.54  Aligned_cols=23  Identities=30%  Similarity=0.735  Sum_probs=14.8

Q ss_pred             ccCCcchhhcCChHHHHHHHHHhc
Q psy2647          40 FACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      |+|..|+.... ...|..|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            46777777666 777777777655

>PHA00732 hypothetical protein

Probab=97.72  E-value=4e-05  Score=32.75  Aligned_cols=26  Identities=31%  Similarity=0.645  Sum_probs=22.4

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhcc
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      ||.|..|++.|.....|..|++.+|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~   26 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT   26 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC
Confidence            57899999999999999999984344

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.70  E-value=6.7e-05  Score=29.27  Aligned_cols=32  Identities=38%  Similarity=0.626  Sum_probs=22.3

Q ss_pred             CCCcccCcccchhccCcHHHHHhHHHhcCCCC
Q psy2647           8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP   39 (72)
Q Consensus         8 ~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~   39 (72)
                      .+.|..|+.|+....+..+|.+|+....+.+|
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            45688999999999999999999987666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=97.69  E-value=3.2e-05  Score=37.17  Aligned_cols=37  Identities=24%  Similarity=0.630  Sum_probs=29.4

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQR   51 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~   51 (72)
                      +|.|. |+.   ....+..|.+.+.++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            57887 876   45667888889999889999999887654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.37  E-value=9.3e-05  Score=24.51  Aligned_cols=22  Identities=36%  Similarity=0.939  Sum_probs=14.4

Q ss_pred             ccCCcchhhcCChHHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |.|..|...|.....+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3566677777777777766653

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.87  E-value=0.0014  Score=21.85  Aligned_cols=20  Identities=35%  Similarity=0.923  Sum_probs=12.3

Q ss_pred             ccCCcchhhcCChHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      ..|+.||+.| ....+..|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3577777777 3555566654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.85  E-value=0.00034  Score=23.67  Aligned_cols=21  Identities=33%  Similarity=0.687  Sum_probs=11.1

Q ss_pred             ccCcccchhccCcHHHHHhHH
Q psy2647          12 HKCQVCGKAFSQSSNLITHSR   32 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~   32 (72)
                      |.|..|++.|.+...+..|+.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            345555555555555555543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2893|consensus

Probab=96.60  E-value=0.00046  Score=35.29  Aligned_cols=43  Identities=30%  Similarity=0.709  Sum_probs=31.3

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHH
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLR   56 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~   56 (72)
                      .++| |.+|++.|..+.-|..|++    .+.|+|-+|-+.+.+-..|.
T Consensus         9 ~kpw-cwycnrefddekiliqhqk----akhfkchichkkl~sgpgls   51 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLS   51 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhh----hccceeeeehhhhccCCCce
Confidence            3454 6789999999999988876    45789999986554443333

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.53  E-value=0.0051  Score=24.28  Aligned_cols=32  Identities=28%  Similarity=0.528  Sum_probs=23.5

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhccCC-CCCCC
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQHTEM-RPVPV   71 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~~~~-~p~~~   71 (72)
                      .|.|+.|++ ......|..|....|..+ +.+.|
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~C   34 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVC   34 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccC
Confidence            478999999 456788999988767665 33433

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.11  E-value=0.0045  Score=21.96  Aligned_cols=22  Identities=27%  Similarity=0.726  Sum_probs=15.9

Q ss_pred             CccCCcchhhcCChHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      ++.|..|+..|.....+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4667888888877777777754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK04860 hypothetical protein; Provisional

Probab=95.58  E-value=0.0081  Score=29.11  Aligned_cols=28  Identities=21%  Similarity=0.571  Sum_probs=23.1

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +|.|. |+.   ....+..|.++ +.++++|.|
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri-~~g~~~YrC  146 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRV-VRGEAVYRC  146 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHH-hcCCccEEC
Confidence            68897 876   56677899999 888889887

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.55  E-value=0.0083  Score=21.30  Aligned_cols=24  Identities=33%  Similarity=0.999  Sum_probs=16.6

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      |.|..|+..+....            .++.|+.|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            67888887654322            5788999874

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.36  E-value=0.0025  Score=34.29  Aligned_cols=56  Identities=46%  Similarity=0.842  Sum_probs=46.7

Q ss_pred             cccCcccchhccCcHHHHHhHH--HhcCC--CCccCC--cchhhcCChHHHHHHHHHhccCCC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSR--KHTGF--KPFACD--LCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~--~~~~~--~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      ++.|..|...+.....+..+.+  .|.++  +++.|+  .|++.|.....+..|..+ +....
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~  350 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILL-HTSIS  350 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccc-ccCCC
Confidence            5778888899999999999999  78888  899999  799999998888888777 44443

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=95.21  E-value=0.013  Score=26.65  Aligned_cols=30  Identities=30%  Similarity=0.811  Sum_probs=22.9

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCCh
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRK   52 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~   52 (72)
                      ..|+.||..|.-           .+..|..|++||..|...
T Consensus        10 R~Cp~CG~kFYD-----------Lnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYD-----------LNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhcc-----------CCCCCccCCCCCCccCcc
Confidence            479999988754           224688999999888755

The function of members of this family is unknown.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.16  E-value=0.016  Score=23.13  Aligned_cols=25  Identities=36%  Similarity=0.707  Sum_probs=14.7

Q ss_pred             CCCCccCCcchhhcCChHHHHHHHH
Q psy2647          36 GFKPFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        36 ~~~~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      |+.-+.|+-|+..|.......+|..
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhh
Confidence            4445566666666666655555554

>KOG1146|consensus

Probab=95.06  E-value=0.022  Score=35.71  Aligned_cols=55  Identities=24%  Similarity=0.386  Sum_probs=44.0

Q ss_pred             cCCCcccCcccchhccCcHHHHHhHHHhc-------------------------CCCCccCCcchhhcCChHHHHHHHHH
Q psy2647           7 HGEKPHKCQVCGKAFSQSSNLITHSRKHT-------------------------GFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus         7 ~~~~~~~c~~c~~~~~~~~~l~~~~~~~~-------------------------~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      +-.+.+.|+.|++.|+....|..|++..+                         +.++|.|..|...+....+|..|+..
T Consensus       461 S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  461 SFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             cccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence            33477899999999999999999998711                         12568888999999888888888763

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=93.59  E-value=0.046  Score=26.75  Aligned_cols=23  Identities=39%  Similarity=0.936  Sum_probs=17.4

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcch
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCG   46 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~   46 (72)
                      -|.|..||..+             .++.|.+|+.||
T Consensus       134 ~~vC~vCGy~~-------------~ge~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYTH-------------EGEAPEVCPICG  156 (166)
T ss_pred             EEEcCCCCCcc-------------cCCCCCcCCCCC
Confidence            58899997542             346688999998

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=93.36  E-value=0.039  Score=22.33  Aligned_cols=32  Identities=22%  Similarity=0.504  Sum_probs=17.7

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      .|.|+.|+...-.+-     .+......+|+|+.||.
T Consensus        27 ~F~CPnCGe~~I~Rc-----~~CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          27 KFPCPNCGEVEIYRC-----AKCRKLGNPYRCPKCGF   58 (61)
T ss_pred             EeeCCCCCceeeehh-----hhHHHcCCceECCCcCc
Confidence            467777775432221     22222346788888873

>KOG2186|consensus

Probab=93.00  E-value=0.065  Score=27.97  Aligned_cols=47  Identities=28%  Similarity=0.682  Sum_probs=33.3

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHH
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      .|.|..|+.... ...+..|+..-.+ .-|.|..|++.|-. .....|..
T Consensus         3 ~FtCnvCgEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhcc-ccchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            467999998766 4446677765444 46899999999976 45556654

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=92.97  E-value=0.07  Score=20.30  Aligned_cols=29  Identities=21%  Similarity=0.422  Sum_probs=20.0

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      .|.|..|+..+...           ...+..|+.||....
T Consensus         2 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~rIl   30 (44)
T smart00659        2 IYICGECGRENEIK-----------SKDVVRCRECGYRIL   30 (44)
T ss_pred             EEECCCCCCEeecC-----------CCCceECCCCCceEE
Confidence            37899999876533           234689999986543

present in RNA polymerase I, II and III

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=92.97  E-value=0.076  Score=19.33  Aligned_cols=33  Identities=24%  Similarity=0.626  Sum_probs=21.8

Q ss_pred             cCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647          13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus        13 ~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      .|+.|+..|.....-     ...+....+|+.|+..|.
T Consensus         4 ~CP~C~~~f~v~~~~-----l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDK-----LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             ECCCCCceEEcCHHH-----cccCCcEEECCCCCcEee
Confidence            588888888765542     112344688999987764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.61  E-value=0.021  Score=28.95  Aligned_cols=42  Identities=33%  Similarity=0.641  Sum_probs=27.6

Q ss_pred             CcccCcccchhccCcHHHHHhHHH---h-------cCCCC-----ccCCcchhhcCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRK---H-------TGFKP-----FACDLCGRAFQR   51 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~---~-------~~~~~-----~~c~~c~~~~~~   51 (72)
                      +...|+.|+..|..........+.   .       .+..|     +.|+.||.++..
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~   60 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFE   60 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccc
Confidence            567899999999877554444432   1       12233     489999987753

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=92.39  E-value=0.018  Score=27.82  Aligned_cols=13  Identities=31%  Similarity=0.749  Sum_probs=9.8

Q ss_pred             CccCCcchhhcCC
Q psy2647          39 PFACDLCGRAFQR   51 (72)
Q Consensus        39 ~~~c~~c~~~~~~   51 (72)
                      .++|+.||.+|..
T Consensus        28 ~~~c~~c~~~f~~   40 (154)
T PRK00464         28 RRECLACGKRFTT   40 (154)
T ss_pred             eeeccccCCcceE
Confidence            3788888888764

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.12  E-value=0.097  Score=18.72  Aligned_cols=25  Identities=32%  Similarity=0.733  Sum_probs=16.4

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      .|.|..||..+...            ..|..|+.|+.
T Consensus         2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE------------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC------------cCCCcCcCCCC
Confidence            37788888654321            24668888874

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=92.03  E-value=0.11  Score=24.37  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=22.5

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCCh
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRK   52 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~   52 (72)
                      ..|+.|+..|.-           .+..|..|++||..+...
T Consensus        10 r~Cp~cg~kFYD-----------Lnk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYD-----------LNRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCccccc-----------cCCCCccCCCcCCccCcc
Confidence            579999987753           234688999999887655

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=91.89  E-value=0.084  Score=25.58  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=24.2

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      ..-|.|+.|+..|+...++.         ..|.|+.||....
T Consensus       107 ~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~  139 (158)
T TIGR00373       107 NMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLD  139 (158)
T ss_pred             CCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence            34578999998887766653         2589999997543

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=91.33  E-value=0.047  Score=21.22  Aligned_cols=29  Identities=24%  Similarity=0.596  Sum_probs=18.7

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      |.|..|+..|.....+.      . .....|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~------~-~~~~~CP~Cg~   34 (52)
T TIGR02605         6 YRCTACGHRFEVLQKMS------D-DPLATCPECGG   34 (52)
T ss_pred             EEeCCCCCEeEEEEecC------C-CCCCCCCCCCC
Confidence            77999998776432211      1 34567999985

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=91.06  E-value=0.1  Score=25.79  Aligned_cols=32  Identities=22%  Similarity=0.498  Sum_probs=23.7

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      .-|.|+.|+..|....++.         ..|.|+.||....
T Consensus       116 ~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~  147 (178)
T PRK06266        116 MFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLE  147 (178)
T ss_pred             CEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence            4588999998887666542         3699999997554

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=91.01  E-value=0.16  Score=18.40  Aligned_cols=33  Identities=21%  Similarity=0.545  Sum_probs=21.2

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhc
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAF   49 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~   49 (72)
                      ..|+.|...|.......     .......+|..|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~i-----p~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKI-----PPKGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHHC-----CCCCcEEECCCCCCEe
Confidence            35888888877655422     1223457899998766

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=90.87  E-value=0.31  Score=16.28  Aligned_cols=20  Identities=20%  Similarity=0.454  Sum_probs=12.2

Q ss_pred             ccCCcchhhcCChHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      ..|+.|++.+ ....+..|..
T Consensus         2 v~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcc-cHHHHHHHHH
Confidence            3577777766 4455566654

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=90.64  E-value=0.062  Score=29.05  Aligned_cols=24  Identities=33%  Similarity=0.758  Sum_probs=20.0

Q ss_pred             CCCcccCcccchhccCcHHHHHhH
Q psy2647           8 GEKPHKCQVCGKAFSQSSNLITHS   31 (72)
Q Consensus         8 ~~~~~~c~~c~~~~~~~~~l~~~~   31 (72)
                      ..|||.|+.|++.|+....|+-|.
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             cCCceeccccchhhccCccceecc
Confidence            468999999999999887777664

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=90.13  E-value=0.068  Score=19.56  Aligned_cols=29  Identities=24%  Similarity=0.595  Sum_probs=18.7

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      |.|..|+..|.......      . .....|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~------~-~~~~~CP~Cg~   34 (41)
T smart00834        6 YRCEDCGHTFEVLQKIS------D-DPLATCPECGG   34 (41)
T ss_pred             EEcCCCCCEEEEEEecC------C-CCCCCCCCCCC
Confidence            67999998775433221      1 34567999886

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.10  E-value=0.27  Score=18.35  Aligned_cols=25  Identities=28%  Similarity=0.642  Sum_probs=13.9

Q ss_pred             CCCccCCcchhhcCC----hHHHHHHHHH
Q psy2647          37 FKPFACDLCGRAFQR----KVDLRRHKET   61 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~----~~~l~~H~~~   61 (72)
                      .....|..|++.+..    .+.|..|++.
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~   42 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKK   42 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHH
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence            345677778776654    3677777743

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=90.07  E-value=0.13  Score=19.59  Aligned_cols=31  Identities=23%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      ..|.|..|+..+.....          .....|+.||..+.
T Consensus         2 ~~y~C~~CG~~~~~~~~----------~~~~~Cp~CG~~~~   32 (46)
T PRK00398          2 AEYKCARCGREVELDEY----------GTGVRCPYCGYRIL   32 (46)
T ss_pred             CEEECCCCCCEEEECCC----------CCceECCCCCCeEE
Confidence            35789999876644221          11578999986543

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=90.00  E-value=0.19  Score=17.82  Aligned_cols=28  Identities=25%  Similarity=0.572  Sum_probs=16.2

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      |.|..|+..+...           ...+.+|..||....
T Consensus         1 Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RIl   28 (32)
T PF03604_consen    1 YICGECGAEVELK-----------PGDPIRCPECGHRIL   28 (32)
T ss_dssp             EBESSSSSSE-BS-----------TSSTSSBSSSS-SEE
T ss_pred             CCCCcCCCeeEcC-----------CCCcEECCcCCCeEE
Confidence            4677787655421           134678999986543

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=89.84  E-value=0.22  Score=23.56  Aligned_cols=24  Identities=38%  Similarity=0.722  Sum_probs=14.6

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhccC
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      -..|-.||+.|..   |.+|++.||+.
T Consensus        72 ~i~clecGk~~k~---LkrHL~~~~gl   95 (132)
T PF05443_consen   72 YIICLECGKKFKT---LKRHLRTHHGL   95 (132)
T ss_dssp             -EE-TBT--EESB---HHHHHHHTT-S
T ss_pred             eeEEccCCcccch---HHHHHHHccCC
Confidence            4689999998875   48899986543

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=89.77  E-value=0.13  Score=26.26  Aligned_cols=25  Identities=32%  Similarity=0.727  Sum_probs=13.1

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhc
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      .|.|..|+|.|.-..-...|+...|
T Consensus        77 K~~C~lc~KlFkg~eFV~KHI~nKH  101 (214)
T PF04959_consen   77 KWRCPLCGKLFKGPEFVRKHIFNKH  101 (214)
T ss_dssp             EEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred             EECCCCCCcccCChHHHHHHHhhcC
Confidence            4566666666666655566655444

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF13451 zf-trcl: Probable zinc-binding domain

Probab=89.68  E-value=0.23  Score=19.42  Aligned_cols=38  Identities=21%  Similarity=0.456  Sum_probs=23.3

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHh-cCCCCccCCcch
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKH-TGFKPFACDLCG   46 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~-~~~~~~~c~~c~   46 (72)
                      ++.+.|..|+..|.....-+..-..- ....|-.|..|-
T Consensus         2 Dk~l~C~dCg~~FvfTa~EQ~fy~eKgf~n~p~RC~~CR   40 (49)
T PF13451_consen    2 DKTLTCKDCGAEFVFTAGEQKFYAEKGFDNEPKRCPSCR   40 (49)
T ss_pred             CeeEEcccCCCeEEEehhHHHHHHhcCCcCCCccCHHHH
Confidence            45678999998887766544443331 123466777664

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=89.61  E-value=0.22  Score=17.97  Aligned_cols=34  Identities=18%  Similarity=0.487  Sum_probs=21.0

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      ..|+.|+..|........     .....+.|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~~-----~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLG-----ANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHcC-----CCCCEEECCCCCCEEE
Confidence            468888887765543211     1122578999987664

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=89.16  E-value=0.44  Score=21.51  Aligned_cols=25  Identities=28%  Similarity=0.658  Sum_probs=21.4

Q ss_pred             ccC----CcchhhcCChHHHHHHHHHhcc
Q psy2647          40 FAC----DLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus        40 ~~c----~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      |.|    ..|+....+...+..|.+.+|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            688    8899999999999999887664

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.71  E-value=0.18  Score=24.15  Aligned_cols=38  Identities=18%  Similarity=0.388  Sum_probs=23.9

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      ..-|.|+.|+..|.....+..-   .. ...|.|+.||....
T Consensus        97 ~~~Y~Cp~C~~~y~~~ea~~~~---d~-~~~f~Cp~Cg~~l~  134 (147)
T smart00531       97 NAYYKCPNCQSKYTFLEANQLL---DM-DGTFTCPRCGEELE  134 (147)
T ss_pred             CcEEECcCCCCEeeHHHHHHhc---CC-CCcEECCCCCCEEE
Confidence            3458899999888754433210   11 23489999987553

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=88.32  E-value=0.16  Score=20.60  Aligned_cols=32  Identities=22%  Similarity=0.588  Sum_probs=16.4

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      .|.|+.|+.....+     -.+......+|.|+.||.
T Consensus        25 ~F~CPnCG~~~I~R-----C~~CRk~~~~Y~CP~CGF   56 (59)
T PRK14890         25 KFLCPNCGEVIIYR-----CEKCRKQSNPYTCPKCGF   56 (59)
T ss_pred             EeeCCCCCCeeEee-----chhHHhcCCceECCCCCC
Confidence            46677776542111     111222245788888763

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=87.97  E-value=0.24  Score=19.36  Aligned_cols=30  Identities=23%  Similarity=0.623  Sum_probs=19.7

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhc
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAF   49 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~   49 (72)
                      ..|.|..|++.+...          .....+.|+.||...
T Consensus         5 ~~Y~C~~Cg~~~~~~----------~~~~~irCp~Cg~rI   34 (49)
T COG1996           5 MEYKCARCGREVELD----------QETRGIRCPYCGSRI   34 (49)
T ss_pred             EEEEhhhcCCeeehh----------hccCceeCCCCCcEE
Confidence            458899999877211          123467899998643

>KOG2893|consensus

Probab=87.09  E-value=0.31  Score=25.49  Aligned_cols=26  Identities=35%  Similarity=0.718  Sum_probs=21.1

Q ss_pred             CCCccCCcchhhcCChHHHHHHHHHhc
Q psy2647          37 FKPFACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      .++| |.+|++-|.....|++|++..|
T Consensus         9 ~kpw-cwycnrefddekiliqhqkakh   34 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQKAKH   34 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhhhcc
Confidence            3455 7899999999999999987533

>smart00614 ZnF_BED BED zinc finger

Probab=86.02  E-value=0.93  Score=17.48  Aligned_cols=21  Identities=38%  Similarity=0.882  Sum_probs=14.0

Q ss_pred             ccCCcchhhcCCh-----HHHHHHHH
Q psy2647          40 FACDLCGRAFQRK-----VDLRRHKE   60 (72)
Q Consensus        40 ~~c~~c~~~~~~~-----~~l~~H~~   60 (72)
                      ..|..|++.+...     ++|.+|+.
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            4677777666443     57778877

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]

Probab=85.65  E-value=0.52  Score=20.88  Aligned_cols=12  Identities=42%  Similarity=1.176  Sum_probs=6.4

Q ss_pred             cccCcccchhcc
Q psy2647          11 PHKCQVCGKAFS   22 (72)
Q Consensus        11 ~~~c~~c~~~~~   22 (72)
                      |-.|..||..|.
T Consensus        58 Pa~CkkCGfef~   69 (97)
T COG3357          58 PARCKKCGFEFR   69 (97)
T ss_pred             ChhhcccCcccc
Confidence            445566655543

>PF12907 zf-met2: Zinc-binding

Probab=85.44  E-value=0.22  Score=18.62  Aligned_cols=20  Identities=30%  Similarity=0.845  Sum_probs=8.5

Q ss_pred             cCCcchhhcCC---hHHHHHHHH
Q psy2647          41 ACDLCGRAFQR---KVDLRRHKE   60 (72)
Q Consensus        41 ~c~~c~~~~~~---~~~l~~H~~   60 (72)
                      .|.+|...|..   ...|..|..
T Consensus         3 ~C~iC~qtF~~t~~~~~L~eH~e   25 (40)
T PF12907_consen    3 ICKICRQTFMQTTNEPQLKEHAE   25 (40)
T ss_pred             CcHHhhHHHHhcCCHHHHHHHHH
Confidence            45555433332   233445544

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=83.12  E-value=0.94  Score=24.67  Aligned_cols=53  Identities=40%  Similarity=0.824  Sum_probs=42.4

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc--chhhcCChHHHHHHHHH
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKET   61 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~H~~~   61 (72)
                      ...+.|..|...|........+...+.++++..|..  |...+.....+..+.+.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (467)
T COG5048          31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRT   85 (467)
T ss_pred             CchhhcccccccccccchhhhhcccccccCCccccccccccccCCcchhhhhccc
Confidence            345778999999999999999999999999998875  55666666677777665

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=82.09  E-value=0.64  Score=20.45  Aligned_cols=30  Identities=30%  Similarity=0.717  Sum_probs=19.1

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      .|.|+.|++.-        ..+..  ...|.|..|+..|.
T Consensus        35 ~~~Cp~C~~~~--------VkR~a--~GIW~C~kCg~~fA   64 (89)
T COG1997          35 KHVCPFCGRTT--------VKRIA--TGIWKCRKCGAKFA   64 (89)
T ss_pred             CCcCCCCCCcc--------eeeec--cCeEEcCCCCCeec
Confidence            57888887541        11222  33689999988775

>PHA00626 hypothetical protein

Probab=81.14  E-value=0.86  Score=18.36  Aligned_cols=16  Identities=19%  Similarity=0.447  Sum_probs=12.7

Q ss_pred             CCCccCCcchhhcCCh
Q psy2647          37 FKPFACDLCGRAFQRK   52 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~~   52 (72)
                      ...|.|..||..|...
T Consensus        21 snrYkCkdCGY~ft~~   36 (59)
T PHA00626         21 SDDYVCCDCGYNDSKD   36 (59)
T ss_pred             CcceEcCCCCCeechh
Confidence            4579999999988643

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=80.56  E-value=0.85  Score=15.28  Aligned_cols=10  Identities=40%  Similarity=1.042  Sum_probs=7.5

Q ss_pred             cCCcchhhcC
Q psy2647          41 ACDLCGRAFQ   50 (72)
Q Consensus        41 ~c~~c~~~~~   50 (72)
                      .|+.||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            6888887774

Several members are annotated as putative helicases.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=80.45  E-value=0.69  Score=15.28  Aligned_cols=9  Identities=56%  Similarity=1.446  Sum_probs=5.7

Q ss_pred             CCccCCcch
Q psy2647          38 KPFACDLCG   46 (72)
Q Consensus        38 ~~~~c~~c~   46 (72)
                      .+|.|+.||
T Consensus        15 v~f~CPnCG   23 (24)
T PF07754_consen   15 VPFPCPNCG   23 (24)
T ss_pred             ceEeCCCCC
Confidence            356677665

It is likely to bind zinc via its four well-conserved cysteine residues.

>KOG4167|consensus

Probab=80.17  E-value=0.47  Score=28.74  Aligned_cols=24  Identities=29%  Similarity=0.623  Sum_probs=21.1

Q ss_pred             CccCCcchhhcCChHHHHHHHHHh
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      -|.|..|++.|-...++..|+++|
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~H  815 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTH  815 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHH
Confidence            478999999999989999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		4e-13
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		7e-13
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-12
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		7e-12
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		7e-12
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		7e-12
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		7e-12
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		7e-12
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		8e-12
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		8e-12
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		6e-11
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		5e-10
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		1e-09
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-09
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		2e-08
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-08
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		2e-08
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		3e-08
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		5e-08
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		1e-07
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		1e-07
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-07
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		3e-07
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-07
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		3e-07
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		4e-07
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		9e-07
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		2e-06
4gzn_C	60	Mouse Zfp57 Zinc Fingers In Complex With Methylated		2e-06
2emk_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-06
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		8e-06
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		8e-06
2epa_A	72	Solution Structure Of The First And Second Zf-C2h2		9e-06
2ytr_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		9e-06
2emm_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-05
2em6_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-05
2yrj_A	46	Solution Structure Of The C2h2-Type Zinc Finger Dom		2e-05
2ep3_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-05
2eoe_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-05
2emh_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-05
2ytb_A	42	Solution Structure Of C2h2 Type Zinc Finger Domain		3e-05
2eon_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-05
2yta_A	41	Solution Structure Of C2h2 Type Zinc Finger Domain		6e-05
2yu8_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-05
2ytk_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-05
2eop_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-05
2eq2_A	46	Solution Structure Of The 16th C2h2 Type Zinc Finge		8e-05
2ysv_A	42	Solution Structure Of C2h2 Type Zinc Finger Domain		1e-04
2eq1_A	46	Solution Structure Of The 9th C2h2 Type Zinc Finger		1e-04
2ytq_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-04
2emj_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-04
2eme_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-04
2em1_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-04
2lvt_A	29	Solution Structure Of Miz-1 Zinc Finger 9 Length =		1e-04
2em3_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2ytf_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2en1_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2enf_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2eol_A	42	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2en6_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2eml_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-04
2eq3_A	46	Solution Structure Of The 17th C2h2 Type Zinc Finge		3e-04
2ytd_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-04
2emw_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		4e-04
2emy_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		4e-04
2em2_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		4e-04
2eog_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		4e-04
2eom_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04
2yth_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04
2ct1_A	77	Solution Structure Of The Zinc Finger Domain Of Tra		6e-04
2eqw_A	42	Solution Structure Of The 6th C2h2 Type Zinc Finger		6e-04
2yti_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-04
2eor_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-04
2ep0_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
2epy_A	42	Solution Structure Of The 10th C2h2 Type Zinc Finge		8e-04
2ytm_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04
2en4_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04
2em4_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04
2ep2_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		9e-04

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          EKP+KC  CGK+FSQSSNL  H R HTG KP+ C  CG++F +  DL++H+ T HT  +P
Sbjct: 2  EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKP 60
Query: 69 V 69
Sbjct: 61 Y 61

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 40/54 (74%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
          KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH++ QH
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
           GEKP+KC  CGK+FSQ +NL  H R HTG KP+AC  CG++F +   LR H+ T HT  +
Sbjct: 74  GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEK 132
Query: 68  PV 69
           P 
Sbjct: 133 PY 134

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          I  G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          I  G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          I  G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          I  G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          I  G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH
Sbjct: 27 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          I  G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          I  G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/32 (93%), Positives = 30/32 (93%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          I  GEKPHKCQVCGKAFSQSSNLITHSRKHTG
Sbjct: 51 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          I  G+KP +C++C + FSQ ++L  H R HTG KPFACD+CGR F        H  T+HT
Sbjct: 28 IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATL-----HTRTRHT 82
Query: 65 EM 66
          ++
Sbjct: 83 KI 84

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHK 59
          EKP+ C  CGKAFS+SS L+ H R HTG KP+ C  CG+AF +   L  H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAF 49
          I  G+KP +C++C + FSQ + L  H R HTG KPFACD+CGR F
Sbjct: 28 IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDL 55
          +KC  CGK+FS SS+L  H R HTG KP+ CD CG+AF ++  L
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          PHKC+VCGK FS+   L TH R HTG KP+ C  C  A      L +H    H++ RP
Sbjct: 8  PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERP 64

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPV 69
          C+ CG+ F++S NL+ H R HT  +P+ CD+C +AF+R+  LR H+   H++ +P 
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKPF 74

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 8   GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQH 63
           GEKPHKC  + C K++S+  NL TH R HTG KP+ C+   C +AF    D  +H+   H
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 64  TEMRPV 69
           +  +P 
Sbjct: 124 SNEKPY 129

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1  MISNIWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          M S    GEKP++C    C + FS+S  L  H R+HTG KPF C  C R F R   L+ H
Sbjct: 26 MHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Query: 59 KETQHTEMRPV 69
            T HT  +P 
Sbjct: 86 TRT-HTGEKPF 95

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
          +KP+KC  C  +F    NL +H   HTG KP+ C++CG  F R  +L+ H      E
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 8  GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          GEKP+KC  + C   F++S  L  H RKHTG KPF C +C R+F R   L  H
Sbjct: 42 GEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 8  GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          GEKP+ C    CG  F++S  L  H RKHTG +PF C  C RAF R   L  H
Sbjct: 32 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          C+VC +AF++  +L  H R HT  KP+ C LC RAF R+  L RH +  H+
Sbjct: 5  CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 8  GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          GEKP+ C    CG  F++S  L  H RKHTG +PF C  C RAF R   L  H
Sbjct: 33 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 85

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 7  HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT 64
          HG + H C  CGKAF +SS L  H   HTG KPF C    CG+ F    +LR H    HT
Sbjct: 30 HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HT 88
Query: 65 EMRP 68
            RP
Sbjct: 89 GDRP 92

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          G +P+ C VCGK F    +L+ H + HTG KP+ C++C + F  +    RH
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 8   GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRH 58
           GEKP  C    CGK F++S NL  H R HTG KPF C+   C R F    D ++H
Sbjct: 87  GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
          G    +C  CGK F  +  L  H R HTG KP+ C+ C  A  +K  LR H E  H
Sbjct: 1  GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56

>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna Length = 60

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          E+P  C  CGK +  +S L  H R H G++P +C  CG+ F+ + ++ RH
Sbjct: 2  ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51

>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 668- 700) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP++C+ CGKAFSQ+++LI H R HTG KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG--FKPFACDLCGRAFQRKVDLRRHKETQHT 64
          GEKP+ C VCG  F +   +  H R H G   KP+ C  CG+ F R   L  H +  H+
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1  MISNIWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
          +++ +    +P+ C V  C + FS+S  L  H R HTG KPF C +C R F R   L  H
Sbjct: 9  LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 59 KET 61
            T
Sbjct: 69 IRT 71

>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains From Human Krueppel-Like Factor 10 Length = 72

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKET 61
          CGK + +SS+L  H+R HTG KPF+C    C R F R  +L RH+ T
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 760- 792) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC  CGKAFSQ+S L  H R HTG KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40

>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 544- 576) Of Human Zinc Finger Protein 95 Homolog Length = 46

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          E+PHKC  CGK+F QS++LI H R HTG KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40

>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 199- 231) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EK +KC VCGK FSQSS+L TH R HTG KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40

>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain (781- 813) From Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP++C  CGKAF+Q +NL  H R HTG KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40

>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 631- 663) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP++C  CGKAF+  SNL TH + HTG KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40

>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 508- 540) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC  CGK F+Q+S+L  H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP---FACDLCGRAFQRKVDLRRHKETQHT 64
          GEKP +C  CGK + +  NL+ H  ++   +    F C +C   F+R+++LR H  +   
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG 91
Query: 65 EM 66
          EM
Sbjct: 92 EM 93

>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 491- 523) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          E+P+ C VCGKAF+  SNLI H + HTG KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40

>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In Zinc Finger Protein 32 Length = 42

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP++C  CGKAFSQ  +LI H R HTG  P
Sbjct: 9  EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39

>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 397- 429) Of Human Zinc Finger Protein 95 Homolog Length = 46

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KCQVCGKAF  SS+L+ H   H+G +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40

>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In Zinc Finger Protein 32 Length = 41

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 3  SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          S+   GEKP++C+ CGK+FSQ  +L  H R HTG  P
Sbjct: 2  SSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38

>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 648- 680) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC  CGK F+Q+S+L  H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40

>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 396- 428) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC  CGK F+Q+S+L  H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40

>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 719- 751) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKPH+C+ CGK+FS +S LI H R HTG  P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40

>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          KP++C  CGKAFSQ+S L  H R HTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40

>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In Zinc Finger Protein 473 Length = 42

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          GEKP+ CQ CGKAF+QSS L  H R HTG
Sbjct: 7  GEKPYVCQECGKAFTQSSCLSIHRRVHTG 35

>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC  CGKAF   SNL TH   HTG KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40

>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 775- 807) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+ C  CGKAFS  S LI H R H+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40

>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 612- 644) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP +C  CGK+FS SS L TH R HTG KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40

>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 725- 757) Of Human Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+ C  CGKAF  S+ L+ H R HTG KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40

>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 637- 667) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          GEKP+ C  CGKAF+  S LI H   HTG KP
Sbjct: 7  GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38

>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9 Length = 29

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
          KP +C +CGKAF+Q+S+LI H R+HTG K
Sbjct: 1  KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29

>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 640- 672) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP++C+VC KAF+Q ++L  H + HTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40

>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 607- 639) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP +C  C KAF+  SNLI H R HTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40

>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 563- 595) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP KC+ CGK F+Q+S L +H R HTG KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40

>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 340- 372) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC  CGK F+Q+S+L+ H   HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40

>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 581- 609) Of Human Zinc Finger Protein 268 Length = 42

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          GEKP++C  CGKAF   S LI H R HTG
Sbjct: 7  GEKPYECTDCGKAFGLKSQLIIHQRTHTG 35

>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 887- 919) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+ C  CGK FSQ S L  H R HTG KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40

>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 752- 784) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP++C VCGKAFS   +L  H R H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40

>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP++C  CGKAFS  S+L TH   HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40

>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 426- 458) Of Human Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC  CGKAF + ++L  H R HTG++P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40

>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 301- 331) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
          GEKP+ C  CGK FS  S LI H R HTG K
Sbjct: 7  GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37

>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 551- 583) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          E P++C  CGKAFS+   LI+H R H G KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40

>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 584- 616) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP KC+ CGKAF Q+ +L +H R HTG KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40

>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693- 723) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          G KP+ C  CGKAF   S LI H R HTG KP
Sbjct: 7  GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38

>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 341- 373) Of Human Zinc Finger Protein 95 Homolog Length = 46

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          E+ H+C  CGK F Q+SN I H R HTG KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40

>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 479- 511) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP +C+ CGK F+Q+S+L +H R HTG KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40

>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of Transcriptional Repressor Ctcf Protein Length = 77

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHS-RKHT-GFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
          GEKP++C +C   F+QS  +  H  +KHT     F C  C     RK DL  H   QH+ 
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Query: 66 MRP 68
            P
Sbjct: 72 SGP 74

>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 484 Length = 42

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          GEKP+ C  CGKAF + S+ ITH R HTG
Sbjct: 7  GEKPYVCTECGKAFIRKSHFITHERIHTG 35

>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 564- 596) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC  CGK F+Q+S+L  H   HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40

>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 255- 287) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+ C+ CGKAF   S L  H R HTG KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40

>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 528- 560) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC VC K+F   S+L  H R HTG KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40

>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 268 Length = 42

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          GEK H+C  CGKAFS  S LI H R HTG
Sbjct: 7  GEKLHECNNCGKAFSFKSQLIIHQRIHTG 35

>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 696- 728) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP+KC  CGKAF  +S+   H R HTG +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40

>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 284- 316) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 20/30 (66%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
          EKP+KC  CGKAF   SNL TH   HTG K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39

>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 724- 756) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          ++P++C  CGKAF   S+LI H R HTG KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40

>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 603- 635) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
          EKP++C +CGK+F++ S L  H + HTG KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-26
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	9e-24
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-10
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-23
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-19
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-22
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-22
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-15
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	7e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-22
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-21
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	8e-15
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	8e-22
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-14
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-21
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-19
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	8e-10
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-21
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-14
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-10
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-21
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	8e-21
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-21
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-18
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-15
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-12
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-21
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-14
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-21
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-20
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-19
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-21
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-18
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-14
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-21
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-10
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-07
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	5e-21
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-12
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	5e-21
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	6e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-20
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-20
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-20
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-20
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-20
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-12
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-11
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-20
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-19
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-15
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	7e-20
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-19
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	8e-19
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	9e-20
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-16
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-18
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-13
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	7e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-18
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-16
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-18
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	9e-15
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	6e-18
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-12
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-09
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	7e-18
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-17
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-16
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-15
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	9e-18
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	4e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-17
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-16
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-16
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-13
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-16
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-06
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-15
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-06
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-15
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-06
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-15
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-15
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-15
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-15
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-15
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-15
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	9e-07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	3e-15
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	9e-07
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-15
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-06
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	4e-15
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-05
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-15
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	5e-15
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-06
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-15
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	5e-15
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	2e-06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-15
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-07
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-15
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-06
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	6e-15
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-15
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-07
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-15
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-15
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-06
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-15
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-15
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-15
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-06
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-15
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-06
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	9e-15
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-06
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	9e-15
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-06
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	9e-15
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-06
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	9e-15
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-14
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-06
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-14
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-14
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	1e-14
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	4e-06
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-14
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-14
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-06
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-14
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-06
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-14
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-14
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-06
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-14
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-14
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-14
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-14
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-06
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-14
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-06
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-14
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-14
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-06
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-14
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-06
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-14
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-14
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-06
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-14
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-14
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-06
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-14
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	3e-05
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-14
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-06
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-14
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-14
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-14
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-14
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-06
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-14
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-06
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-14
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-06
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-14
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-14
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-14
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-06
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	3e-14
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	1e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-14
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-06
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-14
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-06
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-14
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-06
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-14
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-06
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-14
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-14
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	3e-14
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	1e-06
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-14
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-14
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-06
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-14
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-06
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-14
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-06
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-14
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	5e-06
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-14
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-14
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	5e-14
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	6e-07
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-06
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-14
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-06
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-14
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-07
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-14
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-06
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-14
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-06
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-14
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-13
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-06
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-13
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-07
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-13
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-13
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-05
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	8e-13
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	3e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	4e-12
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	4e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-11
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	8e-11
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	3e-10
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	4e-05
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	5e-10
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	1e-05
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	1e-09
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-05
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	9e-05
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	1e-08
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	2e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	6e-08
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-06
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	4e-07
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	3e-06
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	6e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	3e-06
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	9e-06
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	3e-05
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	3e-05
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	5e-05
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	2e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	7e-05
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-04
1ard_A	29	Yeast transcription factor ADR1; transcription reg	2e-04
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	8e-04

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 89.0 bits (221), Expect = 9e-26
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHT---GFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          G    +C++CG    Q ++L  H RKH        F C+ CG+ F++   +  H+   H 
Sbjct: 4  GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63

Query: 65 EMRPVP 70
           +   P
Sbjct: 64 ALLLAP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.0 bits (86), Expect = 3e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
           +G     C++CG   ++K  L  H+   H E  
Sbjct: 2  SSGSSGLQCEICGFTCRQKASLNWHQRK-HAETV 34

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 84.1 bits (209), Expect = 9e-24
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG--FKPFACDLCGRAFQRKVDLRRHKETQHTE 65
          GEKP++C +C   F+QS  +  H  +        F C  C     RK DL  H   QH+ 
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71

Query: 66 MRP 68
            P
Sbjct: 72 SGP 74

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.1 bits (118), Expect = 6e-10
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 7  HGE--KPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFA 41
          H E      C  C    ++ S+L  H RK H+   P +
Sbjct: 39 HTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.7 bits (112), Expect = 4e-09
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 26 NLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +  +  R H+G KP+ C +C   F +   ++ H   +HTE   
Sbjct: 2  SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA 44

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 82.1 bits (204), Expect = 6e-23
 Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH +  H 
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HL 86

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 72.5 bits (179), Expect = 5e-19
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 9  EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          E+P+ C V  C + FSQS +L  H R HTG KPF C +C R F R   L  H  T HT
Sbjct: 2  ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT 58

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 53.6 bits (130), Expect = 1e-11
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
          GEKP  C +CG+ F++S     H++ H   K
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 81.3 bits (202), Expect = 2e-22
 Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
             PHKC+VCGK FS+   L TH R HTG KP+ C  C  A      L +H    H++ R
Sbjct: 5  SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDER 63

Query: 68 P 68
          P
Sbjct: 64 P 64

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 80.9 bits (201), Expect = 2e-22
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          G KP+KC+ C  A + SS+L  H R H+  +PF C +C  A +    L  H  + HT
Sbjct: 33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS-HT 88

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 62.8 bits (154), Expect = 3e-15
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
           E+P KCQ+C  A   SS L  H R HTG    + 
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 36.2 bits (85), Expect = 7e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
               P  C++CG+ F RK  L+ H    HT
Sbjct: 3  SGSSGPHKCEVCGKCFSRKDKLKTHMRC-HT 32

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 80.2 bits (199), Expect = 5e-22
 Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
           +K   C+ CG+ F++S NL+ H R HT  +P+ CD+C +AF+R+  LR H+   H++ +
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEK 72

Query: 68 P 68
          P
Sbjct: 73 P 73

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 78.6 bits (195), Expect = 2e-21
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
            E+P+ C +C KAF +  +L  H   H+  KPF C  CG+ F +   L  HK   H +  
Sbjct: 42  DERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL-HMQTS 100

Query: 68  P 68
            
Sbjct: 101 S 101

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 62.1 bits (152), Expect = 8e-15
 Identities = 15/35 (42%), Positives = 15/35 (42%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
            EKP KCQ CGK F QS  L  H   H        
Sbjct: 70  KEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 48.6 bits (117), Expect = 2e-09
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 24 SSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          SS            K F C  CGR F +  +L  H+ T HT
Sbjct: 2  SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT-HT 41

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 79.0 bits (196), Expect = 8e-22
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           +KP+KC  C  +F    NL +H   HTG KP+ C++CG  F R  +L+ H    H+
Sbjct: 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HS 69

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 59.4 bits (145), Expect = 5e-14
 Identities = 17/33 (51%), Positives = 26/33 (78%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF 40
          GEKP++C +CG  F++ +NL TH+R H+G KP+
Sbjct: 42 GEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 48.2 bits (116), Expect = 1e-09
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 24 SSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
            +   HS      KP+ CD C  +F+ K +L  HK   HT
Sbjct: 2  GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HT 41

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 79.1 bits (196), Expect = 1e-21
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
          KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R  + +RH++     
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QHI 56

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 72.5 bits (179), Expect = 3e-19
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          GEKP  C +CG+ F++S     H        P   D       +   L         
Sbjct: 28 GEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKK 83

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 49.0 bits (118), Expect = 8e-10
 Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 3/35 (8%)

Query: 7  HGEKPHKCQVCGKAFSQSSNL---ITHSRKHTGFK 38
              P       +  S++ +L   +   +K  G +
Sbjct: 54 QHILPILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 78.6 bits (195), Expect = 1e-21
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
            + +KC  CGK+FS SS+L  H R HTG KP+ CD CG+AF ++  L  H    HT
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HT 70

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 59.8 bits (146), Expect = 3e-14
 Identities = 21/33 (63%), Positives = 23/33 (69%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF 40
          GEKP+KC  CGKAF Q S+LI H R HTG  P 
Sbjct: 43 GEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 50.1 bits (121), Expect = 2e-10
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 23 QSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
           S +      +    + + CD CG++F    DL +H+ T HT  +P
Sbjct: 2  SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKP 46

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 78.7 bits (195), Expect = 2e-21
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          G     C++CGK F    +L  H   H+G KP++C +CG  F+RK  +  H  + H 
Sbjct: 4  GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HD 59

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 77.1 bits (191), Expect = 8e-21
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG--FKPFACDLCGRAFQRKVDLRRHKETQHT 64
          GEKP+ C VCG  F +   +  H R H G   KP+ C  CG+ F R   L  H +  H+
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           +G    AC++CG+ F+    L RHK + H+
Sbjct: 2  SSGSSGVACEICGKIFRDVYHLNRHKLS-HS 31

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 79.1 bits (196), Expect = 2e-21
 Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 7  HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT 64
          HG + H C  CGKAF +SS L  H   HTG KPF C    CG+ F    +LR H    HT
Sbjct: 30 HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HT 88

Query: 65 EMRP 68
            RP
Sbjct: 89 GDRP 92

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 71.4 bits (176), Expect = 3e-18
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 8   GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQH 63
           GEKP +C    CGK FS   NL TH R HTG +P+ C    C + F +  +L+ H  T H
Sbjct: 59  GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT-H 117

Query: 64  T 64
            
Sbjct: 118 A 118

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 63.7 bits (156), Expect = 3e-15
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 9  EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           +   C    C K F  +S +  H   H G +   C  CG+AF     L+RH+   HT
Sbjct: 3  PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV-HT 58

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 55.2 bits (134), Expect = 6e-12
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 8   GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPF 40
           G++P+ C    C K F+QS+NL +H   H   K  
Sbjct: 89  GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 77.5 bits (192), Expect = 3e-21
 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
          GEKP+ C  CGKAFS+SS L+ H R HTG KP+ C  CG+AF +   L  H+   HT   
Sbjct: 11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGP 69

Query: 68 P 68
           
Sbjct: 70 S 70

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 60.2 bits (147), Expect = 2e-14
 Identities = 20/34 (58%), Positives = 22/34 (64%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
          GEKP+KC  CGKAFSQ+S LI H R HT      
Sbjct: 39 GEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 41.7 bits (99), Expect = 4e-07
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 27 LITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
              S  H+G KP+ C  CG+AF R   L +H+   HT  +P
Sbjct: 2  SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HTGEKP 42

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 79.1 bits (196), Expect = 3e-21
 Identities = 19/57 (33%), Positives = 27/57 (47%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
            E+   C VC + F +   L  H   HTG  P+ C  C + F +K DL+ H    H+
Sbjct: 63  SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 76.4 bits (189), Expect = 3e-20
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ--HTE 65
          G    +C  C K F     L  H+RKHTG KPF C  CG+ + RK +L  H+     +  
Sbjct: 4  GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63

Query: 66 MRP 68
           + 
Sbjct: 64 EQV 66

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 72.9 bits (180), Expect = 6e-19
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRK---HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          GEKP +C  CGK + +  NL+ H  +   +   + F C +C   F+R+++LR H  + HT
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS-HT 90

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           +G     C  C + F  K  L+ H    HT
Sbjct: 2  SSGSSGVECPTCHKKFLSKYYLKVHNRK-HT 31

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 77.8 bits (193), Expect = 3e-21
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
            +P+ CQ CGK F Q S++  H+  HTG KP  C +CG+AF +  +L  H    HT
Sbjct: 26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK-HT 81

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 69.4 bits (171), Expect = 7e-18
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
           C++CGK+F +SS L TH   H+  +P+ C  CG+ F +K D+++H    HT  +P
Sbjct: 3  DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKP 57

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 60.1 bits (147), Expect = 3e-14
 Identities = 29/29 (100%), Positives = 29/29 (100%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          GEKPHKCQVCGKAFSQSSNLITHSRKHTG
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 76.8 bits (190), Expect = 4e-21
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSR--KHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
          GE  ++C+VC + ++  SN   H         K + C  C + F RK ++  H +  H
Sbjct: 7  GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 48.3 bits (116), Expect = 8e-10
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
            K + C  C K F++  N+  H +    
Sbjct: 37 NVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 41.8 bits (99), Expect = 4e-07
 Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)

Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKET-QHTEMRP 68
              G   + C +C R +    +  RH  T     ++ 
Sbjct: 3  FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV 40

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 76.8 bits (190), Expect = 5e-21
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
             P KC  C  + S  + L  H R H   +PF C+ C    ++  +L +H +    
Sbjct: 6  SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FH 61

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 55.2 bits (134), Expect = 2e-12
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
           ++P KC  C     Q SNL  H +K  G      
Sbjct: 34 TDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 39.8 bits (94), Expect = 2e-06
 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
             +   P  C  C  +   K  LR H+   H   RP
Sbjct: 2  SSGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRP 37

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 76.4 bits (189), Expect = 5e-21
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +   C+VC +AF++  +L  H R HT  KP+ C LC RAF R+  L RH +  H+
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 51.3 bits (124), Expect = 6e-11
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRK-HTG 36
           EKP+ C +C +AF++   LI H++K H+G
Sbjct: 27 NEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 78.6 bits (195), Expect = 2e-20
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          GEKP+ C  CGK+FS+S +L  H R HTG KP+ C  CG++F  K DL RH+ T HT
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HT 73

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 78.6 bits (195), Expect = 2e-20
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           GEKP+KC  CGK+FS+  NL TH R HTG KP+ C  CG++F R+  L  H+ T HT
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT-HT 185

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 78.3 bits (194), Expect = 2e-20
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           GEKP+ C  CGK+FSQ ++L  H R HTG KP+ C  CG++F R+ +L  H+ T HT
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT-HT 157

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 78.3 bits (194), Expect = 3e-20
 Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           GEKP+KC  CGK+FSQ +NL  H R HTG KP+AC  CG++F +   LR H+ T HT
Sbjct: 74  GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HT 129

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 77.9 bits (193), Expect = 4e-20
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           GEKP+KC  CGK+FS   +L  H R HTG KP+ C  CG++F ++ +LR H+ T HT
Sbjct: 46  GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HT 101

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 58.2 bits (142), Expect = 2e-12
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
           GEKP+KC  CGK+FS+   L  H R HTG K 
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 54.8 bits (133), Expect = 3e-11
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 20 AFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +   SS+ +  +    G KP+AC  CG++F R   L  H+ T HT
Sbjct: 2  SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HT 45

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 75.9 bits (188), Expect = 3e-20
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
          G+K + CQ CGK+F+  S    H   H G +P+ C +CG+ F+ K  L  H +  HT ++
Sbjct: 7  GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIK 64

Query: 68 P 68
          P
Sbjct: 65 P 65

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 74.4 bits (184), Expect = 1e-19
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
          G +P+ C VCGK F    +L+ H + HTG KP+ C++C + F  +    RH     +  +
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH---VTSCTK 90

Query: 68 P 68
           
Sbjct: 91 S 91

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 64.0 bits (157), Expect = 2e-15
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLR 56
           G KP++C +C K F    +   H    +  K +      +         
Sbjct: 62  GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.9 bits (97), Expect = 2e-06
 Identities = 2/22 (9%), Positives = 9/22 (40%)

Query: 8   GEKPHKCQVCGKAFSQSSNLIT 29
             K ++     +  +++S   +
Sbjct: 88  CTKSYEAAKAEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 34.7 bits (81), Expect = 4e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          S   +G K + C  CG++F  K    RH    H  +RP
Sbjct: 2  SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRP 37

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 75.2 bits (186), Expect = 7e-20
 Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 8  GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          GEKP++C    C + FS+S  L  H R+HTG KPF C  C R F R   L+ H  T HT
Sbjct: 33 GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HT 90

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 74.1 bits (183), Expect = 2e-19
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 8   GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKET 61
           G KP +C+ C + FS+S +L TH+R HTG KPF+C    C + F R  +L RH   
Sbjct: 63  GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 72.6 bits (179), Expect = 8e-19
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 8  GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQH 63
           ++P  C    C K + + S+L  HSRKHTG KP+ CD   C R F R   L+RH+   H
Sbjct: 3  EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-H 61

Query: 64 T 64
          T
Sbjct: 62 T 62

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 44.4 bits (106), Expect = 9e-08
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 8   GEKPHKCQV--CGKAFSQSSNLITHSRKH 34
           GEKP  C+   C K F++S  L+ H   H
Sbjct: 91  GEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 74.1 bits (183), Expect = 9e-20
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG----FKPFACDLCGRAFQRKVDLRRHKETQH 63
          GEKP+ C  C K F Q   L  H +++         F C  CG+ F R+  + RH +   
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-C 70

Query: 64 T 64
           
Sbjct: 71 A 71

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 64.9 bits (159), Expect = 5e-16
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAF 49
                C  CGK F++ + +  H+    G      +  G + 
Sbjct: 44 VPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 44.8 bits (107), Expect = 3e-08
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 26 NLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
          +  +  R HTG KP+AC  C + F++K  L  H +  H  
Sbjct: 2  SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 41

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 73.0 bits (180), Expect = 1e-18
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 8   GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKETQH 63
           GEKPHKC    C K++S+  NL TH R HTG KP+ C  + C +AF    D  +H+   H
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123

Query: 64  TEMRP 68
           +  +P
Sbjct: 124 SNEKP 128

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 64.9 bits (159), Expect = 2e-15
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 8  GEKPHKCQVCG-----KAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKE 60
            K   C   G     + F     L+ H R+HTG KP  C    C +++ R  +L+ H  
Sbjct: 31 ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90

Query: 61 TQHT 64
          + HT
Sbjct: 91 S-HT 93

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 64.5 bits (158), Expect = 3e-15
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 8   GEKPHKCQ--VCGKAFSQSSNLITH-SRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQ 62
           GEKP+ C+   C KAFS +S+   H +R H+  KP+ C L  C + +     LR+H +T 
Sbjct: 94  GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT- 152

Query: 63  HT 64
             
Sbjct: 153 VH 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 59.9 bits (146), Expect = 2e-13
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 9  EKPHKCQVCGKAFSQSSNLITH---SRKHTGFKPFACDLCG-----RAFQRKVDLRRHKE 60
          E   +   C + F     L+ H      H   K F C   G     R F+ +  L  H  
Sbjct: 1  ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 61 TQHT 64
            HT
Sbjct: 61 R-HT 63

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.0 bits (115), Expect = 7e-09
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 8   GEKPHKCQV--CGKAFSQSSNLITHSRKHTG 36
            EKP+ C++  C K ++  S+L  H +   G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 70.3 bits (173), Expect = 3e-18
 Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 6  WH-GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
           H GEKP+ C    CG  F++S  L  H RKHTG +PF C  C RAF R   L  H + 
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 65.6 bits (161), Expect = 2e-16
 Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTE 65
                   CGK +++SS+L  H R HTG KP+ CD   CG  F R  +L RH    HT 
Sbjct: 4  ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTG 62

Query: 66 MRP 68
           RP
Sbjct: 63 HRP 65

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.1 bits (105), Expect = 6e-08
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKH 34
          G +P +CQ C +AFS+S +L  H ++H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 70.3 bits (173), Expect = 4e-18
 Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 6  WH-GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ 62
           H GEKP+KC  + C   F++S  L  H RKHTG KPF C +C R+F R   L  H +  
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR- 97

Query: 63 HT 64
          H 
Sbjct: 98 HQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 61.9 bits (151), Expect = 9e-15
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 9  EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT 64
           + H C    C K +++SS+L  H R HTG KP+ C    C   F R  +L RH    HT
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HT 71

Query: 65 EMRP 68
            +P
Sbjct: 72 GAKP 75

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 71.2 bits (175), Expect = 6e-18
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 8   GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQH 63
           GEKP  C    CGK F++S NL  H R HTG KPF C+   C R F    D ++H    H
Sbjct: 87  GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-H 145

Query: 64  TEMRP 68
           T  + 
Sbjct: 146 TSDKS 150

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 63.1 bits (154), Expect = 1e-14
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 7   HGEKPHK---------CQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDL 55
           H   P +         C   GK+F     L+ H R HTG KPF C    CG+ F R  +L
Sbjct: 49  HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENL 108

Query: 56  RRHKETQHT 64
           + HK T HT
Sbjct: 109 KIHKRT-HT 116

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 61.9 bits (151), Expect = 3e-14
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA---------CDLCGRAFQRKVDLRRH 58
           +     + C + FS    L+TH        P           C   G++F+ K  L  H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81

Query: 59 KETQHT 64
              HT
Sbjct: 82 IRV-HT 86

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 57.7 bits (140), Expect = 1e-12
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 8   GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD 43
           GEKP KC+   C + F+ SS+   H   HT  K     
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.4 bits (116), Expect = 4e-09
 Identities = 7/49 (14%), Positives = 12/49 (24%)

Query: 17 CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
           G +       ++               C R F    +L  H   +H  
Sbjct: 3  SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 71.9 bits (177), Expect = 7e-18
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 8   GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQH 63
           GEKP  C  + C K F+   +L  HS  HTG K F CD   C   F  K ++++H     
Sbjct: 39  GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-F 97

Query: 64  TEMRPVP 70
             ++   
Sbjct: 98  HNIKICV 104

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 70.7 bits (174), Expect = 2e-17
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 8  GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQH 63
            K + C    CG A++++  L  H  KHTG KPF C    C + F     L RH  T H
Sbjct: 9  VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-H 67

Query: 64 T 64
          T
Sbjct: 68 T 68

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 67.6 bits (166), Expect = 3e-16
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 8   GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
            + P++C  + C K FS  S L  H + H G+     D C    +      +H    H +
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 64.2 bits (157), Expect = 6e-15
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 7   HGEK--PHKCQV--CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKE 60
           H  K   + C    CGKAF + + L  H   HT   P+ C  + C + F     L+RH++
Sbjct: 98  HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157

Query: 61  TQHT 64
             H 
Sbjct: 158 V-HA 160

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 38.0 bits (89), Expect = 4e-05
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 28 ITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT 64
          +        +K + C    CG A+ +   L+ H    HT
Sbjct: 1  MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HT 38

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 68.0 bits (167), Expect = 9e-18
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFACDLCGRAF 49
            KP+ CQ CGK FS+  +L  H ++ HT  +P  C +     
Sbjct: 9  VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 39.5 bits (93), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     +  KP+ C  CG+ F R   L  H +  HT  RP
Sbjct: 2  SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP 41

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 36.0 bits (84), Expect = 4e-05
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 8  GEKPHKCQVCGKAFSQ 23
           E+PHKCQV     S 
Sbjct: 38 SERPHKCQVWVSGPSS 53

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 68.3 bits (168), Expect = 2e-17
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 8  GEKPHKCQV--CGKAFSQSSNLITHSR-KHTGFKPFACD--LCGRAFQRKVDLRRHKETQ 62
          G     C    CG+ FS    L  H + +H   K F+C    CG++F  K  L+ H +  
Sbjct: 4  GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL- 62

Query: 63 HTEMRP 68
          H++ R 
Sbjct: 63 HSDTRD 68

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 66.0 bits (162), Expect = 1e-16
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 5  IWH-GEKPHKCQ--VCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAF 49
            H  +K   C    CGK+F+   +L  H + H+  + + C+  G + 
Sbjct: 31 YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.1 bits (92), Expect = 4e-06
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 34 HTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRP 68
           +G     CD   CGR F  +  L  HK+ QH   + 
Sbjct: 2  SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS 38

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 66.1 bits (162), Expect = 1e-16
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 8  GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
           + P++C  + C K FS  S L  H + H G+     D C    +      +H    H
Sbjct: 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 56.9 bits (138), Expect = 6e-13
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 12 HKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMR 67
          + C    CGKAF + + L  H   HT   P+ C    C + F     L+RH++  H    
Sbjct: 2  YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYP 60

Query: 68 P 68
           
Sbjct: 61 C 61

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 63.7 bits (156), Expect = 4e-16
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE+ H+C  CGK F Q+SN I H R HTG KP   
Sbjct: 9  GERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.9 bits (89), Expect = 7e-06
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +      G +   C  CG+ F +  +  +H+   HT  +P
Sbjct: 2  SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEKP 40

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.5 bits (153), Expect = 1e-15
 Identities = 23/35 (65%), Positives = 25/35 (71%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEK +KC VCGK FSQSS+L TH R HTG KP   
Sbjct: 9  GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 3e-06
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +      G K + CD+CG+ F +   L+ H+   HT
Sbjct: 2  SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HT 36

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 62.2 bits (152), Expect = 2e-15
 Identities = 16/35 (45%), Positives = 18/35 (51%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP  C  C KAFS  S L+ H + H   KP   
Sbjct: 7  GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 38.3 bits (90), Expect = 5e-06
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          S   +G KPF C  C +AF  K  L  H++T H E +P
Sbjct: 2  SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKP 38

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.7 bits (151), Expect = 2e-15
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE P  C  CGK F+  +NLI H + HTG +P   
Sbjct: 9  GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 1e-06
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG  PF C  CG+ F  K +L  H++  HT  RP
Sbjct: 2  SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGERP 40

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.7 bits (151), Expect = 2e-15
 Identities = 18/36 (50%), Positives = 20/36 (55%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
          GEKP KC +CGK+F   S L  HS  HT  KP    
Sbjct: 9  GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 2e-07
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KPF CD+CG++F  +  L RH    HT
Sbjct: 2  SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HT 36

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 62.7 bits (153), Expect = 2e-15
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 8  GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
            +P+ C V  C + FS+S  L  H R HTG KPF C +C R F R   L  H  T HT
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT 73

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 35.0 bits (81), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 21 FSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRP 68
              +NL+ +       +P+AC +  C R F R  +L RH    HT  +P
Sbjct: 3  PHPMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRI-HTGQKP 49

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.8 bits (151), Expect = 3e-15
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC+ CGK ++   NL  H + HTG +P   
Sbjct: 9  GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C+ CG+ +  K +L  H++  HT  RP
Sbjct: 2  SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HTGERP 40

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.7 bits (151), Expect = 3e-15
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE+P+ C VCGKAF+  SNLI H + HTG KP   
Sbjct: 9  GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 3e-06
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG +P+ C +CG+AF  + +L +H++  HT
Sbjct: 2  SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HT 36

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.7 bits (151), Expect = 3e-15
 Identities = 20/35 (57%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP +C  C KAF+  SNLI H R HTG KP   
Sbjct: 9  GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 9e-07
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KPF C  C +AF  K +L  H+ T HT  +P
Sbjct: 2  SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKP 40

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 3e-15
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEK + C+ CGK+FS++  L+ H R H+G KP   
Sbjct: 9  GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 9e-07
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG K + C  CG++F R   L +H+   H+
Sbjct: 2  SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HS 36

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 4e-15
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC VC K+F   S+L  H R HTG KP   
Sbjct: 9  GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 4e-06
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ CD+C ++F+    L  H+   HT
Sbjct: 2  SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HT 36

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 61.0 bits (149), Expect = 4e-15
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE P++C  CGKAF++   LI+H R H G    + 
Sbjct: 7  GENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 36.0 bits (84), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          S   +G  P+ C  CG+AF RK  L  H+ T H     
Sbjct: 2  SSGSSGENPYECSECGKAFNRKDQLISHQRT-HAGESG 38

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 5e-15
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C  CGKAF+  SNL TH + HTG KP   
Sbjct: 9  GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 2e-06
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C  CG+AF  + +L  H++  HT
Sbjct: 2  SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HT 36

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 61.0 bits (149), Expect = 5e-15
 Identities = 18/35 (51%), Positives = 19/35 (54%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G KP+ C  C K FS  S LI H R HTG KP   
Sbjct: 9  GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 39.1 bits (92), Expect = 2e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C  C + F  K  L  H+ + HT
Sbjct: 2  SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HT 36

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 5e-15
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+ C  CGKAF+  SNLI H + HT  KP   
Sbjct: 9  GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 3e-06
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C  CG+AF  + +L +H++  HT
Sbjct: 2  SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HT 36

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 5e-15
 Identities = 18/35 (51%), Positives = 18/35 (51%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP KC  CGKAF   S LI H R H   K    
Sbjct: 9  GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP  C  CG+AF  K  L  H+ T H + + 
Sbjct: 2  SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKH 40

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 61.0 bits (149), Expect = 5e-15
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C  C KAF+  SNL+ H R HTG    + 
Sbjct: 9  GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 40.9 bits (97), Expect = 4e-07
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C+ C +AF  K +L  H+ T HT
Sbjct: 2  SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HT 36

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 5e-15
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KCQVCGKAF  SS+L+ H   H+G +P   
Sbjct: 9  GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 8e-06
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
               TG KP+ C +CG+AF+    L +H    H+  RP
Sbjct: 3  SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGERP 40

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.0 bits (149), Expect = 6e-15
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
           EKP+KC+ CGK +++  NL  H R H G K    
Sbjct: 9  VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 1e-06
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     +  KP+ C+ CG+ + R+++L  H+   H 
Sbjct: 2  SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HM 36

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 60.6 bits (148), Expect = 6e-15
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC+ CGK F    +L TH   HTG KP   
Sbjct: 9  GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 40.2 bits (95), Expect = 9e-07
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C+ CG+ F  + DL  H    HT
Sbjct: 2  SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HT 36

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 60.6 bits (148), Expect = 7e-15
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCG 46
          GEKP KC+ CGK F  +S   +H R H+G KP      G
Sbjct: 9  GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.8 bits (94), Expect = 1e-06
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     +G KPF C+ CG+ F        H+ + H+
Sbjct: 2  SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HS 36

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 60.6 bits (148), Expect = 7e-15
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G++P++C  CGKAF   S+LI H R HTG KP   
Sbjct: 9  GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.4 bits (93), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG +P+ C  CG+AF+ K  L  H+ + HT  +P
Sbjct: 2  SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKP 40

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 8e-15
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G+K  KC  C K F+QSS+L  H R HTG KP   
Sbjct: 9  GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 6e-06
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +      G K F C+ C + F +   L  H+   HT
Sbjct: 2  SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HT 36

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 8e-15
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKPH+C+ CGK+FS +S LI H R HTG  P   
Sbjct: 9  GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP  C  CG++F     L  H+   HT   P
Sbjct: 2  SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGENP 40

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 8e-15
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C  CGK+FS S  L  H   HT  KP   
Sbjct: 9  GEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 5e-06
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +      G KP+ C  CG++F     L +H  T HT  +P
Sbjct: 2  SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREKP 40

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.6 bits (148), Expect = 9e-15
 Identities = 19/35 (54%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G KP+ C  CGKAFS  S+L TH   HTG KP   
Sbjct: 9  GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 4e-06
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C+ CG+AF     L  H+   HT
Sbjct: 2  SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HT 36

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 60.2 bits (147), Expect = 9e-15
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE P++C  CGK FS+   L++H + H+G    + 
Sbjct: 9  GENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 38.2 bits (90), Expect = 5e-06
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG  P+ C  CG+ F RK  L  H++T H+    
Sbjct: 2  SSGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQSG 40

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 9e-15
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+ C  CGKAF  S+ L+ H R HTG KP   
Sbjct: 9  GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     +G KP+ CD CG+AF    +L RH+   HT  +P
Sbjct: 2  SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEKP 40

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.3 bits (147), Expect = 9e-15
 Identities = 20/35 (57%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+ C  CGKAFS  S LI H R H+G KP   
Sbjct: 9  GEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 1e-06
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +      G KP+ C  CG+AF  K  L  H  T H+  +P
Sbjct: 2  SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKP 40

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 9e-15
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE P++C  CGKAFS+   LI+H R H G KP   
Sbjct: 9  GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 2e-06
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG  P+ C  CG+AF RK  L  H+ T H 
Sbjct: 2  SSGSSGTGENPYECHECGKAFSRKYQLISHQRT-HA 36

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 60.3 bits (147), Expect = 1e-14
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+ C+ CGK+F  +S L+ H R H+G KP   
Sbjct: 9  GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 37.9 bits (89), Expect = 8e-06
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C  CG++F+    L +H+   H+  +P
Sbjct: 2  SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKP 40

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 60.2 bits (147), Expect = 1e-14
 Identities = 21/35 (60%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP +C  CGK+FS SS L TH R HTG KP   
Sbjct: 9  GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 37.5 bits (88), Expect = 9e-06
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KPF C  CG++F     L  H+   HT
Sbjct: 2  SSGSSGTGEKPFECAECGKSFSISSQLATHQRI-HT 36

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 1e-14
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP KC+ CGK F+Q+S L +H R HTG KP   
Sbjct: 9  GEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 2e-06
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     +G KPF C+ CG+ F +   L  H+   HT
Sbjct: 2  SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HT 36

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 1e-14
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C  CGKAF+Q +NL  H R HTG KP   
Sbjct: 9  GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 4e-06
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C  CG+AF +K +L +H+   HT
Sbjct: 2  SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HT 36

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 1e-14
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C VCGKAFS   +L  H R H+G KP   
Sbjct: 9  GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 1e-05
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
               TG KP+ C +CG+AF  +  L  H+   H+
Sbjct: 3  SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HS 36

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 1e-14
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C +CGK+F++ S L  H + HTG KP   
Sbjct: 9  GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 7e-06
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C +CG++F +K  L  H++  HT  +P
Sbjct: 2  SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGEKP 40

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 1e-14
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
          GEKP+ C VCGKAF  S++L  H R HT        
Sbjct: 9  GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 6e-06
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
               TG KP++C++CG+AF     L +H    HT
Sbjct: 3  SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HT 36

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGKAF++ S L  H + HTG +    
Sbjct: 9  GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 1e-06
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C  CG+AF RK  L  H+++ HT  R 
Sbjct: 2  SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGERH 40

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.9 bits (146), Expect = 1e-14
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGKAF   S+L  H   H+G KP   
Sbjct: 9  GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 4e-06
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C+ CG+AF+ +  L  H+ T H+
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HS 36

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 19/35 (54%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+ C+ CGKAF   S L  H R HTG KP   
Sbjct: 9  GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 2e-06
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C+ CG+AF     L+ H+   HT
Sbjct: 2  SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HT 36

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 19/35 (54%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP KC  CGK FS+ S L  H + HTG KP   
Sbjct: 9  GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 39.4 bits (93), Expect = 1e-06
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KPF C  CG+ F R+  L  H +  HT
Sbjct: 2  SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HT 36

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE+ ++C  CGKAF++ S LI H R HTG KP   
Sbjct: 9  GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG + + C  CG+AF RK  L  H+   HT  +P
Sbjct: 2  SSGSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGEKP 40

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGK F+Q+S+L  H R HTG KP   
Sbjct: 9  GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 5e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     +G KP+ C+ CG+ F +   L  H    HT  +P
Sbjct: 2  SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGEKP 40

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 21/35 (60%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGKAF   SNL TH   HTG KP   
Sbjct: 9  GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C+ CG+AF+   +L  H+   HT  +P
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGEKP 40

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G KP+ C  CGKAF   S LI H+R HTG    + 
Sbjct: 9  GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 40.5 bits (96), Expect = 6e-07
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C+ CG+AF+ K  L  H  T HT
Sbjct: 2  SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HT 36

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE+PHKC  CGK+F QS++LI H R HTG KP   
Sbjct: 9  GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 8e-06
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG +P  C+ CG++F +   L +H+   HT  +P
Sbjct: 2  SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEKP 40

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C VC KAFS  ++L  H R H+G KP   
Sbjct: 9  GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 6e-06
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ CD+C +AF     L +H+   H+
Sbjct: 2  SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HS 36

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 59.8 bits (146), Expect = 1e-14
 Identities = 21/35 (60%), Positives = 27/35 (77%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C+ CGKAFSQ+++LI H R HTG KP   
Sbjct: 9  GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 36.7 bits (86), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C  CG+AF +   L +H+   HT  +P
Sbjct: 2  SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGEKP 40

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 2e-14
 Identities = 22/35 (62%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGKAFSQ+S L  H R HTG KP   
Sbjct: 9  GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 6e-06
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C+ CG+AF +   L RH+   HT  +P
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGEKP 40

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.9 bits (146), Expect = 2e-14
 Identities = 20/35 (57%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+ C  CGK FSQ S L  H R HTG KP   
Sbjct: 9  GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 2e-06
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     +G KP+ C+ CG+ F +K  L  H+ T HT
Sbjct: 2  SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HT 36

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G+KP +C  CGK+F    NL+TH R HTG K    
Sbjct: 9  GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 39.4 bits (93), Expect = 2e-06
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KPF C  CG++F+ K +L  H+   HT
Sbjct: 2  SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HT 36

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G  P+KC  C K+FS    L+ H R HT  KP   
Sbjct: 9  GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 3e-05
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +      G  P+ C  C ++F  K+ L  H+   HT  +P
Sbjct: 2  SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTREKP 40

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 20/35 (57%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G KP++C  CGKAFSQ+S L  H R HTG KP   
Sbjct: 9  GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 6e-06
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C+ CG+AF +   L RH+   HT  +P
Sbjct: 2  SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGEKP 40

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEK +KC  CGK FS++S L  H + HTG KP   
Sbjct: 9  GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 37.1 bits (87), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG K + C+ CG+ F R   L +H++  HT
Sbjct: 2  SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HT 36

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE+P KC  CGK F + S+L  H R H+  K    
Sbjct: 9  GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 1e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     +G +PF C+ CG+ F R+  L  H    H+  + 
Sbjct: 2  SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREKS 40

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGK+F+  S L  H + HTG +    
Sbjct: 9  GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 1e-06
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C  CG++F  K  LR H++  HT  R 
Sbjct: 2  SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGERH 40

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 16/35 (45%), Positives = 19/35 (54%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEK  KC+ C   FSQ+S+L  H   H G KP   
Sbjct: 9  GEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 4e-06
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +      G K + C  C   F +   LR H+   H   +P
Sbjct: 2  SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEKP 40

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C  CGK+F + S L  H R HTG  P   
Sbjct: 9  GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 5e-06
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C  CG++F +K  L  H+   HT   P
Sbjct: 2  SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGENP 40

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGK F+Q+S+L  H R HTG KP   
Sbjct: 9  GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 5e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C+ CG+ F +   L  H+   HT ++P
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGVKP 40

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
          GEKP+KC  CGK + +  +L  H R HTG K     
Sbjct: 9  GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     +G KP+ C  CG+ ++R++DL  H+   HT
Sbjct: 2  SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HT 36

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 19/35 (54%), Positives = 19/35 (54%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP  C  CGKAFS    L  H R HTG KP   
Sbjct: 9  GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KPF C  CG+AF   + L +H+   HT  +P
Sbjct: 2  SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGEKP 40

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 2e-14
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C+VC KAF+Q ++L  H + HTG KP   
Sbjct: 9  GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 4e-06
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C +C +AF +K  L +H++T HT
Sbjct: 2  SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HT 36

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 59.1 bits (144), Expect = 3e-14
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
          G++ ++CQ CGK+F Q  +L  H R HTG  P +
Sbjct: 7  GQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 34.9 bits (81), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          S   +G + + C  CG++F++K  L  H+   HT
Sbjct: 2  SSGSSGQRVYECQECGKSFRQKGSLTLHERI-HT 34

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 3e-14
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGKAF  +S+   H R HTG +P   
Sbjct: 9  GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 4e-06
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C  CG+AF       +H+   HT  RP
Sbjct: 2  SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQRP 40

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.0 bits (144), Expect = 3e-14
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGK F+Q+S+L+ H   HTG KP   
Sbjct: 9  GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 5e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C+ CG+ F +   L RH+   HT  +P
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEKP 40

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 59.1 bits (144), Expect = 3e-14
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
            K H+C  CG+ F+  S+L  H R HTG KP   
Sbjct: 9  STKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.9 bits (89), Expect = 6e-06
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     +  K   C  CGR F  K  L +H+   HT
Sbjct: 2  SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HT 36

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.0 bits (144), Expect = 3e-14
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGKAF + ++L  H R HTG++P   
Sbjct: 9  GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 6e-06
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     +G KP+ C  CG+AF R   L  H+   HT  RP
Sbjct: 2  SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYRP 40

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 3e-14
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G K  +C  CGKAF++ S L  H + HTG KP   
Sbjct: 9  GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 2e-06
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG K F C  CG+AF RK  L  H++  HT
Sbjct: 2  SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HT 36

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 3e-14
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE+ ++C  CGKAF Q S L  H R H G KP   
Sbjct: 9  GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 5e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG + + C  CG+AF +K  L  H+   H   +P
Sbjct: 2  SSGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEKP 40

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 59.1 bits (144), Expect = 3e-14
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
          GEKP++C  CGKAFSQ  +LI H R HTG  P +
Sbjct: 8  GEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.9 bits (94), Expect = 1e-06
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
           S    G KP+ CD CG+AF +K  L  H    HT   P
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSGP 39

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 3e-14
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G+KP++C+ C K F Q  +L  H R HTG +    
Sbjct: 9  GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     +G KP+ C  C + F +   L +HK   HT  R 
Sbjct: 2  SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERS 40

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.0 bits (144), Expect = 3e-14
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP KC+ CGKAF Q+ +L +H R HTG KP   
Sbjct: 9  GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 5e-06
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     +G KPF C  CG+AF++ + L  H    HT
Sbjct: 2  SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HT 36

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 3e-14
 Identities = 19/35 (54%), Positives = 21/35 (60%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGK F  +S L  H R HTG KP   
Sbjct: 9  GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 4e-06
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C+ CG+ F+    L RH+   HT
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HT 36

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 4e-14
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP +C+ CGK F+Q+S+L +H R HTG KP   
Sbjct: 9  GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 4e-06
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     +G KPF C+ CG+ F +   L  H+   HT  +P
Sbjct: 2  SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGEKP 40

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.6 bits (143), Expect = 4e-14
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGK F ++S+L  H   HTG KP   
Sbjct: 9  GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 5e-06
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C  CG+ F+R   L RH+   HT
Sbjct: 2  SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HT 36

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 4e-14
 Identities = 20/35 (57%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C  CGKAFS  S+L TH   HTG KP   
Sbjct: 9  GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 1e-05
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C+ CG+AF  +  L  H+   HT
Sbjct: 2  SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HT 36

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 5e-14
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP KC  CGK+++Q  +L  H R HTG KP   
Sbjct: 9  GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 3e-06
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KPF C  CG+++ ++V L +H+   HT  +P
Sbjct: 2  SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEKP 40

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 58.7 bits (143), Expect = 5e-14
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP++C  CGKAF   S LI H R H G    + 
Sbjct: 9  GEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 40.6 bits (96), Expect = 6e-07
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     +G KP+ C+ CG+AF  K  L  H+ T H  +  
Sbjct: 2  SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSG 40

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 5e-14
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGK F+Q+S+L  H   HTG KP   
Sbjct: 9  GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 3e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C+ CG+ F +   L RH+   HT  +P
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKP 40

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 5e-14
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          G+KP+KC  CGK F+Q+S+L  H   HTG KP   
Sbjct: 9  GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 3e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C+ CG+ F +   L RH+   HT  +P
Sbjct: 2  SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEKP 40

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 5e-14
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+ C  CGK+F Q S+L  H R HTG KP   
Sbjct: 9  GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 7e-07
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          +     TG KP+ C+ CG++F +K  L RH+   HT
Sbjct: 2  SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HT 36

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 6e-14
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+KC  CGK F+Q+S+L  H R HTG KP   
Sbjct: 9  GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 4e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C+ CG+ F +   L RH+   HT  +P
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGKP 40

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 57.9 bits (141), Expect = 7e-14
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
          GEKP+KC+ CG  F Q ++L  H   HTG  P +
Sbjct: 8  GEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.8 bits (94), Expect = 1e-06
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           S    G KP+ C+ CG  F +   LR H    HT
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HT 35

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.0 bits (141), Expect = 9e-14
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
          GEKP +C+ CG  FS S +L  H R H    P    
Sbjct: 9  GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.2 bits (100), Expect = 1e-07
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KPF C  CG  F     L +H  + H    P
Sbjct: 2  SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDP 40

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 57.5 bits (140), Expect = 1e-13
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
          GEKP+ C++CG  F     L +H R HTG  P +
Sbjct: 8  GEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 39.4 bits (93), Expect = 2e-06
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
           S    G KP+ C++CG  F+    L+ H    HT
Sbjct: 2  SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HT 35

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 57.2 bits (139), Expect = 2e-13
 Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFAC 42
          G+KP++C  CGKAF Q+++LI H R  HTG KP   
Sbjct: 9  GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 42.2 bits (100), Expect = 2e-07
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KP+ C  CG+AF +   L RH    HT  +P
Sbjct: 2  SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 2e-13
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GE+P+ C  CGK F + S+LI H ++H   K    
Sbjct: 9  GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 2e-06
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
               +G +P+ C+ CG+ F R   L  H +  H   + 
Sbjct: 3  SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKS 40

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 57.0 bits (138), Expect = 3e-13
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 8  GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKET 61
            + H C    CGK + +SS+L  H+R HTG KPF+C    C R F R  +L RH+ T
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 37.0 bits (86), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 6  WH-GEKPHKCQV--CGKAFSQSSNLITHSRKH 34
           H GEKP  C    C + F++S  L  H R H
Sbjct: 41 THTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 56.1 bits (136), Expect = 4e-13
 Identities = 16/36 (44%), Positives = 16/36 (44%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
          GEK H C  CGK F   S L  H R H G K     
Sbjct: 9  GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.6 bits (83), Expect = 5e-05
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
               +G K   CD CG+ F     LR H+   H 
Sbjct: 3  SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HM 36

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 55.4 bits (134), Expect = 8e-13
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
          GE P+ C  CGK+F+Q  +L  H R  +   P +
Sbjct: 8  GETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 36.1 bits (84), Expect = 3e-05
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
           S    G  P+ C  CG++F ++  L  H+ +  ++  P
Sbjct: 2  SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSGP 39

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 53.8 bits (130), Expect = 4e-12
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 6  WH-GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD 43
             GEKP  C    CG  FS+S  L  H R H+G KP    
Sbjct: 6  SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 41.1 bits (97), Expect = 4e-07
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 29 THSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMRP 68
          +     TG KPFAC    CG  F R  +L RH+ + H+ ++P
Sbjct: 2  SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKP 42

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 51.6 bits (123), Expect = 3e-11
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
          + C+ CG    + S L  H R HT  +P+ C  C  +F+ K +L +H +++   
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 37.8 bits (87), Expect = 1e-05
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
            +P+ C  C  +F    NL  H +     K
Sbjct: 26 DVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 50.4 bits (121), Expect = 8e-11
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          GEKP+ C  C + FS ++ L+ H + HT     + 
Sbjct: 7  GEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 34.6 bits (80), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          S   +G KP++C  C   F     L +H++  HT
Sbjct: 2  SSGSSGEKPYSCAECKETFSDNNRLVQHQKM-HT 34

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 48.8 bits (116), Expect = 3e-10
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC 45
            K   C++CGK F    +L  H   H+G KP++    
Sbjct: 9  TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.1 bits (83), Expect = 4e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
                K  AC++CG+ F+    L RHK + H+  +P
Sbjct: 5  SSGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKP 40

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 48.3 bits (116), Expect = 5e-10
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
            K + C  CGKAF++  +L  H + HT     + 
Sbjct: 9  DSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.6 bits (88), Expect = 1e-05
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
               T  K + C+ CG+AF R   L RH++  HT
Sbjct: 3  SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HT 36

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 48.1 bits (114), Expect = 1e-09
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          I  G++  KC  CG  F + S L          K   C+ C +   ++  L + +    +
Sbjct: 12 IHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGN-ES 63

Query: 65 EMRP 68
            + 
Sbjct: 64 GKKT 67

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 37.3 bits (86), Expect = 3e-05
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
           K   C+ C K   Q + L       +G K   
Sbjct: 37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 35.8 bits (82), Expect = 9e-05
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 24 SSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ 62
          S +     + H G +   C  CG  F R+  L R K   
Sbjct: 3  SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPM 41

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 44.9 bits (106), Expect = 1e-08
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 7  HGEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
           GE P KC  C + F+Q + L+ H R H  
Sbjct: 8  AGENPFKCSKCDRVFTQRNYLVQHERTHAR 37

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 34.4 bits (79), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP 70
          +      G  PF C  C R F ++  L +H+ T   +  P  
Sbjct: 2  SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 45.3 bits (106), Expect = 6e-08
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 2/58 (3%)

Query: 7   HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
                  C +C   FS S +L  H R         C +C + F        H   +H 
Sbjct: 70  KAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHN 125

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 43.2 bits (101), Expect = 3e-07
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 22 SQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH-KETQHTEMRP 68
          S  S+   +    TG   F C  C  A+   V+L  H  ET H     
Sbjct: 2  SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN 49

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 41.3 bits (96), Expect = 2e-06
 Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 34/98 (34%)

Query: 5   IWHGEKPHKCQVCGKAFSQSSNLITH---------------------------------S 31
           I+ G    +C+ C  A+     L  H                                  
Sbjct: 13  IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME 72

Query: 32  RKHTGFKPFACDLCGRAFQRKVDLRRH-KETQHTEMRP 68
            K    K   C  CG +F+   DL  H  +T+H +   
Sbjct: 73  GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 40.8 bits (96), Expect = 4e-07
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
           +R  TG KPF C  C R+F R   L  H++ 
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 38.9 bits (91), Expect = 3e-06
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKH 34
          G KP +C  C ++FS+S +L  H ++H
Sbjct: 8  GIKPFQCPDCDRSFSRSDHLALHRKRH 34

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 41.9 bits (98), Expect = 6e-07
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
          C   GK+F     L+ H R HTG K    
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 40.0 bits (93), Expect = 3e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 5  IWHGEKPHKCQVCGKAFSQSSNLITH-SRKHTGFKPFA--------CDLCGRAFQRKVDL 55
          I   +     + C + FS    L+TH + +H G             C   G++F+ K  L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 56 RRH 58
            H
Sbjct: 79 VNH 81

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens} Length = 29

 Score = 37.4 bits (86), Expect = 9e-06
 Identities = 18/29 (62%), Positives = 24/29 (82%)

Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
          KP +C +CGKAF+Q+S+LI H R+HTG K
Sbjct: 1  KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} Length = 37

 Score = 36.2 bits (84), Expect = 3e-05
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 9  EKPHKCQV--CGKAFSQSSNLITHSRKHTG 36
          +K H C +  CGK + ++S+L  H R HTG
Sbjct: 6  KKQHICHIQGCGKVYGKTSHLRAHLRWHTG 35

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31

 Score = 36.0 bits (84), Expect = 3e-05
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 10 KPHKCQV--CGKAFSQSSNLITHSRKHTGFK 38
          +P  C    CGK F++S  L  H R HTG K
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 38.3 bits (88), Expect = 5e-05
 Identities = 6/56 (10%), Positives = 14/56 (25%)

Query: 10  KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
                +      S+    +      +    + C +C       +DL  H  +    
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 7   HGEKPHKCQVCGKAFSQSSNLITHSRKH 34
                ++C VC        +L  H   H
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASH 203

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 36.8 bits (84), Expect = 7e-05
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
           C  C   F        H  K    K   C  C R F+    + RH+   H +
Sbjct: 44 VCPYCSLRFFSPELKQEHESKCEY-KKLTCLECMRTFKSSFSIWRHQVEVHNQ 95

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.2 bits (80), Expect = 1e-04
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
          EK H+C+ CG+ F Q  +LI H   H G K
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 34.2 bits (79), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
          +   C+VC +AF++  +L  H R HT  K
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 32.9 bits (74), Expect = 8e-04
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
           +   +CQ CGK F  SS LI H   H G
Sbjct: 9  AKTTSECQECGKIFRHSSLLIEHQALHAG 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.9
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.87
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.85
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.85
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.85
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.84
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.84
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.83
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.83
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.83
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.82
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.82
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.81
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.81
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.81
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.81
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.78
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.78
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.78
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.77
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.76
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.75
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.75
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.75
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.75
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.75
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.74
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.74
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.73
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.72
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.72
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.72
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.72
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.72
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.71
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.7
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.69
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.69
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.69
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.68
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.68
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.68
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.67
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.67
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.64
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.64
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.62
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.62
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.62
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.62
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.61
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.61
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.61
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.61
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.61
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.61
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.61
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.61
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.61
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.61
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.61
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.6
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.6
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.6
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.6
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.6
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.6
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.6
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.6
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.6
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.6
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.6
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.6
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.6
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.6
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.59
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.59
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.59
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.59
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.59
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.59
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.59
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.59
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.59
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.59
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.58
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.58
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.58
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.58
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.57
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.57
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.57
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.57
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.57
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.56
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.56
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.55
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.55
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.55
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.55
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.55
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.55
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.55
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.54
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.54
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.54
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.54
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.54
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.54
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.54
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.54
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.53
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.53
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.53
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.53
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.53
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.53
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.53
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.53
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.53
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.53
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.53
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.53
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.53
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.53
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.53
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.53
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.53
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.53
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.53
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.53
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.53
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.53
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.53
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.53
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.52
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.52
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.52
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.52
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.52
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.52
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.52
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.52
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.52
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.52
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.52
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.52
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.52
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.52
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.52
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.52
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.52
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.52
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.52
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.52
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.51
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.51
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.51
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.51
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.51
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.51
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.51
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.51
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.51
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.51
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.51
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.51
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.51
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.51
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.51
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.51
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.51
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.51
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.51
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.51
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.51
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.51
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.51
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.51
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.51
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.51
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.51
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.5
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.5
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.5
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.5
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.5
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.5
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.5
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.5
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.5
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.5
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.5
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.5
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.5
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.5
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.5
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.5
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.5
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.5
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.5
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.49
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.49
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.49
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.49
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.49
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.49
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.49
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.48
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.48
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.48
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.48
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.48
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.48
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.48
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.47
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.46
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.46
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.46
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.46
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.45
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.45
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.45
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.44
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.44
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.43
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.42
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.4
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.36
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.35
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.33
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.32
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.31
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.3
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.29
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.29
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.28
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.27
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.27
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.26
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.26
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.26
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.26
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.26
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.25
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.24
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.23
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.23
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.21
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.2
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.2
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.2
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.2
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.19
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.18
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.17
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.17
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.16
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.12
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.12
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.12
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.12
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.12
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.1
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	99.1
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.1
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.1
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.1
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.09
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.09
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.09
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.09
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.09
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.08
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.07
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.05
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	99.05
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.04
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.03
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.02
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.02
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.01
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.0
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.99
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.97
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.97
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.96
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.96
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.93
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.93
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.93
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.91
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.9
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.88
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.88
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.86
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.86
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.85
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.84
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.83
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.82
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.82
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.82
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.81
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.81
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.81
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.28
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.78
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.77
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.77
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.77
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.77
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.76
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.23
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.75
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.74
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.73
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.72
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.18
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.71
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.71
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.67
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.66
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.66
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.06
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.62
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.05
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.6
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.58
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.52
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.89
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.44
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.41
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.37
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.8
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.72
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.02
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.88
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.72
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.92
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.83
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	94.67
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	94.57
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	93.64
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	93.06
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	92.44
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	92.28
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	92.14
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	91.82
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	90.96
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	90.4
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.35
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	90.3
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	88.93
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	88.36
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	88.15
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	87.52
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	86.43
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	85.55
2ct5_A	73	Zinc finger BED domain containing protein 1; DREF	84.81
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	84.28
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	84.17
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	83.89

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.90  E-value=1.9e-24  Score=87.21  Aligned_cols=59  Identities=34%  Similarity=0.839  Sum_probs=54.8

Q ss_pred             CCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCC
Q psy2647           8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus         8 ~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      .++||.|..|++.|.....|..|+++|++++||.|..|++.|...+.|..|+++ |+++.
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~-Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV-HQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG-GSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc-cCCCC
Confidence            368999999999999999999999999999999999999999999999999999 66553

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.87  E-value=2.1e-23  Score=95.51  Aligned_cols=67  Identities=24%  Similarity=0.365  Sum_probs=44.0

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      .++.|+++|.|..|++.|.....|..|++.|+++++|.|..|++.|.....|..|+++ |.+++|+.|
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C   81 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRYQC   81 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHH-HHTCCCEEE
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccc-cCCCccccC
Confidence            4456666666666666666666666666666666666666666666666666666665 555666554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.85  E-value=3.1e-21  Score=80.54  Aligned_cols=65  Identities=37%  Similarity=0.829  Sum_probs=59.8

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPV   69 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~   69 (72)
                      ..+.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHH-HCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHh-cCCCCCC
Confidence            3456789999999999999999999999999999999999999999999999999998 7788876

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.85  E-value=1.7e-21  Score=81.90  Aligned_cols=66  Identities=42%  Similarity=0.757  Sum_probs=61.7

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      .+.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGG-SCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHH-hCCCCCCCC
Confidence            355678999999999999999999999999999999999999999999999999998 888999987

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.85  E-value=4.3e-21  Score=80.64  Aligned_cols=69  Identities=35%  Similarity=0.575  Sum_probs=62.6

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHH-HhcCC-CCccCCcchhhcCChHHHHHHHHHhccCCCCCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSR-KHTGF-KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP   70 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~-~~~~~-~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~   70 (72)
                      ++++|+++++|.|..|++.|.....|..|+. .|.++ ++|.|..|++.|.....|..|++.+|..+.|..
T Consensus         6 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~s   76 (77)
T 2ct1_A            6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS   76 (77)
T ss_dssp             CCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCCC
T ss_pred             cccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            4678999999999999999999999999997 57764 799999999999999999999999899888753

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.84  E-value=6.2e-21  Score=78.90  Aligned_cols=66  Identities=24%  Similarity=0.450  Sum_probs=60.0

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      .++++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++|.+.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~p~p~   68 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDMSGPS   68 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHH-HHSSSCCSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHH-HhCCCCCCC
Confidence            467889999999999999999999999999999999999999999999999999998 556666553

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.84  E-value=6.7e-21  Score=79.18  Aligned_cols=63  Identities=48%  Similarity=0.834  Sum_probs=58.8

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccC
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      +++|+++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|+++
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            567899999999999999999999999999999999999999999999999999999995544

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.9e-21  Score=85.60  Aligned_cols=66  Identities=18%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHH-Hh---cCCCCccCCcchhhcCChHHHHHH-HHHhccCCCCCCCC
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSR-KH---TGFKPFACDLCGRAFQRKVDLRRH-KETQHTEMRPVPVT   72 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~-~~---~~~~~~~c~~c~~~~~~~~~l~~H-~~~~~~~~~p~~~~   72 (72)
                      ..|+++|.|..|++.|.....|..|++ .|   .+++||.|..|++.|...+.|..| +++ |.+++||.|+
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~-Htgekpy~C~   83 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY-HPGEENFKLT   83 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHT-STTCCCEEEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh-cCCCCCeeCC
Confidence            357899999999999999999999997 48   568899999999999999999999 787 8999999873

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=5.6e-21  Score=78.19  Aligned_cols=63  Identities=27%  Similarity=0.601  Sum_probs=57.1

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHH-h-cCCCCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRK-H-TGFKPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~-~-~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      |+.+|+++++|.|..|++.|.....|..|+.. | .++++|.|..|++.|.....|..|++.+|+
T Consensus         1 i~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             --CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            46789999999999999999999999999998 7 588999999999999999999999998765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=80.64  Aligned_cols=64  Identities=25%  Similarity=0.475  Sum_probs=57.1

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      .++.+.++|.|+.|++.|.....|..|++.|++++||.|..|++.|.....|..|++..|+++.
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            3456678899999999999999999999999999999999999999999999999765476553

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.82  E-value=7.7e-21  Score=87.03  Aligned_cols=64  Identities=28%  Similarity=0.494  Sum_probs=59.6

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      +..+|+++++|.|..|++.|.....|..|++.|++++||.|..|++.|.....|..|++++|++
T Consensus        41 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           41 HFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             HHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             HHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            3567899999999999999999999999999999999999999999999999999999996654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=2.9e-20  Score=78.22  Aligned_cols=66  Identities=27%  Similarity=0.600  Sum_probs=60.2

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcC---CCCccCCcchhhcCChHHHHHHHHHhccCCCCCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTG---FKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP   70 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~---~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~   70 (72)
                      .|+++++|.|..|++.|.....|..|++.|.+   +++|.|..|++.|.....|..|++.+|.+++|..
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            37889999999999999999999999999885   7899999999999999999999977788887654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=8.5e-21  Score=82.97  Aligned_cols=67  Identities=18%  Similarity=0.346  Sum_probs=60.1

Q ss_pred             cccccCCCcccCcccchhcc-CcHHHHHhHHHhcC-CCCccCCcchhhcCChHHHHHHHHHhccCCCCCC
Q psy2647           3 SNIWHGEKPHKCQVCGKAFS-QSSNLITHSRKHTG-FKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP   70 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~-~~~~l~~~~~~~~~-~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~   70 (72)
                      +++|.++++|.|..|++.|. ....|..|++.|.+ +++|.|..|++.|.....|..|+++ |.+++|..
T Consensus        16 ~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~-h~~~kp~~   84 (98)
T 2gqj_A           16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA-EHSAKPSD   84 (98)
T ss_dssp             HHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHH-HSCSCSSC
T ss_pred             HHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHH-HcCCCCCC
Confidence            45788899999999999999 99999999999988 8899999999999999999999998 55556543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=2.5e-20  Score=81.30  Aligned_cols=66  Identities=17%  Similarity=0.338  Sum_probs=58.2

Q ss_pred             ccccCCCcccCcccchhc-cCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHH-HHHhccCCCCCCC
Q psy2647           4 NIWHGEKPHKCQVCGKAF-SQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH-KETQHTEMRPVPV   71 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~-~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H-~~~~~~~~~p~~~   71 (72)
                      .++.++++|.|..|++.| .....|..|++.| ++++|.|..|++.|.....|..| +++ |+++..++.
T Consensus        27 ~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~-H~~~p~~~~   94 (96)
T 2ctd_A           27 LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMAN-HNSLPSGPS   94 (96)
T ss_dssp             HHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHH-TCCCSSCSC
T ss_pred             HHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHh-cCCCCCCCC
Confidence            345678899999999999 9999999999999 99999999999999999999999 777 676655554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.81  E-value=5.4e-20  Score=73.29  Aligned_cols=56  Identities=41%  Similarity=0.779  Sum_probs=50.4

Q ss_pred             CCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhc
Q psy2647           8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus         8 ~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      |+++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.||
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            46799999999999999999999999999999999999999999999999999865

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=1.6e-19  Score=76.98  Aligned_cols=69  Identities=29%  Similarity=0.530  Sum_probs=61.5

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCC----CCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF----KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~----~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ++++|+++++|.|..|++.|.....|..|+..+...    ++|.|..|++.|.....|..|+++ |.+++++.|
T Consensus         6 H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~~~   78 (86)
T 1x6h_A            6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEG   78 (86)
T ss_dssp             CSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHH-CCCCCSCCC
T ss_pred             ccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHH-ccCCCCccc
Confidence            467899999999999999999999999999876554    789999999999999999999998 677777765

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=1.5e-19  Score=79.73  Aligned_cols=67  Identities=31%  Similarity=0.621  Sum_probs=51.3

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCC
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP   70 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~   70 (72)
                      .++|.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++|+.
T Consensus        37 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~  103 (106)
T 2ee8_A           37 ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL-HMQTSSPT  103 (106)
T ss_dssp             HHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHH-TTSCCCCC
T ss_pred             HHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHH-hCCCCCCc
Confidence            34566777788888888888888888888888777788888888888888888888887 55666654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=3.2e-19  Score=77.42  Aligned_cols=62  Identities=32%  Similarity=0.558  Sum_probs=40.1

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      .+.|.++++|.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++|++
T Consensus        28 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           28 MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             GGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             HHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            34555666666666666666666666666666666666666666666666666666666333

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.78  E-value=3.9e-19  Score=70.76  Aligned_cols=56  Identities=29%  Similarity=0.614  Sum_probs=52.0

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      ||.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|+.+.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            58899999999999999999999999999999999999999999999999855543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=9.4e-19  Score=73.61  Aligned_cols=65  Identities=31%  Similarity=0.647  Sum_probs=59.8

Q ss_pred             cCCCcccCcc--cchhccCcHHHHHhHH-HhcCCCCccCCc--chhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           7 HGEKPHKCQV--CGKAFSQSSNLITHSR-KHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         7 ~~~~~~~c~~--c~~~~~~~~~l~~~~~-~~~~~~~~~c~~--c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +++++|.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.....|..|+++ |.+++||.|+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   72 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICE   72 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHH-HHTSCCCSCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHH-hCCCCCeeCC
Confidence            5678899987  9999999999999999 699999999998  99999999999999998 7788999884

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.77  E-value=1.3e-19  Score=84.33  Aligned_cols=69  Identities=42%  Similarity=0.840  Sum_probs=57.6

Q ss_pred             cccccCCCcccCcc--cchhccCcHHHHHhHHHhcCCCCccCCc--chhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           3 SNIWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         3 ~~~~~~~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .++|.++++|.|..  |++.|.....|..|++.|.++++|.|..  |++.|.....|..|+++ |.+++||.|+
T Consensus        82 ~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~~c~  154 (155)
T 2rpc_A           82 IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPSS  154 (155)
T ss_dssp             THHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTT-TTSCCCSCSC
T ss_pred             HHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHH-hcCCCCCCCC
Confidence            45677788888887  8888888888888888888888888886  88888888888888887 7778888875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=6.9e-19  Score=78.03  Aligned_cols=66  Identities=33%  Similarity=0.701  Sum_probs=51.1

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ..|+++++|.| .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C   68 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKPYEC   68 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT-TCCCCCEEC
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHH-cCCCCCeeC
Confidence            35677778888 7888888888888888888777788888888888888888888777 666677766

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.1e-18  Score=75.64  Aligned_cols=66  Identities=41%  Similarity=0.778  Sum_probs=61.3

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ..++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|++. |.+++||.|.
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~   68 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQ   68 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHH-SCCCCCEECS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHH-hCCCCCccCC
Confidence            46788999999999999999999999999999999999999999999999999998 7888888874

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.76  E-value=4.2e-19  Score=76.22  Aligned_cols=58  Identities=50%  Similarity=1.009  Sum_probs=41.1

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ++|.++++|.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++
T Consensus        27 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   84 (90)
T 1a1h_A           27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI   84 (90)
T ss_dssp             HHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             HHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            3455666777777777777777777777777777777777777777777777777776

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.75  E-value=7.9e-19  Score=74.18  Aligned_cols=59  Identities=39%  Similarity=0.770  Sum_probs=47.1

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHh
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      ..|.++++|.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++|
T Consensus        22 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           22 LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             HHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             HHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            45667778888888888888888888888888888888888888888888888888774

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.75  E-value=3.6e-19  Score=85.13  Aligned_cols=66  Identities=45%  Similarity=0.868  Sum_probs=34.9

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      .|.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus        99 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~C  164 (190)
T 2i13_A           99 THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT-HTGEKPYKC  164 (190)
T ss_dssp             HHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH-HHCCCCEEC
T ss_pred             hcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHh-cCCCCCeEC
Confidence            344455555555555555555555555555555555555555555555555555554 444445444

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.75  E-value=6.3e-19  Score=78.90  Aligned_cols=68  Identities=44%  Similarity=0.838  Sum_probs=56.2

Q ss_pred             cccccCCCcccCc--ccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           3 SNIWHGEKPHKCQ--VCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         3 ~~~~~~~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      .+.|.++++|.|.  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus        28 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C   97 (119)
T 2jp9_A           28 SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSC   97 (119)
T ss_dssp             HHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH-HHTCCCEEC
T ss_pred             HHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHH-hcCCCCeeC
Confidence            3456777888888  6888888888888888888888888888888888888888888887 667777776

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=3.9e-18  Score=73.81  Aligned_cols=65  Identities=31%  Similarity=0.665  Sum_probs=40.8

Q ss_pred             cCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccC-CCCCCC
Q psy2647           7 HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE-MRPVPV   71 (72)
Q Consensus         7 ~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~-~~p~~~   71 (72)
                      +++++|.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|++.|+.+ ++||.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C   68 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC   68 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceEC
Confidence            34566666666666666666666666666666666666666666666666666663333 256555

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.6e-18  Score=71.38  Aligned_cols=60  Identities=38%  Similarity=0.728  Sum_probs=55.9

Q ss_pred             ccccccCCCcccCc--ccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647           2 ISNIWHGEKPHKCQ--VCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus         2 ~~~~~~~~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      +..++.++++|.|.  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++
T Consensus        10 ~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             TSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             hhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            45678889999997  5999999999999999999999999999999999999999999987

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=7.8e-18  Score=74.15  Aligned_cols=65  Identities=37%  Similarity=0.836  Sum_probs=60.4

Q ss_pred             cCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           7 HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         7 ~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .++++|.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~   77 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKPFKCQ   77 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGG-SCCCCTTSCS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHH-hCCCCCeECC
Confidence            4567899999999999999999999999999999999999999999999999998 7888999884

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.74  E-value=1.2e-18  Score=83.35  Aligned_cols=65  Identities=48%  Similarity=0.880  Sum_probs=43.9

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPV   69 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~   69 (72)
                      ++|+++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++||
T Consensus       126 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~k~~  190 (190)
T 2i13_A          126 RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT-HTGKKTS  190 (190)
T ss_dssp             HHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTT-C------
T ss_pred             HHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHh-cCCCCCC
Confidence            4466677777777777777777777777777777777777777777777777777776 5566654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.74  E-value=3.3e-18  Score=73.37  Aligned_cols=64  Identities=44%  Similarity=0.781  Sum_probs=57.6

Q ss_pred             CCCcccCc--ccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           8 GEKPHKCQ--VCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         8 ~~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |+++|.|.  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~   66 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD   66 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH-HHCCCCEECT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHH-cCCCCCccCC
Confidence            46789998  6999999999999999999999999999999999999999999998 7778888774

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=71.96  Aligned_cols=61  Identities=28%  Similarity=0.458  Sum_probs=56.2

Q ss_pred             cccCcccchhccCcHHHHHhHHH-hcCCCC--------ccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRK-HTGFKP--------FACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~-~~~~~~--------~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .+.|..|++.|.....|..|++. |.++++        |.|..|++.|.....|..|+++ |.+++||.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV-HTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHH-HHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHh-cCCCCCCCCC
Confidence            46799999999999999999998 888877        8999999999999999999998 8889999985

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=6.8e-18  Score=67.74  Aligned_cols=57  Identities=40%  Similarity=0.788  Sum_probs=51.3

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      ++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|++..|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            479999999999999999999999999999999999999999999999974335544

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.72  E-value=7.2e-18  Score=71.21  Aligned_cols=61  Identities=36%  Similarity=0.823  Sum_probs=56.7

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ||.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|++. |.+++|+.|.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~   61 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKCQ   61 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHH-HHTCCCEECT
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHH-hcCCCCCcCC
Confidence            588999999999999999999999999999999999999999999999998 7778888774

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.72  E-value=9.8e-18  Score=75.53  Aligned_cols=63  Identities=46%  Similarity=0.837  Sum_probs=43.4

Q ss_pred             CCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc--chhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         8 ~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.++|.|..|++.|.....|..|+..|.++++|.|..  |++.|.....|..|+++ |.+++||.|
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C   95 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVC   95 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHH-HHCCCCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHH-hCCCCceEC
Confidence            5566777777777777777777777777667777764  77777777777777776 555666665

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=5.4e-18  Score=76.26  Aligned_cols=65  Identities=34%  Similarity=0.750  Sum_probs=31.5

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHHH---hcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSRK---HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~~---~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      |.++++|.|..|++.|.....|..|+..   +.++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus        30 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C   97 (124)
T 2dlq_A           30 HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKC   97 (124)
T ss_dssp             HSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHH-HSSSCSEEC
T ss_pred             CCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHH-cCCCCCccC
Confidence            4444455555555555555555555442   2334445555555555555555555544 444444444

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=7.5e-18  Score=74.41  Aligned_cols=62  Identities=21%  Similarity=0.439  Sum_probs=43.0

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ++|.|..|++.|.....|..|+. |.++++|.|..|++.|.....|..|++..|.+++||.++
T Consensus        41 ~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           41 NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            35566666666666666666664 667777777777777777777777776447777777654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=2.1e-17  Score=71.48  Aligned_cols=64  Identities=36%  Similarity=0.720  Sum_probs=57.2

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCC--CCccCCcchhhcCChHHHHHHHHHhccCC
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF--KPFACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~--~~~~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      ..+|.++++|.|..|++.|.....|..|++.|.++  ++|.|..|++.|.....|..|++..|.++
T Consensus        27 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           27 KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             HHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             HHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcCCC
Confidence            45678889999999999999999999999999886  89999999999999999999987436654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=9.9e-18  Score=68.53  Aligned_cols=61  Identities=23%  Similarity=0.402  Sum_probs=55.3

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC-cchhhcCChHHHHHHHHHhccCCCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD-LCGRAFQRKVDLRRHKETQHTEMRP   68 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~-~c~~~~~~~~~l~~H~~~~~~~~~p   68 (72)
                      ...+.++|.|..|++.|. ...|..|++. .+++||.|. .|++.|...+.|..|+++ |...+|
T Consensus         4 ~~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~-hc~~~~   65 (66)
T 2eod_A            4 GSSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD-SCNTAL   65 (66)
T ss_dssp             SCCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT-TSSSCC
T ss_pred             ccCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh-hcccCc
Confidence            346788999999999999 9999999999 999999999 999999999999999998 776665

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.5e-17  Score=73.72  Aligned_cols=62  Identities=32%  Similarity=0.758  Sum_probs=57.5

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      .+.|.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.++.
T Consensus        29 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           29 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             HHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             HHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHccc
Confidence            45678889999999999999999999999999999999999999999999999999998654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.70  E-value=3.5e-17  Score=70.11  Aligned_cols=56  Identities=52%  Similarity=1.038  Sum_probs=52.1

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      +++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.++.
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999999999999999999999998663

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=2e-18  Score=77.03  Aligned_cols=69  Identities=16%  Similarity=0.289  Sum_probs=38.3

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHH--hcCCCCc-cCCcchhhc--CChHHHHHHHHHhccCCCCCCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRK--HTGFKPF-ACDLCGRAF--QRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~--~~~~~~~-~c~~c~~~~--~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.++|+++++|.|..|++.|.....|..|++.  +.+.+++ .|..|++.|  .....|..|+++ |.+++||.|
T Consensus        10 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~~~~~~C   83 (115)
T 2dmi_A           10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK-EDAQKVLKC   83 (115)
T ss_dssp             CCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCS-CCCCSSCBC
T ss_pred             heeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhc-cCCCcceEC
Confidence            45667777778888888777777777777776  4333322 244444444  333444444443 333444433

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=8.1e-17  Score=72.40  Aligned_cols=62  Identities=31%  Similarity=0.578  Sum_probs=57.3

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCC
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      +.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|++..|+++.
T Consensus        61 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            56788999999999999999999999999999999999999999999999999986677664

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.5e-17  Score=77.30  Aligned_cols=67  Identities=43%  Similarity=0.835  Sum_probs=44.6

Q ss_pred             ccccCCCcccCcc--cchhccCcHHHHHhHHHhcCCCCccCCc--chhhcCChHHHHHHH-HHhccCCCCCCC
Q psy2647           4 NIWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHK-ETQHTEMRPVPV   71 (72)
Q Consensus         4 ~~~~~~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~H~-~~~~~~~~p~~~   71 (72)
                      +.|.++++|.|..  |++.|.....|..|++.|.++++|.|..  |++.|.....|..|+ +. |.+++||.|
T Consensus        60 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~-H~~~~~~~C  131 (155)
T 2gli_A           60 RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT-HSNEKPYVC  131 (155)
T ss_dssp             HHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHT-TCSCCCEEC
T ss_pred             HhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHh-cCCCCCeeC
Confidence            3455666677763  7777777777777777666666777766  777777777777776 44 666666655

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.68  E-value=5.5e-17  Score=70.69  Aligned_cols=62  Identities=39%  Similarity=0.747  Sum_probs=39.9

Q ss_pred             CCcccCcc--cchhccCcHHHHHhHHHhcCCCCccCC--cchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         9 ~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      .++|.|..  |++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+++ |.+++||.|
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C   78 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQC   78 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHH-HTSCCSCBC
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHH-hCCCCCeEC
Confidence            34566664  666666666666666666666666664  466666666666666665 555666655

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.68  E-value=2.4e-17  Score=74.80  Aligned_cols=59  Identities=22%  Similarity=0.330  Sum_probs=54.0

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      .|+++++|.|..|++.|.....|..|++.|  ++||.|..|++.|.....|..|+++|++.
T Consensus        68 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            366789999999999999999999999998  78999999999999999999999996653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=2.5e-17  Score=72.74  Aligned_cols=66  Identities=15%  Similarity=0.296  Sum_probs=59.3

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ...|.++++|.|..|++.|.....|..|++.|.  ++|.|..|++.|.....|..|+ . |.+++||.|.
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~-~-H~~~~~~~C~   73 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHE-S-KCEYKKLTCL   73 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHH-H-HCSTGGGEEG
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHH-H-cCCCCCccCc
Confidence            456888999999999999999999999999984  6899999999999999999999 4 7888888763

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.67  E-value=1.1e-16  Score=71.56  Aligned_cols=65  Identities=42%  Similarity=0.815  Sum_probs=59.6

Q ss_pred             cCCCcccCcc--cchhccCcHHHHHhHHHhcCCCCccCC--cchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           7 HGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         7 ~~~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +++++|.|..  |++.|.....|..|++.|.++++|.|.  .|++.|.....|..|++. |.+++|+.|.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~   70 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCK   70 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHH-HHCCCCEECT
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHH-cCCCCCccCC
Confidence            5678999987  999999999999999999999999999  799999999999999998 7778888773

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.67  E-value=4.5e-17  Score=69.68  Aligned_cols=57  Identities=46%  Similarity=0.858  Sum_probs=27.7

Q ss_pred             cccCCCcccCc--ccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647           5 IWHGEKPHKCQ--VCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus         5 ~~~~~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      .|.++++|.|.  .|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++
T Consensus        29 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHHHHh
Confidence            34444444553  3555555555555555444444455555555555555555544443

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.67  E-value=7.7e-17  Score=72.59  Aligned_cols=67  Identities=39%  Similarity=0.729  Sum_probs=56.6

Q ss_pred             ccccccCCCcccCcc--cchhccCcHHHHHhHHHhcCCCCccCC--cchhhcCChHHHHHHHHHhccCCCCC
Q psy2647           2 ISNIWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMRPV   69 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~~p~   69 (72)
                      +...|.++++|.|..  |++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+++ |.+++++
T Consensus        53 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~-H~~~k~~  123 (124)
T 1ubd_C           53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT-HAKAKNN  123 (124)
T ss_dssp             HGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHH-HC-----
T ss_pred             HHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHH-HcccccC
Confidence            356788899999975  999999999999999999999999996  599999999999999999 6666653

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.64  E-value=2.4e-16  Score=73.29  Aligned_cols=60  Identities=42%  Similarity=0.807  Sum_probs=51.9

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCc--chhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +.|..|++.|.....|..|++.|.++++|.|..  |++.|.....|..|+++ |.+++||.|.
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~-h~~~~~~~C~  124 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPFKCE  124 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTT-TCSSCSBCCS
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHh-hCCCCCccCC
Confidence            688889999988889999998888888899987  99999999999999887 7778888773

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.2e-18  Score=72.27  Aligned_cols=63  Identities=21%  Similarity=0.419  Sum_probs=56.6

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +.++|.++++|.|..|++.|.....|..       +++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         9 H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~-H~~~~~~~C~   71 (73)
T 2ctu_A            9 RQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGN-ESGKKTSGPS   71 (73)
T ss_dssp             CCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSC-CCCCCCSSCC
T ss_pred             HHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHh-hcCCCCCCCC
Confidence            5678899999999999999998887765       6799999999999999999999998 8888999884

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.62  E-value=4.4e-16  Score=66.55  Aligned_cols=63  Identities=44%  Similarity=0.851  Sum_probs=57.3

Q ss_pred             CCcccCcc--cchhccCcHHHHHhHHHhcCCCCccCC--cchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647           9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus         9 ~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ..+|.|..  |++.|.....|..|+..|.++++|.|.  .|++.|.....|..|++. |.+++||.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~   69 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQ   69 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHH-HHCCCCEECS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHH-cCCCCCccCC
Confidence            45789999  999999999999999999999999997  599999999999999998 7778888774

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=5.7e-16  Score=58.59  Aligned_cols=43  Identities=40%  Similarity=0.555  Sum_probs=31.4

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4567777777777777777777777777777777777777655

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.62  E-value=5e-16  Score=74.24  Aligned_cols=65  Identities=31%  Similarity=0.625  Sum_probs=27.6

Q ss_pred             ccCCCcccCc--ccchhccCcHHHHHhH-HHh-cCCCCccC--CcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647           6 WHGEKPHKCQ--VCGKAFSQSSNLITHS-RKH-TGFKPFAC--DLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus         6 ~~~~~~~~c~--~c~~~~~~~~~l~~~~-~~~-~~~~~~~c--~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      |.++++|.|.  .|++.|.....|..|+ ..| .+..+|.|  ..|++.|.....|..|+++ |.+++||.|
T Consensus        67 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~~C  137 (190)
T 1tf6_A           67 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYEC  137 (190)
T ss_dssp             TTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGG-GSSSCSSBC
T ss_pred             ccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHH-hCCCCCccC
Confidence            3344444444  3444444444444444 223 22334444  4444444444444444444 344444443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=2e-15  Score=65.67  Aligned_cols=60  Identities=43%  Similarity=0.787  Sum_probs=55.6

Q ss_pred             cccccCCCcccCc--ccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHh
Q psy2647           3 SNIWHGEKPHKCQ--VCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus         3 ~~~~~~~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      .+.|.++++|.|.  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|
T Consensus        37 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           37 LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             HHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             HHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            4567888999996  69999999999999999999999999999999999999999999984

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.62  E-value=8.8e-16  Score=58.58  Aligned_cols=44  Identities=43%  Similarity=0.610  Sum_probs=29.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34566666777777777777777777777766766667766654

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=9e-16  Score=58.50  Aligned_cols=44  Identities=48%  Similarity=0.742  Sum_probs=29.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566666677777777777777777777766766667766654

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=9.3e-16  Score=58.49  Aligned_cols=44  Identities=41%  Similarity=0.598  Sum_probs=32.2

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            45667777777777777777777777777777777777777665

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=9.4e-16  Score=58.49  Aligned_cols=44  Identities=34%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            35567777777777777777777777777777777777777665

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.61  E-value=2.7e-16  Score=73.03  Aligned_cols=62  Identities=39%  Similarity=0.752  Sum_probs=56.8

Q ss_pred             cccccCCCcccCcc--cchhccCcHHHHHhH-HHhcCCCCccCCc--chhhcCChHHHHHHHHHhcc
Q psy2647           3 SNIWHGEKPHKCQV--CGKAFSQSSNLITHS-RKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus         3 ~~~~~~~~~~~c~~--c~~~~~~~~~l~~~~-~~~~~~~~~~c~~--c~~~~~~~~~l~~H~~~~~~   64 (72)
                      .++|.++++|.|..  |++.|.....|..|+ ..|.++++|.|..  |++.|.....|..|++++|+
T Consensus        89 ~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             HHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            45688899999998  999999999999998 7899999999988  99999999999999998653

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.61  E-value=1.1e-15  Score=58.25  Aligned_cols=43  Identities=49%  Similarity=0.746  Sum_probs=24.8

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3455555556666666666666666666655555555555543

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=1.1e-15  Score=58.31  Aligned_cols=44  Identities=41%  Similarity=0.688  Sum_probs=29.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            34566666677777777777777777777766766667766654

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=9.4e-16  Score=58.47  Aligned_cols=44  Identities=43%  Similarity=0.660  Sum_probs=30.3

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            34566677777777777777777777777777777777776654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.61  E-value=7.3e-16  Score=60.71  Aligned_cols=48  Identities=31%  Similarity=0.498  Sum_probs=43.9

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHH-HhcCCCCccCCcchhhcCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSR-KHTGFKPFACDLCGRAFQR   51 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~-~~~~~~~~~c~~c~~~~~~   51 (72)
                      ..+.++++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.+
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            45678899999999999999999999997 8999999999999999975

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=9.9e-16  Score=58.41  Aligned_cols=43  Identities=42%  Similarity=0.686  Sum_probs=27.7

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            4 GSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            4456666666666666666666666666666666666666554

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=9.4e-16  Score=58.44  Aligned_cols=43  Identities=37%  Similarity=0.593  Sum_probs=24.6

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            3455555555565566555555555555555555555555544

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=9.2e-16  Score=58.52  Aligned_cols=43  Identities=33%  Similarity=0.517  Sum_probs=28.0

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            4556666666666666666666666666666666666666554

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.60  E-value=1e-15  Score=58.38  Aligned_cols=44  Identities=36%  Similarity=0.469  Sum_probs=30.2

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            34566667777777777777777777777777777777776654

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.4e-15  Score=57.91  Aligned_cols=43  Identities=37%  Similarity=0.525  Sum_probs=27.9

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|.++++|.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4456666666666666666666666666666666666666554

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1e-15  Score=58.35  Aligned_cols=43  Identities=44%  Similarity=0.551  Sum_probs=28.0

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4556666666666666666666666666666666666666554

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.2e-15  Score=58.14  Aligned_cols=44  Identities=41%  Similarity=0.580  Sum_probs=27.3

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|+..|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556666666666666666666666666666666666666554

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=8.2e-16  Score=58.66  Aligned_cols=44  Identities=36%  Similarity=0.530  Sum_probs=29.6

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566666777777777777777777777776766667766654

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=9.9e-16  Score=58.41  Aligned_cols=44  Identities=45%  Similarity=0.653  Sum_probs=32.9

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45667777777777777777777777777777777777777665

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1e-15  Score=58.34  Aligned_cols=43  Identities=47%  Similarity=0.672  Sum_probs=26.7

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            4456666666666666666666666666666666666666554

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.1e-15  Score=58.29  Aligned_cols=43  Identities=44%  Similarity=0.606  Sum_probs=28.5

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4556666666666666666666666666666666666666654

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.60  E-value=1.1e-15  Score=58.29  Aligned_cols=44  Identities=41%  Similarity=0.569  Sum_probs=29.2

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34556666667777777777766777777666666666666654

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.1e-15  Score=58.32  Aligned_cols=43  Identities=47%  Similarity=0.722  Sum_probs=27.2

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4456666666666666666666666666666666666666554

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=8.6e-16  Score=58.59  Aligned_cols=44  Identities=43%  Similarity=0.611  Sum_probs=30.0

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            34566667777777777777777777777777776677776654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.3e-15  Score=58.08  Aligned_cols=44  Identities=32%  Similarity=0.413  Sum_probs=29.9

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566666777777777777777777777777776677766654

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.60  E-value=8.8e-16  Score=58.53  Aligned_cols=44  Identities=41%  Similarity=0.593  Sum_probs=30.5

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566677777777777777777777777777777777776654

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=58.18  Aligned_cols=44  Identities=41%  Similarity=0.563  Sum_probs=31.0

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566677777777777777777777777777777777777655

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1e-15  Score=58.33  Aligned_cols=44  Identities=45%  Similarity=0.698  Sum_probs=30.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44566677777777777777777777777777777777777655

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.60  E-value=9.9e-16  Score=63.34  Aligned_cols=56  Identities=45%  Similarity=0.853  Sum_probs=51.1

Q ss_pred             ccCCCcccCcc--cchhccCcHHHHHhHHHhcCCCCccCCc--chhhcCChHHHHHHHHH
Q psy2647           6 WHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKET   61 (72)
Q Consensus         6 ~~~~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~H~~~   61 (72)
                      ....++|.|..  |++.|.....|..|++.|.++++|.|..  |++.|.....|..|+++
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            44567899988  9999999999999999999999999965  99999999999999876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.2e-15  Score=58.19  Aligned_cols=43  Identities=47%  Similarity=0.659  Sum_probs=27.7

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4556666666666666666666666666666666666666554

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.3e-15  Score=58.08  Aligned_cols=43  Identities=42%  Similarity=0.638  Sum_probs=27.9

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4556666666666666666666666666666666666666654

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.4e-15  Score=57.96  Aligned_cols=44  Identities=41%  Similarity=0.532  Sum_probs=28.9

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34556666666666666666666666666666666666666654

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.4e-15  Score=57.99  Aligned_cols=44  Identities=43%  Similarity=0.639  Sum_probs=29.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44566666677777777777777777777766766666766654

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.1e-15  Score=58.20  Aligned_cols=43  Identities=47%  Similarity=0.734  Sum_probs=27.3

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            4 GSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             ccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4556666666666666666666666666666666666666554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.60  E-value=1.2e-15  Score=58.12  Aligned_cols=44  Identities=39%  Similarity=0.608  Sum_probs=31.2

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34566777777777777777777777777777777777777655

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.60  E-value=1.3e-15  Score=58.07  Aligned_cols=43  Identities=35%  Similarity=0.483  Sum_probs=30.3

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4566677777777777777777777777777777777777655

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.3e-15  Score=58.09  Aligned_cols=44  Identities=39%  Similarity=0.637  Sum_probs=27.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      ++++|+++++|.|..|++.|.....|..|+..|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34556666666666666666666666666666666666666554

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.1e-15  Score=58.23  Aligned_cols=43  Identities=51%  Similarity=0.716  Sum_probs=28.4

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4556666666666666666666666666666666666666654

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.5e-15  Score=57.90  Aligned_cols=41  Identities=46%  Similarity=0.655  Sum_probs=21.2

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      ++|+++++|.|..|++.|.....|..|+..|+++++|.|..
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             CTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             cCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            34455555555555555555555555555555555555543

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.2e-15  Score=58.21  Aligned_cols=44  Identities=41%  Similarity=0.592  Sum_probs=29.3

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34566666667777777777766777777666666666666654

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.2e-15  Score=58.15  Aligned_cols=43  Identities=47%  Similarity=0.647  Sum_probs=28.6

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            4556666666676676666666666666666666666666654

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.1e-15  Score=58.23  Aligned_cols=44  Identities=41%  Similarity=0.628  Sum_probs=34.3

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35667777888888888888888888888888888888887765

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.5e-15  Score=57.90  Aligned_cols=43  Identities=40%  Similarity=0.649  Sum_probs=26.9

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4456666666666666666666666666666666666666554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=58.10  Aligned_cols=44  Identities=36%  Similarity=0.454  Sum_probs=30.1

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566667777777777777777777777777777777776654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.7e-15  Score=57.77  Aligned_cols=43  Identities=37%  Similarity=0.498  Sum_probs=30.7

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            4566677777777777777777777777777777777777655

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.59  E-value=1.9e-15  Score=64.00  Aligned_cols=54  Identities=31%  Similarity=0.640  Sum_probs=39.7

Q ss_pred             cccC--cccchhccCcHHHHHhHHHhcCCCCccCCc--chhhcCChHHHHHHHHHhcc
Q psy2647          11 PHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus        11 ~~~c--~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~H~~~~~~   64 (72)
                      ||.|  ..|++.|.....|..|++.|.++++|.|..  |++.|.....|..|+++|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            4667  677777777777777777777777777766  77777777777777777443

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=58.18  Aligned_cols=43  Identities=35%  Similarity=0.560  Sum_probs=27.4

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             cCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4456666666666666666666666666666666666666554

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.58  E-value=1.5e-15  Score=57.90  Aligned_cols=44  Identities=45%  Similarity=0.683  Sum_probs=30.4

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44566677777777777777777777777777777777776654

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.58  E-value=1.1e-15  Score=58.27  Aligned_cols=43  Identities=37%  Similarity=0.598  Sum_probs=29.7

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            4566667777777777777777777777777777777776654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.58  E-value=3.1e-15  Score=71.51  Aligned_cols=54  Identities=41%  Similarity=0.773  Sum_probs=27.5

Q ss_pred             ccCCCcccC--cccchhccCcHHHHHhHHHhcCCCCccCC--cchhhcCChHHHHHHH
Q psy2647           6 WHGEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHK   59 (72)
Q Consensus         6 ~~~~~~~~c--~~c~~~~~~~~~l~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~H~   59 (72)
                      |.++++|.|  ..|++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+
T Consensus        37 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~   94 (190)
T 1tf6_A           37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF   94 (190)
T ss_dssp             HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHH
T ss_pred             cCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHH
Confidence            444445555  44555555555555555555554555555  4555555555555554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=8.3e-16  Score=58.13  Aligned_cols=42  Identities=26%  Similarity=0.504  Sum_probs=30.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|++++||.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERT-HARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHH-CCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHh-cCCCCCCCCC
Confidence            45566677777777777777777777777776 6677777775

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=2.7e-15  Score=57.35  Aligned_cols=43  Identities=44%  Similarity=0.632  Sum_probs=27.8

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHH-HhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSR-KHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~-~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|..|++.|.....|..|++ .|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            455666666666666666666666666666 6666666666554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=3.5e-16  Score=69.72  Aligned_cols=61  Identities=20%  Similarity=0.295  Sum_probs=52.8

Q ss_pred             ccCCCccc-Ccccchhc--cCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCC
Q psy2647           6 WHGEKPHK-CQVCGKAF--SQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus         6 ~~~~~~~~-c~~c~~~~--~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      +.+.+++. |..|++.|  .....|..|++.|.++++|.|..|++.|.....|..|++.++..+
T Consensus        44 h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           44 HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             ccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            44455544 99999988  889999999999999999999999999999999999999866544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=4.4e-15  Score=56.58  Aligned_cols=42  Identities=48%  Similarity=0.716  Sum_probs=24.9

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +++|+++++|.|..|++.|.....|..|++.|+++++|.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            345555666666666666666666666666666666665553

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.57  E-value=1.2e-15  Score=57.13  Aligned_cols=38  Identities=34%  Similarity=0.648  Sum_probs=21.8

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      .|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRT-HAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGG-GCCCCSCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHh-cCCCCCCCC
Confidence            44555556666666666666666666555 555555555

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=2.8e-15  Score=57.12  Aligned_cols=42  Identities=48%  Similarity=0.748  Sum_probs=22.7

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      .++|+++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            4 GSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            344555555555555555555555555555555555555543

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.56  E-value=3.9e-15  Score=56.48  Aligned_cols=43  Identities=33%  Similarity=0.516  Sum_probs=36.0

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcch
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCG   46 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~   46 (72)
                      ..|+++++|.|..|++.|.....|..|++.|+++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4577888888888888888888888888888888888888875

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.56  E-value=1.1e-15  Score=60.21  Aligned_cols=50  Identities=20%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             hhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCC
Q psy2647          19 KAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPV   69 (72)
Q Consensus        19 ~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~   69 (72)
                      +.|.....|..|++.|+++++|.|..|++.|...+.|..|+++ |.+++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLEL-RHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHH-HTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHH-hccCCCC
Confidence            4566677788899999999999999999999999999999998 7788886

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.55  E-value=2.3e-15  Score=63.72  Aligned_cols=58  Identities=26%  Similarity=0.441  Sum_probs=53.0

Q ss_pred             cccccCCCcccCcc--cchhccCcHHHHHhHHHhcCCCCccCCc---chhhcCChHHHHHHHHHhc
Q psy2647           3 SNIWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL---CGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus         3 ~~~~~~~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~~---c~~~~~~~~~l~~H~~~~~   63 (72)
                      .++|.++++|.|..  |++.|.....|..|++.|.+   +.|..   |++.|.....|..|+++||
T Consensus        23 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           23 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             HHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             HHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            45678899999988  99999999999999999987   99999   9999999999999999854

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.9e-15  Score=57.62  Aligned_cols=40  Identities=35%  Similarity=0.679  Sum_probs=20.9

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2em4_A            4 GSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSSSEECSSSCCEESSHHHHHHHHHH-HSSSSCCCC
T ss_pred             ccccCCCcCcCCCCCCCccCCHHHHHHHHHh-cCCCCCCCC
Confidence            3344455555555555555555555555554 444555554

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=2.8e-15  Score=57.14  Aligned_cols=40  Identities=30%  Similarity=0.551  Sum_probs=23.2

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERSSGP   43 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSHHHHHHHHHH-CSSCCSCST
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHH-hCCCCCCCC
Confidence            3445555566666666666666666666655 555556555

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.55  E-value=2.1e-15  Score=57.48  Aligned_cols=43  Identities=33%  Similarity=0.675  Sum_probs=38.9

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHH-HSSCCCSSCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHH-cCCCCCCCCC
Confidence            356778899999999999999999999999998 7888999985

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=2.6e-15  Score=57.23  Aligned_cols=43  Identities=33%  Similarity=0.691  Sum_probs=39.1

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HTKQKPSGPS   44 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHH-TSCCCCSSCS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHH-cCCCCCCCCC
Confidence            466788999999999999999999999999998 8889999885

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=3.5e-15  Score=56.86  Aligned_cols=43  Identities=40%  Similarity=0.515  Sum_probs=30.6

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3556677777777777777777777777777777777777655

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=1.9e-15  Score=57.62  Aligned_cols=40  Identities=38%  Similarity=0.756  Sum_probs=20.9

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C   43 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHHH-HCCCCCCCS
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHH-hCCCCCCCC
Confidence            3344455555555555555555555555555 444555554

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.54  E-value=3e-15  Score=57.06  Aligned_cols=39  Identities=36%  Similarity=0.673  Sum_probs=19.4

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2emj_A            5 SSGTGEKPFECAECGKSFSISSQLATHQRI-HTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCSEECSSSSCEESSHHHHHHHHHH-HTTSCSSSS
T ss_pred             CCCCCCCCEECCCCCcccCCHHHHHHHHHH-hCCCCCCCC
Confidence            344444555555555555555555555554 444455544

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=3.2e-15  Score=56.92  Aligned_cols=43  Identities=28%  Similarity=0.556  Sum_probs=39.0

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHH-CCSSSCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHh-cCCCCCCCCC
Confidence            366778899999999999999999999999998 8889999885

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=1.8e-15  Score=57.66  Aligned_cols=40  Identities=33%  Similarity=0.626  Sum_probs=21.6

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   43 (46)
T 2eoz_A            4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HTQETLSGP   43 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESSHHHHHHHHHH-HSSCCSSSC
T ss_pred             cccCCCCCCeECcccChhhCCHHHHHHHHHH-hCCCCCCCC
Confidence            3444555555555555555555555555555 445555554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=4.2e-15  Score=55.55  Aligned_cols=38  Identities=26%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      .|+++++|.|..|++.|...+.|..|+++ |.+++||.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   41 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKM-HTVKSGPSS   41 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHH-TSCCSSCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHH-hCCCCCCCC
Confidence            34455555555555555555555555555 455555554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3.4e-15  Score=56.38  Aligned_cols=42  Identities=38%  Similarity=0.648  Sum_probs=37.8

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   42 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGPS   42 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHH-HTSSCSCSCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            35568889999999999999999999999998 8889999885

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=3.2e-15  Score=56.99  Aligned_cols=39  Identities=28%  Similarity=0.542  Sum_probs=20.5

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HTGEKPSGP   43 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHH-HTSSCCCSC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHH-cCCCCCCCC
Confidence            344455555555555555555555555554 444555554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=3.3e-15  Score=56.88  Aligned_cols=39  Identities=46%  Similarity=0.720  Sum_probs=19.0

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      ++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            5 SSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             CCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            344444445555555555444445555444444444444

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=1.7e-15  Score=57.75  Aligned_cols=43  Identities=33%  Similarity=0.657  Sum_probs=38.9

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTT-TTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHH-cCCCCCCCCC
Confidence            366778899999999999999999999999998 8889999985

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.7e-15  Score=57.75  Aligned_cols=39  Identities=46%  Similarity=0.720  Sum_probs=18.5

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      ++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytp_A            5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP   43 (46)
T ss_dssp             CSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSS
T ss_pred             cCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            344444444444444444444444444444444444444

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.9e-15  Score=57.60  Aligned_cols=39  Identities=51%  Similarity=0.768  Sum_probs=18.9

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      ++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            5 SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             CSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            344444444454455444444444444444444444444

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=2.7e-15  Score=57.15  Aligned_cols=39  Identities=44%  Similarity=0.688  Sum_probs=18.6

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      ++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep1_A            5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSS
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            344444444444444444444444444444444444444

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=3e-15  Score=57.05  Aligned_cols=39  Identities=49%  Similarity=0.771  Sum_probs=19.0

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      ++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enf_A            5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCC
T ss_pred             cCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCC
Confidence            344444445555555545444444444444444444444

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=4.8e-15  Score=55.92  Aligned_cols=42  Identities=33%  Similarity=0.551  Sum_probs=27.6

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHH-TTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHH-hCCCCCCCCC
Confidence            44456666667777777777777777777666 5666666663

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.53  E-value=1.1e-14  Score=54.44  Aligned_cols=42  Identities=38%  Similarity=0.621  Sum_probs=38.9

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|+++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            457899999999999999999999999999999999999884

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.3e-14  Score=54.21  Aligned_cols=42  Identities=31%  Similarity=0.444  Sum_probs=38.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|+++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            457899999999999999999999999999999999999874

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=2.1e-15  Score=57.48  Aligned_cols=39  Identities=41%  Similarity=0.703  Sum_probs=18.7

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2yto_A            5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGERHSGP   43 (46)
T ss_dssp             CCCCSCCCEECSSSCCEESSHHHHHHHHHH-HTCCCBTTT
T ss_pred             cccCCCCCEECcccCCccCCHhHHHHHHHH-cCCCCCCCC
Confidence            334444445555555555555555555444 444444444

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=7.2e-15  Score=55.95  Aligned_cols=42  Identities=45%  Similarity=0.642  Sum_probs=27.2

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .+|+++++|.|..|++.|.....|..|++.|+++++|.|..|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            456666666666666666666666666666666666666554

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=2.4e-15  Score=57.35  Aligned_cols=40  Identities=48%  Similarity=0.786  Sum_probs=20.1

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      ++|+++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3444455555555555555555555555555555555443

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.53  E-value=1.3e-14  Score=55.27  Aligned_cols=43  Identities=49%  Similarity=0.692  Sum_probs=39.9

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999864

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.53  E-value=5.1e-15  Score=56.40  Aligned_cols=42  Identities=36%  Similarity=0.664  Sum_probs=38.5

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHH-HSCCSSCSCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            56778899999999999999999999999998 8889999885

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=2.8e-15  Score=57.11  Aligned_cols=43  Identities=35%  Similarity=0.691  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHH-HTTSCCSCSS
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHH-cCCCCCCCCC
Confidence            356778899999999999999999999999998 8889999885

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=3.4e-15  Score=56.88  Aligned_cols=39  Identities=49%  Similarity=0.738  Sum_probs=18.6

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      ++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A            5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             cCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            344444444444444444444444444444444444444

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=3.6e-15  Score=56.83  Aligned_cols=39  Identities=31%  Similarity=0.598  Sum_probs=18.7

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2emi_A            5 SSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEKPSGP   43 (46)
T ss_dssp             CSCSSCCCEECSSSCCEESSHHHHHHHHGG-GCSCCCCSC
T ss_pred             cccCCCCCCCCCCCCcccCCHHHHHHHHhH-hCCCCCCCC
Confidence            334444445555555555555555555444 444444444

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=3.9e-15  Score=56.69  Aligned_cols=39  Identities=36%  Similarity=0.725  Sum_probs=19.3

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~~C   43 (46)
T 2eor_A            5 SSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HTGEKPSGP   43 (46)
T ss_dssp             SSSSCCCSEECTTTCCEESSHHHHHHHHHH-HHSCCCSSS
T ss_pred             cCcCCCcCccCCCCCCCcCCHHHHHHHHHh-cCCCCCCCC
Confidence            344444555555555555555555555554 444445544

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=4.5e-15  Score=56.52  Aligned_cols=40  Identities=40%  Similarity=0.669  Sum_probs=21.1

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKPSGP   43 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHHHT-SCSSSSSCC
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHHHH-hCCCCCCCC
Confidence            3344455555555555555555555555554 445555554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=3.3e-15  Score=56.88  Aligned_cols=43  Identities=28%  Similarity=0.611  Sum_probs=38.9

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHH-HSCCCTTSSS
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            356778899999999999999999999999998 8889999884

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=6.3e-15  Score=56.12  Aligned_cols=42  Identities=38%  Similarity=0.748  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HTAEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHH-TTCCCSSSCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHH-cCCCCCCCCC
Confidence            56678899999999999999999999999998 8889999885

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=3.4e-15  Score=56.89  Aligned_cols=43  Identities=28%  Similarity=0.620  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHH-HSSSSCSSCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHH-HCCCCCCCCC
Confidence            356778899999999999999999999999998 7888999985

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.2e-14  Score=55.31  Aligned_cols=43  Identities=42%  Similarity=0.665  Sum_probs=39.9

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=2.5e-15  Score=57.26  Aligned_cols=43  Identities=30%  Similarity=0.718  Sum_probs=38.7

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHH-HHCSSCSSSC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHh-cCCCCCCCCC
Confidence            356778899999999999999999999999998 7888999885

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=2.7e-15  Score=57.17  Aligned_cols=40  Identities=35%  Similarity=0.697  Sum_probs=21.1

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2eq1_A            4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSCCCCCTTTTCCCSSHHHHHHHHTT-TCCSCCSSC
T ss_pred             ccccCCCCCeECCcCChhhCCHHHHHHHHHH-hCCCCCCCC
Confidence            3344455555555555555555555555554 445555554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=4.1e-15  Score=56.69  Aligned_cols=39  Identities=59%  Similarity=0.770  Sum_probs=18.9

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      ++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em6_A            5 SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP   43 (46)
T ss_dssp             SCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCT
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            344444444454454444444444444444444444444

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=4.6e-15  Score=56.47  Aligned_cols=43  Identities=35%  Similarity=0.613  Sum_probs=38.6

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHH-HSCCSSCCSC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHh-cCCCCCCCCC
Confidence            366778899999999999999999999999998 7888999884

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=3.2e-15  Score=56.96  Aligned_cols=43  Identities=33%  Similarity=0.644  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHH-HHCCSCCSCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHH-cCCCCCCCCC
Confidence            366778899999999999999999999999998 7888999885

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=4e-15  Score=56.69  Aligned_cols=40  Identities=40%  Similarity=0.736  Sum_probs=19.3

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      .+|+++++|.|..|++.|.....|..|++.|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3444444455555555554444455554444444444443

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=3.8e-15  Score=56.19  Aligned_cols=42  Identities=36%  Similarity=0.602  Sum_probs=26.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTT-TCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhh-cCCCCCCCCC
Confidence            34455666666666666666666666666665 5566666653

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=3.1e-15  Score=57.03  Aligned_cols=43  Identities=23%  Similarity=0.556  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGPS   44 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHH-HHSTTSSCCS
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHH-HcCCCCCCCC
Confidence            366778899999999999999999999999998 7888999884

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=3.7e-15  Score=56.79  Aligned_cols=42  Identities=33%  Similarity=0.706  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGG-TSCCCCCSCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhh-cCCCCCCCCC
Confidence            56678899999999999999999999999998 8889999985

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.52  E-value=2.7e-15  Score=57.18  Aligned_cols=43  Identities=30%  Similarity=0.646  Sum_probs=38.7

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HTGEKPSGPS   44 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTG-GGCCCCCSSS
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHh-cCCCCCCCCC
Confidence            356778899999999999999999999999998 8888999885

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=3.1e-15  Score=57.00  Aligned_cols=43  Identities=30%  Similarity=0.695  Sum_probs=38.9

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGKKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGG-GSSCCCSCSS
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHH-hcCCCCCCCC
Confidence            356778899999999999999999999999998 8889999884

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.52  E-value=2.9e-15  Score=57.06  Aligned_cols=43  Identities=23%  Similarity=0.473  Sum_probs=38.9

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGG-GSSSSCSCSS
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHH-cCCCCCcCCC
Confidence            356778899999999999999999999999998 8899999884

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=6.1e-15  Score=56.16  Aligned_cols=43  Identities=33%  Similarity=0.737  Sum_probs=38.9

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGEKPSGPS   44 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHT-TSSCCSCCSC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            356778899999999999999999999999998 8889999885

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=3.5e-15  Score=56.81  Aligned_cols=43  Identities=30%  Similarity=0.533  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGENPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTT-TTTSCCSCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHH-cCCCCCCCCC
Confidence            356778899999999999999999999999998 8889999885

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=2.6e-15  Score=57.16  Aligned_cols=39  Identities=38%  Similarity=0.761  Sum_probs=19.6

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2yrj_A            5 SSGTGEKPYRCGECGKAFAQKANLTQHQRI-HTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCEECSSSCCEESSHHHHHHHHTT-TSSCCSSCS
T ss_pred             cCCCCCCCeECCCCCCccCCHHHHHHHHHH-cCCCCCCCC
Confidence            344444555555555555555555555554 444455544

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=4.4e-15  Score=56.56  Aligned_cols=43  Identities=35%  Similarity=0.746  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYRPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHH-HTCCCSSCSS
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHH-cCCCCCCCCC
Confidence            356778899999999999999999999999998 8889999884

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=5e-15  Score=56.40  Aligned_cols=42  Identities=36%  Similarity=0.686  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTT-TTTCCCCSSC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHH-hCCCCCCCCC
Confidence            56778899999999999999999999999998 8889999985

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.52  E-value=5.6e-15  Score=55.22  Aligned_cols=39  Identities=23%  Similarity=0.568  Sum_probs=23.6

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|...+.|..|+++ |.+++||.|
T Consensus         4 ~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~-H~~~k~~~C   42 (42)
T 2epc_A            4 GSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSGPSSG   42 (42)
T ss_dssp             SCCCSSCCEECSSSCCEESSHHHHHHHHHH-TTCCCCCCC
T ss_pred             ccCCCCCCeECCCCCcccCCHHHHHHHhhh-cCCCCCCCC
Confidence            345555666666666666666666666665 555566654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=6.1e-15  Score=56.17  Aligned_cols=42  Identities=33%  Similarity=0.691  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHH-HCCCCSSCSS
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            56678899999999999999999999999998 7889999985

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=2e-14  Score=54.71  Aligned_cols=43  Identities=30%  Similarity=0.680  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGG-GTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHh-cCCCCCCCCC
Confidence            356678899999999999999999999999998 8888999985

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=2e-14  Score=54.68  Aligned_cols=43  Identities=42%  Similarity=0.683  Sum_probs=39.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4578999999999999999999999999999999999999864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.9e-14  Score=54.71  Aligned_cols=43  Identities=33%  Similarity=0.684  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHH-HCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHH-cCCCCCCCCC
Confidence            356678899999999999999999999999998 8888999985

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=7.1e-15  Score=55.95  Aligned_cols=43  Identities=33%  Similarity=0.526  Sum_probs=38.9

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHH-CCSCCCSCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            356678899999999999999999999999998 8899999885

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=3.2e-15  Score=56.91  Aligned_cols=42  Identities=31%  Similarity=0.695  Sum_probs=38.5

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGVKPSGPS   44 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGG-GSCCCSCSSC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHH-cCCCCCCCCC
Confidence            56778899999999999999999999999998 8889999885

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=2.2e-14  Score=54.62  Aligned_cols=43  Identities=42%  Similarity=0.566  Sum_probs=39.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999864

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=3.7e-15  Score=56.81  Aligned_cols=42  Identities=38%  Similarity=0.642  Sum_probs=38.5

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGG-TSCSSCSCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            56778899999999999999999999999998 8889999885

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.52  E-value=2.8e-15  Score=57.07  Aligned_cols=43  Identities=30%  Similarity=0.662  Sum_probs=39.0

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGG-SSSCCCSCCT
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            366778899999999999999999999999998 8899999985

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.4e-14  Score=55.15  Aligned_cols=42  Identities=33%  Similarity=0.612  Sum_probs=38.6

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTT-TSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            56778899999999999999999999999998 8889999985

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=4e-15  Score=56.64  Aligned_cols=41  Identities=46%  Similarity=0.671  Sum_probs=21.9

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      .++|+++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            34455555555555555555555555555555555555543

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=54.80  Aligned_cols=43  Identities=44%  Similarity=0.648  Sum_probs=39.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=3.6e-15  Score=56.28  Aligned_cols=42  Identities=31%  Similarity=0.559  Sum_probs=28.0

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTT-SSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            44556666677777777777777777777666 6666676663

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=3.2e-15  Score=56.97  Aligned_cols=39  Identities=28%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|.++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2emz_A            5 SSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREKSSGP   43 (46)
T ss_dssp             SCSSCCCSCCCSSSCCCCSSHHHHHHHHHH-HHHTTCCCS
T ss_pred             cCCCCCCCeECCCCCcccCCHHHHHHHHHH-hCCCCCCCC
Confidence            344445555555555555555555555554 444455544

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.7e-14  Score=54.86  Aligned_cols=42  Identities=36%  Similarity=0.667  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTT-TSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            56678889999999999999999999999998 8889999985

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.51  E-value=9.8e-15  Score=56.11  Aligned_cols=43  Identities=28%  Similarity=0.521  Sum_probs=37.7

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      .+.++++|.|..|++.|.....|..|++.|+++++|.|..|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4667888999999999999999999999999999999998874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=3.9e-15  Score=56.75  Aligned_cols=40  Identities=50%  Similarity=0.796  Sum_probs=20.0

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      ++|+++++|.|..|++.|.....|..|++.|+++++|.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            5 SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            3444455555555555555555555555555544455443

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.7e-14  Score=54.89  Aligned_cols=42  Identities=33%  Similarity=0.691  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTT-TTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHh-hCCCCCCCCC
Confidence            56678899999999999999999999999998 8889999985

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=5.4e-15  Score=56.27  Aligned_cols=43  Identities=35%  Similarity=0.726  Sum_probs=39.0

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGG-GCCCSCCSSC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHh-cCCCCCCCCC
Confidence            366788999999999999999999999999998 8889999885

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=4.7e-15  Score=56.47  Aligned_cols=42  Identities=36%  Similarity=0.699  Sum_probs=38.3

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTT-TCCCCCSCCS
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHH-cCCCCCCCCC
Confidence            56678899999999999999999999999998 8888999985

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.1e-14  Score=54.67  Aligned_cols=43  Identities=33%  Similarity=0.480  Sum_probs=39.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999863

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2e-14  Score=54.68  Aligned_cols=43  Identities=40%  Similarity=0.552  Sum_probs=39.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999863

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=9.4e-15  Score=55.16  Aligned_cols=41  Identities=17%  Similarity=0.283  Sum_probs=26.9

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ++.|.++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQAL-HAGESGPSSG   44 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHH-HTTSCCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHH-HCCCCCCCCC
Confidence            3445566667777777777777777777766 5666666663

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.8e-15  Score=57.13  Aligned_cols=39  Identities=33%  Similarity=0.605  Sum_probs=18.9

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C   43 (46)
T 2en3_A            5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDPSGP   43 (46)
T ss_dssp             CCSCCCCSEECSSSCCEESSSHHHHHHHHH-HHHSCCSSC
T ss_pred             cccCCCCCeeCcccChhhCCHHHHHHHHHH-hCCCCCCCC
Confidence            344444455555555555555555555544 344444444

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=7.5e-15  Score=55.96  Aligned_cols=42  Identities=33%  Similarity=0.610  Sum_probs=38.0

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQRPSGPS   44 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHH-HHSCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHH-cCCCCCCCCC
Confidence            55678889999999999999999999999998 7888999884

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.1e-14  Score=54.65  Aligned_cols=43  Identities=35%  Similarity=0.708  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGG-GCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            356678899999999999999999999999998 8889999985

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.3e-14  Score=54.47  Aligned_cols=43  Identities=33%  Similarity=0.641  Sum_probs=38.9

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGG-GSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            356778899999999999999999999999998 8889999985

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.3e-15  Score=56.43  Aligned_cols=41  Identities=20%  Similarity=0.360  Sum_probs=23.6

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKT-HAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGG-GCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHH-cCCCCCcCC
Confidence            34445555566666666666666666666655 555556555

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=3.4e-15  Score=55.86  Aligned_cols=39  Identities=33%  Similarity=0.595  Sum_probs=22.8

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   42 (42)
T 2en2_A            4 GSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSGPSSG   42 (42)
T ss_dssp             CCCCSSCSEECTTTCCEESSHHHHHHHTHH-HHSCCSSCC
T ss_pred             cccCCCCCEeCCCcChhhCCHHHHHHHHHH-cCCCCCCCC
Confidence            345555566666666666666666666655 455555554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=7.6e-15  Score=55.89  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=38.3

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVL-HMGQKNSGPS   44 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHH-HSCCSCCCTT
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            56678899999999999999999999999998 8889999885

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=7.8e-15  Score=55.89  Aligned_cols=42  Identities=33%  Similarity=0.604  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPSGPS   44 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTT-TCCSCSSCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHH-hCCCCCCCCC
Confidence            56678899999999999999999999999998 8889999884

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=54.79  Aligned_cols=42  Identities=33%  Similarity=0.702  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTT-TSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHh-cCCCCCCCCC
Confidence            56678899999999999999999999999998 8889999985

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=4.2e-15  Score=56.59  Aligned_cols=43  Identities=35%  Similarity=0.712  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTT-TTTCSCCCSC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHh-cCCCCCCCCC
Confidence            356778899999999999999999999999998 8888999884

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=9.3e-15  Score=55.63  Aligned_cols=42  Identities=26%  Similarity=0.610  Sum_probs=38.3

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HSGEKPSGPS   44 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHH-SCCSSCCSSC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHH-hCCCCCCCCC
Confidence            56678899999999999999999999999998 8889999884

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=6e-15  Score=56.20  Aligned_cols=42  Identities=21%  Similarity=0.553  Sum_probs=38.2

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HMGEKTSGPS   44 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGG-GGSCCCCCSC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHh-cCCCCCCCCC
Confidence            56678899999999999999999999999998 7889999884

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2e-15  Score=56.44  Aligned_cols=39  Identities=38%  Similarity=0.647  Sum_probs=20.6

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   42 (42)
T 2ytb_A            4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSGPSSG   42 (42)
T ss_dssp             CCCCSCCSBCCTTTTCCBSSHHHHHTTGGG-TSCCSCCCC
T ss_pred             cccCCCCCeeCCCccchhCCHHHHHHHHHH-hCCCCCCCC
Confidence            344455555555555555555555555554 445555544

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.6e-14  Score=55.00  Aligned_cols=42  Identities=33%  Similarity=0.692  Sum_probs=38.2

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTT-TTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHh-cCCCCCCCCC
Confidence            45678899999999999999999999999998 8889999985

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.1e-15  Score=56.67  Aligned_cols=43  Identities=28%  Similarity=0.537  Sum_probs=38.9

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTT-TSCSCCSSCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            366778899999999999999999999999998 8899999884

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=5.3e-15  Score=56.34  Aligned_cols=40  Identities=45%  Similarity=0.730  Sum_probs=21.1

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      ++|+++++|.|..|++.|.....|..|++.|.++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3445555555555555555555555555555555555543

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.8e-15  Score=56.71  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=38.8

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEKCSGPS   44 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTT-TCCSCSSCCS
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            356778899999999999999999999999998 8889999884

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=5.3e-15  Score=56.32  Aligned_cols=42  Identities=33%  Similarity=0.684  Sum_probs=38.5

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTT-TCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhh-cCCCCCCCCC
Confidence            56778899999999999999999999999998 8889999885

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.9e-14  Score=54.69  Aligned_cols=42  Identities=36%  Similarity=0.727  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGG-TSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHh-cCCCCCcCCC
Confidence            56678899999999999999999999999998 8889999985

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=4.5e-15  Score=56.54  Aligned_cols=42  Identities=33%  Similarity=0.704  Sum_probs=38.3

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHH-HHSCCCSCSC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHh-cCCCCCCCCC
Confidence            56678899999999999999999999999998 7888999885

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.4e-14  Score=53.92  Aligned_cols=42  Identities=40%  Similarity=0.623  Sum_probs=39.1

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            567899999999999999999999999999999999999884

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.4e-14  Score=54.51  Aligned_cols=42  Identities=29%  Similarity=0.627  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|.++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTT-TSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            56678899999999999999999999999998 8889999985

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=2.9e-14  Score=53.75  Aligned_cols=42  Identities=29%  Similarity=0.524  Sum_probs=38.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            467899999999999999999999999999999999999874

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=6.6e-15  Score=56.06  Aligned_cols=42  Identities=33%  Similarity=0.636  Sum_probs=38.3

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGG-GTTCCCSSTT
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            56678899999999999999999999999998 8889999884

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=8.6e-15  Score=55.31  Aligned_cols=41  Identities=32%  Similarity=0.549  Sum_probs=28.3

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGG-GSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhH-hcCCCCCCC
Confidence            44556666777777777777777777777776 666677665

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.1e-14  Score=54.60  Aligned_cols=43  Identities=47%  Similarity=0.693  Sum_probs=40.0

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999864

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1e-14  Score=55.71  Aligned_cols=42  Identities=36%  Similarity=0.610  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHH-HhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKE-TQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~-~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|++ + |.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~-H~~~k~~~C~   45 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYY-HTGEKPSGPS   45 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTT-TTTSCSSSCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhh-cCCCCCCCCC
Confidence            5667889999999999999999999999999 7 8889999885

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=5.9e-15  Score=56.20  Aligned_cols=42  Identities=33%  Similarity=0.678  Sum_probs=38.3

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHH-HSSCCCSSSC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHH-cCCCCCCCCC
Confidence            56678899999999999999999999999998 8888999884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.5e-14  Score=54.43  Aligned_cols=43  Identities=40%  Similarity=0.489  Sum_probs=39.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999863

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=5.4e-15  Score=56.28  Aligned_cols=39  Identities=36%  Similarity=0.727  Sum_probs=19.3

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2eq3_A            5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGKKPSGP   43 (46)
T ss_dssp             CSSCCCCSSEETTTTEECSSHHHHHHHHTT-SCCCCCCCS
T ss_pred             cCCCCCCCeECCCCChhhCCHHHHHHHHHH-hCCCCCCCC
Confidence            344444455555555555555555555544 444445544

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=5.3e-15  Score=55.35  Aligned_cols=39  Identities=31%  Similarity=0.647  Sum_probs=22.0

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|...+.|..|+++ |.+++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   42 (42)
T 2eos_A            4 GSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSGPSSG   42 (42)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHTTT-TSCCSSTTC
T ss_pred             cccCCCCCEECCCCCCccCCHHHHHHHHHh-cCCCCCCCC
Confidence            344555556666666666666666666555 555555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.8e-14  Score=54.28  Aligned_cols=42  Identities=40%  Similarity=0.615  Sum_probs=39.4

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            567899999999999999999999999999999999999986

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.50  E-value=2.8e-14  Score=53.27  Aligned_cols=41  Identities=34%  Similarity=0.529  Sum_probs=38.3

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            46789999999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.50  E-value=7.2e-15  Score=55.93  Aligned_cols=42  Identities=29%  Similarity=0.615  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKPSGPS   44 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGG-GTSCCCCSTT
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHH-hCCCCCCCCC
Confidence            56778899999999999999999999999998 8889999885

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.3e-14  Score=54.01  Aligned_cols=42  Identities=40%  Similarity=0.585  Sum_probs=39.1

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            567899999999999999999999999999999999999884

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.9e-14  Score=53.74  Aligned_cols=41  Identities=41%  Similarity=0.607  Sum_probs=38.2

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            46789999999999999999999999999999999999986

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.6e-14  Score=54.37  Aligned_cols=43  Identities=49%  Similarity=0.658  Sum_probs=39.6

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999863

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=3.5e-14  Score=54.04  Aligned_cols=42  Identities=31%  Similarity=0.696  Sum_probs=38.0

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGG-SCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            45678889999999999999999999999998 8889999985

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=7.5e-15  Score=55.90  Aligned_cols=43  Identities=30%  Similarity=0.682  Sum_probs=39.0

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HTGEKPSGPS   44 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGG-GSCCCCSCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            366788999999999999999999999999998 8888999985

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=6.9e-15  Score=56.03  Aligned_cols=40  Identities=25%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccC-CCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE-MRPVPV   71 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~-~~p~~~   71 (72)
                      ++.|.++++|.|..|++.|.....|..|+++ |.+ ++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~~C   44 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERI-HTRGVKSGPS   44 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSSHHHHHHHTT-CCSCCTTSSS
T ss_pred             ccccCCCCCEECcCCCCcCCCHHHHHHHHHH-cCCCCCCCCC
Confidence            3344455555555555555555555555555 444 555555

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2.1e-14  Score=53.62  Aligned_cols=41  Identities=51%  Similarity=0.764  Sum_probs=38.2

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            46789999999999999999999999999999999999886

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=3.2e-14  Score=53.65  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=39.0

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            567899999999999999999999999999999999999884

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.49  E-value=8.9e-15  Score=55.72  Aligned_cols=42  Identities=26%  Similarity=0.606  Sum_probs=38.2

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTREKPSGPS   44 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGG-GCCSSCCSCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            55678899999999999999999999999998 8889999884

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=1.5e-14  Score=60.57  Aligned_cols=46  Identities=24%  Similarity=0.548  Sum_probs=43.2

Q ss_pred             cccCCCcccCcc--cchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647           5 IWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus         5 ~~~~~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      .|.++++|.|..  |++.|.....|..|++.|.++++|.|..|++.|.
T Consensus        32 ~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           32 QHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             GGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             HhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            688899999999  9999999999999999999999999999999873

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=3e-14  Score=54.17  Aligned_cols=43  Identities=47%  Similarity=0.699  Sum_probs=39.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=5.4e-14  Score=52.82  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=18.0

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      +|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            34444444444444444444444444444444444444

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.4e-14  Score=53.48  Aligned_cols=41  Identities=39%  Similarity=0.634  Sum_probs=38.1

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            46789999999999999999999999999999999999886

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2.8e-14  Score=53.81  Aligned_cols=39  Identities=33%  Similarity=0.606  Sum_probs=19.8

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C   43 (44)
T 2eox_A            5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCEEETTTTEEESSSHHHHTTHHH-HCCCCCCSC
T ss_pred             cCCCCCCCeECcccCcccCCHHHHHHHHHH-hCCCCCCCC
Confidence            344445555555555555555555555554 444455544

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2.8e-14  Score=54.31  Aligned_cols=43  Identities=35%  Similarity=0.536  Sum_probs=39.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|+++++|.|..
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999863

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7.6e-15  Score=55.88  Aligned_cols=42  Identities=33%  Similarity=0.712  Sum_probs=38.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HTGERPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTT-SCSCCSSCCS
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHh-hCCCCCCCCC
Confidence            56678899999999999999999999999998 8899999884

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2.1e-14  Score=54.14  Aligned_cols=42  Identities=31%  Similarity=0.609  Sum_probs=38.9

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            467899999999999999999999999999999999999884

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.8e-14  Score=54.33  Aligned_cols=37  Identities=24%  Similarity=0.512  Sum_probs=19.3

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      |+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C   43 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHH-HSSCCCSSC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHH-hCCCCCCCC
Confidence            4444555555555555555555555554 444555554

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.3e-14  Score=55.24  Aligned_cols=42  Identities=29%  Similarity=0.616  Sum_probs=38.0

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HTGEKLSGPS   44 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHH-HHCCCCCCSC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHH-HcCCCCCCCC
Confidence            45678889999999999999999999999998 8889999884

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=5.2e-14  Score=53.07  Aligned_cols=42  Identities=31%  Similarity=0.435  Sum_probs=38.7

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +..+|+++++|.|..|++.|.....|..|++.|+++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            456789999999999999999999999999999999999884

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=4.8e-15  Score=55.97  Aligned_cols=42  Identities=26%  Similarity=0.372  Sum_probs=38.9

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +..+|+++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            467899999999999999999999999999999999999874

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=4.1e-14  Score=53.83  Aligned_cols=42  Identities=36%  Similarity=0.417  Sum_probs=39.2

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcC-CCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTG-FKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~-~~~~~c~   43 (72)
                      ++++|+++++|.|..|++.|.....|..|++.|++ +++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            56789999999999999999999999999999999 9999986

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=4.3e-15  Score=56.58  Aligned_cols=43  Identities=33%  Similarity=0.726  Sum_probs=38.7

Q ss_pred             HhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        29 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGG-GSSCCSSCSC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            356778899999999999999999999999998 8889999884

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=4.6e-14  Score=54.04  Aligned_cols=43  Identities=40%  Similarity=0.627  Sum_probs=30.3

Q ss_pred             cccccCCCcccCc--ccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           3 SNIWHGEKPHKCQ--VCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         3 ~~~~~~~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      .++|+++++|.|.  .|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4566677777776  677777777777777777777777777655

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=4.1e-14  Score=53.81  Aligned_cols=42  Identities=36%  Similarity=0.577  Sum_probs=39.3

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            567899999999999999999999999999999999999986

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=8.6e-14  Score=52.94  Aligned_cols=42  Identities=48%  Similarity=0.741  Sum_probs=38.8

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      ...|+++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999999999999999999999999999999863

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.46  E-value=1e-15  Score=65.49  Aligned_cols=61  Identities=21%  Similarity=0.396  Sum_probs=54.6

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      ..+|.++++|.|..|++.|.....|..|+..+.+ .++.|..|++.|.....|..|++..|.
T Consensus        23 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           23 IRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4568899999999999999999999999998874 689999999999999999999986553

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.46  E-value=4.4e-15  Score=59.95  Aligned_cols=51  Identities=16%  Similarity=0.270  Sum_probs=43.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHH
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDL   55 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l   55 (72)
                      +.++|+++++|.|..|++.|.....|.   ..|.++++|.|..|++.|....++
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            567899999999999999999877775   678999999999999999766543

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=4.7e-14  Score=52.41  Aligned_cols=37  Identities=30%  Similarity=0.638  Sum_probs=17.9

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      |+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERI-HTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGG-CCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHH-hCCCCCcCC
Confidence            3344445555555555555555555444 444444443

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=5.1e-14  Score=53.51  Aligned_cols=43  Identities=47%  Similarity=0.647  Sum_probs=39.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|.++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999863

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=5.4e-14  Score=53.25  Aligned_cols=37  Identities=41%  Similarity=0.771  Sum_probs=19.7

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      |+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C   43 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEKSGPS   43 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTT-TSSCCCCCS
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHH-hCCCCCCCC
Confidence            4445555555555555555555555554 445555554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=8.3e-14  Score=52.30  Aligned_cols=39  Identities=23%  Similarity=0.479  Sum_probs=35.8

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQ-THSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHH-HTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHh-hCCCCCccCC
Confidence            46788999999999999999999999998 8889999985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.8e-14  Score=54.60  Aligned_cols=42  Identities=40%  Similarity=0.657  Sum_probs=38.8

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCc
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL   44 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~   44 (72)
                      +.+|+++++|.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            567899999999999999999999999999999999999863

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.2e-13  Score=52.05  Aligned_cols=41  Identities=41%  Similarity=0.630  Sum_probs=38.1

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            46789999999999999999999999999999999999876

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.44  E-value=6.4e-14  Score=56.26  Aligned_cols=35  Identities=31%  Similarity=0.818  Sum_probs=33.0

Q ss_pred             CCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          37 FKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ++||.|..|++.|...+.|..|+++ |++++||.|.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~-Ht~ekp~~C~   36 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCP   36 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH-HHTCCCEECT
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHH-hCCCcCeECC
Confidence            6899999999999999999999999 8999999884

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=5.7e-14  Score=52.19  Aligned_cols=40  Identities=40%  Similarity=0.625  Sum_probs=37.4

Q ss_pred             cccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         3 ~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      +.+|+++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CSSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4678999999999999999999999999999999999986

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=6.7e-14  Score=53.20  Aligned_cols=41  Identities=32%  Similarity=0.641  Sum_probs=37.0

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HTGEKPSGPS   44 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTT-TSSSCCCSCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHH-hCCCCCCCCC
Confidence            3467889999999999999999999999998 8889999884

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=7e-14  Score=53.17  Aligned_cols=41  Identities=32%  Similarity=0.611  Sum_probs=36.7

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ++.|.++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREKPSGPS   44 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTH-HHHCCCCSCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            3467889999999999999999999999998 7788999884

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.36  E-value=1.2e-12  Score=53.64  Aligned_cols=38  Identities=24%  Similarity=0.414  Sum_probs=26.6

Q ss_pred             hcCCCCccCCc--chhhcCChHHHHHHH-HHhccCCCCCCCC
Q psy2647          34 HTGFKPFACDL--CGRAFQRKVDLRRHK-ETQHTEMRPVPVT   72 (72)
Q Consensus        34 ~~~~~~~~c~~--c~~~~~~~~~l~~H~-~~~~~~~~p~~~~   72 (72)
                      .++++||.|..  |++.|...+.|..|+ ++ |++++|+.|.
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rri-HTgEKP~~~~   62 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAV-HKSDLPAFSA   62 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHH-SSSCCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhh-CCCCCCcccc
Confidence            35677777754  777777777777776 44 7777777663

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.35  E-value=9.4e-13  Score=49.74  Aligned_cols=39  Identities=28%  Similarity=0.545  Sum_probs=35.5

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~~~C~   42 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKSGP   42 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHH-HSCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHH-ccCCCCCCCc
Confidence            46788999999999999999999999998 7889999874

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.33  E-value=1.8e-12  Score=47.57  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             cCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCC
Q psy2647          35 TGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP   70 (72)
Q Consensus        35 ~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~   70 (72)
                      +++++|.|..|++.|...+.|..|+++ |.+++||.
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~   36 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNV-HRRDRARL   36 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHT-TCCSCTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHH-cCCCccce
Confidence            345556666666666666666666665 55555553

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.32  E-value=8.8e-14  Score=59.70  Aligned_cols=56  Identities=13%  Similarity=0.150  Sum_probs=45.5

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ...+|+++++|.|..|++.|.....|..|++.|++++||.|..|..    ...+..|+++
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~   71 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKY   71 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhcc
Confidence            3456889999999999999999999999999999999999976543    3344456665

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.7e-13  Score=50.70  Aligned_cols=41  Identities=39%  Similarity=0.763  Sum_probs=36.7

Q ss_pred             HHHhcCCCCccCC--cchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          31 SRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        31 ~~~~~~~~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .+.|+++++|.|.  .|++.|.....|..|+++ |.+++||.|.
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   46 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPSGPS   46 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTT-SCCCCSCSSC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            3467889999998  899999999999999998 8889999884

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=8.9e-13  Score=47.77  Aligned_cols=34  Identities=15%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHHHhccCCC
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      .|+++++|.|..|++.|.....|..|+++ |.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKT-NHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHH-HCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHH-HcCCC
Confidence            35556666666666666666666666666 44444

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=3.9e-12  Score=55.29  Aligned_cols=51  Identities=12%  Similarity=0.121  Sum_probs=44.7

Q ss_pred             hccCcHHHHHhHHHhcCCCCccCCcchhhc-CChHHHHHHHHHhccCCCCCCCC
Q psy2647          20 AFSQSSNLITHSRKHTGFKPFACDLCGRAF-QRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~-~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .+.....+..|+..+.++++|.|..|++.| .....|..|+++ | +++||.|.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~-h-~~k~~~C~   66 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMEN-C-KQEMFTCH   66 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHH-H-CCCCCCCS
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHH-H-CCCCeECC
Confidence            445667788888888889999999999999 999999999999 5 88999884

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.29  E-value=2.8e-12  Score=47.01  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=34.0

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      |+++++|.|..|++.|.....|..|++.|+++++|.+.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            56789999999999999999999999999999988753

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=3.3e-13  Score=58.77  Aligned_cols=52  Identities=13%  Similarity=0.125  Sum_probs=43.0

Q ss_pred             ccCcHHHHHhHHHhcCCCCccCCcchhhcC-ChHHHHHHHHHhccCCCCCCCC
Q psy2647          21 FSQSSNLITHSRKHTGFKPFACDLCGRAFQ-RKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        21 ~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~-~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +.....+..|++.|.++++|.|..|++.|. ....|..|+++|+..++||.|.
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~   58 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQ   58 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECC
Confidence            334445678889999999999999999999 9999999999955547888774

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.27  E-value=4e-12  Score=45.40  Aligned_cols=34  Identities=24%  Similarity=0.488  Sum_probs=22.9

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhccCCCC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP   68 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p   68 (72)
                      |+++++|.|..|++.|...+.|..|+++ |.+++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIRE-VHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHH-TSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHH-HcCCCC
Confidence            4556677777777777777777777776 444443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=4.6e-13  Score=55.87  Aligned_cols=46  Identities=26%  Similarity=0.478  Sum_probs=39.0

Q ss_pred             HHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCC-CCCCCC
Q psy2647          27 LITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM-RPVPVT   72 (72)
Q Consensus        27 l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~-~p~~~~   72 (72)
                      +.+|++.|+++++|.|..|++.|.....|..|++..|.++ +||.|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~   49 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCP   49 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECS
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCC
Confidence            3467888999999999999999999999999998546664 888874

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.2e-12  Score=53.79  Aligned_cols=61  Identities=25%  Similarity=0.325  Sum_probs=52.2

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      |...+.+.+++.|..|+..|. ...|..|+ .+.+++++.|..|++.|. ...|..|+++ +.+.
T Consensus         8 H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~-c~~~   68 (75)
T 2d9k_A            8 HEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEV-CGRE   68 (75)
T ss_dssp             CCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHH-BTTB
T ss_pred             hCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHH-ccCC
Confidence            455678899999999999994 88899999 888999999999999877 5889999998 5444

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=2.8e-12  Score=49.05  Aligned_cols=38  Identities=32%  Similarity=0.628  Sum_probs=34.6

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +.++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSG   44 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGG-SCSCCCCCSC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHh-cCCCCCccCC
Confidence            5667899999999999999999999998 8889999884

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.26  E-value=2.4e-12  Score=46.62  Aligned_cols=32  Identities=41%  Similarity=0.802  Sum_probs=22.6

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |++.|++++||.|..|++.|.....|..|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            34556667777777777777777777777776

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.26  E-value=4.5e-13  Score=60.66  Aligned_cols=59  Identities=20%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             CcccCcccchhcc------CcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          10 KPHKCQVCGKAFS------QSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        10 ~~~~c~~c~~~~~------~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +.+.|..|...|.      ....|..|+ .|++++||.|..|++.|.....|..|+++ |  ++||.|.
T Consensus        40 ~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~-H--~~~~~C~  104 (129)
T 2wbt_A           40 KRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRY-T--EHTKVCP  104 (129)
T ss_dssp             HHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHH-T--CCCCBCT
T ss_pred             CcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHH-C--CCCCCCC
Confidence            4456776666555      445566665 57788999999999999999999999999 4  7888874

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.26  E-value=2.9e-12  Score=50.17  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=36.1

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCcc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA   41 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~   41 (72)
                      +..+|+++++|.|..|++.|.....|..|++.|++++||.
T Consensus        15 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A           15 PRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             HHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4567889999999999999999999999999999988763

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=5.3e-12  Score=45.66  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=33.0

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCCCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP   39 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~   39 (72)
                      .+|+++++|.|..|++.|.....|..|++.|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            578999999999999999999999999999988764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.24  E-value=4.8e-12  Score=45.22  Aligned_cols=33  Identities=36%  Similarity=0.744  Sum_probs=20.6

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhccCCC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      |+++++|.|..|++.|.....|..|+++ |.+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKV-HTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG-GTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHH-cCCCC
Confidence            3455666666666666666666666666 44444

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.23  E-value=1.1e-11  Score=50.80  Aligned_cols=40  Identities=28%  Similarity=0.364  Sum_probs=35.5

Q ss_pred             cccCCCcccCcc--cchhccCcHHHHHhH-HHhcCCCCccCCc
Q psy2647           5 IWHGEKPHKCQV--CGKAFSQSSNLITHS-RKHTGFKPFACDL   44 (72)
Q Consensus         5 ~~~~~~~~~c~~--c~~~~~~~~~l~~~~-~~~~~~~~~~c~~   44 (72)
                      .+++++||.|..  |++.|....+|..|+ ++|++++|+.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            467899999975  999999999999998 6899999998864

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=5e-12  Score=52.68  Aligned_cols=41  Identities=51%  Similarity=0.767  Sum_probs=37.6

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC   42 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c   42 (72)
                      +.++|.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus        37 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           37 HRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             HHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             HHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34678889999999999999999999999999999999987

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.21  E-value=1.8e-11  Score=43.30  Aligned_cols=32  Identities=28%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHhccCCCCCC
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP   70 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~   70 (72)
                      +||.|..|++.|...+.|..|+++ |.+++|+.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL-HELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH-HTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH-hCCCCCCC
Confidence            367777788888887888888777 66777664

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.20  E-value=1.6e-11  Score=48.06  Aligned_cols=39  Identities=33%  Similarity=0.616  Sum_probs=34.7

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHH-HhccCCCCCCCC
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKE-TQHTEMRPVPVT   72 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~-~~~~~~~p~~~~   72 (72)
                      .+.++++|.|..|++.|.....|..|++ + |.+++||.|.
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~-H~~~k~~~C~   45 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQV-HTSERPHKCQ   45 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHT-SCCCCCCCSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHh-cCCCCCccCC
Confidence            3567889999999999999999999997 6 8899999884

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.20  E-value=1.6e-11  Score=43.76  Aligned_cols=35  Identities=29%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCCCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP   39 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~   39 (72)
                      +|+++++|.|..|++.|.....|..|++.|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            47789999999999999999999999999987754

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.20  E-value=3.5e-12  Score=53.96  Aligned_cols=46  Identities=30%  Similarity=0.500  Sum_probs=39.7

Q ss_pred             HHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCC---CCCCCC
Q psy2647          27 LITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM---RPVPVT   72 (72)
Q Consensus        27 l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~---~p~~~~   72 (72)
                      +..|++.|.++++|.|..|++.|.....|..|++.++.+.   +||.|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~   51 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS   51 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECS
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECC
Confidence            4568888999999999999999999999999998867664   788773

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.20  E-value=4.1e-12  Score=51.46  Aligned_cols=41  Identities=22%  Similarity=0.534  Sum_probs=36.1

Q ss_pred             HHhcCCCCccCCcchhhcCChHHHHHHHHHhc-cCCCCCCCC
Q psy2647          32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQH-TEMRPVPVT   72 (72)
Q Consensus        32 ~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~-~~~~p~~~~   72 (72)
                      ..|+++++|.|..|++.|.....|..|++.+| .+++||.|.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~   44 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCP   44 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECT
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECC
Confidence            35778899999999999999999999999856 688999874

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.19  E-value=1.9e-11  Score=43.61  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=31.6

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCCCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP   39 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~   39 (72)
                      +|+++++|.|..|++.|.....|..|++.|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            47889999999999999999999999999987654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=1e-11  Score=51.12  Aligned_cols=41  Identities=39%  Similarity=0.702  Sum_probs=36.4

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .+.|.++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~C~   46 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HTGEKPYKCL   46 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHG-GGCSCCEECS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHh-cCCCCCeECC
Confidence            3467889999999999999999999999998 7888998874

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.17  E-value=3.2e-11  Score=43.51  Aligned_cols=35  Identities=31%  Similarity=0.577  Sum_probs=31.9

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~   36 (72)
                      +.++|+++++|.|..|++.|.....|..|++.|.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            46789999999999999999999999999998875

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.17  E-value=2.2e-11  Score=44.21  Aligned_cols=34  Identities=32%  Similarity=0.564  Sum_probs=23.1

Q ss_pred             cCCCCccCC--cchhhcCChHHHHHHHHHhccCCCCC
Q psy2647          35 TGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMRPV   69 (72)
Q Consensus        35 ~~~~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~~p~   69 (72)
                      +++++|.|.  .|++.|...+.|..|+++ |.+++||
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHK-HEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHH-HHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            456677777  477777777777777776 5566665

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=3.4e-11  Score=44.11  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=21.3

Q ss_pred             hcCCCCccCCc--chhhcCChHHHHHHHHHh
Q psy2647          34 HTGFKPFACDL--CGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        34 ~~~~~~~~c~~--c~~~~~~~~~l~~H~~~~   62 (72)
                      +.+++||.|..  |++.|...+.|..|+++|
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~H   34 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVH   34 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            45667777765  788888888888887773

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.9e-11  Score=50.40  Aligned_cols=39  Identities=21%  Similarity=0.503  Sum_probs=34.2

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhcc--CCCCCCCC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHT--EMRPVPVT   72 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~--~~~p~~~~   72 (72)
                      |+++++|.|..|++.|.....|..|+++|++  .++||.|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~   42 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCE   42 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECT
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCC
Confidence            6788999999999999999999999999655  47888874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.12  E-value=3.8e-11  Score=51.16  Aligned_cols=39  Identities=21%  Similarity=0.366  Sum_probs=34.4

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .+...+++.|+.|++.|.....|..|+++ |.+++||.|.
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~-H~~~k~~~C~   60 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRL-LHAAQVFPCK   60 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHT-TSCSSSEECT
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhh-ccCCCccCCC
Confidence            44567789999999999999999999998 7888999884

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.12  E-value=3.5e-11  Score=47.30  Aligned_cols=36  Identities=31%  Similarity=0.553  Sum_probs=29.5

Q ss_pred             CCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          36 GFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        36 ~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~   36 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRT-HTGEKPYKCE   36 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHH-HHCCCCEECS
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHH-cCCCCCcCCC
Confidence            35789999999999999999999998 7888888874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=6.1e-11  Score=42.51  Aligned_cols=28  Identities=36%  Similarity=0.654  Sum_probs=20.5

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |+++++|+|..|++.|.....|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            4566777777777777777777777776

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=5.5e-11  Score=42.57  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=19.1

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |.++++|.|..|++.|.....|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            4556667777777777777777777766

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.10  E-value=4.7e-11  Score=48.82  Aligned_cols=38  Identities=26%  Similarity=0.438  Sum_probs=34.5

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +.++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   41 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRPFKCN   41 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGG-GCCSCSEECS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCEeCC
Confidence            5678999999999999999999999998 8888998874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=99.10  E-value=2.6e-11  Score=43.92  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=14.6

Q ss_pred             cCCCCccCCcchhhcCChHHHHHHH
Q psy2647          35 TGFKPFACDLCGRAFQRKVDLRRHK   59 (72)
Q Consensus        35 ~~~~~~~c~~c~~~~~~~~~l~~H~   59 (72)
                      .+++||.|..|++.|.+.++|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            3455566666666666666665555

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.5e-11  Score=43.16  Aligned_cols=28  Identities=25%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |.++++|.|..|++.|...+.|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            4456666777777777777777777666

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=4.3e-11  Score=43.19  Aligned_cols=28  Identities=25%  Similarity=0.478  Sum_probs=17.2

Q ss_pred             hcCCCCccCCcchhhcCCh-HHHHHHHHH
Q psy2647          34 HTGFKPFACDLCGRAFQRK-VDLRRHKET   61 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~-~~l~~H~~~   61 (72)
                      |+++++|.|..|++.|... +.|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHh
Confidence            4455566666666666666 666666665

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=9.5e-11  Score=41.93  Aligned_cols=28  Identities=36%  Similarity=0.673  Sum_probs=19.7

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |.++++|.|..|++.|.....|..|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHH
Confidence            4556677777777777777777777776

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.1e-10  Score=42.09  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=31.0

Q ss_pred             ccccCCCcccCcccchhccCc-HHHHHhHHHhcCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQS-SNLITHSRKHTGF   37 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~-~~l~~~~~~~~~~   37 (72)
                      .+|+++++|.|..|++.|... ..|..|++.|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            468899999999999999999 9999999998865

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.09  E-value=4.1e-11  Score=45.83  Aligned_cols=31  Identities=29%  Similarity=0.622  Sum_probs=15.4

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHH-HhcC
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSR-KHTG   36 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~-~~~~   36 (72)
                      |+++++|.|..|++.|.....|..|++ .|++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence            444455555555555555555555554 4443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=2.4e-11  Score=43.99  Aligned_cols=28  Identities=21%  Similarity=0.314  Sum_probs=16.4

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHH-HHH
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRH-KET   61 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H-~~~   61 (72)
                      |++++||.|..|++.|...+.|..| ++.
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~   32 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQK   32 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHH
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            4455566666666666666666666 554

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.09  E-value=9.2e-11  Score=42.52  Aligned_cols=35  Identities=31%  Similarity=0.630  Sum_probs=31.9

Q ss_pred             ccCCCcccCc--ccchhccCcHHHHHhHHHhcCCCCc
Q psy2647           6 WHGEKPHKCQ--VCGKAFSQSSNLITHSRKHTGFKPF   40 (72)
Q Consensus         6 ~~~~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~~~~   40 (72)
                      |+++++|.|.  .|++.|.....|..|++.|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5688999999  5999999999999999999998876

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.09  E-value=1.2e-10  Score=41.06  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCcc
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA   41 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~   41 (72)
                      +||.|..|++.|.....|..|+..|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47899999999999999999999999998874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.4e-10  Score=41.51  Aligned_cols=34  Identities=41%  Similarity=0.529  Sum_probs=31.1

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ..|+++++|.|..|++.|.....|..|++.|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            4688999999999999999999999999998875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.07  E-value=5.8e-11  Score=49.04  Aligned_cols=39  Identities=44%  Similarity=0.939  Sum_probs=35.1

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCCCCc
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF   40 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~   40 (72)
                      +.++|.++++|.|..|++.|.....|..|++.|++++||
T Consensus        36 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           36 HKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             HHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             HHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            345688899999999999999999999999999998875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.4e-10  Score=41.55  Aligned_cols=29  Identities=28%  Similarity=0.566  Sum_probs=21.3

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHh
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      +.++++|.|..|++.|.....|..|+++|
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            45567777777777777777777777773

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=9.6e-11  Score=42.33  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=30.6

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHh-HHHhcCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITH-SRKHTGF   37 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~-~~~~~~~   37 (72)
                      ++|++++||.|..|++.|.....|..| +..|++.
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            578999999999999999999999999 8888753

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.2e-10  Score=41.72  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=30.7

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +.|+++++|.|..|++.|.....|..|++.|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            4578899999999999999999999999988765

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.8e-10  Score=41.26  Aligned_cols=34  Identities=32%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ..|+++++|.|..|++.|.....|..|++.|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            4678899999999999999999999999998765

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.05  E-value=3.4e-10  Score=46.12  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=21.9

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +.+++||.|..|++.|.....|..|++.|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            44566777777777777777777777776654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=2.5e-10  Score=41.74  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             cccCCCcccCcc--cchhccCcHHHHHhHHHhcCC
Q psy2647           5 IWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         5 ~~~~~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      .+++++||.|..  |++.|.....|..|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            357899999986  999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=3.4e-10  Score=40.43  Aligned_cols=33  Identities=33%  Similarity=0.543  Sum_probs=30.3

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      .|+++++|.|..|++.|.....|..|++.|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            577899999999999999999999999999875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=8.1e-12  Score=53.55  Aligned_cols=40  Identities=18%  Similarity=0.319  Sum_probs=35.3

Q ss_pred             HHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        31 ~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      ...|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~-Ht~ekp~~C   56 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNI-HNEEFQKRA   56 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHH-HHHHHHHHC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHH-hCCCCCccc
Confidence            4467889999999999999999999999998 777778776

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.02  E-value=5.6e-11  Score=52.18  Aligned_cols=40  Identities=18%  Similarity=0.225  Sum_probs=36.3

Q ss_pred             cCCCcccCcccchhccCcHHHHHh-HHHhcCCCCccCCcch
Q psy2647           7 HGEKPHKCQVCGKAFSQSSNLITH-SRKHTGFKPFACDLCG   46 (72)
Q Consensus         7 ~~~~~~~c~~c~~~~~~~~~l~~~-~~~~~~~~~~~c~~c~   46 (72)
                      .++++|.|..|++.|.....|..| ++.|++++||.|..+.
T Consensus        46 ~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           46 VLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            568899999999999999999999 8899999999998643

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.8e-10  Score=49.48  Aligned_cols=38  Identities=32%  Similarity=0.456  Sum_probs=34.9

Q ss_pred             ccCCCc--------ccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           6 WHGEKP--------HKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         6 ~~~~~~--------~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      |.++++        |.|..|++.|.....|..|++.|++++||.|.
T Consensus        49 H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             TTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             ccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            677766        89999999999999999999999999999985

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.01  E-value=1.5e-10  Score=44.24  Aligned_cols=33  Identities=30%  Similarity=0.708  Sum_probs=27.8

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHH-HhccC
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKE-TQHTE   65 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~-~~~~~   65 (72)
                      +|+++++|.|..|++.|.....|..|++ +|.++
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            3678899999999999999999999999 74433

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.00  E-value=6.8e-12  Score=50.46  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=34.3

Q ss_pred             HHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          28 ITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        28 ~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ..|++.|++++||.|..|++.|.....|.   ++ |.+++||.|.
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~-H~~~k~~~C~   43 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LF-DPMTGTFRCT   43 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HE-ETTTTEEBCS
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hh-cCCCCCEECC
Confidence            35677889999999999999999887775   56 8889999884

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.99  E-value=4.4e-10  Score=44.53  Aligned_cols=34  Identities=41%  Similarity=0.936  Sum_probs=30.8

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      +||.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~   34 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCG   34 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSCSEECT
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH-hCCCCCccCC
Confidence            479999999999999999999998 7888898874

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.97  E-value=4.5e-10  Score=40.51  Aligned_cols=28  Identities=25%  Similarity=0.552  Sum_probs=19.2

Q ss_pred             hcCCCCccCCc--chhhcCChHHHHHHHHH
Q psy2647          34 HTGFKPFACDL--CGRAFQRKVDLRRHKET   61 (72)
Q Consensus        34 ~~~~~~~~c~~--c~~~~~~~~~l~~H~~~   61 (72)
                      ++++++|.|..  |++.|...+.|..|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            34566777763  77777777777777776

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=6.5e-10  Score=39.71  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      .+.++++|.|..|++.|.....|..|++.|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            467889999999999999999999999998865

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.96  E-value=1e-11  Score=43.67  Aligned_cols=30  Identities=30%  Similarity=0.545  Sum_probs=19.4

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhccCCCCC
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQHTEMRPV   69 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~   69 (72)
                      ||.|..|++.|...+.|..|+++ |.+++|+
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKT-AFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTS-SSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHH-HccCCCC
Confidence            56666666666666666666666 5555554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.96  E-value=1.1e-09  Score=37.32  Aligned_cols=27  Identities=26%  Similarity=0.600  Sum_probs=20.4

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      ++|.|..|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHcc
Confidence            367788888888888888888887443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.93  E-value=8.8e-10  Score=43.17  Aligned_cols=33  Identities=33%  Similarity=0.724  Sum_probs=30.0

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ||.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~   33 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCT   33 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-TSSCCCEECS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh-cCCCCCccCC
Confidence            68999999999999999999998 8888998874

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.93  E-value=9.8e-10  Score=37.42  Aligned_cols=24  Identities=50%  Similarity=1.020  Sum_probs=18.7

Q ss_pred             CCccCCcchhhcCChHHHHHHHHH
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ++|.|..|++.|.....|..|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            567788888888888888888777

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.93  E-value=3.7e-10  Score=40.84  Aligned_cols=31  Identities=32%  Similarity=0.595  Sum_probs=27.3

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      +.+++||.|..|++.|.+..+|..|+       ||.|.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~   33 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCS   33 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTST
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECc
Confidence            46789999999999999999999998       56664

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.91  E-value=1.1e-10  Score=44.42  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=27.7

Q ss_pred             hHHHhcCCCCccCC--cchhhcCChHHHHHHHHHhccCC
Q psy2647          30 HSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus        30 ~~~~~~~~~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      +...|+++++|.|.  .|++.|...+.|..|+++ |.++
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~-H~~e   46 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT-HLED   46 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHHHH-HTTT
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHHHH-ccCC
Confidence            33457788889995  699999998999999888 4443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.90  E-value=1.9e-09  Score=36.44  Aligned_cols=24  Identities=42%  Similarity=0.984  Sum_probs=18.4

Q ss_pred             CccCCcchhhcCChHHHHHHHHHh
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      ||.|..|++.|.....|..|+++|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHHh
Confidence            677777888888888888887773

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.88  E-value=1.3e-09  Score=36.91  Aligned_cols=23  Identities=35%  Similarity=0.558  Sum_probs=16.7

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ||.|..|++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            56777777777777777777776

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.88  E-value=1.8e-09  Score=38.88  Aligned_cols=33  Identities=39%  Similarity=0.586  Sum_probs=29.6

Q ss_pred             cccCCCcccCc--ccchhccCcHHHHHhHHHhcCC
Q psy2647           5 IWHGEKPHKCQ--VCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         5 ~~~~~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      .++++++|.|.  .|++.|.....|..|++.|+++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            36789999998  4999999999999999999875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.86  E-value=1.9e-09  Score=36.36  Aligned_cols=26  Identities=23%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHhc
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      +||.|..|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            36777788888887778888877733

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.86  E-value=2.7e-09  Score=36.99  Aligned_cols=24  Identities=50%  Similarity=1.067  Sum_probs=17.3

Q ss_pred             CCccCC--cchhhcCChHHHHHHHHH
Q psy2647          38 KPFACD--LCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        38 ~~~~c~--~c~~~~~~~~~l~~H~~~   61 (72)
                      +||.|.  .|++.|...+.|..|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence            467776  677777777777777776

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.85  E-value=2e-09  Score=36.32  Aligned_cols=24  Identities=33%  Similarity=0.837  Sum_probs=17.9

Q ss_pred             CccCCcchhhcCChHHHHHHHHHh
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      +|.|..|++.|.....|..|+++|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHHh
Confidence            577777777777777777777773

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.84  E-value=2.8e-09  Score=35.59  Aligned_cols=24  Identities=33%  Similarity=0.717  Sum_probs=19.2

Q ss_pred             CCccCCcchhhcCChHHHHHHHHH
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      +||.|..|++.|...+.|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            577888888888888888888776

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.1e-10  Score=47.81  Aligned_cols=37  Identities=22%  Similarity=0.257  Sum_probs=34.7

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcc
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC   45 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c   45 (72)
                      +++|.|..|++.|.....|..|++.|.++++|.|..|
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            6789999999999999999999999999999999876

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.82  E-value=1e-10  Score=40.98  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=28.3

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCc
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPF   40 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~   40 (72)
                      +||.|..|++.|.....|..|++.|++++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4789999999999999999999999988876

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.82  E-value=1.7e-09  Score=36.38  Aligned_cols=24  Identities=29%  Similarity=0.901  Sum_probs=18.0

Q ss_pred             CCccCCcchhhcCChHHHHHHHHH
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ++|.|..|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHh
Confidence            467777777777777777777776

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.82  E-value=3e-09  Score=36.63  Aligned_cols=27  Identities=52%  Similarity=1.109  Sum_probs=19.1

Q ss_pred             CCccCC--cchhhcCChHHHHHHHHHhccC
Q psy2647          38 KPFACD--LCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        38 ~~~~c~--~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      +||.|.  .|++.|...+.|..|+++ |.+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~-H~~   29 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHH-hcC
Confidence            367776  777777777777777777 443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=4.4e-09  Score=42.79  Aligned_cols=34  Identities=24%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhccCCC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      +.+++||.|..|++.|.....|..|+++|.++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            4568999999999999999999999999655443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.81  E-value=1.2e-09  Score=36.59  Aligned_cols=24  Identities=21%  Similarity=0.581  Sum_probs=18.3

Q ss_pred             CCccCCcchhhcCChHHHHHHHHH
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      +||.|..|++.|...+.|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            567777788888777777777765

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.81  E-value=3.1e-09  Score=43.56  Aligned_cols=39  Identities=33%  Similarity=0.682  Sum_probs=34.0

Q ss_pred             HhcCCCCccCC--cchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          33 KHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        33 ~~~~~~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .+.++++|.|.  .|++.|.....|..|+++ |.+++||.|.
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~-h~~~~~~~C~   53 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCR   53 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHH-HHCCCCEECT
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHh-hCCCCCeECC
Confidence            46778999997  599999999999999998 7788888874

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.28  E-value=6.1e-10  Score=37.85  Aligned_cols=23  Identities=35%  Similarity=0.790  Sum_probs=17.5

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ||.|..|++.|...+.|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            57777777777777777777776

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.78  E-value=5.6e-09  Score=35.25  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=25.5

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++|.|..|++.|.....|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4789999999999999999999998765

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.77  E-value=3.4e-09  Score=40.13  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=30.4

Q ss_pred             ccccCCCcccCc--ccchhccCcHHHHHhHHHhcCC
Q psy2647           4 NIWHGEKPHKCQ--VCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         4 ~~~~~~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ..|+++++|.|.  .|++.|.....|..|++.|+++
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            358899999996  7999999999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.77  E-value=5.2e-09  Score=35.49  Aligned_cols=29  Identities=31%  Similarity=0.681  Sum_probs=26.1

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +++|.|..|++.|.....|..|++.|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            46899999999999999999999988765

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.77  E-value=2.9e-09  Score=35.45  Aligned_cols=23  Identities=39%  Similarity=0.899  Sum_probs=16.1

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ||.|..|++.|.....|..|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CccCCCCCCcCCCHHHHHHHHHH
Confidence            46677777777777777777766

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.77  E-value=3.3e-09  Score=36.14  Aligned_cols=26  Identities=46%  Similarity=0.910  Sum_probs=17.5

Q ss_pred             CccCCcchhhcCChHHHHHH-HHHhccC
Q psy2647          39 PFACDLCGRAFQRKVDLRRH-KETQHTE   65 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H-~~~~~~~   65 (72)
                      ||.|..|++.|...+.|..| +++ |.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~-H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKI-HSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTT-SCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHH-ccC
Confidence            56777777777777777777 455 443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.76  E-value=9.3e-09  Score=34.63  Aligned_cols=28  Identities=36%  Similarity=0.717  Sum_probs=25.5

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++|.|..|++.|.....|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4789999999999999999999998765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.23  E-value=9.3e-10  Score=37.55  Aligned_cols=25  Identities=36%  Similarity=0.728  Sum_probs=18.1

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHh
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      +||.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIH   26 (30)
Confidence            4677777777777777777777763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.75  E-value=1.1e-08  Score=34.59  Aligned_cols=29  Identities=34%  Similarity=0.460  Sum_probs=26.0

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK   38 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~   38 (72)
                      ++|.|..|++.|.....|..|++.|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47899999999999999999999988764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.74  E-value=1.5e-08  Score=35.03  Aligned_cols=29  Identities=34%  Similarity=0.761  Sum_probs=26.2

Q ss_pred             CCcccCc--ccchhccCcHHHHHhHHHhcCC
Q psy2647           9 EKPHKCQ--VCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         9 ~~~~~c~--~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +++|.|.  .|++.|.....|..|++.|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4689999  8999999999999999999875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.73  E-value=1e-08  Score=41.94  Aligned_cols=38  Identities=24%  Similarity=0.639  Sum_probs=33.0

Q ss_pred             hcCCCCccCCc--chhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          34 HTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        34 ~~~~~~~~c~~--c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ....++|.|..  |++.|.....|..|+++ |.+++||.|.
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   51 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCS   51 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHH-HSSSCSEECC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHh-cCCCCCccCC
Confidence            34567899988  99999999999999998 7888999873

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.72  E-value=8.9e-09  Score=34.64  Aligned_cols=28  Identities=50%  Similarity=0.872  Sum_probs=25.5

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++|.|..|++.|.....|..|++.|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            4789999999999999999999998875

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=1.4e-09  Score=36.03  Aligned_cols=23  Identities=30%  Similarity=0.865  Sum_probs=17.4

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ||.|..|++.|...+.|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            67777777777777777777766

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.71  E-value=1.1e-08  Score=34.32  Aligned_cols=28  Identities=43%  Similarity=0.688  Sum_probs=25.4

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++|.|..|++.|.....|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4789999999999999999999988765

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=5.5e-09  Score=42.16  Aligned_cols=35  Identities=20%  Similarity=0.426  Sum_probs=30.7

Q ss_pred             cCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          35 TGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        35 ~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      -+.+||.|..|++.|. ...|..|+++  .+++||.|.
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~--~~~~p~~C~   40 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ--CPRLPVACP   40 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH--CSSSEEECT
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH--cCCcCccCC
Confidence            3567999999999999 9999999997  888998874

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.67  E-value=1.1e-08  Score=34.29  Aligned_cols=27  Identities=48%  Similarity=0.844  Sum_probs=24.2

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhc
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      +++|.|..|++.|.....|..|++.|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999998765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.66  E-value=1.3e-08  Score=33.84  Aligned_cols=27  Identities=33%  Similarity=0.637  Sum_probs=24.0

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhc
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      +++|.|..|++.|.....|..|++.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468999999999999999999988763

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.66  E-value=1.7e-08  Score=34.64  Aligned_cols=28  Identities=46%  Similarity=0.922  Sum_probs=25.2

Q ss_pred             CcccCc--ccchhccCcHHHHHhHHHhcCC
Q psy2647          10 KPHKCQ--VCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        10 ~~~~c~--~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +||.|.  .|++.|.....|..|++.|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            478997  8999999999999999998875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=3.8e-09  Score=35.77  Aligned_cols=28  Identities=61%  Similarity=1.102  Sum_probs=25.0

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++|.|..|++.|.....|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4789999999999999999999988764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.62  E-value=1.1e-08  Score=34.17  Aligned_cols=26  Identities=23%  Similarity=0.600  Sum_probs=23.3

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHh
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKH   34 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~   34 (72)
                      ++||.|..|++.|.....|..|++.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            46899999999999999999998765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.05  E-value=4.2e-09  Score=35.82  Aligned_cols=29  Identities=38%  Similarity=0.641  Sum_probs=25.6

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +++|.|..|++.|.....|..|++.|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            36899999999999999999999888764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.60  E-value=2.5e-08  Score=32.99  Aligned_cols=26  Identities=35%  Similarity=0.722  Sum_probs=23.0

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~   36 (72)
                      +|.|..|++.|.....|..|++.|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            57899999999999999999988865

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.58  E-value=3.2e-08  Score=33.53  Aligned_cols=28  Identities=36%  Similarity=0.751  Sum_probs=24.5

Q ss_pred             CcccCcccchhccCcHHHHHh-HHHhcCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITH-SRKHTGF   37 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~-~~~~~~~   37 (72)
                      ++|.|..|++.|.....|..| +..|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            478999999999999999999 6777764

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.52  E-value=3.8e-08  Score=33.02  Aligned_cols=23  Identities=39%  Similarity=0.921  Sum_probs=16.9

Q ss_pred             CccCC--cchhhcCChHHHHHHHHH
Q psy2647          39 PFACD--LCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~--~c~~~~~~~~~l~~H~~~   61 (72)
                      +|.|.  .|++.|...+.|..|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            56677  777777777777777776

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=1.4e-08  Score=33.43  Aligned_cols=25  Identities=56%  Similarity=0.957  Sum_probs=22.4

Q ss_pred             CcccCcccchhccCcHHHHHhHHHh
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKH   34 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~   34 (72)
                      ++|.|..|++.|.....|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4789999999999999999998765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=4.6e-09  Score=43.65  Aligned_cols=44  Identities=14%  Similarity=0.248  Sum_probs=37.0

Q ss_pred             HHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          26 NLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        26 ~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      .|..|+..+.+.+++.|..|++.|. ...|..|+ . +.+++|+.|.
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~-~c~~~~~~C~   47 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-D-YCGARTELCG   47 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-H-HHHHCEEECS
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-h-HcCCCceEcc
Confidence            3566777788899999999999995 88999999 6 7888888773

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.41  E-value=8.6e-07  Score=35.75  Aligned_cols=49  Identities=24%  Similarity=0.394  Sum_probs=40.8

Q ss_pred             cccchhccCcHHHHHhHH-HhcCCC------CccCC--cchhhcCChHHHHHHHHHhc
Q psy2647          15 QVCGKAFSQSSNLITHSR-KHTGFK------PFACD--LCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        15 ~~c~~~~~~~~~l~~~~~-~~~~~~------~~~c~--~c~~~~~~~~~l~~H~~~~~   63 (72)
                      ..|++.|.+...|..|+. .|.+.+      +|.|.  .|+..+.....|..|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            348899999999999985 687655      78897  79998888999999998744

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.37  E-value=1.8e-07  Score=31.21  Aligned_cols=27  Identities=33%  Similarity=0.707  Sum_probs=23.8

Q ss_pred             CcccCc--ccchhccCcHHHHHhHHHhcC
Q psy2647          10 KPHKCQ--VCGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus        10 ~~~~c~--~c~~~~~~~~~l~~~~~~~~~   36 (72)
                      ++|.|.  .|++.|.....|..|++.|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            468899  999999999999999988753

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.80  E-value=2.2e-06  Score=38.74  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=23.5

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      .++|.++|.|..|++.|.....|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            46677888999999999999888888653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.72  E-value=5.3e-06  Score=37.53  Aligned_cols=30  Identities=37%  Similarity=0.591  Sum_probs=26.6

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHH
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRK   33 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~   33 (72)
                      .-++|.++|.|..|++.|.+...|..|.++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            346788999999999999999999999874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.02  E-value=0.00042  Score=31.46  Aligned_cols=51  Identities=24%  Similarity=0.475  Sum_probs=39.4

Q ss_pred             CcccCcccchhccCcHHHHHhHH--Hh-------------------------------cCCCCccCCcchhhcCChHHHH
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSR--KH-------------------------------TGFKPFACDLCGRAFQRKVDLR   56 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~--~~-------------------------------~~~~~~~c~~c~~~~~~~~~l~   56 (72)
                      +++.|..|...|.+...+..|..  .|                               .+...+-|..|...|.....+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            56889999999998888877762  12                               1133567999999999999998


Q ss_pred             HHHH
Q psy2647          57 RHKE   60 (72)
Q Consensus        57 ~H~~   60 (72)
                      .|..
T Consensus       111 ~H~~  114 (127)
T 1zu1_A          111 SHYI  114 (127)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            8864

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.88  E-value=0.00095  Score=25.16  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=12.0

Q ss_pred             CccCCcchhhcCChHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      .+.|+.|+..|.....|+.|+.
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            4455555555555555555555

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.72  E-value=0.0011  Score=25.04  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.8

Q ss_pred             CcccCcccchhccCcHHHHHhHHH
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRK   33 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~   33 (72)
                      .++.|+.|+..|.....|..|+..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            578999999999999999999973

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.92  E-value=0.012  Score=20.62  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=18.7

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhccC
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      .|.|+.|.+.|.....|..|-...|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            467778877777777777776544543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.83  E-value=0.0057  Score=28.88  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=35.5

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP   68 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p   68 (72)
                      +..|+.|+..+ ....+..|....-..+...|..|+..+. ...+..|..+ ..+..+
T Consensus       110 ~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~-~~~~~~  164 (170)
T 3hcs_A          110 LMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQN-CPLALE  164 (170)
T ss_dssp             EEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTT-CCC---
T ss_pred             eeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHh-CcChhh
Confidence            44677777665 4556777876555566778888887664 5567888876 555544

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=94.67  E-value=0.018  Score=24.10  Aligned_cols=51  Identities=22%  Similarity=0.455  Sum_probs=34.9

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHH
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH   58 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H   58 (72)
                      +..+..|.|..|+..++ +..+..|...-.+...+.|..|++.|.. .....|
T Consensus         5 ~~~MV~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A            5 SSGMVFFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             SCCCCEEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             CCceeEEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            44566788999998765 5557778654333446899999999974 334444

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=94.57  E-value=0.057  Score=19.13  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=14.4

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ...|..|.-+|.....+..|++.
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhhee
Confidence            45566666666666666666653

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=93.64  E-value=0.031  Score=23.86  Aligned_cols=22  Identities=41%  Similarity=0.850  Sum_probs=16.7

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhc
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      -+.|.+||+.|..   |..|+..+|
T Consensus        21 ~iiClecGK~fK~---LkRHL~~~h   42 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTTHH   42 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHHTT
T ss_pred             ceEecccchhhHH---HHHHHHHcc
Confidence            4678899998874   668988744

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=93.06  E-value=0.043  Score=24.22  Aligned_cols=12  Identities=50%  Similarity=1.240  Sum_probs=7.2

Q ss_pred             CcccCcccchhc
Q psy2647          10 KPHKCQVCGKAF   21 (72)
Q Consensus        10 ~~~~c~~c~~~~   21 (72)
                      .++.|..||..|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            355666666655

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=92.44  E-value=0.11  Score=25.59  Aligned_cols=26  Identities=27%  Similarity=0.564  Sum_probs=22.1

Q ss_pred             CCCccCCcchhhcCC-hHHHHHHHHHh
Q psy2647          37 FKPFACDLCGRAFQR-KVDLRRHKETQ   62 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~-~~~l~~H~~~~   62 (72)
                      ..+.+|..|+..|.. ...|+.|+..+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            458899999999976 89999998764

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=92.28  E-value=0.052  Score=26.63  Aligned_cols=25  Identities=36%  Similarity=0.701  Sum_probs=18.9

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      ..|.|..||..+.             +..|+.|+.|+.
T Consensus       170 ~~~~C~~CG~i~~-------------g~~p~~CP~C~~  194 (202)
T 1yuz_A          170 KFHLCPICGYIHK-------------GEDFEKCPICFR  194 (202)
T ss_dssp             CEEECSSSCCEEE-------------SSCCSBCTTTCC
T ss_pred             cEEEECCCCCEEc-------------CcCCCCCCCCCC
Confidence            4689999997754             145789999974

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=92.14  E-value=0.1  Score=20.93  Aligned_cols=31  Identities=19%  Similarity=0.393  Sum_probs=21.9

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQ   50 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~   50 (72)
                      ...|.|..|+..+...           ...+.+|..||....
T Consensus        19 ~v~Y~C~~Cg~~~~l~-----------~~~~iRC~~CG~RIL   49 (63)
T 3h0g_L           19 TMIYLCADCGARNTIQ-----------AKEVIRCRECGHRVM   49 (63)
T ss_dssp             CCCCBCSSSCCBCCCC-----------SSSCCCCSSSCCCCC
T ss_pred             CeEEECCCCCCeeecC-----------CCCceECCCCCcEEE
Confidence            3458999999877533           134689999997654

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=91.82  E-value=0.11  Score=17.32  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=15.5

Q ss_pred             CccCCcchhhcCChHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHK   59 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~   59 (72)
                      .+.|+.|.........++.|-
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~   23 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHV   23 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHH
Confidence            367888887777777777664

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.96  E-value=0.045  Score=22.76  Aligned_cols=27  Identities=33%  Similarity=0.645  Sum_probs=18.9

Q ss_pred             CccCCcchhhcC-------ChHHHHHHHHHhccC
Q psy2647          39 PFACDLCGRAFQ-------RKVDLRRHKETQHTE   65 (72)
Q Consensus        39 ~~~c~~c~~~~~-------~~~~l~~H~~~~~~~   65 (72)
                      .-.|..|++.+.       .-+.|.+|++..|.+
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            456888887776       246888898776643

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=90.40  E-value=0.075  Score=19.90  Aligned_cols=37  Identities=19%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      .+.|.|..|+..+.-...-.  +.....-..|.|+.|+.
T Consensus         2 m~~y~C~vCGyvyd~~~Gd~--t~f~~lP~dw~CP~Cg~   38 (46)
T 6rxn_A            2 MQKYVCNVCGYEYDPAEHDN--VPFDQLPDDWCCPVCGV   38 (46)
T ss_dssp             CCCEEETTTCCEECGGGGTT--CCGGGSCTTCBCTTTCC
T ss_pred             CCEEECCCCCeEEeCCcCCC--cchhhCCCCCcCcCCCC
Confidence            35688999998775321110  11111112368999974

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=90.35  E-value=0.3  Score=16.77  Aligned_cols=21  Identities=19%  Similarity=0.596  Sum_probs=13.8

Q ss_pred             cCCcchhhcCChHHHHHHHHH
Q psy2647          41 ACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        41 ~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      -|..|.+.++.-.+|..|.+-
T Consensus        11 hcrfckkkysdvknlikhire   31 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            466666666666677777664

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=90.30  E-value=0.16  Score=20.75  Aligned_cols=28  Identities=25%  Similarity=0.501  Sum_probs=18.7

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhh
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRA   48 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~   48 (72)
                      ..|.|..|+..|...           ...+..|..||..
T Consensus        27 v~Y~C~~CG~~~e~~-----------~~d~irCp~CG~R   54 (70)
T 1twf_L           27 LKYICAECSSKLSLS-----------RTDAVRCKDCGHR   54 (70)
T ss_dssp             CCEECSSSCCEECCC-----------TTSTTCCSSSCCC
T ss_pred             EEEECCCCCCcceeC-----------CCCCccCCCCCce
Confidence            457899998876543           1234678888863

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=88.93  E-value=0.19  Score=24.00  Aligned_cols=25  Identities=32%  Similarity=0.696  Sum_probs=18.5

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      ..|.|..||..+.             ++.|-.|+.|+.
T Consensus       137 ~~~~C~~CG~i~~-------------~~~p~~CP~Cg~  161 (170)
T 3pwf_A          137 KVYICPICGYTAV-------------DEAPEYCPVCGA  161 (170)
T ss_dssp             CEEECTTTCCEEE-------------SCCCSBCTTTCC
T ss_pred             CeeEeCCCCCeeC-------------CCCCCCCCCCCC
Confidence            4588999997764             245678999983

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=88.36  E-value=0.3  Score=19.76  Aligned_cols=57  Identities=18%  Similarity=0.361  Sum_probs=33.9

Q ss_pred             cccC-cccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          11 PHKC-QVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        11 ~~~c-~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      +-.| ..|+..+. +..+..|....-..++..|..|+..+. ...+..|..  .....+..|
T Consensus        16 ~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~-~~~l~~H~~--~Cp~~~v~C   73 (76)
T 2yuc_A           16 VIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFS-GEAYESHEG--MCPQESSGP   73 (76)
T ss_dssp             CCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCC-HHHHHHTTT--SCTTSSCCC
T ss_pred             ccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccC-HHHHHHHHh--HCCCCccCC
Confidence            3456 46776554 455666765333456778999988775 455666653  344455444

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=88.15  E-value=0.55  Score=21.30  Aligned_cols=29  Identities=17%  Similarity=0.542  Sum_probs=21.4

Q ss_pred             CCCcccCcccchhccCcHHHHHhHHHhcC
Q psy2647           8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus         8 ~~~~~~c~~c~~~~~~~~~l~~~~~~~~~   36 (72)
                      ...+..|-.|...|.....+..|++...+
T Consensus        12 e~~~~~CLFCd~~~~s~~~~l~H~k~~H~   40 (121)
T 1wir_A           12 GRQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CCCceeEecCCCcccCHHHHHHHHHHhcC
Confidence            34567788888888888888888876443

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=87.52  E-value=0.23  Score=19.24  Aligned_cols=21  Identities=29%  Similarity=0.703  Sum_probs=15.3

Q ss_pred             ccCCcchhhcCChHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      -.|..|+..|.....+..|+.
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            478888887777777777754

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=86.43  E-value=0.37  Score=21.52  Aligned_cols=26  Identities=19%  Similarity=0.654  Sum_probs=18.5

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCc-cCCcchhh
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPF-ACDLCGRA   48 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~-~c~~c~~~   48 (72)
                      .|.|..|+..|...            ..+. .|+.|+..
T Consensus        73 ~~~C~~CG~~~e~~------------~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           73 ELECKDCSHVFKPN------------ALDYGVCEKCHSK   99 (119)
T ss_dssp             EEECSSSSCEECSC------------CSTTCCCSSSSSC
T ss_pred             eEEcCCCCCEEeCC------------CCCCCcCccccCC
Confidence            47899999877641            3467 79988754

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=85.55  E-value=0.55  Score=16.89  Aligned_cols=13  Identities=23%  Similarity=0.634  Sum_probs=7.0

Q ss_pred             cccCcccchhccC
Q psy2647          11 PHKCQVCGKAFSQ   23 (72)
Q Consensus        11 ~~~c~~c~~~~~~   23 (72)
                      .+.|..|+..+..
T Consensus         9 ~~~C~~C~~~i~~   21 (39)
T 2i5o_A            9 QVPCEKCGSLVPV   21 (39)
T ss_dssp             EEECTTTCCEEEG
T ss_pred             CcccccccCcCCc
Confidence            3556666655544

>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6

Probab=84.81  E-value=0.28  Score=20.18  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=17.7

Q ss_pred             CccCCcchhhcC---ChHHHHHHHHHhcc
Q psy2647          39 PFACDLCGRAFQ---RKVDLRRHKETQHT   64 (72)
Q Consensus        39 ~~~c~~c~~~~~---~~~~l~~H~~~~~~   64 (72)
                      ...|..|.+.+.   .-++|.+|++.+|.
T Consensus        29 ~a~Ck~C~~~l~~~g~TSnL~rHL~~~H~   57 (73)
T 2ct5_A           29 KIYCRICMAQIAYSGNTSNLSYHLEKNHP   57 (73)
T ss_dssp             CCEETTTTEECCCCSSTHHHHHHHHHSCH
T ss_pred             EEECCCCCccccCCCChHhHHHHHHHHCH
Confidence            456788876654   34688888877664

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=84.28  E-value=0.18  Score=24.51  Aligned_cols=25  Identities=24%  Similarity=0.639  Sum_probs=17.7

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      .|.|..||..+...            ..|-.|+.|+.
T Consensus       155 ~~~C~~CG~~~~g~------------~~p~~CP~C~~  179 (191)
T 1lko_A          155 KWRCRNCGYVHEGT------------GAPELCPACAH  179 (191)
T ss_dssp             EEEETTTCCEEEEE------------ECCSBCTTTCC
T ss_pred             eEEECCCCCEeeCC------------CCCCCCCCCcC
Confidence            58899999876411            34558999974

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=84.17  E-value=0.064  Score=22.57  Aligned_cols=41  Identities=27%  Similarity=0.536  Sum_probs=24.4

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhc----------------CCCCccCCcchhhcCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHT----------------GFKPFACDLCGRAFQR   51 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~----------------~~~~~~c~~c~~~~~~   51 (72)
                      .+-.|+.||....+.. |...|..-.                .+-.|+|+.||.-|.-
T Consensus         7 ~~~~~PlCG~~L~W~e-LIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG   63 (95)
T 2k5c_A            7 HMAKCPICGSPLKWEE-LIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYG   63 (95)
T ss_dssp             -CEECSSSCCEECHHH-HHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEET
T ss_pred             ccccCCcCCCccCHHH-HHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhc
Confidence            3567999998766444 444433211                1234799999977753

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=83.89  E-value=0.46  Score=23.22  Aligned_cols=39  Identities=23%  Similarity=0.521  Sum_probs=24.9

Q ss_pred             HHHHHhHHHhc--CC-----CCccCCcchhhcCChHHHHHHHHHhccC
Q psy2647          25 SNLITHSRKHT--GF-----KPFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        25 ~~l~~~~~~~~--~~-----~~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      ..|..|++...  |.     .-|+|..|++- ....++..|++. |+.
T Consensus       133 grlieHlK~~~~~GqDyvFWQFYKCe~CgKY-vDId~~~~Hlk~-Hg~  178 (226)
T 2czr_A          133 AALVNHIKNNALAGQDYIFWQFYKCEECGKY-VDIENLEAHLRE-HGI  178 (226)
T ss_dssp             HHHHHHHHTTCCBTTTEEEEEEEECTTTCCE-EEGGGHHHHHHT-TTC
T ss_pred             HHHHHHHHhccccCcceEEEEEEehhhcCce-ecHHHHHHHHHH-cCc
Confidence            34666666422  21     23689999874 457788899997 554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-12
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-05
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	3e-11
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	4e-06
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	9e-11
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-10
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	1e-09
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.001
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	3e-09
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-09
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-08
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-09
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	9e-07
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	6e-09
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	2e-08
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	2e-08
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	4e-08
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	5e-08
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	7e-08
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-05
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	1e-07
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	1e-07
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	3e-07
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	5e-07
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	4e-05
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	7e-06
d2dmda2	26	g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {H	6e-05
d2dmda3	29	g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {	3e-04
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.001
d2epra1	35	g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [	0.002
d1a1ia3	28	g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus)	0.002

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (129), Expect = 2e-12
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 9  EKPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFACDL 44
           KP+ CQ CGK FS+  +L  H ++ HT  +P  C +
Sbjct: 3  GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
          KP+ C  CG+ F R   L  H +  HT  RP
Sbjct: 4  KPYICQSCGKGFSRPDHLNGHIKQVHTSERP 34

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (120), Expect = 3e-11
 Identities = 19/29 (65%), Positives = 22/29 (75%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          GEKP+ C  CGKAFS+SS L+ H R HTG
Sbjct: 4  GEKPYGCVECGKAFSRSSILVQHQRVHTG 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (87), Expect = 4e-06
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
          H+G KP+ C  CG+AF R   L +H+   HT
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQHQRV-HT 31

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (117), Expect = 9e-11
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          +KP +C++C + FS+S +L TH R HTG
Sbjct: 1  QKPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 30.7 bits (70), Expect = 0.001
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHT 64
          KPF C +C R F R   L  H  T HT
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRT-HT 27

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 1e-10
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
          +K + CQ CGK+F+  S    H   H G +P+ C +CG+ F+ K  L  H + 
Sbjct: 1  DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.2 bits (70), Expect = 0.002
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 7  HGEKPHKCQVCGKAFSQSSNLITHSRKH 34
           G +P+ C VCGK F    +L+ H + H
Sbjct: 26 LGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 46.1 bits (110), Expect = 1e-09
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
          +   C+VC +AF++  +L  H R HT  K
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 31.1 bits (71), Expect = 0.001
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHT 64
          + F C++C RAF R+  L+RH  + HT
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRS-HT 26

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (107), Expect = 3e-09
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
              CGK+F+   +L  H + H+  + + C+
Sbjct: 5  PEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (107), Expect = 3e-09
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          GEKP++C +C   F+QS  +  H  +   
Sbjct: 5  GEKPYECYICHARFTQSGTMKMHILQKHT 33

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (103), Expect = 2e-08
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
          R H+G KP+ C +C   F +   ++ H   +HTE
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE 34

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (107), Expect = 4e-09
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          GEKP+ C  C K F Q   L  H +++  
Sbjct: 5  GEKPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 9e-07
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
          R HTG KP+AC  C + F++K  L  H +  H  
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (105), Expect = 6e-09
 Identities = 18/26 (69%), Positives = 20/26 (76%)

Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHT 35
          KP+KC  CGKAFSQ+S LI H R HT
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIHT 26

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 2e-08
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
          K   C  C K F +S +L  H + H   K
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (101), Expect = 2e-08
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 10 KPHKC--QVCGKAFSQSSNLITHSRKHTG 36
          KPHKC  + C K++S+  NL TH R HTG
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (100), Expect = 4e-08
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 9  EKPHKCQV--CGKAFSQSSNLITHSRKHTG 36
          ++P+ C    C KAF ++ +LI H + H  
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (99), Expect = 5e-08
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 10 KPHKC--QVCGKAFSQSSNLITHSRKHTG 36
          +P+ C  + C + FS+S++L  H R HTG
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (98), Expect = 7e-08
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          G++P  C++C  AF+  +N   H + HT 
Sbjct: 4  GKRPFVCRICLSAFTTKANCARHLKVHTD 32

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (81), Expect = 2e-05
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
           +G +PF C +C  AF  K +  RH +  HT+
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKV-HTD 32

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (97), Expect = 1e-07
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 10 KPHKCQV--CGKAFSQSSNLITHSRKHTGFK 38
          +P  C    CGK F++S  L  H R HTG K
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (97), Expect = 1e-07
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 10 KPHKCQV--CGKAFSQSSNLITHSRKHTG 36
          KP +C    CGK FS   NL TH R HTG
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (94), Expect = 3e-07
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          G KP +C  C ++FS+S +L  H ++H  
Sbjct: 8  GIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (88), Expect = 2e-06
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
           +R  TG KPF C  C R+F R   L  H++  H  +
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR-HMLV 37

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (93), Expect = 5e-07
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 8  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
            + +KC  CGK+FS SS+L  H R HTG
Sbjct: 9  ERRRYKCDECGKSFSHSSDLSKHRRTHTG 37

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 4e-05
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
             +    + + CD CG++F    DL +H+ T HT
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HT 36

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 7e-06
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 10 KPHKCQV--CGKAFSQSSNLITHSRKHT 35
          +P+ C    C K F+QS+NL +H   H 
Sbjct: 1  RPYVCPFDGCNKKFAQSTNLKSHILTHA 28

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 6e-05
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 11 PHKCQVCGKAFSQSSNLITHSRKHTG 36
          PHKC+VCGK FS+   L TH R HTG
Sbjct: 1  PHKCEVCGKCFSRKDKLKTHMRCHTG 26

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 9  EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
          E+P KCQ+C  A   SS L  H R HTG
Sbjct: 1  ERPFKCQICPYASRNSSQLTVHLRSHTG 28

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.1 bits (70), Expect = 0.001
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 7  HGEKPHKCQVC--GKAFSQSSNLITHSRKHTGFK 38
            +K  +C      K F +  N+ +H + H   +
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.8 bits (69), Expect = 0.002
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
          K   C++CGK F    +L  H   H+G KP++
Sbjct: 4  KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 35

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 30.6 bits (69), Expect = 0.002
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 38 KPFACDLCGRAFQRKVDLRRHKET 61
          KPFACD+CGR F R  + +RH + 
Sbjct: 2  KPFACDICGRKFARSDERKRHTKI 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.86
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.6
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.6
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.57
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.57
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.56
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.56
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.56
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.5
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.5
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.48
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.46
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.44
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.43
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.43
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.4
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.4
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.36
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.36
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.35
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.35
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.34
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.33
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.3
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.23
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.2
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.17
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.17
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.14
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.11
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.09
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.99
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.97
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.95
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.91
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.88
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.87
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.69
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.66
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.63
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.55
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.47
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.43
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.31
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.3
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.28
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.24
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.24
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.24
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.23
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.18
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.1
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.07
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.05
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.03
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.99
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.97
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.96
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.96
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.91
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.9
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.9
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.78
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.7
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.7
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.69
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.68
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.63
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.63
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.62
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.47
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.45
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.15
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.12
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.04
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.94
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.9
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.74
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.5
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	96.44
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.44
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.79
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.41
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.21
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.48
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.23
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	93.67
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	93.57
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.06
d1fu9a_	36	U-shaped transcription factor, different fingers {	92.18
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.05
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	91.89
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.88
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	90.08
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	89.87
d1twfl_	46	RBP12 subunit of RNA polymerase II {Baker's yeast	88.64
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.51
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	88.19
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	87.21
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	87.13
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	86.58
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	86.57
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	86.51
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	83.82
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	83.19
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	82.37
d2ct5a1	60	Zinc finger BED domain-containing protein 1 {Human	82.12
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	81.39
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	80.66

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.7e-22  Score=78.78  Aligned_cols=53  Identities=34%  Similarity=0.764  Sum_probs=50.4

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCChHHHHHHHHHh
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      +++|.| .|++.|.....|..|+++|++++||.|..|++.|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            589999 59999999999999999999999999999999999999999999873

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-16  Score=57.52  Aligned_cols=36  Identities=36%  Similarity=0.682  Sum_probs=24.2

Q ss_pred             CCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          37 FKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ++||+|..||+.|...++|..|++..|++++||.|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            567777777777777777777755337777777663

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.9e-17  Score=58.49  Aligned_cols=35  Identities=31%  Similarity=0.725  Sum_probs=25.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHHhccC
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      |+..|++++||.|..||+.|...++|..|+++ |++
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~-HtG   37 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTG   37 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTT-TCC
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCcc-CCC
Confidence            55667777777777777777777777777777 443

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.3e-16  Score=54.51  Aligned_cols=28  Identities=43%  Similarity=0.883  Sum_probs=20.6

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |++++||+|..|+++|.+.+.|..|+++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccc
Confidence            5667777777777777777777777777

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.4e-16  Score=55.62  Aligned_cols=37  Identities=41%  Similarity=0.761  Sum_probs=33.9

Q ss_pred             CCCcccCcccchhccCcHHHHHhHH-HhcCCCCccCCc
Q psy2647           8 GEKPHKCQVCGKAFSQSSNLITHSR-KHTGFKPFACDL   44 (72)
Q Consensus         8 ~~~~~~c~~c~~~~~~~~~l~~~~~-~~~~~~~~~c~~   44 (72)
                      .++||.|..|++.|....+|..|++ .|++++||+|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4789999999999999999999986 699999999963

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.2e-16  Score=55.09  Aligned_cols=31  Identities=42%  Similarity=0.777  Sum_probs=22.3

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHHHhc
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      +|+|++||+|..|++.|...+.|..|+++|+
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            5677777777777777777777777777744

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.9e-16  Score=53.81  Aligned_cols=33  Identities=61%  Similarity=0.932  Sum_probs=31.4

Q ss_pred             cccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         5 ~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +|+|++||.|..|++.|.....|..|+++|+++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            689999999999999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.9e-16  Score=54.79  Aligned_cols=33  Identities=33%  Similarity=0.711  Sum_probs=24.2

Q ss_pred             HhcCCCCccCCcchhhcCChHHHHHHHHHhccC
Q psy2647          33 KHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        33 ~~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      +|+|++||+|..|++.|...++|..|++.+|++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            467777787877887887777777776655554

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.8e-16  Score=55.89  Aligned_cols=32  Identities=41%  Similarity=0.802  Sum_probs=23.4

Q ss_pred             hHHHhcCCCCccCCcchhhcCChHHHHHHHHH
Q psy2647          30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        30 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |++.|++++||+|..|++.|.+.++|..|+++
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhc
Confidence            45667777777777777777777777777776

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-15  Score=55.00  Aligned_cols=36  Identities=42%  Similarity=0.623  Sum_probs=33.8

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++.+|++++||.|..|++.|....+|..|+++|+|+
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            567899999999999999999999999999999885

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=6e-15  Score=52.16  Aligned_cols=31  Identities=39%  Similarity=0.822  Sum_probs=21.5

Q ss_pred             hcCCCCccCCcchhhcCChHHHHHHHHHhccC
Q psy2647          34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        34 ~~~~~~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      ++|++||+|..|++.|.+.++|..|+++ |++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~-Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV-HTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG-GTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc-cCC
Confidence            4567777777777777777777777776 443

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.1e-15  Score=52.29  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=31.8

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++|+|++||.|..|++.|.....|..|++.|.++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5799999999999999999999999999998765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.7e-14  Score=51.77  Aligned_cols=35  Identities=31%  Similarity=0.577  Sum_probs=32.2

Q ss_pred             ccccccCCCcccCcccchhccCcHHHHHhHHHhcC
Q psy2647           2 ISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus         2 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~   36 (72)
                      +.++|+|++||.|..|++.|....+|..|++.|..
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            46889999999999999999999999999998864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.46  E-value=3.1e-14  Score=48.39  Aligned_cols=29  Identities=41%  Similarity=0.948  Sum_probs=21.6

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHhccCCC
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      +||+|..|++.|...+.|..|+++ |++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~-HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc-ccCCC
Confidence            477788888888888888888887 55553

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.5e-14  Score=47.74  Aligned_cols=28  Identities=39%  Similarity=0.713  Sum_probs=20.6

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHhccCC
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      +||.|..|++.|.+.+.|..|+++ |+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~-Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT-HQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG-GGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc-cCCc
Confidence            467777777777777777777777 5554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=3.6e-14  Score=47.78  Aligned_cols=26  Identities=42%  Similarity=0.801  Sum_probs=19.9

Q ss_pred             CCCccCCcchhhcCChHHHHHHHHHh
Q psy2647          37 FKPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      ++||+|..|++.|...++|..|+++|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~H   26 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTH   26 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCc
Confidence            46778888888888888888887773

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=5.9e-14  Score=49.54  Aligned_cols=32  Identities=31%  Similarity=0.634  Sum_probs=30.1

Q ss_pred             ccCCCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           6 WHGEKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         6 ~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      |+|++||.|..|++.|....+|..|++.|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            68999999999999999999999999999864

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-13  Score=48.99  Aligned_cols=33  Identities=30%  Similarity=0.584  Sum_probs=29.4

Q ss_pred             ccccCCCcccCcccchhccCcHHHHHhHHHhcC
Q psy2647           4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus         4 ~~~~~~~~~~c~~c~~~~~~~~~l~~~~~~~~~   36 (72)
                      ++|+|++||.|+.|++.|....+|..|+..+.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            479999999999999999999999999875443

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1e-13  Score=45.70  Aligned_cols=25  Identities=36%  Similarity=0.832  Sum_probs=22.5

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHh
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      +||+|..||+.|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            5899999999999999999999984

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.36  E-value=2.3e-13  Score=46.21  Aligned_cols=29  Identities=38%  Similarity=0.729  Sum_probs=27.3

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK   38 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~   38 (72)
                      +||.|..|++.|.....|..|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999999874

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=2e-13  Score=45.89  Aligned_cols=28  Identities=50%  Similarity=1.011  Sum_probs=26.5

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~   36 (72)
                      ++||.|..|++.|....+|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.3e-13  Score=45.47  Aligned_cols=29  Identities=34%  Similarity=0.582  Sum_probs=27.3

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK   38 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~   38 (72)
                      +||.|..|++.|.+...|..|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999874

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=2.9e-14  Score=53.53  Aligned_cols=39  Identities=31%  Similarity=0.583  Sum_probs=31.0

Q ss_pred             HHHhHHHhcCCCCccCCc--chhhcCChHHHHHHHHHhccCCC
Q psy2647          27 LITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus        27 l~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      +..|+. +++++||.|..  |++.|...++|..|+++ |++++
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~-Htgek   47 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQT-HLEDR   47 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHH-HTTTC
T ss_pred             hcchhh-ccCCCCeECCcCCCCccccCchHHHhhccc-ccCCC
Confidence            445554 88889999976  99999999999999998 66654

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.3e-13  Score=47.60  Aligned_cols=26  Identities=31%  Similarity=0.639  Sum_probs=16.2

Q ss_pred             chhhcCChHHHHHHHHHhccCCCCCCC
Q psy2647          45 CGRAFQRKVDLRRHKETQHTEMRPVPV   71 (72)
Q Consensus        45 c~~~~~~~~~l~~H~~~~~~~~~p~~~   71 (72)
                      |++.|...+.|..|+++ |++++||.|
T Consensus         9 C~k~F~~~~~L~~H~r~-Htgekpy~C   34 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKL-HSDTRDYIC   34 (36)
T ss_dssp             TCCEESSHHHHHHHHHH-HHTSCCCSC
T ss_pred             CCCeeCChhHhccccCe-eCCCCCEeC
Confidence            66666666666666665 566666655

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.1e-13  Score=51.72  Aligned_cols=34  Identities=32%  Similarity=0.671  Sum_probs=31.1

Q ss_pred             CCCccCCcchhhcCChHHHHHHHHHhccCCCCCCCC
Q psy2647          37 FKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT   72 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~~~   72 (72)
                      ++||.|. ||+.|.....|..|+++ |++++||.|.
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~-Ht~ekpy~C~   34 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCG   34 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHH-HSCCCSEECT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhc-cccccCCcCC
Confidence            5799995 99999999999999998 8999999884

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.5e-13  Score=46.70  Aligned_cols=32  Identities=28%  Similarity=0.744  Sum_probs=29.5

Q ss_pred             ccCcc--cchhccCcHHHHHhHHHhcCCCCccCC
Q psy2647          12 HKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD   43 (72)
Q Consensus        12 ~~c~~--c~~~~~~~~~l~~~~~~~~~~~~~~c~   43 (72)
                      |.|..  |++.|.....|..|+++|++++||+|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56765  999999999999999999999999996

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.3e-12  Score=42.98  Aligned_cols=27  Identities=33%  Similarity=0.818  Sum_probs=20.3

Q ss_pred             CCccCCc--chhhcCChHHHHHHHHHhccC
Q psy2647          38 KPFACDL--CGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        38 ~~~~c~~--c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      +||.|..  |++.|...+.|..|+++ |++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS-HTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH-TTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc-CcC
Confidence            4777776  88888888888888887 544

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.5e-12  Score=41.94  Aligned_cols=26  Identities=69%  Similarity=1.085  Sum_probs=24.4

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhc
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      +||.|.+||+.|.....|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999884

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.7e-12  Score=42.61  Aligned_cols=27  Identities=44%  Similarity=0.979  Sum_probs=19.4

Q ss_pred             CCccCCc--chhhcCChHHHHHHHHHhccC
Q psy2647          38 KPFACDL--CGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        38 ~~~~c~~--c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      +||.|..  |++.|...+.|..|+++ |++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI-HTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH-HHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccc-cCC
Confidence            4677765  77888888888888777 443

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=4.6e-12  Score=47.42  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             cccCCCcccCcc--cchhccCcHHHHHhHHHhcCCC
Q psy2647           5 IWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFK   38 (72)
Q Consensus         5 ~~~~~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~~   38 (72)
                      .|.+++||.|..  |++.|....+|..|+++|++++
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            478999999987  9999999999999999999874

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.4e-11  Score=42.22  Aligned_cols=29  Identities=48%  Similarity=1.040  Sum_probs=20.4

Q ss_pred             CCccCC--cchhhcCChHHHHHHHHHhccCCC
Q psy2647          38 KPFACD--LCGRAFQRKVDLRRHKETQHTEMR   67 (72)
Q Consensus        38 ~~~~c~--~c~~~~~~~~~l~~H~~~~~~~~~   67 (72)
                      +||.|+  .|++.|...++|..|+++ |++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~-HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc-ccccC
Confidence            467774  477888888888888777 55543

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.4e-11  Score=41.29  Aligned_cols=28  Identities=57%  Similarity=0.968  Sum_probs=26.1

Q ss_pred             CcccCcc--cchhccCcHHHHHhHHHhcCC
Q psy2647          10 KPHKCQV--CGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        10 ~~~~c~~--c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +||.|..  |++.|....+|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899988  999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3e-11  Score=41.11  Aligned_cols=28  Identities=57%  Similarity=0.903  Sum_probs=25.9

Q ss_pred             CcccCcc--cchhccCcHHHHHhHHHhcCC
Q psy2647          10 KPHKCQV--CGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        10 ~~~~c~~--c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +||.|..  |++.|....+|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5899977  999999999999999999985

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.3e-10  Score=39.76  Aligned_cols=29  Identities=48%  Similarity=0.927  Sum_probs=26.1

Q ss_pred             CcccCc--ccchhccCcHHHHHhHHHhcCCC
Q psy2647          10 KPHKCQ--VCGKAFSQSSNLITHSRKHTGFK   38 (72)
Q Consensus        10 ~~~~c~--~c~~~~~~~~~l~~~~~~~~~~~   38 (72)
                      +||.|+  .|++.|....+|..|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            588995  59999999999999999999874

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=2.8e-10  Score=39.12  Aligned_cols=25  Identities=48%  Similarity=0.998  Sum_probs=17.4

Q ss_pred             CCCccCCc--chhhcCChHHHHHHHHH
Q psy2647          37 FKPFACDL--CGRAFQRKVDLRRHKET   61 (72)
Q Consensus        37 ~~~~~c~~--c~~~~~~~~~l~~H~~~   61 (72)
                      ++||.|..  |++.|...++|..|+++
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhh
Confidence            35677765  77777777777777776

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=1.3e-10  Score=39.11  Aligned_cols=24  Identities=46%  Similarity=1.042  Sum_probs=17.9

Q ss_pred             CCccCCc--chhhcCChHHHHHHHHH
Q psy2647          38 KPFACDL--CGRAFQRKVDLRRHKET   61 (72)
Q Consensus        38 ~~~~c~~--c~~~~~~~~~l~~H~~~   61 (72)
                      +||+|..  |++.|...+.|..|+++
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc
Confidence            4677755  77788777777777777

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.5e-10  Score=38.07  Aligned_cols=25  Identities=28%  Similarity=0.858  Sum_probs=20.9

Q ss_pred             CCccCCc--chhhcCChHHHHHHHHHh
Q psy2647          38 KPFACDL--CGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        38 ~~~~c~~--c~~~~~~~~~l~~H~~~~   62 (72)
                      +||.|..  |++.|...++|..|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            4788876  999999999999998883

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=1.1e-09  Score=37.59  Aligned_cols=29  Identities=34%  Similarity=0.776  Sum_probs=26.2

Q ss_pred             CCcccCcc--cchhccCcHHHHHhHHHhcCC
Q psy2647           9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         9 ~~~~~c~~--c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++||.|..  |++.|....+|..|++.|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57999988  999999999999999999753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=4.4e-10  Score=37.80  Aligned_cols=27  Identities=48%  Similarity=0.955  Sum_probs=24.8

Q ss_pred             CcccCcc--cchhccCcHHHHHhHHHhcC
Q psy2647          10 KPHKCQV--CGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus        10 ~~~~c~~--c~~~~~~~~~l~~~~~~~~~   36 (72)
                      +||.|..  |++.|....+|..|++.|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5899977  99999999999999999975

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.2e-09  Score=36.04  Aligned_cols=32  Identities=38%  Similarity=0.828  Sum_probs=22.4

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHhccCCCCCC
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP   70 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~~~~~~p~~   70 (72)
                      +...|..||+.|..-..|.+|.-. |++++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhkls-hs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG-SCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcc-cCCCCCCC
Confidence            345677777777777777777665 77777763

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-09  Score=36.05  Aligned_cols=26  Identities=42%  Similarity=0.806  Sum_probs=23.7

Q ss_pred             CcccCcc--cchhccCcHHHHHhHHHhc
Q psy2647          10 KPHKCQV--CGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus        10 ~~~~c~~--c~~~~~~~~~l~~~~~~~~   35 (72)
                      +||.|..  |++.|....+|..|++.|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899987  9999999999999999885

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=5e-09  Score=33.96  Aligned_cols=26  Identities=50%  Similarity=1.053  Sum_probs=20.3

Q ss_pred             CCCccCCcchhhcCChHHHHHHHHHh
Q psy2647          37 FKPFACDLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~~~~l~~H~~~~   62 (72)
                      ++||.|..||+.|.......+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            46888888888888888888887763

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.8e-08  Score=32.76  Aligned_cols=29  Identities=24%  Similarity=0.550  Sum_probs=23.9

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHhccCC
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      +||+|+.|.......++|+.|..+.|+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            47889999888888889999988777655

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.3e-09  Score=32.73  Aligned_cols=22  Identities=36%  Similarity=0.916  Sum_probs=11.8

Q ss_pred             ccCCcchhhcCChHHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      .+|..|++.|+....|..|++.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CccchhhhHhcchhHHHHHhhc
Confidence            3455555555555555555554

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.1e-08  Score=32.92  Aligned_cols=28  Identities=32%  Similarity=0.631  Sum_probs=21.4

Q ss_pred             CCCccCCcchhhcCChHHHHHHHHHhccC
Q psy2647          37 FKPFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      ++||+|+.|.......+.|..|++. |++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~-htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRS-HTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT-CCS
T ss_pred             CCcceeeecccccCCchheEEeeec-ccC
Confidence            3678888888887888888888887 544

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.8e-08  Score=32.61  Aligned_cols=24  Identities=38%  Similarity=0.903  Sum_probs=13.1

Q ss_pred             CCccCCcchhhcCChHHHHHHHHH
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      +||.|+.|...|..+..+.-|.+.
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrs   25 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRS   25 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCcccchHHHHhhccccceEeeec
Confidence            455555555555555555555554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.1e-08  Score=33.61  Aligned_cols=31  Identities=39%  Similarity=0.801  Sum_probs=28.4

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCc
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPF   40 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~   40 (72)
                      +...|..|++.|.....|.+|.-+|++++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            4567999999999999999999999999997

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.1e-08  Score=31.53  Aligned_cols=26  Identities=65%  Similarity=1.195  Sum_probs=23.5

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~   36 (72)
                      |+.|+.|++.|+.+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56899999999999999999998875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6.2e-08  Score=31.78  Aligned_cols=29  Identities=41%  Similarity=0.811  Sum_probs=26.4

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++||.|+.|...|+.+..+.-|.++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            57999999999999999999999998764

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.2e-07  Score=30.56  Aligned_cols=26  Identities=31%  Similarity=0.732  Sum_probs=18.7

Q ss_pred             ccCCcchhhcCChHHHHHHHHHhccCC
Q psy2647          40 FACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      |.|+.|+.....++-|+.|.+. |+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs-HT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT-HTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSSC
T ss_pred             ccccccCcccCCHHHHHHHHHH-hcCC
Confidence            5677777777777777777777 5554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=7.6e-08  Score=31.12  Aligned_cols=27  Identities=37%  Similarity=0.880  Sum_probs=24.0

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhc
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      ++||.|..|++.|.......+|.+.|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            579999999999999999999988764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=4.6e-07  Score=28.52  Aligned_cols=25  Identities=32%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             cCCcchhhcCChHHHHHHHHHhccCC
Q psy2647          41 ACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus        41 ~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      +|+.|.+.|.+..-|+.|-+. |+++
T Consensus         2 qcp~c~k~f~skyylkvhnr~-htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK-HTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH-HSSC
T ss_pred             cCcchHHHHHHhHhhhhcccc-ccCC
Confidence            678888888888888888886 5554

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2e-07  Score=29.93  Aligned_cols=29  Identities=52%  Similarity=0.804  Sum_probs=25.3

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++||.|..|...-.....|..|.+.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            47999999998888889999999988863

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.5e-07  Score=32.20  Aligned_cols=25  Identities=32%  Similarity=0.937  Sum_probs=20.7

Q ss_pred             CCCCccCCcchhhcCChHHHHHHHH
Q psy2647          36 GFKPFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        36 ~~~~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      |-+||.|..|++.|....++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            5678999999999998888888854

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.9e-07  Score=29.39  Aligned_cols=21  Identities=38%  Similarity=0.846  Sum_probs=12.9

Q ss_pred             cCCcchhhcCChHHHHHHHHH
Q psy2647          41 ACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        41 ~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      .|..||+.|.-.+.|++|+-+
T Consensus         4 vc~ecgkaf~essklkrh~lv   24 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLV   24 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGG
T ss_pred             hHHHHhHHHHHHHHHHHHhhc
Confidence            455666666666666666555

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=6.8e-07  Score=28.43  Aligned_cols=24  Identities=29%  Similarity=0.638  Sum_probs=20.3

Q ss_pred             CCccCCcchhhcCChHHHHHHHHH
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      +|++|..|.......++|..|+|+
T Consensus         2 kp~kck~cdyaaadsssl~kh~ri   25 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRI   25 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccccccchhcchhhHhhhhhc
Confidence            578888888888888888888887

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.9e-07  Score=29.07  Aligned_cols=26  Identities=54%  Similarity=0.839  Sum_probs=23.5

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCC
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +.|.+|++.|.-...|++|+-.|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            57999999999999999999998874

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.1e-07  Score=28.90  Aligned_cols=27  Identities=33%  Similarity=0.550  Sum_probs=24.4

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCC
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFK   38 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~   38 (72)
                      |.|+.|+....-.+.|+.|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999998763

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=7.4e-07  Score=29.13  Aligned_cols=26  Identities=38%  Similarity=0.924  Sum_probs=18.8

Q ss_pred             CCccCCc--chhhcCChHHHHHHHHHhc
Q psy2647          38 KPFACDL--CGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        38 ~~~~c~~--c~~~~~~~~~l~~H~~~~~   63 (72)
                      +||.|..  |++++..+++|..|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            4676754  7788888888888877644

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.10  E-value=2.1e-06  Score=29.93  Aligned_cols=24  Identities=25%  Similarity=0.715  Sum_probs=15.4

Q ss_pred             CCccCCcchhhcCChHHHHHHHHH
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      +.|+|..|++.|.+...|.-|++.
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~   27 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNV   27 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CccCCCCCCCccCCcccccchHhh
Confidence            346666666666666666666665

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.07  E-value=1.1e-06  Score=27.18  Aligned_cols=21  Identities=43%  Similarity=0.887  Sum_probs=10.0

Q ss_pred             cCCcchhhcCChHHHHHHHHH
Q psy2647          41 ACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        41 ~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      +|..|.++|.-.+.|.+|+++
T Consensus         2 kcglcersfveksalsrhqrv   22 (26)
T d1znfa_           2 KCGLCERSFVEKSALSRHQRV   22 (26)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGG
T ss_pred             cccchHHHHHHHHHHHHHHHh
Confidence            344444444444444444444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=7e-07  Score=29.44  Aligned_cols=26  Identities=38%  Similarity=0.936  Sum_probs=19.9

Q ss_pred             CCccCCc--chhhcCChHHHHHHH-HHhcc
Q psy2647          38 KPFACDL--CGRAFQRKVDLRRHK-ETQHT   64 (72)
Q Consensus        38 ~~~~c~~--c~~~~~~~~~l~~H~-~~~~~   64 (72)
                      +||.|+.  |.+.|+..+....|+ |+ |.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT-Hs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT-HS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT-TC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc-cc
Confidence            4777765  888998888888887 66 44

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.03  E-value=2.9e-06  Score=27.20  Aligned_cols=25  Identities=28%  Similarity=0.731  Sum_probs=20.1

Q ss_pred             CCccCC--cchhhcCChHHHHHHHHHh
Q psy2647          38 KPFACD--LCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        38 ~~~~c~--~c~~~~~~~~~l~~H~~~~   62 (72)
                      .||.|+  .|++.|...+.|++|..+|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            477776  4889999999999998873

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.99  E-value=1.6e-06  Score=28.54  Aligned_cols=27  Identities=44%  Similarity=0.908  Sum_probs=18.7

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhccC
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQHTE   65 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~~~   65 (72)
                      ||.|..|++.|..+..+.+|++.-|++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            577777888887777777776543443

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.97  E-value=3.5e-06  Score=29.34  Aligned_cols=29  Identities=21%  Similarity=0.407  Sum_probs=25.6

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      .+.|.|..|++.|.+..+|-.|++.|..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            35699999999999999999999988654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.96  E-value=2.4e-06  Score=26.43  Aligned_cols=24  Identities=38%  Similarity=0.761  Sum_probs=21.4

Q ss_pred             ccCcccchhccCcHHHHHhHHHhc
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      |.|..|.++|..+..|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            579999999999999999998763

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.3e-06  Score=26.55  Aligned_cols=27  Identities=26%  Similarity=0.680  Sum_probs=19.3

Q ss_pred             CCccCCcchhhcCChHHHHHHHHHhcc
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      +||+|..|...-.+.++|..|.+.-|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            367788887777777888877765454

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=8.9e-06  Score=26.24  Aligned_cols=26  Identities=38%  Similarity=0.534  Sum_probs=22.8

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhc
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      +||.|..|........+|..|+.+..
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            58999999999999999999998743

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=6.8e-06  Score=25.77  Aligned_cols=26  Identities=46%  Similarity=0.749  Sum_probs=23.5

Q ss_pred             cCcccchhccCcHHHHHhHHHhcCCC
Q psy2647          13 KCQVCGKAFSQSSNLITHSRKHTGFK   38 (72)
Q Consensus        13 ~c~~c~~~~~~~~~l~~~~~~~~~~~   38 (72)
                      .|+.|.+.|.++.-|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58999999999999999999999874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.4e-06  Score=29.12  Aligned_cols=26  Identities=31%  Similarity=0.664  Sum_probs=22.9

Q ss_pred             cCCCcccCcccchhccCcHHHHHhHH
Q psy2647           7 HGEKPHKCQVCGKAFSQSSNLITHSR   32 (72)
Q Consensus         7 ~~~~~~~c~~c~~~~~~~~~l~~~~~   32 (72)
                      +|-+||.|..|++.|-+...+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            47799999999999999999888864

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=9.7e-06  Score=25.02  Aligned_cols=22  Identities=36%  Similarity=0.853  Sum_probs=17.4

Q ss_pred             CccCCcchhhcCChHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      ||+|..|...|.+...|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6788888888888888877753

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.4e-05  Score=26.01  Aligned_cols=26  Identities=31%  Similarity=0.678  Sum_probs=22.2

Q ss_pred             CcccCcc--cchhccCcHHHHHhHHHhc
Q psy2647          10 KPHKCQV--CGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus        10 ~~~~c~~--c~~~~~~~~~l~~~~~~~~   35 (72)
                      +||.|..  |++.|....+|..|++.+.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            5788876  9999999999999998644

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.4e-05  Score=27.05  Aligned_cols=26  Identities=38%  Similarity=0.715  Sum_probs=18.6

Q ss_pred             CCCccC--CcchhhcCChHHHHHHHHHh
Q psy2647          37 FKPFAC--DLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        37 ~~~~~c--~~c~~~~~~~~~l~~H~~~~   62 (72)
                      ++||.|  +.|+.+|.....|..|+..|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            567777  45777777777777777654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.69  E-value=1.8e-05  Score=25.43  Aligned_cols=26  Identities=42%  Similarity=0.825  Sum_probs=14.0

Q ss_pred             cccCcc--cchhccCcHHHHHhHHHhcC
Q psy2647          11 PHKCQV--CGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus        11 ~~~c~~--c~~~~~~~~~l~~~~~~~~~   36 (72)
                      ||.|..  |++.|.+...|.+|.-+|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            444433  55566665556555555554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.7e-05  Score=25.08  Aligned_cols=26  Identities=46%  Similarity=0.731  Sum_probs=23.2

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhc
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      +|+.|..|+..-.....|..|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999999888999999998874

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=2.2e-05  Score=25.16  Aligned_cols=23  Identities=30%  Similarity=0.831  Sum_probs=18.5

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ||.|..|...|....+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57788888888888888888764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=2.2e-05  Score=24.75  Aligned_cols=22  Identities=41%  Similarity=0.979  Sum_probs=17.2

Q ss_pred             CccCCcchhhcCChHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      ||+|..||+.+-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5788888888878888877754

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=3.2e-05  Score=24.53  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=16.8

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |.+|+.|..+.+....|..|.|+
T Consensus         2 pekc~ecsyscsskaalrvh~ri   24 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERI   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG
T ss_pred             CccCcccccccCcHHHHHHhhcc
Confidence            45677777777777777777776

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3.9e-05  Score=24.59  Aligned_cols=24  Identities=29%  Similarity=0.681  Sum_probs=21.7

Q ss_pred             cccCcccchhccCcHHHHHhHHHh
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKH   34 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~   34 (72)
                      ||.|..|...|..+.+|..|+.+-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            688999999999999999999853

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=7.8e-05  Score=23.82  Aligned_cols=22  Identities=36%  Similarity=0.966  Sum_probs=10.5

Q ss_pred             ccCCcchhhcCChHHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |.|..|...|...-.|..|+..
T Consensus         5 ftcs~cqe~f~rrmelr~hmvs   26 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVS   26 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHH
T ss_pred             EEeHHHHHHHHHHHhheeeeec
Confidence            4444444444444444444444

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00043  Score=22.04  Aligned_cols=29  Identities=34%  Similarity=0.604  Sum_probs=25.2

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCC
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~   37 (72)
                      +..|.|..|...|...-.|..|+-+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34588999999999999999999999874

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00024  Score=24.47  Aligned_cols=28  Identities=36%  Similarity=0.815  Sum_probs=23.7

Q ss_pred             CCCcccC--cccchhccCcHHHHHhHHHhc
Q psy2647           8 GEKPHKC--QVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus         8 ~~~~~~c--~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      .++||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4789999  559999999999999987664

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00019  Score=24.17  Aligned_cols=20  Identities=35%  Similarity=0.532  Sum_probs=13.0

Q ss_pred             chhccCcHHHHHhHHHhcCC
Q psy2647          18 GKAFSQSSNLITHSRKHTGF   37 (72)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~   37 (72)
                      ++.|.....|..|++.|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            34566667777777777654

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00024  Score=23.75  Aligned_cols=23  Identities=35%  Similarity=0.964  Sum_probs=19.0

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      .|.|..|++.|..+..+.+|...
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            47899999999998888888654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00042  Score=25.07  Aligned_cols=23  Identities=35%  Similarity=0.832  Sum_probs=18.9

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      .+.|..|++.|.....|.+|...
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQ   28 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQ   28 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHh
Confidence            47788888888888888888775

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00056  Score=21.50  Aligned_cols=25  Identities=40%  Similarity=0.700  Sum_probs=19.8

Q ss_pred             CccCCcchhhcCChHHHHHHHHHhc
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      .++|+.|+.....++.|..|++--|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            3788889888888889888887533

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.74  E-value=0.00041  Score=22.96  Aligned_cols=22  Identities=36%  Similarity=0.688  Sum_probs=17.2

Q ss_pred             CccCCcchhhcCChHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      .|.|..||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4678888888888888887765

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.001  Score=24.04  Aligned_cols=26  Identities=31%  Similarity=0.649  Sum_probs=22.6

Q ss_pred             cccCcccchhccCcHHHHHhHHHhcC
Q psy2647          11 PHKCQVCGKAFSQSSNLITHSRKHTG   36 (72)
Q Consensus        11 ~~~c~~c~~~~~~~~~l~~~~~~~~~   36 (72)
                      -+.|..|++.|.....|..|...|..
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCc
Confidence            47899999999999999999887753

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0026  Score=20.17  Aligned_cols=22  Identities=41%  Similarity=0.671  Sum_probs=16.3

Q ss_pred             CcchhhcCChHHHHHHHHHhcc
Q psy2647          43 DLCGRAFQRKVDLRRHKETQHT   64 (72)
Q Consensus        43 ~~c~~~~~~~~~l~~H~~~~~~   64 (72)
                      +.|++.|+.+.-|..|....|-
T Consensus         6 ~gc~kifsnrqylnhh~kyqh~   27 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQHI   27 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGGG
T ss_pred             CCchhhhccHHHHHhHHHHHHh
Confidence            4688888888888877776553

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.44  E-value=0.002  Score=23.19  Aligned_cols=28  Identities=32%  Similarity=0.666  Sum_probs=23.4

Q ss_pred             CCCCccCCcchhhcCChHHHHHHHHHhc
Q psy2647          36 GFKPFACDLCGRAFQRKVDLRRHKETQH   63 (72)
Q Consensus        36 ~~~~~~c~~c~~~~~~~~~l~~H~~~~~   63 (72)
                      .+.|-.|+.|+....+..+|.+|+.+-|
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            3568899999999999999999988644

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.79  E-value=0.0061  Score=18.60  Aligned_cols=20  Identities=30%  Similarity=0.730  Sum_probs=9.7

Q ss_pred             cCCcchhhcCChHHHHHHHH
Q psy2647          41 ACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        41 ~c~~c~~~~~~~~~l~~H~~   60 (72)
                      .|+.|-+-|....++..|..
T Consensus         3 pcp~cfkeftrkdnm~ahvk   22 (26)
T d2drpa2           3 PCPFCFKEFTRKDNMTAHVK   22 (26)
T ss_dssp             ECTTTCCEESCHHHHHHHHH
T ss_pred             CCchhhHHhccccCceEEEE
Confidence            44445455555544444443

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.41  E-value=0.0086  Score=18.55  Aligned_cols=20  Identities=30%  Similarity=0.740  Sum_probs=15.8

Q ss_pred             CcchhhcCChHHHHHHHHHh
Q psy2647          43 DLCGRAFQRKVDLRRHKETQ   62 (72)
Q Consensus        43 ~~c~~~~~~~~~l~~H~~~~   62 (72)
                      ..|++.|..-..|+.|+..|
T Consensus         7 e~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeecc
Confidence            35888888888888888763

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.21  E-value=0.013  Score=18.84  Aligned_cols=17  Identities=29%  Similarity=0.710  Sum_probs=8.1

Q ss_pred             chhhcCChHHHHHHHHH
Q psy2647          45 CGRAFQRKVDLRRHKET   61 (72)
Q Consensus        45 c~~~~~~~~~l~~H~~~   61 (72)
                      |+..|.....|..|+-.
T Consensus        11 C~A~ynk~wkL~AHLck   27 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSK   27 (31)
T ss_dssp             GCCEESSHHHHHHHHHH
T ss_pred             cchhhccchhhhHHhhh
Confidence            44444444445545443

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.0035  Score=24.50  Aligned_cols=23  Identities=43%  Similarity=0.778  Sum_probs=15.3

Q ss_pred             CcccCcccchhccCcHHHHHhHH
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSR   32 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~   32 (72)
                      ..|.|..|++.|.+...|..|.+
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTT
T ss_pred             CEEecccccCccCCHHHHHHHHc
Confidence            34667777777777777766654

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.014  Score=18.31  Aligned_cols=18  Identities=28%  Similarity=0.606  Sum_probs=15.0

Q ss_pred             cchhhcCChHHHHHHHHH
Q psy2647          44 LCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        44 ~c~~~~~~~~~l~~H~~~   61 (72)
                      .|.+.|...+.+..|+.+
T Consensus         8 gC~K~Frd~saMRKHlht   25 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHT   25 (28)
T ss_dssp             TCCCEESSHHHHHHHHGG
T ss_pred             cHHHHhhchHHHHHHhhc
Confidence            488889888888888877

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.67  E-value=0.027  Score=18.68  Aligned_cols=24  Identities=21%  Similarity=0.599  Sum_probs=13.9

Q ss_pred             CCCccCCcchhhcCChHHHHHHHH
Q psy2647          37 FKPFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        37 ~~~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      +..|.|..|.+.+...+++-+|--
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHH
Confidence            344566666666666666655544

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=93.57  E-value=0.014  Score=19.90  Aligned_cols=26  Identities=35%  Similarity=0.709  Sum_probs=18.0

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      ++-|.|..||...             .++.|-.|+.|+.
T Consensus         3 ~~~~vC~vCGyi~-------------~g~~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYIH-------------KGEDFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCEE-------------ESSCCSBCTTTCC
T ss_pred             CCEEECCCCCCEe-------------eCCCCCcCCCCCC
Confidence            4568899998643             3455778998874

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.06  E-value=0.017  Score=19.83  Aligned_cols=26  Identities=31%  Similarity=0.697  Sum_probs=18.0

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      ++-|.|..||..+             .++.|-.|+.|+.
T Consensus         3 ~~~~~C~vCG~i~-------------~g~~P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYTA-------------VDEAPEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCEE-------------ESCCCSBCTTTCC
T ss_pred             CcEEECCCCCCEe-------------cCCCCCcCCCCCC
Confidence            3457888898643             2355778999874

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.18  E-value=0.085  Score=17.66  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=13.5

Q ss_pred             CCcchhhcCChHHHHHHHHH
Q psy2647          42 CDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        42 c~~c~~~~~~~~~l~~H~~~   61 (72)
                      |..|.-.|...+.++.|++.
T Consensus        11 C~~CDI~Fn~~~T~~aHKk~   30 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHHH
T ss_pred             HhhCCceehhHHHHHHHHHh
Confidence            56666677777777777663

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.026  Score=21.63  Aligned_cols=36  Identities=22%  Similarity=0.483  Sum_probs=23.9

Q ss_pred             CCcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647           9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus         9 ~~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      ...|.|+.|++.|.....+.-   .......|.|..|+.
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHT   47 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCC
T ss_pred             CCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCC
Confidence            456999999998876554332   222234688988864

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.082  Score=17.53  Aligned_cols=23  Identities=22%  Similarity=0.626  Sum_probs=17.0

Q ss_pred             CCccCCcchhhcCChHHHHHHHH
Q psy2647          38 KPFACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        38 ~~~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      +.|.|..|-+-..+...+.+|+.
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHH
Confidence            45778888777777777777764

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=0.11  Score=16.34  Aligned_cols=21  Identities=24%  Similarity=0.724  Sum_probs=11.7

Q ss_pred             ccCCcchhhcCChHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKE   60 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~   60 (72)
                      |.|..|++...+....+-|.-
T Consensus         3 ftc~hcgkqlks~~gmkyhvm   23 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEe
Confidence            455566666655555555543

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.08  E-value=0.12  Score=15.63  Aligned_cols=19  Identities=21%  Similarity=0.434  Sum_probs=11.2

Q ss_pred             cCCcchhhcCChHHHHHHH
Q psy2647          41 ACDLCGRAFQRKVDLRRHK   59 (72)
Q Consensus        41 ~c~~c~~~~~~~~~l~~H~   59 (72)
                      .|+.|...|.++.....|.
T Consensus         2 vcpycslrf~sp~lk~ehe   20 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEHE   20 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHhh
Confidence            4666766666665544443

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.078  Score=20.31  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=12.3

Q ss_pred             CccCCcchhhcCChHHHHHHHHH
Q psy2647          39 PFACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        39 ~~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      .|+|..|...|.....|..|+..
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~   40 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNI   40 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHh
Confidence            45555555555555555555544

>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: RNA polymerase subunits
family: RBP12 subunit of RNA polymerase II
domain: RBP12 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.64  E-value=0.17  Score=18.01  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=20.7

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCC
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQR   51 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~   51 (72)
                      ..|.|..|+.....+.           ..+..|..||.....
T Consensus         3 v~YiCgeCg~~~~l~~-----------~d~irCreCG~RIlY   33 (46)
T d1twfl_           3 LKYICAECSSKLSLSR-----------TDAVRCKDCGHRILL   33 (46)
T ss_dssp             CCEECSSSCCEECCCT-----------TSTTCCSSSCCCCCB
T ss_pred             eEEEcccCCCceEeCC-----------CCcEEeccCCcEEEE
Confidence            4688999986554322           347889999865543

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.51  E-value=0.19  Score=15.74  Aligned_cols=18  Identities=22%  Similarity=0.525  Sum_probs=11.8

Q ss_pred             cchhhcCChHHHHHHHHH
Q psy2647          44 LCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        44 ~c~~~~~~~~~l~~H~~~   61 (72)
                      .|...|....+++.|...
T Consensus         9 ~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           9 GCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             SCCCEESSHHHHHHHHHH
T ss_pred             CcceEEeehHHHHHHHhh
Confidence            366677777777777554

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=88.19  E-value=0.06  Score=18.37  Aligned_cols=33  Identities=12%  Similarity=0.082  Sum_probs=18.7

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCCh
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRK   52 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~~   52 (72)
                      +.|+.|+..|-..        .......-.|..||..+.++
T Consensus         3 ~vc~~cG~~Yh~~--------~~pPk~~g~CD~cg~~L~qR   35 (37)
T d2ak3a2           3 WIHPGSGRVYNIE--------FNPPKTMGIDDLTGEPLVQR   35 (37)
T ss_dssp             EEETTTTEEEETT--------TBCCSSTTBCTTTCCBCBCC
T ss_pred             eeeCCcCChhhhc--------cCCccccCCccCCCCcCEec
Confidence            4577777766322        22234455788887655443

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=87.21  E-value=0.089  Score=18.73  Aligned_cols=36  Identities=19%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhcCCCCccCCcchh
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGR   47 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~   47 (72)
                      +.|.|..|+..|.-...  .-+.-..-..-|.|+.|+.
T Consensus         2 ~~y~C~~CgyiYd~~~G--dgt~Fe~LP~dw~CP~C~a   37 (45)
T d6rxna_           2 QKYVCNVCGYEYDPAEH--DNVPFDQLPDDWCCPVCGV   37 (45)
T ss_dssp             CCEEETTTCCEECGGGG--TTCCGGGSCTTCBCTTTCC
T ss_pred             CCeEeCCCCeEECcccC--CCCCHHHCCCCCCCcCCCC
Confidence            45889999987753221  0111111123478999874

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.13  E-value=0.16  Score=21.39  Aligned_cols=10  Identities=40%  Similarity=1.129  Sum_probs=5.0

Q ss_pred             ccCcccchhc
Q psy2647          12 HKCQVCGKAF   21 (72)
Q Consensus        12 ~~c~~c~~~~   21 (72)
                      -.|..||..|
T Consensus        68 p~CrkCGfvF   77 (105)
T d2gmga1          68 AQCRKCGFVF   77 (105)
T ss_dssp             CBBTTTCCBC
T ss_pred             hhhhhcCCee
Confidence            3455555544

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=86.58  E-value=0.14  Score=23.61  Aligned_cols=25  Identities=24%  Similarity=0.533  Sum_probs=18.7

Q ss_pred             ccCCcchhhcCChHHHHHHHHHhccCC
Q psy2647          40 FACDLCGRAFQRKVDLRRHKETQHTEM   66 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~~~~~~   66 (72)
                      |+|..|++- ....++..|++. |+++
T Consensus       147 YKCe~CgKY-vDie~~~~H~k~-HG~~  171 (218)
T d2czra1         147 YKCEECGKY-VDIENLEAHLRE-HGIK  171 (218)
T ss_dssp             EECTTTCCE-EEGGGHHHHHHT-TTCC
T ss_pred             eehhhcCce-ecHHHHHHHHHH-cCcc
Confidence            689999874 457788899997 5543

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.57  E-value=0.14  Score=17.10  Aligned_cols=22  Identities=27%  Similarity=0.622  Sum_probs=16.9

Q ss_pred             ccCCcchhhcCChHHHHHHHHH
Q psy2647          40 FACDLCGRAFQRKVDLRRHKET   61 (72)
Q Consensus        40 ~~c~~c~~~~~~~~~l~~H~~~   61 (72)
                      ..|..|-+.|.+.-++.+|+.-
T Consensus         4 ltclecmrtfkssfsiwrhqve   25 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVE   25 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhe
Confidence            4677888888888888888753

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.51  E-value=0.37  Score=20.81  Aligned_cols=26  Identities=15%  Similarity=0.528  Sum_probs=19.5

Q ss_pred             CcccCcccchhccCcHHHHHhHHHhc
Q psy2647          10 KPHKCQVCGKAFSQSSNLITHSRKHT   35 (72)
Q Consensus        10 ~~~~c~~c~~~~~~~~~l~~~~~~~~   35 (72)
                      .+-.|-.|...|.+...+..|++...
T Consensus        14 ~~~~CLFCd~~f~s~~~~l~H~k~~H   39 (121)
T d1wira_          14 QHTPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSS
T ss_pred             ccceecccCCccCCHHHHHHHHHHhh
Confidence            44568888888888888888887644

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.19  E-value=0.21  Score=17.87  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=17.0

Q ss_pred             ccCcccchhccCcHHHHHhHH
Q psy2647          12 HKCQVCGKAFSQSSNLITHSR   32 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~   32 (72)
                      -.|..|+-.|+.+..+..|+.
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhh
Confidence            579999988888888887764

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.37  E-value=0.2  Score=17.10  Aligned_cols=32  Identities=13%  Similarity=0.197  Sum_probs=17.5

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhcCC
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQR   51 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~~~   51 (72)
                      ..|..|+..|-..        .......-.|..|+..+.+
T Consensus         3 r~C~~cG~~Yh~~--------~~ppk~~g~CD~cg~~L~q   34 (38)
T d1akya2           3 LIHPASGRSYHKI--------FNPPKEDMKDDVTGEALVQ   34 (38)
T ss_dssp             EECTTTCCEEETT--------TBCCSSTTBCTTTCCBCBC
T ss_pred             cCCcCccchhhhh--------ccCcCcCCccCCCCCEeee
Confidence            3577777766322        1222334567777765544

>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: BED zinc finger
domain: Zinc finger BED domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.12  E-value=0.21  Score=18.78  Aligned_cols=28  Identities=25%  Similarity=0.450  Sum_probs=19.1

Q ss_pred             CccCCcchhhcCC---hHHHHHHHHHhccCC
Q psy2647          39 PFACDLCGRAFQR---KVDLRRHKETQHTEM   66 (72)
Q Consensus        39 ~~~c~~c~~~~~~---~~~l~~H~~~~~~~~   66 (72)
                      ...|..|.+.+..   -++|..|++.+|..+
T Consensus        22 ~i~C~lC~k~i~~~GNTtNl~~HL~~rHp~e   52 (60)
T d2ct5a1          22 KIYCRICMAQIAYSGNTSNLSYHLEKNHPEE   52 (60)
T ss_dssp             CCEETTTTEECCCCSSTHHHHHHHHHSCHHH
T ss_pred             chHHHHHHHHhcccCCcchHHHHHHhcCHHH
Confidence            3567788766543   478888988767544

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.66  E-value=0.16  Score=17.04  Aligned_cols=30  Identities=33%  Similarity=0.749  Sum_probs=16.1

Q ss_pred             ccCcccchhccCcHHHHHhHHHhcCCCCccCCcchhhc
Q psy2647          12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAF   49 (72)
Q Consensus        12 ~~c~~c~~~~~~~~~l~~~~~~~~~~~~~~c~~c~~~~   49 (72)
                      +.|..|+..|-...        ......-.|..|+..+
T Consensus         3 r~C~~CG~~Yh~~~--------~pPk~~g~CD~cG~~L   32 (35)
T d1zina2           3 RICRNCGATYHLIF--------HPPAKPGVCDKCGGEL   32 (35)
T ss_dssp             EEETTTCCEEETTT--------BCCSSTTBCTTTCCBE
T ss_pred             cCCcCcCchhcccc--------CCCCCCCcCCCCCCCc
Confidence            35777776653221        2233445777777543