Psyllid ID: psy2667

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
MACLIKSAVFKFPHVTLQLAVPKLLPSSGVATSRFYSSKPRAPVHNDETKIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHA
ccccccccccccccccHHcccccccccccccccEEccccccccccccccccccEEEEcccccHHHHHHHHHHHHHccccccccEEEEEEEccEEEEcccccHHHcccHHHHHHcccEEEEEccccccEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHcccEEEEcccccEEEcccccccccccccccHHHHHHHHHcccccccEEEccccccccccccccccccEEEEEccEEEEEEEEEEEccHHHHHccccccc
ccEEEcccHHHHHHHHHHHHcHcHccccHHHHHHHHHccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEEcccEEEEEcccccHHHHcHHHHHHcccEEEEEcccccEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEcccccEEEcccccccccEEEEccccHHHHHHHccccccEEEccccHHEEccccccEEEccHHHHcccccEEccEEEEcccHHHHHHHHcccc
macliksavfkfphvtlqlavpkllpssgvatsrfysskprapvhndetkiqKSVFISQSSNIFTNLALEDWLyknfdftnHHVMLLWRnnpcvvigrhqnpwqetnlgvlydeGIEIArrnsgggtvyhdsgnlnvtfftprerynrrnNLEIISRTLEREWNIqteintredivydgkykviIPTLISYQTYQEIISRTLEREWNIqteintredivydgkykisgtaaklgrpssyhhcTLLVNVNksrlsqslhhha
MACLIKSAVFKFPHVTLQLavpkllpssgVATSRfysskprapvhndetkiQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSgggtvyhdsgnlnvtfftprerynrrnNLEIisrtlerewniqteintredivydgKYKVIIPTLISYQTYQEIISRTLEREWNIqteintredivydgKYKISGTAaklgrpssyHHCTLLVNVNKSRLSQSLHHHA
MACLIKSAVFKFPHVTLQLAVPKLLPSSGVATSRFYSSKPRAPVHNDETKIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHA
**CLIKSAVFKFPHVTLQLAVPKLLPSSGV*********************QKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNV*************
********VFKFPHVTLQLA*****************************KIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH**
MACLIKSAVFKFPHVTLQLAVPKLLPSSGVATSRFYSSKPRAPVHNDETKIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSR*********
MACLIKSAVFKFPHVTLQLAVPKLLPSSGVATSRFYSSKPRAPVHNDETKIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MACLIKSAVFKFPHVTLQLAVPKLLPSSGVATSRFYSSKPRAPVHNDETKIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query261 2.2.26 [Sep-21-2011]
Q8VCM4 373 Lipoyltransferase 1, mito yes N/A 0.613 0.428 0.387 2e-38
O46419 373 Lipoyltransferase 1, mito yes N/A 0.613 0.428 0.382 6e-38
Q9Y234 373 Lipoyltransferase 1, mito yes N/A 0.613 0.428 0.377 1e-37
P60809 339 Lipoate-protein ligase A yes N/A 0.616 0.474 0.369 9e-30
O13629 363 Putative lipoate-protein yes N/A 0.582 0.418 0.345 8e-25
Q1QEC2 339 Lipoate-protein ligase A yes N/A 0.613 0.471 0.320 7e-24
A1JPK8 338 Lipoate-protein ligase A yes N/A 0.620 0.479 0.313 7e-22
Q7VR65 337 Lipoate-protein ligase A yes N/A 0.620 0.480 0.333 1e-21
B1JJ36 338 Lipoate-protein ligase A yes N/A 0.620 0.479 0.323 3e-21
A4TIN0 338 Lipoate-protein ligase A yes N/A 0.620 0.479 0.323 3e-21
>sp|Q8VCM4|LIPT_MOUSE Lipoyltransferase 1, mitochondrial OS=Mus musculus GN=Lipt1 PE=2 SV=1 Back     alignment and function desciption
 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 116/204 (56%), Gaps = 44/204 (21%)

Query: 55  VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
           +  S S++++ NLA EDW++ +       ++ LWRN+P VVIGRHQNPWQE NL ++  E
Sbjct: 33  ILQSISNDVYENLAFEDWIHDHIHLEGKPILFLWRNSPSVVIGRHQNPWQECNLHLMRQE 92

Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLER-EWNIQTEINTRE 173
           GI++ARR SGGG VYHD GN+N+TFFT + +Y+R  NL++I R L   +  +  +   + 
Sbjct: 93  GIKLARRKSGGGAVYHDMGNINLTFFTTKTKYDRMENLKLIVRALNAVQPQLDVQPTKKF 152

Query: 174 DIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKL 233
           D++ DG++                                           KISGTA+K+
Sbjct: 153 DLLLDGQF-------------------------------------------KISGTASKI 169

Query: 234 GRPSSYHHCTLLVNVNKSRLSQSL 257
           GR ++YHHCTLL + N++ LS SL
Sbjct: 170 GRTAAYHHCTLLCSTNRTALSSSL 193
Catalyzes the transfer of the lipoyl group from lipoyl-AMP to the specific lysine residue of lipoyl domains of lipoate-dependent enzymes.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -
>sp|O46419|LIPT_BOVIN Lipoyltransferase 1, mitochondrial OS=Bos taurus GN=LIPT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y234|LIPT_HUMAN Lipoyltransferase 1, mitochondrial OS=Homo sapiens GN=LIPT1 PE=1 SV=1 Back     alignment and function description
>sp|P60809|LPLA_BDEBA Lipoate-protein ligase A OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=lplA PE=3 SV=1 Back     alignment and function description
>sp|O13629|LPLA_SCHPO Putative lipoate-protein ligase A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aim22 PE=3 SV=1 Back     alignment and function description
>sp|Q1QEC2|LPLA_PSYCK Lipoate-protein ligase A OS=Psychrobacter cryohalolentis (strain K5) GN=lplA PE=3 SV=1 Back     alignment and function description
>sp|A1JPK8|LPLA_YERE8 Lipoate-protein ligase A OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=lplA PE=3 SV=1 Back     alignment and function description
>sp|Q7VR65|LPLA_BLOFL Lipoate-protein ligase A OS=Blochmannia floridanus GN=lplA PE=3 SV=1 Back     alignment and function description
>sp|B1JJ36|LPLA_YERPY Lipoate-protein ligase A OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lplA PE=3 SV=1 Back     alignment and function description
>sp|A4TIN0|LPLA_YERPP Lipoate-protein ligase A OS=Yersinia pestis (strain Pestoides F) GN=lplA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
328787381 400 PREDICTED: lipoyltransferase 1, mitochon 0.685 0.447 0.558 6e-63
380014012 395 PREDICTED: lipoyltransferase 1, mitochon 0.685 0.453 0.554 3e-62
156553799 388 PREDICTED: lipoyltransferase 1, mitochon 0.639 0.430 0.557 2e-61
383857102 393 PREDICTED: lipoyltransferase 1, mitochon 0.628 0.417 0.560 4e-61
195150289 404 GL11408 [Drosophila persimilis] gi|19410 0.708 0.457 0.519 5e-61
125807873 404 GA21085 [Drosophila pseudoobscura pseudo 0.708 0.457 0.519 6e-61
350417636 412 PREDICTED: lipoyltransferase 1, mitochon 0.685 0.434 0.540 1e-60
340712273 395 PREDICTED: lipoyltransferase 1, mitochon 0.685 0.453 0.536 4e-60
307194199 389 Lipoyltransferase 1, mitochondrial [Harp 0.697 0.467 0.52 9e-60
195380812 410 GJ21426 [Drosophila virilis] gi|19414395 0.636 0.404 0.557 1e-59
>gi|328787381|ref|XP_624104.3| PREDICTED: lipoyltransferase 1, mitochondrial-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 146/222 (65%), Gaps = 43/222 (19%)

Query: 36  YSSKPRAPVHNDETKIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVV 95
           YS+       +    I+KSVFISQS++IFTNLALEDW YKN+DF NHH++LLWRNNPCVV
Sbjct: 31  YSTSFNEKQDDPNNSIKKSVFISQSTDIFTNLALEDWFYKNYDFKNHHILLLWRNNPCVV 90

Query: 96  IGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEII 155
           IGRHQNPW E N  +    GI +ARRNSGGGTVYHD+GNLN++FFTPRERYNR+ NLEII
Sbjct: 91  IGRHQNPWIEHNSQLAEKRGIVLARRNSGGGTVYHDTGNLNLSFFTPRERYNRKYNLEII 150

Query: 156 SRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTR 215
           +R L REW I+ E+N REDIV +G                                    
Sbjct: 151 TRALYREWGIEAEVNKREDIVVEG------------------------------------ 174

Query: 216 EDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 257
                  K KISGTAAKLGRP++YHHCTLLVNVNK+ L  +L
Sbjct: 175 -------KCKISGTAAKLGRPNAYHHCTLLVNVNKTALYLAL 209

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380014012|ref|XP_003691038.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Apis florea] Back     alignment and taxonomy information
>gi|156553799|ref|XP_001601889.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383857102|ref|XP_003704045.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|195150289|ref|XP_002016087.1| GL11408 [Drosophila persimilis] gi|194109934|gb|EDW31977.1| GL11408 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|125807873|ref|XP_001360544.1| GA21085 [Drosophila pseudoobscura pseudoobscura] gi|54635716|gb|EAL25119.1| GA21085 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|350417636|ref|XP_003491519.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340712273|ref|XP_003394686.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307194199|gb|EFN76616.1| Lipoyltransferase 1, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|195380812|ref|XP_002049155.1| GJ21426 [Drosophila virilis] gi|194143952|gb|EDW60348.1| GJ21426 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
DICTYBASE|DDB_G0287107 369 DDB_G0287107 "Lipoyltransferas 0.563 0.398 0.409 1e-34
UNIPROTKB|E1BVP4 373 LIPT1 "Uncharacterized protein 0.482 0.337 0.496 1.5e-33
UNIPROTKB|E2RPI5 381 LIPT1 "Uncharacterized protein 0.544 0.372 0.465 1.5e-33
UNIPROTKB|O46419 373 LIPT1 "Lipoyltransferase 1, mi 0.547 0.383 0.420 4.1e-33
ZFIN|ZDB-GENE-060929-112 401 lipt1 "lipoyltransferase 1" [D 0.482 0.314 0.519 6.7e-33
UNIPROTKB|C9JUU5251 LIPT1 "Lipoyltransferase 1, mi 0.513 0.533 0.467 2.9e-32
UNIPROTKB|Q9Y234 373 LIPT1 "Lipoyltransferase 1, mi 0.513 0.359 0.467 2.9e-32
RGD|1310276 371 Lipt1 "lipoyltransferase 1" [R 0.482 0.339 0.472 1.3e-31
MGI|MGI:3645211 373 Lipt1 "lipoyltransferase 1" [M 0.482 0.337 0.464 5.4e-31
UNIPROTKB|C9JW10135 LIPT1 "Lipoyltransferase 1, mi 0.413 0.8 0.527 2.7e-29
DICTYBASE|DDB_G0287107 DDB_G0287107 "Lipoyltransferase 1, mitochondrial" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 289 (106.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
 Identities = 63/154 (40%), Positives = 91/154 (59%)

Query:    33 SRFYSSKPRAP---VHNDETKIQKSVFI--SQSSNIFTNLALEDWLYKNFDFTNHHVMLL 87
             +R+YS+        + N E   +KS+ I  S ++N   N+A EDWL+K FD  N   + L
Sbjct:    31 NRYYSTTTTTTTTTIGNKENNGKKSIKIYKSTTNNALFNIATEDWLFKEFDL-NKQTLYL 89

Query:    88 WRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYN 147
             WRN+P VVIGR+QNP++E +L  + ++ + +ARR SGGG VYHD GN N TF +P   Y+
Sbjct:    90 WRNSPTVVIGRYQNPYKECHLQRMEEDNVVLARRYSGGGAVYHDLGNTNFTFLSPTADYS 149

Query:   148 RRNNLEIISRTLEREW-NIQTEINTREDIVYDGK 180
             +  N  II  +L     +   E + R DI+  GK
Sbjct:   150 KDRNTNIIINSLSSIGISGPIEASGRNDIIVQGK 183
GO:0016740 "transferase activity" evidence=IEA
GO:0009249 "protein lipoylation" evidence=IEA
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
UNIPROTKB|E1BVP4 LIPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPI5 LIPT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O46419 LIPT1 "Lipoyltransferase 1, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-112 lipt1 "lipoyltransferase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|C9JUU5 LIPT1 "Lipoyltransferase 1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y234 LIPT1 "Lipoyltransferase 1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310276 Lipt1 "lipoyltransferase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:3645211 Lipt1 "lipoyltransferase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|C9JW10 LIPT1 "Lipoyltransferase 1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
TIGR00545 324 TIGR00545, lipoyltrans, lipoyltransferase and lipo 5e-32
COG0095248 COG0095, LplA, Lipoate-protein ligase A [Coenzyme 8e-30
PRK03822 338 PRK03822, lplA, lipoate-protein ligase A; Provisio 3e-29
PRK14061 562 PRK14061, PRK14061, unknown domain/lipoate-protein 6e-24
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 5e-19
>gnl|CDD|161920 TIGR00545, lipoyltrans, lipoyltransferase and lipoate-protein ligase Back     alignment and domain information 
 Score =  119 bits (300), Expect = 5e-32
 Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 43/204 (21%)

Query: 55  VFISQSSNIFTNLALEDWLYKNFDFTNH-HVMLLWRNNPCVVIGRHQNPWQETNLGVLYD 113
           +  S S++ + NLALE++L+K F  T    V+L W+N   +VIGR+QN W E NL  L +
Sbjct: 3   ILTSPSNDPYFNLALEEYLFKEFPKTQRGKVLLFWQNANTIVIGRNQNTWAEVNLKELEE 62

Query: 114 EGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTRE 173
           + + + RR SGGG V+HD GN+  +F TP++     N                 +I TR 
Sbjct: 63  DNVNLFRRFSGGGAVFHDLGNICFSFITPKDGKEFEN----------------AKIFTR- 105

Query: 174 DIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKL 233
                     +I  L S                 ++ E++ R D+V DG+ KISG+A  +
Sbjct: 106 ---------NVIKALNSL---------------GVEAELSGRNDLVVDGR-KISGSAYYI 140

Query: 234 GRPSSYHHCTLLVNVNKSRLSQSL 257
            +   +HH TLL + + S+L++ L
Sbjct: 141 TKDRGFHHGTLLFDADLSKLAKYL 164

One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus [Protein fate, Protein modification and repair]. Length = 324
>gnl|CDD|223173 COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|179655 PRK03822, lplA, lipoate-protein ligase A; Provisional Back     alignment and domain information
>gnl|CDD|172552 PRK14061, PRK14061, unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 261
PRK03822 338 lplA lipoate-protein ligase A; Provisional 100.0
PRK14061 562 unknown domain/lipoate-protein ligase A fusion pro 100.0
TIGR00545 324 lipoyltrans lipoyltransferase and lipoate-protein 100.0
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 100.0
KOG3159|consensus 336 100.0
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.81
PRK14348221 lipoate-protein ligase B; Provisional 98.72
PRK14343235 lipoate-protein ligase B; Provisional 98.63
PRK14342213 lipoate-protein ligase B; Provisional 98.6
PRK14341213 lipoate-protein ligase B; Provisional 98.51
PRK14347209 lipoate-protein ligase B; Provisional 98.4
PRK14345234 lipoate-protein ligase B; Provisional 98.38
PRK14344223 lipoate-protein ligase B; Provisional 98.33
PRK14346230 lipoate-protein ligase B; Provisional 98.32
PRK14349220 lipoate-protein ligase B; Provisional 98.3
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 98.23
COG0321221 LipB Lipoate-protein ligase B [Coenzyme metabolism 97.98
KOG0325|consensus226 97.22
PRK08330236 biotin--protein ligase; Provisional 95.4
PTZ00275 285 biotin-acetyl-CoA-carboxylase ligase; Provisional 95.07
PRK08477211 biotin--protein ligase; Provisional 94.75
PTZ00276245 biotin/lipoate protein ligase; Provisional 94.54
PRK05935190 biotin--protein ligase; Provisional 84.7
COG0340 238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 82.78
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 82.76
>PRK03822 lplA lipoate-protein ligase A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-46  Score=351.86  Aligned_cols=164  Identities=36%  Similarity=0.652  Sum_probs=150.2

Q ss_pred             ceeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceee
Q psy2667          51 IQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYH  130 (261)
Q Consensus        51 ~~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~h  130 (261)
                      .+++++.+.+.||+.|||+||+|++++..+ +|+|++|+|+|||+|||||++|.|+|+++|+++||+||||+||||||||
T Consensus         2 ~~~~~i~s~~~dp~~NlAlEe~Ll~~~~~~-~~~l~~w~n~p~VvIGr~Qn~~~Evn~~~~~~~gI~vvRR~SGGGAVyh   80 (338)
T PRK03822          2 STLRLLISDSYDPWFNLAVEECIFRQMPAT-QRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFH   80 (338)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHhcCCCC-CCEEEEEcCCCeEEECCCCCHHHHhCHHHHHHcCCcEEEECCCCceEEE
Confidence            467889999999999999999999998755 6899999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEEEecCCCCCccchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeE
Q psy2667         131 DSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQT  210 (261)
Q Consensus       131 d~G~ln~Sli~p~~~~~~~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a  210 (261)
                      |+|++|||++.+...++.....++|+++| +.|||+                                           +
T Consensus        81 D~Gnl~~s~i~~~~~~~~~~~~~~ii~aL-~~lGi~-------------------------------------------a  116 (338)
T PRK03822         81 DLGNTCFTFMAGKPEYDKTISTSIVLNAL-NSLGVS-------------------------------------------A  116 (338)
T ss_pred             cCCCcEEEEEeCCCccCHHHHHHHHHHHH-HHcCCc-------------------------------------------e
Confidence            99999999999876666666678888888 677765                                           5


Q ss_pred             EecCCCCeeeC----CceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCCC
Q psy2667         211 EINTREDIVYD----GKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH  260 (261)
Q Consensus       211 ~~~g~~Dl~v~----Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~~  260 (261)
                      +.+++|||+++    || ||+||||++.++++|||||||+++|++.|.++|++.
T Consensus       117 ~~~~rnDi~v~~~~g~k-KisGsAq~~~~~~~l~HGTlL~~~d~~~l~~~L~~~  169 (338)
T PRK03822        117 EASGRNDLVVKTAEGDR-KVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPD  169 (338)
T ss_pred             eECCCccEEEecCCCCc-EEEEEeeeeeCCeEEEEEEEEecCCHHHHHHHhCCC
Confidence            66899999995    68 999999999999999999999999999999999875

>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>KOG3159|consensus Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14341 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14347 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14346 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14349 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information
>KOG0325|consensus Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
2e5a_A 347 Crystal Structure Of Bovine Lipoyltransferase In Co 5e-39
3a7a_A 337 Crystal Structure Of E. Coli Lipoate-protein Ligase 5e-21
1x2g_A 337 Crystal Structure Of Lipate-Protein Ligase A From E 5e-20
1vqz_A 341 Crystal Structure Of A Putative Lipoate-Protein Lig 2e-16
3r07_A285 Structural Analysis Of An Archaeal Lipoylation Syst 3e-11
2art_A262 Crystal Structure Of Lipoate-Protein Ligase A Bound 5e-11
2ars_A262 Crystal Structure Of Lipoate-Protein Ligase A From 6e-10
>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex With Lipoyl-Amp Length = 347 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 119/204 (58%), Gaps = 44/204 (21%)
Query: 55  VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
           +  S S++++ NLA+EDW++ + +     V+ LWRN+P VVIGRHQNPWQE NL ++ +E
Sbjct: 7   ILQSISNDVYHNLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREE 66
Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLER-EWNIQTEINTRE 173
           G+++ARR SGGGTVYHD GN+N+TFFT +++Y+R  NL+++ R L+    ++  +   R 
Sbjct: 67  GVKLARRRSGGGTVYHDMGNINLTFFTTKKKYDRMENLKLVVRALKAVHPHLDVQATKRF 126
Query: 174 DIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKL 233
           D++ DG++                                           KISGTA+K+
Sbjct: 127 DLLLDGQF-------------------------------------------KISGTASKI 143
Query: 234 GRPSSYHHCTLLVNVNKSRLSQSL 257
           GR ++YHHCTLL   + + LS  L
Sbjct: 144 GRNAAYHHCTLLCGTDGTFLSSLL 167
>pdb|3A7A|A Chain A, Crystal Structure Of E. Coli Lipoate-protein Ligase A In Complex With Octyl-amp And Apoh-protein Length = 337 Back     alignment and structure
>pdb|1X2G|A Chain A, Crystal Structure Of Lipate-Protein Ligase A From Escherichia Coli Length = 337 Back     alignment and structure
>pdb|1VQZ|A Chain A, Crystal Structure Of A Putative Lipoate-Protein Ligase A (Sp_1160) From Streptococcus Pneumoniae Tigr4 At 1.99 A Resolution Length = 341 Back     alignment and structure
>pdb|3R07|A Chain A, Structural Analysis Of An Archaeal Lipoylation System. A Bi-Partite Lipoate Protein Ligase And Its E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 285 Back     alignment and structure
>pdb|2ART|A Chain A, Crystal Structure Of Lipoate-Protein Ligase A Bound With Lipoyl-Amp Length = 262 Back     alignment and structure
>pdb|2ARS|A Chain A, Crystal Structure Of Lipoate-Protein Ligase A From Thermoplasma Acidophilum Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 1e-62
2e5a_A 347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2e-55
1vqz_A 341 Lipoate-protein ligase, putative; class II AARS an 2e-55
3a7r_A 337 Lipoate-protein ligase A; adenylate-forming enzyme 8e-55
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 5e-32
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 7e-32
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Length = 262 Back     alignment and structure
 Score =  196 bits (501), Expect = 1e-62
 Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 37/209 (17%)

Query: 53  KSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLY 112
           + + +    N   +LA ++ +Y++F + +  ++  +R++  V+IG  Q   +E +L  + 
Sbjct: 4   RLLLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMK 63

Query: 113 DEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLE---REWNIQTEI 169
             GI +ARR +GGG VYHD G+LN +     +  +  +    ++  +    R   +    
Sbjct: 64  KNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARP 123

Query: 170 NTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGT 229
               D+                                    +N + DI+   K KI G 
Sbjct: 124 GELNDVS---------------------------------IPVNKKTDIMAGEK-KIMGA 149

Query: 230 AAKLGRPSSYHHCTLLVNVNKSRLSQSLH 258
           A  + + +   H  +LV+ +   LS  L 
Sbjct: 150 AGAMRKGAKLWHAAMLVHTDLDMLSAVLK 178
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Length = 347 Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Length = 341 Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Length = 337 Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Length = 288 Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Length = 288 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 100.0
2e5a_A 347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 100.0
3a7r_A 337 Lipoate-protein ligase A; adenylate-forming enzyme 100.0
1vqz_A 341 Lipoate-protein ligase, putative; class II AARS an 100.0
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 100.0
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 100.0
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 99.91
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 95.28
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 93.13
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 92.9
1bia_A 321 BIRA bifunctional protein; transcription regulatio 91.75
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 91.09
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 90.76
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 88.23
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
Probab=100.00  E-value=2.5e-42  Score=310.64  Aligned_cols=175  Identities=26%  Similarity=0.471  Sum_probs=152.6

Q ss_pred             cceeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCcee
Q psy2667          50 KIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVY  129 (261)
Q Consensus        50 ~~~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~  129 (261)
                      |..++++.+.+.|+++|||+|++|++++..+.+|+|+||+++|+|+||++|+++.|+|+++|++.||+|+||+|||||||
T Consensus         1 m~~~~~i~~~~~~~~~nlA~ee~Ll~~~~~~~~~~l~l~~~~p~v~lG~~q~~~~e~~~~~~~~~gi~vvrR~sGGgavy   80 (262)
T 2c8m_A            1 MEGRLLLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVY   80 (262)
T ss_dssp             CEEEEECCCCTTCHHHHHHHHHHHHHHCCTTSCCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEE
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHHcccCCCCcEEEEEcCCCEEEECCCCChhHHhHHHHHHhcCCcEEEECCCCceEE
Confidence            44677777888999999999999999987665799999999999999999999999999999999999999999999999


Q ss_pred             ecCCceEEEEEecCCCCCc----cchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhc
Q psy2667         130 HDSGNLNVTFFTPRERYNR----RNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLERE  205 (261)
Q Consensus       130 hd~G~ln~Sli~p~~~~~~----~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~  205 (261)
                      ||+|+||||++.|.+..+.    ....+.|+++| +++||++++++..                                
T Consensus        81 hd~G~l~ys~i~~~~~~~~~~~y~~l~~~ii~~l-~~lGi~~~~~~~~--------------------------------  127 (262)
T 2c8m_A           81 HDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSL-RILGLDARPGELN--------------------------------  127 (262)
T ss_dssp             ECTTEEEEEEEEECSSCCHHHHHHHHHHHHHHHH-HHTTCCCEECCBC--------------------------------
T ss_pred             eCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHH-HHcCCCccccccc--------------------------------
Confidence            9999999999998865432    33567788888 8899987665321                                


Q ss_pred             cceeEEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCC
Q psy2667         206 WNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH  259 (261)
Q Consensus       206 ~g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~  259 (261)
                       +.++++++++||+++|| ||+|+||++.+++++|||||+++.|++.|.++|++
T Consensus       128 -~~~a~~~g~~dv~v~g~-Ki~G~aqr~~~~~~lhhgtllv~~d~~~~~~~l~~  179 (262)
T 2c8m_A          128 -DVSIPVNKKTDIMAGEK-KIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKV  179 (262)
T ss_dssp             -CTTSSSSBTTSEEETTE-EEEEEEEEEETTEEEEEEEEESSCCHHHHHHHTC-
T ss_pred             -CCcceECCcCcEEECCe-EEEEeeeEEeCCEEEEEEEEEecCCHHHHHHHhCC
Confidence             00156779999999999 99999999999999999999999999999999985
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 261
d2c8ma1256 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Ther 5e-37
d1vqza2241 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-te 1e-34
d1x2ga2246 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal do 4e-34
d2p0la1269 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Stre 9e-34
d2p5ia1265 d.104.1.3 (A:14-278) Hypothetical protein BH3822 { 2e-28
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Thermoplasma acidophilum [TaxId: 2303]

 Score =  129 bits (324), Expect = 5e-37
 Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 37/208 (17%)

Query: 55  VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
           + +    N   +LA ++ +Y++F + +  ++  +R++  V+IG  Q   +E +L  +   
Sbjct: 6   LLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKN 65

Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTL---EREWNIQTEINT 171
           GI +ARR +GGG VYHD G+LN +     +  +  +    ++  +    R   +      
Sbjct: 66  GIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARPGE 125

Query: 172 REDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAA 231
             D+      K                                    +  G+ KI G A 
Sbjct: 126 LNDVSIPVNKK----------------------------------TDIMAGEKKIMGAAG 151

Query: 232 KLGRPSSYHHCTLLVNVNKSRLSQSLHH 259
            + + +   H  +LV+ +   LS  L  
Sbjct: 152 AMRKGAKLWHAAMLVHTDLDMLSAVLKV 179
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241 Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269 Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 100.0
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 100.0
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 100.0
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 100.0
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 100.0
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 98.9
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 91.5
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 87.91
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: LplA-like protein SP1160, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=1.2e-43  Score=312.62  Aligned_cols=162  Identities=34%  Similarity=0.552  Sum_probs=144.0

Q ss_pred             eEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecC
Q psy2667          53 KSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDS  132 (261)
Q Consensus        53 ~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~  132 (261)
                      +|+|.+++.||++|||+||+|+++...+ .|+||||+++|+|+||++|+++.|+|+++|++.||+||||+|||||||||+
T Consensus         1 ~~~i~~~s~d~~~nmA~de~Ll~~~~~~-~~~l~~~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~tGGgaV~h~~   79 (241)
T d1vqza2           1 MKYIINHSNDTAFNIALEEYAFKHLLDE-DQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDL   79 (241)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHHCTTC-SEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEECT
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhcCCCC-CCEEEEEcCCCEEEECCCCChhhhhCHHHHHHCCCeEEEEcCCCceEEECC
Confidence            4788899999999999999999998754 699999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEecCCCCC---ccchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhcccee
Q psy2667         133 GNLNVTFFTPRERYN---RRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQ  209 (261)
Q Consensus       133 G~ln~Sli~p~~~~~---~~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~  209 (261)
                      |+++||+++|.+...   ...+.+.++++| +.                                           +|++
T Consensus        80 g~~~~s~i~~~~~~~~~~~~~~~~~i~~al-~~-------------------------------------------~g~~  115 (241)
T d1vqza2          80 NNLNYTIISKEDENKAFDFKSFSTPVINTL-AQ-------------------------------------------LGVK  115 (241)
T ss_dssp             TEEEEEEEEECCTTCCCSHHHHHHHHHHHH-HH-------------------------------------------TTCC
T ss_pred             CCeEEEEEecCccchHHHHHHHHHHHHHHH-HH-------------------------------------------hccc
Confidence            999999999987632   223344555555 44                                           4555


Q ss_pred             EEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCCC
Q psy2667         210 TEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH  260 (261)
Q Consensus       210 a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~~  260 (261)
                      +++.+++|+.++|| ||+|+||++.++++||||||++++|++.|.++|+++
T Consensus       116 a~~~~~~d~~v~g~-Ki~G~aq~~~~~~~l~hgsll~~~d~~~~~~~l~~~  165 (241)
T d1vqza2         116 AEFTGRNDLEIDGK-KFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVS  165 (241)
T ss_dssp             EEEETTTEEEETTE-EEEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCCC
T ss_pred             eEEeccCCEEECCE-EEeeEEEEEeCCeEEEEEEEEecCCHHHHHHHhCCC
Confidence            78889999999999 999999999999999999999999999999999864
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure