Psyllid ID: psy2728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MATSLAPEHRPHPQEYHHPKQEYHPKQEYPKPLIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccEEEEEEccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccEEEEEEEcccccEEEEEEccccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
matslapehrphpqeyhhpkqeyhpkqeypkpligydrsatpaDVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFvskispldsktgflsyktTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV
Flexible Loop (DISEMBL)
matslapehrphpqeyhhpkqeyhPKQEYPKPLIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV
Low Complexity Region (SEG)
MATSLAPEHRPHPQEYHHPKQEYHPKQEYPKPLIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV
Disordered region (IsUnstruct)
********************************LIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKV**
Disordered Region (DISOPRED)
************************PKQEYPKPLIGYDRSATPADVYRL*********************LMYGMLFSLKSFVS**********FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV
Disordered Region (DISEMBL)
***********************HPKQEYPKPLIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV
Disordered Region (DISPRO)
**************EYHHPKQEYHPKQEYPKPLIGYDRSATPADVYRLILG********SALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATSLAPEHRPHPQEYHHPKQEYHPKQEYPKPLIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q2KMM2	145	Trafficking protein parti	yes	N/A	0.525	0.503	0.616	4e-20
Q5NCF2	145	Trafficking protein parti	yes	N/A	0.525	0.503	0.616	4e-20
Q9Y5R8	145	Trafficking protein parti	yes	N/A	0.525	0.503	0.602	7e-20
Q17QI1	145	Trafficking protein parti	yes	N/A	0.525	0.503	0.602	7e-20
Q557G3	142	Trafficking protein parti	yes	N/A	0.525	0.514	0.453	6e-13
Q03630	159	Trafficking protein parti	yes	N/A	0.525	0.459	0.424	4e-09
Q9UT70	155	Transport protein particl	yes	N/A	0.496	0.445	0.394	5e-09

>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 58/73 (79%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E KLMYGMLFS++SFVSK+SPLD K GFLS++T++Y LH YETPTG+K V+NTD+    +
Sbjct: 34  EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query: 127 RKFLASVYSKVYV 139
           R  L  +YS +YV
Sbjct: 94  RDVLHHIYSALYV 106

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Rattus norvegicus (taxid: 10116)

>sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 58/73 (79%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E KLMYGMLFS++SFVSK+SPLD K GFLS++T++Y LH YETPTG+K V+NTD+    +
Sbjct: 34  EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query: 127 RKFLASVYSKVYV 139
           R  L  +YS +YV
Sbjct: 94  RDVLHHIYSALYV 106

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E KLMYGMLFS++SFVSK+SPLD K GFL+++T++Y LH YETPTG+K V+NTD+    +
Sbjct: 34  EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query: 127 RKFLASVYSKVYV 139
           R  L  +YS +YV
Sbjct: 94  RDVLHHIYSALYV 106

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E KLMYGMLFS++SFVSK+SPLD K GFL+++T++Y LH YETPTG+K V+NTD+    +
Sbjct: 34  EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query: 127 RKFLASVYSKVYV 139
           R  L  +YS +YV
Sbjct: 94  RDVLHHIYSALYV 106

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 67  EGKLMYGMLFSLKSFVSKISP--LDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ 124
           + KL++GML+SLK+F++  SP  +D KTGF  YKT+ Y LH YET + +KF++ +D    
Sbjct: 32  DQKLLFGMLYSLKAFITSSSPKKIDDKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVP 91

Query: 125 DVRKFLASVYSKVYV 139
           D+R  L  +YS+++V
Sbjct: 92  DLRDDLKKIYSQIFV 106

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q03630|BET5_YEAST Trafficking protein particle complex subunit BET5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET5 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           + KL+YGM+FSL+S   K+S    K    S  T KY +H Y T +GL FVL +D + Q  
Sbjct: 40  DAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSY 99

Query: 127 RKFLASVYSKVYV 139
            + L  +YS +YV
Sbjct: 100 TQVLQYIYSHIYV 112

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation. Required for sporulation. Has a role late in meiosis following DNA replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 69  KLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRK 128
           KL++G++FSL++ V KI+    +  F+SY T+KY LH YETPT L+ +  T+ +   +  
Sbjct: 47  KLIFGVVFSLRNMVKKITA--DQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTH 104

Query: 129 FLASVYSKVYV 139
            L  +Y+ +YV
Sbjct: 105 VLQQIYTTLYV 115

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
389609801	145	conserved hypothetical protein [Papilio	0.611	0.586	0.647	6e-24
91094761	145	PREDICTED: similar to trafficking protei	0.582	0.558	0.679	2e-23
156537027	145	PREDICTED: trafficking protein particle	0.525	0.503	0.712	3e-23
114052112	146	trafficking protein particle complex 1 [	0.611	0.582	0.635	4e-23
357603310	145	trafficking protein particle complex 1 [	0.611	0.586	0.611	1e-22
156370309	141	predicted protein [Nematostella vectensi	0.525	0.517	0.671	3e-22
312384027	697	hypothetical protein AND_02678 [Anophele	0.582	0.116	0.617	4e-22
332376354	145	unknown [Dendroctonus ponderosae]	0.705	0.675	0.538	2e-21
242011886	145	trafficking protein particle complex sub	0.582	0.558	0.617	2e-21
332017490	145	Trafficking protein particle complex sub	0.525	0.503	0.684	3e-21

>gi|389609801|dbj|BAM18512.1| conserved hypothetical protein [Papilio xuthus]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 65/85 (76%)

Query: 55  DHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLK 114
           +   QS +    EGKLMYGMLFS+KSFVSKISPLD K GFL+YKT+KY LH  ETP+GLK
Sbjct: 22  NRSKQSGMSREEEGKLMYGMLFSIKSFVSKISPLDPKDGFLNYKTSKYTLHCLETPSGLK 81

Query: 115 FVLNTDVQAQDVRKFLASVYSKVYV 139
           FV+NTD QAQ VR  L  +Y ++YV
Sbjct: 82  FVMNTDNQAQGVRDLLKKIYGEIYV 106

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094761|ref|XP_966940.1| PREDICTED: similar to trafficking protein particle complex 1 [Tribolium castaneum] gi|270016552|gb|EFA12998.1| hypothetical protein TcasGA2_TC001478 [Tribolium castaneum]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 63/81 (77%)

Query: 59  QSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 118
           QS +    EGKLMYGMLFS+KSFV KISP D+K GFL YKT+KY LH  ETP+GLKFVLN
Sbjct: 26  QSGMTREEEGKLMYGMLFSIKSFVGKISPTDTKEGFLYYKTSKYTLHFLETPSGLKFVLN 85

Query: 119 TDVQAQDVRKFLASVYSKVYV 139
           TD  AQ VR+ L  +YS+VYV
Sbjct: 86  TDTNAQGVRELLQQIYSQVYV 106

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537027|ref|XP_001608308.1| PREDICTED: trafficking protein particle complex subunit 1-like [Nasonia vitripennis]

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 63/73 (86%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E KLMYGMLFS+KSFV+KISPLDSK GFL YKT+KY LH +ETP+GLKF+LNTD  AQ+V
Sbjct: 34  EAKLMYGMLFSIKSFVNKISPLDSKEGFLYYKTSKYTLHYFETPSGLKFILNTDNLAQNV 93

Query: 127 RKFLASVYSKVYV 139
           R+ L  +YS+VY+
Sbjct: 94  RELLQRLYSQVYI 106

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052112|ref|NP_001040218.1| trafficking protein particle complex 1 [Bombyx mori] gi|87248423|gb|ABD36264.1| trafficking protein particle complex 1 [Bombyx mori]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 65/85 (76%)

Query: 55  DHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLK 114
           +   QS + +  EGKLMYGMLFS+KSFVSKISPLD K GF  YKT+KY LH  ETP+GLK
Sbjct: 22  NRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLK 81

Query: 115 FVLNTDVQAQDVRKFLASVYSKVYV 139
           FV+NTD QAQ VR  L  +Y+++YV
Sbjct: 82  FVMNTDNQAQGVRDLLKKIYAEIYV 106

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603310|gb|EHJ63709.1| trafficking protein particle complex 1 [Danaus plexippus]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 66/85 (77%)

Query: 55  DHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLK 114
           +   Q+ +    EGKLMYGMLFS+KSFV+KISPLD K GFL+YKT+KY LH  ETP+GLK
Sbjct: 22  NRTKQAGMSREEEGKLMYGMLFSIKSFVAKISPLDPKDGFLNYKTSKYTLHYLETPSGLK 81

Query: 115 FVLNTDVQAQDVRKFLASVYSKVYV 139
           FV+NTD Q Q VR+ L  +Y+++YV
Sbjct: 82  FVMNTDNQVQGVRELLKKIYAEIYV 106

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156370309|ref|XP_001628413.1| predicted protein [Nematostella vectensis] gi|156215389|gb|EDO36350.1| predicted protein [Nematostella vectensis]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 62/73 (84%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E KLMYGML+S+KSFVS+ISP +SK GFLSYKT+KY LH YETPTGLK ++NTD+ A ++
Sbjct: 34  EFKLMYGMLYSIKSFVSRISPSESKQGFLSYKTSKYKLHFYETPTGLKLIMNTDIHANNI 93

Query: 127 RKFLASVYSKVYV 139
           R+ L  +YSK+YV
Sbjct: 94  RETLNDIYSKIYV 106

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|312384027|gb|EFR28859.1| hypothetical protein AND_02678 [Anopheles darlingi]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 63/81 (77%)

Query: 59  QSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 118
           QS +    E KLMYGMLFS+KSFVSKISP+D K GFL YKT KYALH  E P+G+KFVLN
Sbjct: 578 QSGITKDEEAKLMYGMLFSIKSFVSKISPIDPKEGFLYYKTNKYALHYLEVPSGVKFVLN 637

Query: 119 TDVQAQDVRKFLASVYSKVYV 139
           TD  +  +R+FL ++Y+K++V
Sbjct: 638 TDNTSTGIREFLQNIYTKIWV 658

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376354|gb|AEE63317.1| unknown [Dendroctonus ponderosae]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 68/104 (65%), Gaps = 6/104 (5%)

Query: 36  YDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFL 95
           +DR  T      L+  Q  +    S +    E KLMYGMLFSLKSFV+KISP D K GFL
Sbjct: 9   FDRMGT------LLYYQDWNRLKNSGMTKEEEAKLMYGMLFSLKSFVNKISPTDPKEGFL 62

Query: 96  SYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV 139
            YKT+KY LH  ETP+GLKFVLNTD  +Q VR FL  +Y +++V
Sbjct: 63  YYKTSKYTLHFLETPSGLKFVLNTDNHSQGVRDFLQQIYKEIFV 106

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011886|ref|XP_002426674.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis] gi|212510845|gb|EEB13936.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 64/81 (79%)

Query: 59  QSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 118
           QS +    EGKLMYGMLFSLK+FV++ISP+D K GFL YKT+KY L+ +ETPTGLKFVLN
Sbjct: 26  QSGMTREEEGKLMYGMLFSLKTFVTRISPMDVKEGFLYYKTSKYVLNYFETPTGLKFVLN 85

Query: 119 TDVQAQDVRKFLASVYSKVYV 139
           TD+ + + R  L  +YS++YV
Sbjct: 86  TDIVSPNNRDILQQIYSQIYV 106

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017490|gb|EGI58211.1| Trafficking protein particle complex subunit 1 [Acromyrmex echinatior]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 60/73 (82%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E KLMYGMLFS+KSFVSKISPLD K GFL YKT+KY LH +ETP+GLKFVLNTD  +Q+ 
Sbjct: 34  EAKLMYGMLFSIKSFVSKISPLDPKEGFLYYKTSKYTLHYFETPSGLKFVLNTDNASQNA 93

Query: 127 RKFLASVYSKVYV 139
           R+ L  +Y +VY+
Sbjct: 94  RELLQQLYREVYL 106

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
MGI|MGI:1098727	145	Trappc1 "trafficking protein p	0.525	0.503	0.616	1.3e-23
RGD|1311365	145	Trappc1 "trafficking protein p	0.525	0.503	0.616	1.3e-23
UNIPROTKB|Q2KMM2	145	Trappc1 "Trafficking protein p	0.525	0.503	0.616	1.3e-23
UNIPROTKB|Q17QI1	145	TRAPPC1 "Trafficking protein p	0.525	0.503	0.602	2.6e-23
UNIPROTKB|E2RTE6	145	TRAPPC1 "Uncharacterized prote	0.525	0.503	0.602	2.6e-23
UNIPROTKB|Q9Y5R8	145	TRAPPC1 "Trafficking protein p	0.525	0.503	0.602	2.6e-23
UNIPROTKB|F2Z5M0	145	TRAPPC1 "Uncharacterized prote	0.525	0.503	0.602	2.6e-23
FB|FBgn0260860	145	Bet5 [Drosophila melanogaster	0.525	0.503	0.671	3e-21
ZFIN|ZDB-GENE-040718-242	145	trappc1 "trafficking protein p	0.525	0.503	0.616	6.3e-21
UNIPROTKB|I3L3S0	95	TRAPPC1 "Trafficking protein p	0.438	0.642	0.639	8.4e-21

MGI|MGI:1098727 Trappc1 "trafficking protein particle complex 1" [Mus musculus (taxid:10090)]

 Score = 241 (89.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 45/73 (61%), Positives = 58/73 (79%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KLMYGMLFS++SFVSK+SPLD K GFLS++T++Y LH YETPTG+K V+NTD+    +
Sbjct:    34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query:   127 RKFLASVYSKVYV 139
             R  L  +YS +YV
Sbjct:    94 RDVLHHIYSALYV 106

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IDA

RGD|1311365 Trappc1 "trafficking protein particle complex 1" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 45/73 (61%), Positives = 58/73 (79%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KLMYGMLFS++SFVSK+SPLD K GFLS++T++Y LH YETPTG+K V+NTD+    +
Sbjct:    34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query:   127 RKFLASVYSKVYV 139
             R  L  +YS +YV
Sbjct:    94 RDVLHHIYSALYV 106

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA;ISO

UNIPROTKB|Q2KMM2 Trappc1 "Trafficking protein particle complex subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 45/73 (61%), Positives = 58/73 (79%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KLMYGMLFS++SFVSK+SPLD K GFLS++T++Y LH YETPTG+K V+NTD+    +
Sbjct:    34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query:   127 RKFLASVYSKVYV 139
             R  L  +YS +YV
Sbjct:    94 RDVLHHIYSALYV 106

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q17QI1 TRAPPC1 "Trafficking protein particle complex subunit 1" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KLMYGMLFS++SFVSK+SPLD K GFL+++T++Y LH YETPTG+K V+NTD+    +
Sbjct:    34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query:   127 RKFLASVYSKVYV 139
             R  L  +YS +YV
Sbjct:    94 RDVLHHIYSALYV 106

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RTE6 TRAPPC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KLMYGMLFS++SFVSK+SPLD K GFL+++T++Y LH YETPTG+K V+NTD+    +
Sbjct:    34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query:   127 RKFLASVYSKVYV 139
             R  L  +YS +YV
Sbjct:    94 RDVLHHIYSALYV 106

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9Y5R8 TRAPPC1 "Trafficking protein particle complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KLMYGMLFS++SFVSK+SPLD K GFL+++T++Y LH YETPTG+K V+NTD+    +
Sbjct:    34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query:   127 RKFLASVYSKVYV 139
             R  L  +YS +YV
Sbjct:    94 RDVLHHIYSALYV 106

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F2Z5M0 TRAPPC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 238 (88.8 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KLMYGMLFS++SFVSK+SPLD K GFL+++T++Y LH YETPTG+K V+NTD+    +
Sbjct:    34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query:   127 RKFLASVYSKVYV 139
             R  L  +YS +YV
Sbjct:    94 RDVLHHIYSALYV 106

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

FB|FBgn0260860 Bet5 [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 49/73 (67%), Positives = 58/73 (79%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KL YGMLFS+KSFVSKISP D K GFL YKT +YALH  ETP+GLKFVLNTD  A +V
Sbjct:    34 EAKLTYGMLFSIKSFVSKISPHDPKEGFLYYKTNRYALHYLETPSGLKFVLNTDTTAINV 93

Query:   127 RKFLASVYSKVYV 139
             ++ L  +Y+KV+V
Sbjct:    94 KELLQQLYAKVWV 106

GO:0030008 "TRAPP complex" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

ZFIN|ZDB-GENE-040718-242 trappc1 "trafficking protein particle complex 1" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KLMYGMLFS++SFVSK+SPLD K GFLS++T +Y LH YETPTG++ V+NTD+ A + 
Sbjct:    34 EFKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTNRYKLHYYETPTGIRLVMNTDLSAPNC 93

Query:   127 RKFLASVYSKVYV 139
             R+ L  +YS +YV
Sbjct:    94 RETLQQIYSTLYV 106

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|I3L3S0 TRAPPC1 "Trafficking protein particle complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
 Identities = 39/61 (63%), Positives = 51/61 (83%)

Query:    67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
             E KLMYGMLFS++SFVSK+SPLD K GFL+++T++Y LH YETPTG+K V+NTD+    +
Sbjct:    34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query:   127 R 127
             R
Sbjct:    94 R 94

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KMM2	TPPC1_RAT	No assigned EC number	0.6164	0.5251	0.5034	yes	N/A
Q9Y5R8	TPPC1_HUMAN	No assigned EC number	0.6027	0.5251	0.5034	yes	N/A
Q17QI1	TPPC1_BOVIN	No assigned EC number	0.6027	0.5251	0.5034	yes	N/A
Q5NCF2	TPPC1_MOUSE	No assigned EC number	0.6164	0.5251	0.5034	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
pfam04099	135	pfam04099, Sybindin, Sybindin-like family	2e-24
COG5122	134	COG5122, TRS23, Transport protein particle (TRAPP)	0.001

>gnl|CDD|146632 pfam04099, Sybindin, Sybindin-like family

 Score = 90.8 bits (226), Expect = 2e-24
 Identities = 31/73 (42%), Positives = 41/73 (56%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E KL+ GML SL +  SK+SPL   +G  S +T  + LH  +T TG+KFVL TD      
Sbjct: 32  EYKLLAGMLHSLHAISSKLSPLPGSSGIESLETDTFKLHCLQTLTGIKFVLVTDPGTGPN 91

Query: 127 RKFLASVYSKVYV 139
           R  L   Y ++Y 
Sbjct: 92  RDSLLRKYYELYS 104

Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Length = 135

>gnl|CDD|227451 COG5122, TRS23, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 14/66 (21%), Positives = 31/66 (46%)

Query: 70  LMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKF 129
           ++   L  + + +++  PL   +G L      + + +++T TG KFV   + +  +    
Sbjct: 35  ILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKRTVNALFQ 94

Query: 130 LASVYS 135
           L  +YS
Sbjct: 95  LQKIYS 100

Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG3368|consensus	140		100.0
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	100.0
KOG3369|consensus	199		99.94
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	99.88
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	97.69
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	95.96
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	92.42
PF08217	604	DUF1712: Fungal domain of unknown function (DUF171	91.23
KOG3444|consensus	121		86.6
KOG3487|consensus	139		83.16
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	82.4

>KOG3368|consensus

Probab=100.00  E-value=1.1e-34  Score=220.14  Aligned_cols=100  Identities=57%  Similarity=0.833  Sum_probs=96.3

Q ss_pred             ceeeeeee------eeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCc
Q psy2728          40 ATPADVYR------LILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL  113 (139)
Q Consensus        40 m~v~sl~I------LIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGl  113 (139)
                      |++|++||      |||++||++.++++..+++|+|||+||+|||++|++||+|.+.++||.+++|+.||||+||||||+
T Consensus         1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptgl   80 (140)
T KOG3368|consen    1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGL   80 (140)
T ss_pred             CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCc
Confidence            78999999      999999999988888899999999999999999999999999899999999999999999999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728         114 KFVLNTDVQAQDVRKFLASVYSKVYV  139 (139)
Q Consensus       114 KFVL~Td~~~~~l~~~L~~IY~elYv  139 (139)
                      ||||+||+++++++++|++||+.+||
T Consensus        81 k~vl~Tdpk~~~ir~vLq~IYs~lyV  106 (140)
T KOG3368|consen   81 KFVLNTDPKAGSIRDVLQYIYSHLYV  106 (140)
T ss_pred             EEEEecCCCcccHHHHHHHHHHHHHH
Confidence            99999999999999999999987986

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=100.00  E-value=3.2e-33  Score=212.16  Aligned_cols=101  Identities=41%  Similarity=0.589  Sum_probs=77.5

Q ss_pred             eEEecCCceeeeeeeeeecccCCCCCCC--ccCCcchhhhhHHhHHHHHHHHhhhCC------CCCCCCeEEEEeCCEEE
Q psy2728          33 LIGYDRSATPADVYRLILGQSVDHGSQS--ALMLMIEGKLMYGMLFSLKSFVSKISP------LDSKTGFLSYKTTKYAL  104 (139)
Q Consensus        33 ~~~~~~~m~v~sl~ILIy~re~~~~~~~--~~~~sne~klLaG~lhSL~ais~kLsP------~~~~~G~~s~eT~~ykL  104 (139)
                      |||+||++++      ||+|+|++.++.  +..++||+|+|||||||||+||+||+|      .++++||++++|++|||
T Consensus         4 lyI~nr~G~l------Iy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~ykl   77 (142)
T PF04099_consen    4 LYIFNRSGGL------IYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKL   77 (142)
T ss_dssp             EEEE-TTS-E------EEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EE
T ss_pred             EEEEeCCcce------eeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEE
Confidence            5666666665      999999975433  467999999999999999999999999      34568999999999999


Q ss_pred             EEeeCCCCcEEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728         105 HLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV  139 (139)
Q Consensus       105 h~~ET~TGlKFVL~Td~~~~~l~~~L~~IY~elYv  139 (139)
                      |||||+||+||||+||++++++.+.|.++|.++||
T Consensus        78 h~~eT~TGlKFvl~td~~~~~~~~~l~~~~~~lY~  112 (142)
T PF04099_consen   78 HCFETPTGLKFVLITDPNVPSLRDELLRIYYELYV  112 (142)
T ss_dssp             EEEE-TTS-EEEEEE-TTCCHCHHHHHHHHHHHHH
T ss_pred             EEEEcCcCcEEEEEecCCCccHHHHHHHHHHHHHH
Confidence            99999999999999999997776666666659985

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3369|consensus

Probab=99.94  E-value=9.4e-27  Score=184.37  Aligned_cols=78  Identities=24%  Similarity=0.438  Sum_probs=75.1

Q ss_pred             ccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728          61 ALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV  139 (139)
Q Consensus        61 ~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~~l~~~L~~IY~elYv  139 (139)
                      ++.+.||.+.|+|||||+++|+.|+||.++++|++.++|++|+||||||.||+|||+++|+.+..++.+||+|| ++|.
T Consensus        90 p~~ttNEkL~las~fhsl~aI~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~~~aD~lLrKiY-elYs  167 (199)
T KOG3369|consen   90 PKLTTNEKLILASSFHSLFAISTQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGTQGADSLLRKIY-ELYS  167 (199)
T ss_pred             CcccccchhhhhhhhcchhheeeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCchhHHHHHHHHH-HHHH
Confidence            44689999999999999999999999999999999999999999999999999999999999999999999999 9984

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=99.88  E-value=1.4e-22  Score=151.68  Aligned_cols=99  Identities=18%  Similarity=0.329  Sum_probs=91.9

Q ss_pred             ceEEecCCceeeeeeeeeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCC
Q psy2728          32 PLIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPT  111 (139)
Q Consensus        32 ~~~~~~~~m~v~sl~ILIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~T  111 (139)
                      .+.++|+++++      ||+|||.++  ...+++||+++|+|++||+++|+.|++|-.+++|++.+.+++|.++.|||.|
T Consensus         5 ~~~iINksGgl------ifqref~~~--et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~T   76 (134)
T COG5122           5 QFFIINKSGGL------IFQREFGEG--ETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTT   76 (134)
T ss_pred             EEEEEecCCcE------EEEEeccCC--ccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecC
Confidence            47888999998      999999764  5668999999999999999999999999988999999999999999999999


Q ss_pred             CcEEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728         112 GLKFVLNTDVQAQDVRKFLASVYSKVYV  139 (139)
Q Consensus       112 GlKFVL~Td~~~~~l~~~L~~IY~elYv  139 (139)
                      |+|||+++.....|+.--|++|| ++|+
T Consensus        77 G~kFV~~~~k~t~na~~ql~kiY-~lYs  103 (134)
T COG5122          77 GTKFVFVAEKRTVNALFQLQKIY-SLYS  103 (134)
T ss_pred             CcEEEEEecCCchhHHHHHHHHH-HHHH
Confidence            99999999988999888899999 8884

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=97.69  E-value=7.7e-05  Score=55.67  Aligned_cols=88  Identities=23%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             eecccCCCCCCCccC-CcchhhhhHHhHHHHHHHHhhhCCCCCCCCeE-EEEeCCEEEEEeeCCCCcEEEEEeC-----C
Q psy2728          49 ILGQSVDHGSQSALM-LMIEGKLMYGMLFSLKSFVSKISPLDSKTGFL-SYKTTKYALHLYETPTGLKFVLNTD-----V  121 (139)
Q Consensus        49 Iy~re~~~~~~~~~~-~sne~klLaG~lhSL~ais~kLsP~~~~~G~~-s~eT~~ykLh~~ET~TGlKFVL~Td-----~  121 (139)
                      ||-+++...+  ... +.++.+.-+-..-||=.|-.++.-.....-+. ....+.|+++-|.|.||+||||+.+     .
T Consensus         9 Ly~~~~~~~~--~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~~~~~~~   86 (132)
T PF04628_consen    9 LYIRSFPSEK--ESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHDMSDNSI   86 (132)
T ss_dssp             EEEEEE--ST---CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEECGGG-S-
T ss_pred             eEEEecCCCc--ccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEecccCCc
Confidence            7788886521  111 11233433333334666666666522222222 2456999999999999999999998     4


Q ss_pred             CchhHHHHHHHHhhhccC
Q psy2728         122 QAQDVRKFLASVYSKVYV  139 (139)
Q Consensus       122 ~~~~l~~~L~~IY~elYv  139 (139)
                      +..+++.++++|| ++|+
T Consensus        87 ~d~~ik~fF~~vh-~~Y~  103 (132)
T PF04628_consen   87 RDEDIKQFFKEVH-ELYV  103 (132)
T ss_dssp             -HHHHHHHHHHHH-HHHH
T ss_pred             chHHHHHHHHHHH-HHHH
Confidence            5778999999999 8884

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=95.96  E-value=0.013  Score=44.70  Aligned_cols=89  Identities=17%  Similarity=0.180  Sum_probs=56.0

Q ss_pred             eeecccCCCCCCCccCCcchhhhhH-HhHHHHHHHHhhhCCCCCCCCeEEEE-eCCEEEEEeeCCCCcEEEEEeCCC-ch
Q psy2728          48 LILGQSVDHGSQSALMLMIEGKLMY-GMLFSLKSFVSKISPLDSKTGFLSYK-TTKYALHLYETPTGLKFVLNTDVQ-AQ  124 (139)
Q Consensus        48 LIy~re~~~~~~~~~~~sne~klLa-G~lhSL~ais~kLsP~~~~~G~~s~e-T~~ykLh~~ET~TGlKFVL~Td~~-~~  124 (139)
                      .+|.++|..-  ..+.+.++.++|- =++|+--.|...+-=..+.+=|..++ -..-++.-|=+|+|+||+++..+. ..
T Consensus        14 pVYe~e~~~~--n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pSgmkf~~iH~n~s~~   91 (136)
T COG5603          14 PVYEREYDPI--NKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPSGMKFLFIHQNQSRK   91 (136)
T ss_pred             ceeeeeecCc--CcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccCCceEEEEeccchhh
Confidence            5999999731  2334455555552 23455444554443322222222222 134678889999999999998665 56


Q ss_pred             hHHHHHHHHhhhccC
Q psy2728         125 DVRKFLASVYSKVYV  139 (139)
Q Consensus       125 ~l~~~L~~IY~elYv  139 (139)
                      |++.++++++ ++|+
T Consensus        92 N~rsF~qevH-ely~  105 (136)
T COG5603          92 NARSFLQEVH-ELYA  105 (136)
T ss_pred             hHHHHHHHHH-HHHH
Confidence            8999999999 8885

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=92.42  E-value=0.78  Score=30.96  Aligned_cols=53  Identities=21%  Similarity=0.428  Sum_probs=40.2

Q ss_pred             HHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCchh--HHHHHHHHh
Q psy2728          79 KSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQD--VRKFLASVY  134 (139)
Q Consensus        79 ~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~~--l~~~L~~IY  134 (139)
                      +.|..||+|..  .+=.+++.+.|.+|++- -.|+=|+++||.+.+.  .=.+|++|.
T Consensus         3 ~~il~~i~~~~--~~k~s~~~~~~~fh~~~-~~~i~~~citd~~~~~r~aF~fL~~i~   57 (83)
T PF13774_consen    3 RKILKRIPPNG--NSKMSYESGNYVFHYLV-EDGIAYLCITDKSYPKRVAFAFLEEIK   57 (83)
T ss_dssp             HHHHHTS-TTS--ESEEEEEETTEEEEEEE-ETTEEEEEEEETTS-HHHHHHHHHHHH
T ss_pred             HHHHHhcCCCC--CCeEEEEECCEEEEEEE-cCCeEEEEEEcCCCCcchHHHHHHHHH
Confidence            56778888643  36889999999999999 9999999999998654  344555554

...

>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown

Probab=91.23  E-value=0.9  Score=42.22  Aligned_cols=73  Identities=26%  Similarity=0.299  Sum_probs=61.3

Q ss_pred             cCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeC-C----C----chhHHHHHHH
Q psy2728          62 LMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTD-V----Q----AQDVRKFLAS  132 (139)
Q Consensus        62 ~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td-~----~----~~~l~~~L~~  132 (139)
                      ..+.|+++...|+.-||-+|++..+|.+   .-+.++|++-++-++|---|+++++.-+ +    .    ...+..+|++
T Consensus        29 ~~~~neql~~IGL~qglv~Ft~~Fs~~~---~~~~I~T~K~r~v~~e~Ep~~Wi~l~I~~~~~~~~~~~~~~~L~~~L~~  105 (604)
T PF08217_consen   29 ETSLNEQLRQIGLAQGLVSFTRTFSPDD---PCDSIHTEKSRIVFYEPEPGFWIVLSINLPKEQSTKDGPEQYLLSVLKQ  105 (604)
T ss_pred             CCCHHHHHHHhhHHHHHHHHHHhcCCCC---cccceeecceEEEEEEecCCEEEEEEEecCcCCccccchHHHHHHHHHH
Confidence            3568999999999999999999999986   4677999999999999999999988655 1    1    1137999999


Q ss_pred             Hhhhcc
Q psy2728         133 VYSKVY  138 (139)
Q Consensus       133 IY~elY  138 (139)
                      .| ++|
T Consensus       106 ~Y-~~F  110 (604)
T PF08217_consen  106 AY-SMF  110 (604)
T ss_pred             HH-HHH
Confidence            99 766

>KOG3444|consensus

Probab=86.60  E-value=1.2  Score=33.67  Aligned_cols=57  Identities=30%  Similarity=0.380  Sum_probs=41.0

Q ss_pred             cchhhhhHHhHHHHHHHHhhhCC-CCCC----C---CeEEEEeCCEEEEEeeCCCCcEEEEEeCCC
Q psy2728          65 MIEGKLMYGMLFSLKSFVSKISP-LDSK----T---GFLSYKTTKYALHLYETPTGLKFVLNTDVQ  122 (139)
Q Consensus        65 sne~klLaG~lhSL~ais~kLsP-~~~~----~---G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~  122 (139)
                      +++-++=+-..-||--|-.+++- ..+.    +   |+ .+-|++||..=|-|-|-+||||..|..
T Consensus        24 e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGL-Ly~ted~kvYgfvtNTkVKFIlvvdss   88 (121)
T KOG3444|consen   24 EKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGL-LYPTEDYKVYGFVTNTKVKFILVVDSS   88 (121)
T ss_pred             HHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcc-cccccceeEEEEEeccEEEEEEEEcCC
Confidence            45555556666688888888853 3221    1   22 256999999999999999999998754

>KOG3487|consensus

Probab=83.16  E-value=2.4  Score=32.81  Aligned_cols=95  Identities=14%  Similarity=0.191  Sum_probs=57.8

Q ss_pred             eEEecCCceeeeeeeeeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCCCC------CCeEEEEeCCEEEEE
Q psy2728          33 LIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSK------TGFLSYKTTKYALHL  106 (139)
Q Consensus        33 ~~~~~~~m~v~sl~ILIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~------~G~~s~eT~~ykLh~  106 (139)
                      ++++++.+.-      ||-.+|..+.++..-+++...|=-=.+|+--.|+.++.=..+.      +-|.     ..-+.-
T Consensus         5 faIig~~d~P------vye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfn-----e~~VSA   73 (139)
T KOG3487|consen    5 FAIIGHCDNP------VYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFN-----ELFVSA   73 (139)
T ss_pred             EEEEecCCCc------eEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc-----ceeEEE
Confidence            3444555444      9999997432222223333333334556655666655432210      1122     233567


Q ss_pred             eeCCCCcEEEEEeCCCc-hhHHHHHHHHhhhccC
Q psy2728         107 YETPTGLKFVLNTDVQA-QDVRKFLASVYSKVYV  139 (139)
Q Consensus       107 ~ET~TGlKFVL~Td~~~-~~l~~~L~~IY~elYv  139 (139)
                      |-|++++||+++-...+ .++..+.+++| |+|+
T Consensus        74 yvTas~i~f~mlh~~~~~~~ik~Ffqev~-elyi  106 (139)
T KOG3487|consen   74 YVTASHIRFIMLHINRADDNIKLFFQEVH-ELYI  106 (139)
T ss_pred             EEccCcEEEEEEeeccccccHHHHHHHHH-HHHH
Confidence            89999999999988765 47899999999 9884

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=82.40  E-value=19  Score=31.76  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             ceEEecCCceeeeeeeeeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCC
Q psy2728          32 PLIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPT  111 (139)
Q Consensus        32 ~~~~~~~~m~v~sl~ILIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~T  111 (139)
                      -+.+....|+.      ||.|. .        +++.---+.|++.+|-++.+.   .  .+.++.+.++.-++.++. ..
T Consensus        13 h~fIlS~AGKP------Iysr~-G--------~e~~l~~~~g~~~aiiS~~~~---~--~d~l~~i~~~~~~ivfl~-r~   71 (415)
T PF03164_consen   13 HFFILSSAGKP------IYSRY-G--------DEDKLSSLMGVIQAIISFFQS---N--GDELRSIRAGDHRIVFLN-RG   71 (415)
T ss_pred             eEEEECCCCce------eEEec-C--------ChHHHHHHHHHHHHHHHHHHh---C--CCcEEEEEeCCEEEEEEe-cC
Confidence            56677777777      88876 2        133344455555555555532   2  257999999999998776 88


Q ss_pred             CcEEEEEeCCCch--hHHHHHHHHhhhc
Q psy2728         112 GLKFVLNTDVQAQ--DVRKFLASVYSKV  137 (139)
Q Consensus       112 GlKFVL~Td~~~~--~l~~~L~~IY~el  137 (139)
                      .+-+|.++..+.+  -++..|+-+|.+|
T Consensus        72 pl~lv~vS~~~e~~~~l~~qL~~ly~qi   99 (415)
T PF03164_consen   72 PLILVAVSKTGESESQLRKQLDYLYSQI   99 (415)
T ss_pred             CEEEEEEcCCcCCHHHHHHHHHHHHHHH
Confidence            9999999987644  5788888888655

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
2j3t_C	145	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		4e-21
3cue_C	159	Crystal Structure Of A Trapp Subassembly Activating		4e-10
2zmv_A	227	Crystal Structure Of Synbindin Length = 227		3e-04
2j3t_D	219	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		3e-04

>pdb|2J3T|C Chain C, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 145

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E KLMYGMLFS++SFVSK+SPLD K GFLS++T++Y LH YETPTG+K V+NTD+    +
Sbjct: 34  EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 127 RKFLASVYSKVYV 139
           R  L  +YS +YV
Sbjct: 94  RDVLHHIYSALYV 106

>pdb|3CUE|C Chain C, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 159

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           + KL+YGM+FSL+S   K+S    K    S  T KY +H Y T +GL FVL +D + Q  
Sbjct: 40  DAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSY 99
Query: 127 RKFLASVYSKVYV 139
            + L  +YS +YV
Sbjct: 100 TQVLQYIYSHIYV 112

>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin Length = 227

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 69  KLMYGMLF-SLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 127
           KLM   +F SL +  S++SP    +G    +T  + LH Y+T TG+KFV+  D +   + 
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 128 KFLASVY 134
             L  +Y
Sbjct: 168 SLLRKIY 174

>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 219

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 69  KLMYGMLF-SLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 127
           KLM   +F SL +  S++SP    +G    +T  + LH Y+T TG+KFV+  D +   + 
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 128 KFLASVY 134
             L  +Y
Sbjct: 168 SLLRKIY 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3cue_C	159	Transport protein particle 18 kDa subunit; membran	4e-25
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	3e-22
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	1e-15
3cue_A	219	Transport protein particle 23 kDa subunit; membran	1e-05

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 159

 Score = 92.7 bits (230), Expect = 4e-25
 Identities = 31/73 (42%), Positives = 43/73 (58%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           + KL+YGM+FSL+S   K+S    K    S  T KY +H Y T +GL FVL +D + Q  
Sbjct: 40  DAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSY 99

Query: 127 RKFLASVYSKVYV 139
            + L  +YS +YV
Sbjct: 100 TQVLQYIYSHIYV 112

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Length = 145

 Score = 84.9 bits (210), Expect = 3e-22
 Identities = 46/92 (50%), Positives = 62/92 (67%)

Query: 48  LILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLY 107
            +         Q+ +    E KLMYGMLFS++SFVSK+SPLD K GFLS++T++Y LH Y
Sbjct: 15  CLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYY 74

Query: 108 ETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV 139
           ETPTG+K V+NTD+    +R  L  +YS +YV
Sbjct: 75  ETPTGIKVVMNTDLGVGPIRDVLHHIYSALYV 106

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score = 69.4 bits (169), Expect = 1e-15
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 67  EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
           E  ++  M  SL +  S++SP    +G    +T  + LH Y+T TG+KFV+  D +   +
Sbjct: 107 EKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGI 166

Query: 127 RKFLASVYSKVYV 139
              L  +Y  +Y 
Sbjct: 167 DSLLRKIYE-IYS 178

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 219

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 14/69 (20%), Positives = 26/69 (37%)

Query: 70  LMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKF 129
                 F    F  +     +K+G     T ++ + +Y+T TGLKFV  +       +  
Sbjct: 95  NEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPT 154

Query: 130 LASVYSKVY 138
           +A+      
Sbjct: 155 IATTDKPDR 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	99.97
3cue_C	159	Transport protein particle 18 kDa subunit; membran	99.96
3cue_A	219	Transport protein particle 23 kDa subunit; membran	99.96
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	99.93
2j3w_A	142	Sedlin, trafficking protein particle complex prote	99.83
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	97.13
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	85.5
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	80.77

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=99.97  E-value=7.9e-31  Score=198.34  Aligned_cols=100  Identities=48%  Similarity=0.766  Sum_probs=89.4

Q ss_pred             ceeeeeee------eeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCc
Q psy2728          40 ATPADVYR------LILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL  113 (139)
Q Consensus        40 m~v~sl~I------LIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGl  113 (139)
                      |++|++||      |||+++|.+.++++...+||.++|+|++|||++|++||+|.++++||++++|++||+|||||+||+
T Consensus         1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI   80 (145)
T ss_dssp             -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred             CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence            67888888      899999986432232238999999999999999999999998889999999999999999999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728         114 KFVLNTDVQAQDVRKFLASVYSKVYV  139 (139)
Q Consensus       114 KFVL~Td~~~~~l~~~L~~IY~elYv  139 (139)
                      ||||+||+++++++++|++||+++||
T Consensus        81 KFvl~td~~~~~i~~~l~~iy~~lYv  106 (145)
T 2j3t_C           81 KVVMNTDLGVGPIRDVLHHIYSALYV  106 (145)
T ss_dssp             EEEEEECTTCCCCHHHHHHHHHTTHH
T ss_pred             EEEEEecCCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999988985

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.1e-30  Score=199.16  Aligned_cols=100  Identities=33%  Similarity=0.459  Sum_probs=86.8

Q ss_pred             ceeeeeee------eeecccCCCCC------CCccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEe
Q psy2728          40 ATPADVYR------LILGQSVDHGS------QSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLY  107 (139)
Q Consensus        40 m~v~sl~I------LIy~re~~~~~------~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~  107 (139)
                      |++|++||      |||+|+|.+.+      .....++||.++++|++|||++|++||+|.+..+||++++|++||||||
T Consensus         1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~   80 (159)
T 3cue_C            1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY   80 (159)
T ss_dssp             CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred             CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence            67788888      89999997521      1124568999999999999999999999998789999999999999999


Q ss_pred             eCCCCcEEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728         108 ETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV  139 (139)
Q Consensus       108 ET~TGlKFVL~Td~~~~~l~~~L~~IY~elYv  139 (139)
                      ||+||+||||+||+++.+++++|++||.++||
T Consensus        81 eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv  112 (159)
T 3cue_C           81 CTASGLWFVLLSDFKQQSYTQVLQYIYSHIYV  112 (159)
T ss_dssp             CCSSCCEEEEECCSSSSCTHHHHHHHHHHHHH
T ss_pred             EeCCCCEEEEEeCCCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999944985

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.2e-30  Score=206.45  Aligned_cols=97  Identities=24%  Similarity=0.360  Sum_probs=87.3

Q ss_pred             ceeeeeee------eeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCC------------------------
Q psy2728          40 ATPADVYR------LILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLD------------------------   89 (139)
Q Consensus        40 m~v~sl~I------LIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~------------------------   89 (139)
                      |+||+|||      |||+|+|+++  ..++++||+++|||||||||+|++||+|..                        
T Consensus         1 M~i~sl~IiNk~GglIY~r~~~~~--~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~   78 (219)
T 3cue_A            1 MAIETILVINKSGGLIYQRNFTND--EQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSN   78 (219)
T ss_dssp             -CEEEEEEECTTSCEEEEEECSSC--CCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC---
T ss_pred             CeeEEEEEEeCCCCEEeehhhccC--cCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccc
Confidence            67788888      8999999875  345789999999999999999999999965                        


Q ss_pred             ------------------------------------CCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCc----------
Q psy2728          90 ------------------------------------SKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQA----------  123 (139)
Q Consensus        90 ------------------------------------~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~----------  123 (139)
                                                          +++||+.++|++|++|||||+||+||||++|+..          
T Consensus        79 ~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~  158 (219)
T 3cue_A           79 RSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATT  158 (219)
T ss_dssp             -------------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC----------
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccc
Confidence                                                2459999999999999999999999999999998          


Q ss_pred             --------------hhHHHHHHHHhhhccC
Q psy2728         124 --------------QDVRKFLASVYSKVYV  139 (139)
Q Consensus       124 --------------~~l~~~L~~IY~elYv  139 (139)
                                    .+++++|++|| ++||
T Consensus       159 ~~~~~~~~~s~l~e~~ir~ff~~VY-elYv  187 (219)
T 3cue_A          159 DKPDRPKSTSNLAIQIADNFLRKVY-CLYS  187 (219)
T ss_dssp             ----------CHHHHHHHHHHHHHH-HHHH
T ss_pred             cccccccccccchHHHHHHHHHHHH-HHHH
Confidence                          78999999999 9996

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=99.93  E-value=1e-25  Score=181.79  Aligned_cols=75  Identities=29%  Similarity=0.501  Sum_probs=71.5

Q ss_pred             CcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728          64 LMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV  139 (139)
Q Consensus        64 ~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~~l~~~L~~IY~elYv  139 (139)
                      ++|+.++|+|++|||++|++||+|.++++||++++|+.||+|||||+||+||||+||++..+++.+|++|| ++|+
T Consensus       104 ~sn~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~Iy-elYv  178 (219)
T 2j3t_D          104 TSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIY-EIYS  178 (219)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHH-HHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHH-HHHH
Confidence            56688899999999999999999988788999999999999999999999999999999999999999999 8985

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=99.83  E-value=1.5e-20  Score=141.07  Aligned_cols=96  Identities=13%  Similarity=0.162  Sum_probs=80.3

Q ss_pred             Cce-eeeeee------eeecccCCCCCCCccCCcchhhhhH-HhHHHHHHHHhhhCCCCCCCC---eEEEEeCCEEEEEe
Q psy2728          39 SAT-PADVYR------LILGQSVDHGSQSALMLMIEGKLMY-GMLFSLKSFVSKISPLDSKTG---FLSYKTTKYALHLY  107 (139)
Q Consensus        39 ~m~-v~sl~I------LIy~re~~~~~~~~~~~sne~klLa-G~lhSL~ais~kLsP~~~~~G---~~s~eT~~ykLh~~  107 (139)
                      .|+ +++++|      |||.++|.+.+  .....++.++++ +++||++.++.+++|..  +|   .....++.|++|||
T Consensus         2 ~M~~i~~~~Ii~~~~~ply~~~~~~~~--~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~--~~~~l~~~~~~~~y~v~~~   77 (142)
T 2j3w_A            2 EMSGSFYFVIVGHHDNPVFEMEFLPPG--KAESKDDHRHLNQFIAHAALDLVDENMWLS--NNMYLKTVDKFNEWFVSAF   77 (142)
T ss_dssp             CCCCCEEEEEECTTSCEEEEEEECCSC--CGGGHHHHHHHHHHHHHHHHHHHHHHGGGC--SCSEEEEEEEETTEEEEEE
T ss_pred             ccceEEEEEEEeCCCCEEEEEecCCcC--cCCccHHHHHHHHHHHHHHHHHHHHhcCCC--CcceeEeeecccceEEEEE
Confidence            366 888888      89999998632  223455677888 99999999999999864  45   45666789999999


Q ss_pred             eCCCCcEEEEEeCC-CchhHHHHHHHHhhhccC
Q psy2728         108 ETPTGLKFVLNTDV-QAQDVRKFLASVYSKVYV  139 (139)
Q Consensus       108 ET~TGlKFVL~Td~-~~~~l~~~L~~IY~elYv  139 (139)
                      ||+||+||||++|+ +..+++.+|++|| ++|+
T Consensus        78 ~T~tg~Kfvl~~d~~~~~~i~~~~~~iy-~~Y~  109 (142)
T 2j3w_A           78 VTAGHMRFIMLHDVRQEDGIKNFFTDVY-DLYI  109 (142)
T ss_dssp             ECTTCCEEEEEESSCCHHHHHHHHHHHH-HHHH
T ss_pred             EcCCCcEEEEEeCCCCcHHHHHHHHHHH-HHHH
Confidence            99999999999999 5999999999999 8985

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00042  Score=53.49  Aligned_cols=94  Identities=20%  Similarity=0.202  Sum_probs=57.1

Q ss_pred             EecCCceeeeeeeeeecccCCCCCCCccCCcchhhhhHHhHHH-HHHHHhhhCCCCC---CCCeE-EEEeCCEEEEEee-
Q psy2728          35 GYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFS-LKSFVSKISPLDS---KTGFL-SYKTTKYALHLYE-  108 (139)
Q Consensus        35 ~~~~~m~v~sl~ILIy~re~~~~~~~~~~~sne~klLaG~lhS-L~ais~kLsP~~~---~~G~~-s~eT~~ykLh~~E-  108 (139)
                      +++++-..      ||=+.+...    ..+.|+.+-.-=++|+ |=-|-.+++-...   ..++. .+.++.++.+.|. 
T Consensus        15 IIg~~n~P------LyI~~~~~~----~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~i   84 (162)
T 3pr6_A           15 LIDESDKP------ILIYVPNEA----ENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLI   84 (162)
T ss_dssp             EECTTSCE------EEEECCC-----------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEEC
T ss_pred             EECCCCce------eEEEeCCCc----cccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEE
Confidence            45555555      455555431    1123444444444444 6667777642211   12333 5568999999999 


Q ss_pred             CCCCcEEEEEeCCC------c--hhHHHHHHHHhhhccC
Q psy2728         109 TPTGLKFVLNTDVQ------A--QDVRKFLASVYSKVYV  139 (139)
Q Consensus       109 T~TGlKFVL~Td~~------~--~~l~~~L~~IY~elYv  139 (139)
                      |.||+|||+..|.+      .  .+++.+++++| ++|+
T Consensus        85 Tnt~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh-~~Yv  122 (162)
T 3pr6_A           85 KQTGLKIVIGFEQKSLSGADDEFEAINQIFETVR-KIYI  122 (162)
T ss_dssp             TTTCCEEEEEEEGGGCCCCHHHHHHHHHHHHHHH-HHHH
T ss_pred             cCCceEEEEEEccCCcccccchHHHHHHHHHHHH-HHHH
Confidence            99999999988753      2  57888899999 8884

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=85.50  E-value=1.7  Score=31.63  Aligned_cols=45  Identities=24%  Similarity=0.239  Sum_probs=35.7

Q ss_pred             HHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCch
Q psy2728          76 FSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ  124 (139)
Q Consensus        76 hSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~  124 (139)
                      +--+.++.|+.|.    .=.+++.+.|.+|++-.-.|+=++++||.+-+
T Consensus        46 ~~ar~i~~r~~~~----~R~sv~~~~y~fH~~~~~~gl~~l~i~D~~yp   90 (144)
T 3bw6_A           46 FFAETVASRTGAG----QRQSIEEGNYIGHVYARSEGICGVLITDKEYP   90 (144)
T ss_dssp             HHHHHHHHHCCTT----EEEEEEETTEEEEEEECTTSEEEEEEEETTSC
T ss_pred             HHHHHHHhhCCCC----ceEEEEeCCEEEEEEEecCCEEEEEEECCCCC
Confidence            3456666666552    46789999999999977899999999998855

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=80.77  E-value=6.1  Score=30.39  Aligned_cols=57  Identities=23%  Similarity=0.251  Sum_probs=41.9

Q ss_pred             hHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCchh--HHHHHHHHh
Q psy2728          74 MLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQD--VRKFLASVY  134 (139)
Q Consensus        74 ~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~~--l~~~L~~IY  134 (139)
                      +-+.-+.++.++.|.    .=.+++.+.|.+|+|-...|+=++++||.+-+.  .-.+|.+|.
T Consensus        41 ~~f~~r~il~r~~~~----~r~s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~fL~ei~   99 (199)
T 3kyq_A           41 MTFTSQLIVERSAKG----SRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVL   99 (199)
T ss_dssp             HHHHHHHHHHTSCTT----EEEEEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCC----CeEEEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHHHHHHH
Confidence            445556788886663    357899999999998899999999999988653  233444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	1e-09

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (121), Expect = 1e-09
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 69  KLMYGMLFSLKSFVSKISPLDSKTGF-LSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 127
            L   +  +    V +   L +        K  ++ +  + T   ++F++  DV+ +D  
Sbjct: 36  HLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGI 95

Query: 128 KFLASVYSKVYV 139
           K   +    +Y+
Sbjct: 96  KNFFTDVYDLYI 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	99.71
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	88.1

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.3e-17  Score=123.71  Aligned_cols=99  Identities=15%  Similarity=0.234  Sum_probs=80.8

Q ss_pred             eEEecCCceeeeeeeeeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEE-EeCCEEEEEeeCCC
Q psy2728          33 LIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSY-KTTKYALHLYETPT  111 (139)
Q Consensus        33 ~~~~~~~m~v~sl~ILIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~-eT~~ykLh~~ET~T  111 (139)
                      |||+++....      ||.++|.... ....++++.++..+++||...|..+++|..+..++..+ ++++|++|||||+|
T Consensus         7 f~IIg~~~~p------LY~~ef~~~~-~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~t   79 (140)
T d2j3wa1           7 FVIVGHHDNP------VFEMEFLPPG-KAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAG   79 (140)
T ss_dssp             EEEECTTSCE------EEEEEECCSC-CGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTT
T ss_pred             EEEEcCCCCe------eEEEecCCcc-cccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCC
Confidence            5666666666      9999997521 11134566888888999999999999998877888886 68999999999999


Q ss_pred             CcEEEEEeCCCchh-HHHHHHHHhhhccC
Q psy2728         112 GLKFVLNTDVQAQD-VRKFLASVYSKVYV  139 (139)
Q Consensus       112 GlKFVL~Td~~~~~-l~~~L~~IY~elYv  139 (139)
                      |+||||+||+...+ ++.+++++| ++|+
T Consensus        80 g~Kfvl~td~~~~~~i~~~~~~v~-~lYv  107 (140)
T d2j3wa1          80 HMRFIMLHDVRQEDGIKNFFTDVY-DLYI  107 (140)
T ss_dssp             CCEEEEEESSCCHHHHHHHHHHHH-HHHH
T ss_pred             CcEEEEEeCCCcchHHHHHHHHHH-HHHH
Confidence            99999999997665 688889888 9985

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.10  E-value=1.7  Score=29.92  Aligned_cols=47  Identities=28%  Similarity=0.284  Sum_probs=39.0

Q ss_pred             hHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCch
Q psy2728          74 MLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ  124 (139)
Q Consensus        74 ~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~  124 (139)
                      |-+.-+.++.+..|..    -.+++.+.|.+|+|-.-.|+=+++++|.+-+
T Consensus        40 ~~f~sr~i~~Rt~~g~----r~sv~~~~y~~h~yv~~~gl~~l~i~d~~Yp   86 (140)
T d1ioua_          40 MTFFAETVASRTGAGE----RQSIEEGNYIGHVYARSEGICGVLITDKQYP   86 (140)
T ss_dssp             HHHHHHHHHHHCCSSS----EEEEEETTEEEEEECCSSSCEEEEEBCTTSC
T ss_pred             HHHHHHHHhhcCCCCc----eEEEEcCCeEEEEEEeeCCEEEEEEECCCcc
Confidence            4566777888876643    7889999999999988899999999998844