Psyllid ID: psy2736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSKM
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHcccccEEEEccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccEcccccccHcHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccEEcccEEEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEcccEcHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHccccccEEEccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
HGKSVDATQEILAVGVCNLascffqaypvsgsisrsavqsvsgvrtpmvgiytahgksvdaTQEILAVGVCNLascffqaypvsgsisrsavqsvsgvrtpmsrVGIEYllltpdrclifpsvdyVSNLvtkhsikqgipvvvdcshiygadFTAAKVIEVLCQNfsrrgqplfffnlkPSVVAVFEGVQPKDFVVYYDSRELDHLLRSKM
Flexible Loop (DISEMBL)
HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSKM
Low Complexity Region (SEG)
HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSKM
Disordered region (IsUnstruct)
********QEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSREL********
Disordered Region (DISOPRED)
*GKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSK*
Disordered Region (DISEMBL)
HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAVGVCNLASCFFQAYPVSGSI***********RTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSKM
Disordered Region (DISPRO)
**KSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q86WA9	606	Sodium-independent sulfat	yes	N/A	0.976	0.339	0.25	8e-11
Q9URY8	840	Probable sulfate permease	yes	N/A	0.492	0.123	0.330	1e-10
Q80ZD3	593	Sodium-independent sulfat	yes	N/A	0.976	0.347	0.233	1e-10
Q58DD2	602	Sodium-independent sulfat	yes	N/A	0.976	0.342	0.245	5e-10
O74377	877	Probable sulfate permease	no	N/A	0.218	0.052	0.586	3e-09
P23622	819	Sulfate permease 2 OS=Neu	N/A	N/A	0.601	0.155	0.316	6e-09
Q12325	893	Sulfate permease 2 OS=Sac	yes	N/A	0.218	0.051	0.5	1e-07
P38359	859	Sulfate permease 1 OS=Sac	no	N/A	0.218	0.053	0.5	2e-07
Q9EPH0	744	Prestin OS=Rattus norvegi	no	N/A	0.236	0.067	0.44	6e-06
Q99NH7	744	Prestin OS=Mus musculus G	no	N/A	0.236	0.067	0.44	6e-06

>sp|Q86WA9|S2611_HUMAN Sodium-independent sulfate anion transporter OS=Homo sapiens GN=SLC26A11 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 42/248 (16%)

Query: 5   VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA---------- 54
           +DA QE+LA+G+ N+      +YPV+GS  R+AV + SGV TP  G+ T           
Sbjct: 336 IDANQELLAIGLTNMLGSLVSSYPVTGSFGRTAVNAQSGVCTPAGGLVTGVLVLLSLDYL 395

Query: 55  ------HGKSVDATQEILAVG---------------------VC-NLASCFFQA-YPVSG 85
                   KS  A   I+AV                      +C     CF++  Y +  
Sbjct: 396 TSLFYYIPKSALAAVIIMAVAPLFDTKIFRTLWRVKRLDLLPLCVTFLLCFWEVQYGILA 455

Query: 86  SISRSAVQSVSGVRTPMSRVGI-EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP--VV 142
               S +  +     P ++V     L+L P   L FP+++ +   +   +++   P  +V
Sbjct: 456 GALVSLLMLLHSAARPETKVSEGPVLVLQPASGLSFPAMEALREEILSRALEVSPPRCLV 515

Query: 143 VDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRE 202
           ++C+H+   D+T    +  L Q+F ++G  L F  L+  V+ V      K F  +    E
Sbjct: 516 LECTHVCSIDYTVVLGLGELLQDFQKQGVALAFVGLQVPVLRVLLSADLKGFQYFSTLEE 575

Query: 203 LDHLLRSK 210
            +  LR +
Sbjct: 576 AEKHLRQE 583

Exhibits sodium-independent sulfate anion transporter activity that may cooperate with SLC26A2 to mediate DIDS-sensitive sulfate uptake into high endothelial venules endothelial cells (HEVEC).
Homo sapiens (taxid: 9606)

>sp|Q9URY8|SULH2_SCHPO Probable sulfate permease C869.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.05c PE=1 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 11/115 (9%)

Query: 9   QEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAV 68
           QE++A+GV NL   FF AYP +GS SRSA+++ +GV+TP+ GI+TA          ++ +
Sbjct: 408 QELIAMGVTNLIGIFFNAYPATGSFSRSAIKAKAGVKTPIAGIFTA---------AVVIL 458

Query: 69  GVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSV 123
            +  L   F+  Y  +  +S   + +V+ +  PM +  + + L   + C+ F SV
Sbjct: 459 SLYCLTDAFY--YIPNAILSAVIIHAVTDLILPMKQTILFWRLQPLEACIFFISV 511

High affinity uptake of sulfate into the cell.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q80ZD3|S2611_MOUSE Sodium-independent sulfate anion transporter OS=Mus musculus GN=Slc26a11 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 42/248 (16%)

Query: 5   VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH--------- 55
           +DA QE+LA+G+ N+      +YPV+GS  R+AV + +GV TP  G+ T           
Sbjct: 319 IDANQELLAIGLTNVLGSLVSSYPVTGSFGRTAVNAQTGVCTPAGGLVTGALVLLSLNYL 378

Query: 56  ----------------------------GKSVDATQ--EILAVGVCNLASCFFQAYPVSG 85
                                        +S+   Q  ++L + V  L S +   Y +  
Sbjct: 379 TSLFSYIPKSALAAVIITAVTPLFDVKIFRSLWRVQRLDLLPLCVTFLLSFWEIQYGILA 438

Query: 86  SISRSAVQSVSGVRTPMSRVGI-EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP--VV 142
               S +  +  V  P ++V   +  +L P   L FP++D +   +T  +++   P   V
Sbjct: 439 GSLVSLLILLHSVARPKTQVSEGQIFVLQPASGLYFPAIDALREAITNRALEASPPRSAV 498

Query: 143 VDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRE 202
           ++C+HI   D+T    +  L ++F ++G  L F  L+  V+        K F  +    E
Sbjct: 499 LECTHISSVDYTVIVGLGELLEDFQKKGVALAFVGLQVPVLRTLLAADLKGFRYFTTLEE 558

Query: 203 LDHLLRSK 210
            +  L+ +
Sbjct: 559 AEKFLQQE 566

Exhibits sodium-independent sulfate anion transporter activity that may cooperate with SLC26A2 to mediate DIDS-sensitive sulfate uptake into high endothelial venules endothelial cells (HEVEC).

Mus musculus (taxid: 10090)

>sp|Q58DD2|S2611_BOVIN Sodium-independent sulfate anion transporter OS=Bos taurus GN=SLC26A11 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 42/248 (16%)

Query: 5   VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH--------- 55
           +++ QE+LA+G  N+    F +YPV+GS  R+AV + SGV TP  G+ T           
Sbjct: 332 INSNQELLALGFTNILGSLFSSYPVTGSFGRTAVNAQSGVCTPAGGLMTGALVLLSLDYL 391

Query: 56  -------GKSVDATQEILAV---------------------GVC-NLASCFFQA-YPVSG 85
                   KS  A   I+AV                      +C     CF++  Y +  
Sbjct: 392 TSLFYYIPKSALAAVIIMAVVPLFDTKIVKTLWRVKRLDLLPLCVTFLLCFWEVQYGILA 451

Query: 86  SISRSAVQSVSGVRTPMSRVGI-EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP--VV 142
               S +  +  V  P  +V     L+L P   L FP+++ +   +   +++   P  V 
Sbjct: 452 GTLVSVLILLHSVARPKIQVSEGPMLVLQPASGLHFPAIETLREALLSRALETSPPRSVA 511

Query: 143 VDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRE 202
           +DC+HI   D+T    +  L ++F +RG  L    L+  V+ V      K  + +    E
Sbjct: 512 LDCTHICSIDYTVVLGLGELLEDFHKRGATLALIGLQVPVLRVLLSADLKGVLYFCTLEE 571

Query: 203 LDHLLRSK 210
            +  L+ +
Sbjct: 572 AEKYLKQE 579

Exhibits sodium-independent sulfate anion transporter activity that may cooperate with SLC26A2 to mediate DIDS-sensitive sulfate uptake into high endothelial venules endothelial cells (HEVEC).

Bos taurus (taxid: 9913)

>sp|O74377|SULH1_SCHPO Probable sulfate permease C3H7.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3H7.02 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 9   QEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
           QE++A+G  NL   FF AYP +GS SRSA+ + SGVRTP+ GI+TA
Sbjct: 422 QELIAMGATNLIGVFFHAYPATGSFSRSAINAKSGVRTPLGGIFTA 467

High affinity uptake of sulfate into the cell.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P23622|CYS14_NEUCR Sulfate permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cys-14 PE=2 SV=3

 Score = 60.8 bits (146), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 15/142 (10%)

Query: 5   VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQE 64
           ++ +QE++A+G  NL   F   YP +GS SR+A+++ +GVRTP+ GI+TA    +     
Sbjct: 362 INPSQELVAIGFTNLLGPFLGGYPATGSFSRTAIKAKAGVRTPLAGIFTAVLVLLALYA- 420

Query: 65  ILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVD 124
                   L S FF  Y  + +++   + +V  + TP   V  ++ L +P   +IF +  
Sbjct: 421 --------LTSVFF--YIPNSALAAMIIHAVGDLITPPREV-YKFWLTSPLEVVIFFAGV 469

Query: 125 YVSNLVTKHSIKQGIPVVVDCS 146
           +VS      SI+ GI V V  S
Sbjct: 470 FVSIFT---SIENGIYVTVAAS 488

Uptake of sulfate into the cell.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q12325|SUL2_YEAST Sulfate permease 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUL2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 9   QEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
           QE++A+GV NL   FF AYP +GS SRSA+++   VRTP+ G+++ 
Sbjct: 442 QELIAIGVSNLLGTFFNAYPATGSFSRSALKAKCNVRTPLSGLFSG 487

High affinity uptake of sulfate into the cell.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P38359|SUL1_YEAST Sulfate permease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUL1 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 33/46 (71%)

Query: 9   QEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
           QE++A+GV NL   FF +YP +GS SRSA+++   VRTP  G++T 
Sbjct: 426 QELIAIGVTNLIGTFFHSYPATGSFSRSALKAKCNVRTPFSGVFTG 471

High affinity uptake of sulfate into the cell.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9EPH0|S26A5_RAT Prestin OS=Rattus norvegicus GN=Slc26a5 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 1   HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVG 50
           HG  VD  QE++A+G+CN     FQ + +S S+SRS VQ  +G +T + G
Sbjct: 365 HGYQVDGNQELIALGICNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAG 414

Motor protein that converts auditory stimuli to length changes in outer hair cells and mediates sound amplification in the mammalian hearing organ. Prestin is a bidirectional voltage-to-force converter, it can operate at microsecond rates. It uses cytoplasmic anions as extrinsic voltage sensors, probably chloride and bicarbonate. After binding to a site with millimolar affinity, these anions are translocated across the membrane in response to changes in the transmembrane voltage. They move towards the extracellular surface following hyperpolarization, and towards the cytoplasmic side in response to depolarization. As a consequence, this translocation triggers conformational changes in the protein that ultimately alter its surface area in the plane of the plasma membrane. The area decreases when the anion is near the cytoplasmic face of the membrane (short state), and increases when the ion has crossed the membrane to the outer surface (long state). So, it acts as an incomplete transporter. It swings anions across the membrane, but does not allow these anions to dissociate and escape to the extracellular space. Salicylate, an inhibitor of outer hair cell motility, acts as competitive antagonist at the prestin anion-binding site.

Rattus norvegicus (taxid: 10116)

>sp|Q99NH7|S26A5_MOUSE Prestin OS=Mus musculus GN=Slc26a5 PE=2 SV=3

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 1   HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVG 50
           HG  VD  QE++A+G+CN     FQ + +S S+SRS VQ  +G +T + G
Sbjct: 365 HGYQVDGNQELIALGICNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAG 414

Motor protein that converts auditory stimuli to length changes in outer hair cells and mediates sound amplification in the mammalian hearing organ. Prestin is a bidirectional voltage-to-force converter, it can operate at microsecond rates. It uses cytoplasmic anions as extrinsic voltage sensors, probably chloride and bicarbonate. After binding to a site with millimolar affinity, these anions are translocated across the membrane in response to changes in the transmembrane voltage. They move towards the extracellular surface following hyperpolarization, and towards the cytoplasmic side in response to depolarization. As a consequence, this translocation triggers conformational changes in the protein that ultimately alter its surface area in the plane of the plasma membrane. The area decreases when the anion is near the cytoplasmic face of the membrane (short state), and increases when the ion has crossed the membrane to the outer surface (long state). So, it acts as an incomplete transporter. It swings anions across the membrane, but does not allow these anions to dissociate and escape to the extracellular space. Salicylate, an inhibitor of outer hair cell motility, acts as competitive antagonist at the prestin anion-binding site.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
328720685	642	PREDICTED: sodium-independent sulfate an	0.985	0.323	0.450	4e-54
195158383	624	GL13790 [Drosophila persimilis] gi|19411	0.928	0.314	0.425	2e-46
91089579	607	PREDICTED: similar to sulfate transporte	0.985	0.342	0.411	4e-44
91089581	642	PREDICTED: similar to AGAP002331-PA [Tri	0.511	0.168	0.75	1e-43
242009242	687	sulfate transporter, putative [Pediculus	0.516	0.158	0.724	1e-41
328697142	635	PREDICTED: sodium-independent sulfate an	0.597	0.198	0.625	1e-40
157108941	656	sulfate transporter [Aedes aegypti] gi|1	0.511	0.164	0.685	2e-40
328697092	657	PREDICTED: sodium-independent sulfate an	0.502	0.161	0.716	3e-40
347967643	655	AGAP002331-PA [Anopheles gambiae str. PE	0.469	0.151	0.695	1e-39
332027065	661	Sodium-independent sulfate anion transpo	0.497	0.158	0.712	2e-39

>gi|328720685|ref|XP_003247103.1| PREDICTED: sodium-independent sulfate anion transporter-like [Acyrthosiphon pisum]

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 115/255 (45%), Positives = 155/255 (60%), Gaps = 47/255 (18%)

Query: 1   HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA------ 54
           +GK+VDATQE+LA+G+CN+ + F Q++P SGS SRSAV + SGVRTP+ G+YT+      
Sbjct: 371 NGKTVDATQELLAIGLCNIGNSFVQSFPGSGSFSRSAVNNASGVRTPLGGLYTSILVIVA 430

Query: 55  -------------------------------HGKSV-DATQEILAVGVCNLASCFFQAYP 82
                                            K +  + +  L  G+    +C F    
Sbjct: 431 LLFLTPYFYYIPKTCLAAVIITAVVFMVEVRVVKPIYRSKKSDLIPGMFTFFACLFLPLE 490

Query: 83  VS---------GSISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKH 133
           +           SI   A +    ++   +R G +YL+LTPDRCL+FPS DYV NLVTKH
Sbjct: 491 IGVLFGIGLNLTSILYHAARPKISIQEYKTRAGFKYLMLTPDRCLVFPSADYVRNLVTKH 550

Query: 134 SIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKD 193
           S+K+ +PVV+DCSH+YGADFTAAKVIE+L ++FS RGQ LFF+NLKPSVV VF GV+PK+
Sbjct: 551 SLKRDMPVVIDCSHVYGADFTAAKVIEMLTKDFSDRGQALFFYNLKPSVVDVFRGVKPKE 610

Query: 194 FVVYYDSRELDHLLR 208
            V YY+ +ELD LL+
Sbjct: 611 LVFYYNKKELDRLLQ 625

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195158383|ref|XP_002020071.1| GL13790 [Drosophila persimilis] gi|194116840|gb|EDW38883.1| GL13790 [Drosophila persimilis]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 44/240 (18%)

Query: 1   HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVD 60
           +GKSVDA+QE++A+G  N+ + F Q +P +G++SR AV + SGVRTP+  IY+       
Sbjct: 389 NGKSVDASQELIAIGTANIFNSFVQGFPGTGALSRGAVNNASGVRTPLSNIYSG------ 442

Query: 61  ATQEILAVGVCNLASCFFQAY------PVSGSISRSAVQSVSGVRT--PMSRV------- 105
                   G+  +A  F   Y      P   +I  +AV  +  V+   PM R        
Sbjct: 443 --------GLVMIALLFLTPYFYFIPRPTLAAIIIAAVVFMIEVKVVKPMWRSKKSDLVP 494

Query: 106 ---------------GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYG 150
                          G++Y+++TPDRCLIFPSVDYV NLV K S++Q +PVV+D SH+YG
Sbjct: 495 GVGTFVACLLLSTQSGMDYMMITPDRCLIFPSVDYVRNLVNKQSMRQNVPVVIDASHVYG 554

Query: 151 ADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSK 210
           ADFT A VI+ L  +F++RGQ LFF+NLKPS+ A+FE V    FVVYY  ++LD LL+ +
Sbjct: 555 ADFTTATVIDSLISDFNQRGQLLFFYNLKPSICAIFEQVSAAQFVVYYQEQQLDELLKER 614

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089579|ref|XP_972239.1| PREDICTED: similar to sulfate transporter [Tribolium castaneum] gi|270011372|gb|EFA07820.1| hypothetical protein TcasGA2_TC005389 [Tribolium castaneum]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/255 (41%), Positives = 145/255 (56%), Gaps = 47/255 (18%)

Query: 1   HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIY-------- 52
           +G+ VDATQE+LA+G+CN+A+ F Q +P SG+++RSAV + SGV+T + G+Y        
Sbjct: 344 NGRPVDATQELLAIGLCNVANSFVQGFPGSGALARSAVNNSSGVKTTLGGLYTGVIVITA 403

Query: 53  ----TAHGKSV--------------------------DATQEILAVGVCNLASCFFQ--A 80
               T + + +                           A +  LA+ +    +C      
Sbjct: 404 LFFFTPYFQYIPKATLAAIIIAAAIFMVEIRVIQPMWRAKKSDLALALITFVTCLVTRLE 463

Query: 81  YPVSGS-------ISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKH 133
           Y +S         I   A +    + T  S  G +YLL+TPDRCLIFPS DYV NLV K 
Sbjct: 464 YGISTGVVLNIIFILYQAARPKITIETMKSTQGADYLLVTPDRCLIFPSADYVRNLVIKQ 523

Query: 134 SIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKD 193
           S++Q IPVV+DCSHIYGAD+TAA VIE L ++F  R QPLFF+NLK SV +VF G+    
Sbjct: 524 SMRQKIPVVIDCSHIYGADYTAATVIESLTKDFKTRQQPLFFYNLKSSVSSVFVGLNLDY 583

Query: 194 FVVYYDSRELDHLLR 208
           F+VYY+  ELD +L+
Sbjct: 584 FLVYYNEDELDDMLK 598

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089581|ref|XP_972290.1| PREDICTED: similar to AGAP002331-PA [Tribolium castaneum] gi|270011371|gb|EFA07819.1| hypothetical protein TcasGA2_TC005388 [Tribolium castaneum]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/108 (75%), Positives = 96/108 (88%)

Query: 103 SRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVL 162
           S  G+EYL+LTPDRCLIFPSVDYV NLVTKHSI+QGIPVV+DCSHIYGAD+TAA VIEVL
Sbjct: 525 SHEGVEYLMLTPDRCLIFPSVDYVRNLVTKHSIRQGIPVVIDCSHIYGADYTAATVIEVL 584

Query: 163 CQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSK 210
            Q+F+ R QPLFF+NLKPSV +VFEG+ PK+FVVYY+  ++D LLR+K
Sbjct: 585 TQDFAARDQPLFFYNLKPSVSSVFEGLSPKEFVVYYNREDIDELLRNK 632

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009242|ref|XP_002425399.1| sulfate transporter, putative [Pediculus humanus corporis] gi|212509208|gb|EEB12661.1| sulfate transporter, putative [Pediculus humanus corporis]

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/109 (72%), Positives = 95/109 (87%)

Query: 103 SRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVL 162
           ++ GIEYL LTPDRCLIFPSVDYV N+VTKHSIKQGIPVV+DCSHIYGADFTAAKVIE L
Sbjct: 573 TKSGIEYLRLTPDRCLIFPSVDYVRNIVTKHSIKQGIPVVIDCSHIYGADFTAAKVIESL 632

Query: 163 CQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSKM 211
            ++F +R QPL F+NLK SVV+VFEG+QP++FV +Y+  +LD LLR K+
Sbjct: 633 SRDFVQRKQPLLFYNLKASVVSVFEGLQPEEFVTFYEHDDLDELLRRKV 681

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697142|ref|XP_001949718.2| PREDICTED: sodium-independent sulfate anion transporter-like [Acyrthosiphon pisum]

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 101/128 (78%), Gaps = 2/128 (1%)

Query: 86  SISRSAVQSVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDC 145
           SI   A +    +R   +R GI YL++TPDRCLIFPSVDYV N++ KHS+KQ +PVV+DC
Sbjct: 500 SILYHAARPKLSIRVNTTRNGINYLMMTPDRCLIFPSVDYVRNIIIKHSLKQNLPVVIDC 559

Query: 146 SHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVV--YYDSREL 203
           SHIYGADFTAAKVIE+L  +FSRRGQ LFF+NLKPS+V VFEGV+PKDF +  +Y+S+++
Sbjct: 560 SHIYGADFTAAKVIELLTIDFSRRGQLLFFYNLKPSLVTVFEGVRPKDFNIRLFYESQDI 619

Query: 204 DHLLRSKM 211
           D LL   M
Sbjct: 620 DQLLNKHM 627

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108941|ref|XP_001650453.1| sulfate transporter [Aedes aegypti] gi|108879174|gb|EAT43399.1| AAEL005160-PA [Aedes aegypti]

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 91/108 (84%)

Query: 103 SRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVL 162
           S  G EYL++TPDRCLIFPSVDYV NLVTKHSI+Q +PVV+DCSH+YGAD+TAA VIE +
Sbjct: 539 SPAGTEYLIITPDRCLIFPSVDYVRNLVTKHSIRQSLPVVIDCSHVYGADYTAATVIESI 598

Query: 163 CQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSK 210
            Q+F++R QPLFF+NLKPSV AVFEG+ P DF+VYY   +LD L++ K
Sbjct: 599 TQDFAKRDQPLFFYNLKPSVCAVFEGLSPVDFIVYYREEDLDELMKEK 646

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697092|ref|XP_003240228.1| PREDICTED: sodium-independent sulfate anion transporter-like [Acyrthosiphon pisum]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 91/106 (85%)

Query: 103 SRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVL 162
           +R GI YL++TPDRCL+FPSVDYV NLV K S+K+ +PVV+DCSHIYGADFTAAKVIE+L
Sbjct: 537 TRDGINYLMVTPDRCLVFPSVDYVRNLVMKQSLKRELPVVIDCSHIYGADFTAAKVIEML 596

Query: 163 CQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLR 208
            Q+FS+RGQ LFF+NLKPSVVAVFEGVQPK F+ YY   +LD L +
Sbjct: 597 TQDFSKRGQALFFYNLKPSVVAVFEGVQPKGFITYYHRHDLDQLFQ 642

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967643|ref|XP_312638.5| AGAP002331-PA [Anopheles gambiae str. PEST] gi|333468365|gb|EAA07491.5| AGAP002331-PA [Anopheles gambiae str. PEST]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/105 (69%), Positives = 88/105 (83%)

Query: 106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQN 165
           G EYL++TPDRCLIFPSVDYV NLVTK SI+Q +PVV+DCSH+YGADFTAA VI+ + Q+
Sbjct: 541 GAEYLIITPDRCLIFPSVDYVRNLVTKQSIRQSLPVVIDCSHVYGADFTAATVIDSITQD 600

Query: 166 FSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSK 210
           F+RR QPLFF+NLKPSV A+FEG+ P DFVVYY    LD LL+ +
Sbjct: 601 FARRDQPLFFYNLKPSVCAIFEGLSPADFVVYYREEHLDDLLKQR 645

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027065|gb|EGI67161.1| Sodium-independent sulfate anion transporter [Acromyrmex echinatior]

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/108 (71%), Positives = 92/108 (85%), Gaps = 3/108 (2%)

Query: 106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ---GIPVVVDCSHIYGADFTAAKVIEVL 162
           G+EYL+LTPDRCLIFPSVDYV NLVTK+S +      PVV+DCSHIYGADFTAA VIE+L
Sbjct: 547 GVEYLMLTPDRCLIFPSVDYVRNLVTKYSRRAESVATPVVIDCSHIYGADFTAATVIEIL 606

Query: 163 CQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSK 210
            ++F++RGQPLFF+NLKPSV AVFEGV+PKDF+VYY+   LD LL+ K
Sbjct: 607 TKDFAKRGQPLFFYNLKPSVNAVFEGVEPKDFIVYYNQETLDDLLKEK 654

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
FB|FBgn0013953	654	Esp "Epidermal stripes and pat	0.497	0.160	0.609	2.9e-46
FB|FBgn0039789	638	CG9717 [Drosophila melanogaste	0.530	0.175	0.530	1.2e-39
FB|FBgn0039787	676	CG9702 [Drosophila melanogaste	0.483	0.150	0.543	1e-35
FB|FBgn0036240	612	CG6928 [Drosophila melanogaste	0.654	0.225	0.308	9.2e-17
UNIPROTKB|F1RZ81	599	LOC100737294 "Uncharacterized	0.232	0.081	0.510	6e-15
UNIPROTKB|F1LUG7	363	Slc26a11 "Protein Slc26a11" [R	0.232	0.134	0.448	4.4e-13
RGD|1306178	365	Slc26a11 "solute carrier famil	0.232	0.134	0.448	4.5e-13
FB|FBgn0038337	642	CG6125 [Drosophila melanogaste	0.236	0.077	0.58	1.3e-12
UNIPROTKB|Q86WA9	606	SLC26A11 "Sodium-independent s	0.232	0.080	0.469	2.5e-12
UNIPROTKB|J9P6I2	611	SLC26A11 "Uncharacterized prot	0.232	0.080	0.489	2.6e-12

FB|FBgn0013953 Esp "Epidermal stripes and patches" [Drosophila melanogaster (taxid:7227)]

 Score = 361 (132.1 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 64/105 (60%), Positives = 83/105 (79%)

Query:   106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQN 165
             G+EY ++TPDRCLIFPSVDYV NLV K SI+Q +PVV+D SH+YGADFT A VI+ L  +
Sbjct:   540 GVEYSMITPDRCLIFPSVDYVRNLVNKQSIRQNVPVVIDASHVYGADFTTATVIDSLISD 599

Query:   166 FSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSK 210
             F++RGQ LFF+NLKPS+ ++FE V    FVVYY  ++LD LL+ +
Sbjct:   600 FNQRGQLLFFYNLKPSICSIFEHVSAAQFVVYYQEQQLDELLKER 644

GO:0008271 "secondary active sulfate transmembrane transporter activity" evidence=ISS;NAS

GO:0008272 "sulfate transport" evidence=IEA;NAS

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0039789 CG9717 [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 60/113 (53%), Positives = 78/113 (69%)

Query:    98 VRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAK 157
             + T  +  G++YL+LTPDRCLIFPS+++V  ++ K   K  +PVV+DC+HIYGADFTAAK
Sbjct:   523 IETLATTTGLKYLMLTPDRCLIFPSMEFVRKVINKQGQKSTLPVVIDCTHIYGADFTAAK 582

Query:   158 VIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSK 210
             VI  +  +F  R QPLFF+NL+P V  VFEG+  KD VV YD   L   L  K
Sbjct:   583 VISTMVMDFKLREQPLFFYNLQPRVAQVFEGLN-KDLVVIYDINTLHAKLAEK 634

GO:0015381 "high affinity sulfate transmembrane transporter activity" evidence=ISS

GO:0008272 "sulfate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0039787 CG9702 [Drosophila melanogaster (taxid:7227)]

 Score = 290 (107.1 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
 Identities = 56/103 (54%), Positives = 76/103 (73%)

Query:   106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQN 165
             GI ++ +TPDRCLIFPSV++V N+V K   K  +PVV+DC++IY ADFTAAKVI  +  +
Sbjct:   538 GIRFVKITPDRCLIFPSVEFVRNMVLKLGSKSTLPVVIDCTYIYAADFTAAKVISSIVDD 597

Query:   166 FSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLR 208
             F RR Q + FFNLKPSVV+VFEG+  +  V+ Y++  L+  LR
Sbjct:   598 FRRRQQKIIFFNLKPSVVSVFEGLNTR-LVLCYNTHALNQELR 639

GO:0015381 "high affinity sulfate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0008272 "sulfate transport" evidence=IEA

GO:0005215 "transporter activity" evidence=NAS

FB|FBgn0036240 CG6928 [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
 Identities = 45/146 (30%), Positives = 76/146 (52%)

Query:    66 LAVGVCNLASCFFQAYPVSGSISRSA--VQSVSGVRTPMSRVGIEYLLLTPDRC-LIFPS 122
             LAVGV  +      +  V+  + R+A  V SVS ++T     GI Y+L+ P    L FP+
Sbjct:   431 LAVGV-EIGLLLGVSTDVAFLVYRAARPVLSVSKLQTTN---GINYILIRPKHSSLYFPA 486

Query:   123 VDYVSNLVTKHSIKQGI-PVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181
             V++V + ++K     G  PVV+DC+H++  DFTAA+ +  L +  ++   PLF  +   +
Sbjct:   487 VEWVRSGISKALTIHGTAPVVLDCAHVHEFDFTAARGMGSLQKELAKANAPLFLMSADKT 546

Query:   182 VVAVFEGVQPKDFVVYYDSRELDHLL 207
             +  + +     DF       +L+ LL
Sbjct:   547 IGVILKESTNIDFPTIDCPDDLEFLL 572

GO:0015381 "high affinity sulfate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0008272 "sulfate transport" evidence=IEA

GO:0005215 "transporter activity" evidence=NAS

UNIPROTKB|F1RZ81 LOC100737294 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 129 (50.5 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
 Identities = 25/49 (51%), Positives = 34/49 (69%)

Query:     5 VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYT 53
             VDA QE+LA+G+ N+    F +YPV+GS  R+AV + SGV TP  G+ T
Sbjct:   329 VDANQELLAIGLTNILGSLFSSYPVTGSFGRTAVNAQSGVCTPAGGLMT 377

GO:0016021 "integral to membrane" evidence=IEA

GO:0008272 "sulfate transport" evidence=IEA

GO:0008271 "secondary active sulfate transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1LUG7 Slc26a11 "Protein Slc26a11" [Rattus norvegicus (taxid:10116)]

 Score = 117 (46.2 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query:     5 VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYT 53
             +DA QE+LA+G+ N+      +YPV+GS  R+AV + +GV TP  G+ T
Sbjct:    93 IDANQELLAIGLTNVLGSLVSSYPVTGSFGRTAVNAQTGVCTPAGGLVT 141

GO:0008272 "sulfate transport" evidence=IEA

GO:0015116 "sulfate transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1306178 Slc26a11 "solute carrier family 26, member 11" [Rattus norvegicus (taxid:10116)]

 Score = 117 (46.2 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query:     5 VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYT 53
             +DA QE+LA+G+ N+      +YPV+GS  R+AV + +GV TP  G+ T
Sbjct:    91 IDANQELLAIGLTNVLGSLVSSYPVTGSFGRTAVNAQTGVCTPAGGLVT 139

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0008272 "sulfate transport" evidence=IEA;ISO

GO:0008509 "anion transmembrane transporter activity" evidence=ISO

GO:0015116 "sulfate transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;ISO

FB|FBgn0038337 CG6125 [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query:     4 SVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYT 53
             ++DA+QE+L +G+CN+A  FF A P  G+ +RSAV   SGVRTPM GIYT
Sbjct:   380 NLDASQEMLTLGLCNIAGSFFSAMPTCGAFTRSAVSQASGVRTPMAGIYT 429

GO:0015381 "high affinity sulfate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0008272 "sulfate transport" evidence=IEA

GO:0005215 "transporter activity" evidence=NAS

UNIPROTKB|Q86WA9 SLC26A11 "Sodium-independent sulfate anion transporter" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query:     5 VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYT 53
             +DA QE+LA+G+ N+      +YPV+GS  R+AV + SGV TP  G+ T
Sbjct:   336 IDANQELLAIGLTNMLGSLVSSYPVTGSFGRTAVNAQSGVCTPAGGLVT 384

GO:0008271 "secondary active sulfate transmembrane transporter activity" evidence=IEA

GO:0015301 "anion:anion antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0008272 "sulfate transport" evidence=IDA

GO:0008509 "anion transmembrane transporter activity" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IDA

UNIPROTKB|J9P6I2 SLC26A11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 121 (47.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query:     5 VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYT 53
             VDA QE+LA+G+ N+      +YPV+GS  R+AV + SGV TP  G+ T
Sbjct:   341 VDANQELLAIGLTNVLGSLVSSYPVTGSFGRTAVNAQSGVCTPAGGLVT 389

GO:0016021 "integral to membrane" evidence=IEA

GO:0008272 "sulfate transport" evidence=IEA

GO:0008271 "secondary active sulfate transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
cd07042	107	cd07042, STAS_SulP_like_sulfate_transporter, Sulph	3e-12
pfam00916	279	pfam00916, Sulfate_transp, Sulfate transporter fam	5e-12
pfam00916	279	pfam00916, Sulfate_transp, Sulfate transporter fam	2e-11
COG0659	554	COG0659, SUL1, Sulfate permease and related transp	2e-11
TIGR00815	563	TIGR00815, sulP, high affinity sulphate transporte	5e-11
COG0659	554	COG0659, SUL1, Sulfate permease and related transp	1e-10
TIGR00815	563	TIGR00815, sulP, high affinity sulphate transporte	1e-10
pfam01740	106	pfam01740, STAS, STAS domain	2e-04

>gnl|CDD|132913 cd07042, STAS_SulP_like_sulfate_transporter, Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 101 PMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP--VVVDCSHIYGADFTAAKV 158
           P++      L+   D  L F + +Y  + + +   +      V++D S +   D TAA+ 
Sbjct: 2   PLAEEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTAAEA 61

Query: 159 IEVLCQNFSRRGQPLFFFNLKPSVVAVFE 187
           +E L ++  +RG  L+   L P V  + E
Sbjct: 62  LEELVKDLRKRGVELYLAGLNPQVRELLE 90

The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. Length = 107

>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 1   HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
            G  +D+ +E++A G+ N+ S  F  YP +GS SRSAV   +G +T + GI  A
Sbjct: 174 KGYKIDSNKELVAQGIANIVSSLFGGYPATGSFSRSAVNVKAGAKTQLSGIVMA 227

Mutations in human SLC26A2 lead to several human diseases. Length = 279

>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 55  HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMS 103
            G  +D+ +E++A G+ N+ S  F  YP +GS SRSAV   +G +T +S
Sbjct: 174 KGYKIDSNKELVAQGIANIVSSLFGGYPATGSFSRSAVNVKAGAKTQLS 222

Mutations in human SLC26A2 lead to several human diseases. Length = 279

>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 24/54 (44%), Positives = 33/54 (61%)

Query: 1   HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
            G   D+ +E++A G+ N+AS  F   P +GSISRSA+   SG RT + GI  A
Sbjct: 276 TGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHA 329

Length = 554

>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 1   HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
            G  +DA QE++A G+ N+   FF  YP +GS+SR+AV + +G RT + G+ TA
Sbjct: 287 TGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSGVVTA 340

The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out) [Transport and binding proteins, Anions]. Length = 563

>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 55  HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMS 103
            G   D+ +E++A G+ N+AS  F   P +GSISRSA+   SG RT +S
Sbjct: 276 TGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLS 324

Length = 554

>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 55  HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRV 105
            G  +DA QE++A G+ N+   FF  YP +GS+SR+AV + +G RT +S V
Sbjct: 287 TGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSGV 337

The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out) [Transport and binding proteins, Anions]. Length = 563

>gnl|CDD|201948 pfam01740, STAS, STAS domain

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 118 LIFPSVDYVSNLVTKHSIKQGI-PVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176
           L F + +     + +   +  I  V++D S +   D +    +  L +   RRG  L   
Sbjct: 19  LDFANAEAFRERLLRALEEGEIRHVILDLSGVPFIDSSGLGALLELYKELRRRGVELVLV 78

Query: 177 NLKPSVVAVFE 187
              P V    E
Sbjct: 79  GPSPEVRRTLE 89

The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
TIGR00815	563	sulP high affinity sulphate transporter 1. (2) SO4	100.0
PRK11660	568	putative transporter; Provisional	100.0
COG0659	554	SUL1 Sulfate permease and related transporters (MF	100.0
KOG0236|consensus	665		100.0
PF00916	280	Sulfate_transp: Sulfate transporter family; InterP	99.82
TIGR02886	106	spore_II_AA anti-sigma F factor antagonist. The an	99.78
cd07041	109	STAS_RsbR_RsbS_like Sulphate Transporter and Anti-	99.77
PF01740	117	STAS: STAS domain; InterPro: IPR002645 The STAS (S	99.76
cd06844	100	STAS Sulphate Transporter and Anti-Sigma factor an	99.71
TIGR00377	108	ant_ant_sig anti-anti-sigma factor. This superfami	99.63
cd07042	107	STAS_SulP_like_sulfate_transporter Sulphate Transp	99.54
cd07043	99	STAS_anti-anti-sigma_factors Sulphate Transporter	99.53
COG1366	117	SpoIIAA Anti-anti-sigma regulatory factor (antagon	99.46
PF13466	80	STAS_2: STAS domain	99.36
TIGR03173	406	pbuX xanthine permease. All the seed members of th	98.66
TIGR00801	415	ncs2 uracil-xanthine permease. NCS2 family appears	98.46
COG3113	99	Predicted NTP binding protein (contains STAS domai	98.35
PRK10720	428	uracil transporter; Provisional	97.87
TIGR03616	429	RutG pyrimidine utilization transport protein G. T	97.51
PRK11412	433	putative uracil/xanthine transporter; Provisional	96.31
PF00860	389	Xan_ur_permease: Permease family; InterPro: IPR006	96.21
PF11964	109	SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 Th	95.68
PF14213	74	DUF4325: Domain of unknown function (DUF4325)	95.54
COG2233	451	UraA Xanthine/uracil permeases [Nucleotide transpo	94.11
TIGR00843	395	benE benzoate transporter. The benzoate transporte	94.04
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	92.18
TIGR00834	900	ae anion exchange protein. They preferentially cat	89.85
COG2252	436	Xanthine/uracil/vitamin C permease [Nucleotide tra	89.82
PF03594	378	BenE: Benzoate membrane transport protein; InterPr	89.48
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	83.12
PF09345	99	DUF1987: Domain of unknown function (DUF1987); Int	82.68
KOG1172|consensus	876		82.59
KOG3040|consensus	262		80.92
PF00955	510	HCO3_cotransp: HCO3- transporter family Only parti	80.09

>TIGR00815 sulP high affinity sulphate transporter 1

Probab=100.00  E-value=3.6e-42  Score=314.46  Aligned_cols=203  Identities=24%  Similarity=0.319  Sum_probs=181.7

Q ss_pred             CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736           1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE   64 (211)
Q Consensus         1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il   64 (211)
                      |||++|+||||+++|++|+++|||||+|++++++||++|.++|+|||++++++++                |+++||+++
T Consensus       287 ~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~il  366 (563)
T TIGR00815       287 TGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAII  366 (563)
T ss_pred             hCCCCCCcHHHHHhhHHHHHHHHhCccCCCCcchHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999997                999999999


Q ss_pred             HHHH----------------------HHHHHHHHHhcccccc---c-ee------eeecccceeecccCcc---------
Q psy2736          65 ILAV----------------------GVCNLASCFFQAYPVS---G-SI------SRSAVQSVSGVRTPMS---------  103 (211)
Q Consensus        65 i~~~----------------------~~~t~~~~~~~~~~~g---g-~~------~~~~~p~~~~~~~~~~---------  103 (211)
                      ++++                      |++|+++|+++|++.|   | ++      ||.+||+...+++.++         
T Consensus       367 i~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~  446 (563)
T TIGR00815       367 ISAVRGLIDYKELYKLWKADKMDFVVWLVTFFGVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQ  446 (563)
T ss_pred             HHHHhcccCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhh
Confidence            9998                      8899999999999999   4 22      9999999866654321         


Q ss_pred             ----ccCceEEEEccCcceecccHHHHHHHHHHHhh------hcC---CcEEEecCCCcccchHHHHHHHHHHHHHHhcC
Q psy2736         104 ----RVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSI------KQG---IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRG  170 (211)
Q Consensus       104 ----~~~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~------~~~---~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g  170 (211)
                          .+.+++.++|++|+|+|+|+++|++++.+..+      +++   +.+|+|+++++++|+||++.|.++.++++++|
T Consensus       447 ~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l~~~~~~~~~~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g  526 (563)
T TIGR00815       447 YPNARPPPGILVYRVDGPLYFANAEDLKDRLLKRIEDETRRELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARG  526 (563)
T ss_pred             CcccCCCCCEEEEEcCCceEeCcHHHHHHHHHHHHhhhccccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcC
Confidence                12346899999999999999999999988776      222   78999999999999999999999999999999


Q ss_pred             CcEEEEecChhHHHHHhhcCCCC----eEEecChHHH
Q psy2736         171 QPLFFFNLKPSVVAVFEGVQPKD----FVVYYDSREL  203 (211)
Q Consensus       171 ~~l~l~~~~~~v~~~l~~~g~~~----~~i~~~~~ea  203 (211)
                      ++++++++++++++.|++.|..+    .++|+|.+||
T Consensus       527 ~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~f~s~~~A  563 (563)
T TIGR00815       527 IQLLLANPNKAVRSTLKRGGLVELIGEEHFFPSVSDA  563 (563)
T ss_pred             CEEEEecCChHHHHHHHHCCchhhcCCcceeCChhhC
Confidence            99999999999999999999533    3799998885

(2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).

>PRK11660 putative transporter; Provisional

Probab=100.00  E-value=1.1e-41  Score=311.56  Aligned_cols=205  Identities=17%  Similarity=0.189  Sum_probs=181.1

Q ss_pred             CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736           1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE   64 (211)
Q Consensus         1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il   64 (211)
                      +++++|+||||+++|++|+++|||||+|++++++||++|.++|||||++++++++                |+++||+++
T Consensus       307 ~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~il  386 (568)
T PRK11660        307 TGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALL  386 (568)
T ss_pred             cCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999997                999999999


Q ss_pred             HHHH-----------------------HHHHHHHHHhcccccc---c-e--e----eeecccceeecccCc-cccCceEE
Q psy2736          65 ILAV-----------------------GVCNLASCFFQAYPVS---G-S--I----SRSAVQSVSGVRTPM-SRVGIEYL  110 (211)
Q Consensus        65 i~~~-----------------------~~~t~~~~~~~~~~~g---g-~--~----~~~~~p~~~~~~~~~-~~~~~~i~  110 (211)
                      ++++                       |++|++.++++|+..|   | .  +    +|.+++..  ....+ .++.+++.
T Consensus       387 i~~~~~m~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~--~~~~~~~~~~~~i~  464 (568)
T PRK11660        387 LMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMTR--LAPISVQDVPDDVL  464 (568)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc--ccccccccCCCcEE
Confidence            9998                       7788888999999999   4 2  2    66666543  11111 23345789


Q ss_pred             EEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcC
Q psy2736         111 LLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQ  190 (211)
Q Consensus       111 v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g  190 (211)
                      ++|++|+|||+|++++++++.+.. ++.+++|+|+++++++|+||+++|.++.+++++ |++++++++++++++.|+++|
T Consensus       465 iv~~~g~L~F~n~~~l~~~l~~~~-~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~~v~~~l~~~g  542 (568)
T PRK11660        465 VLRINGPLFFAAAERLFTELESRT-EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQFQPLRTLARAG  542 (568)
T ss_pred             EEEeCCeeeeeeHHHHHHHHHhhC-CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCChHHHHHHHHCC
Confidence            999999999999999999998865 335899999999999999999999999999999 999999999999999999999


Q ss_pred             CCC----eEEecChHHHHHHHhh
Q psy2736         191 PKD----FVVYYDSRELDHLLRS  209 (211)
Q Consensus       191 ~~~----~~i~~~~~ea~~~l~~  209 (211)
                      ..+    +++|+|.+||.+..++
T Consensus       543 l~~~~~~~~if~~~~~Al~~~~~  565 (568)
T PRK11660        543 IQPIPGRLAFYPTLREALADLLR  565 (568)
T ss_pred             ChhhcCcccccCCHHHHHHHHHh
Confidence            543    6899999999998765

>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-40  Score=302.08  Aligned_cols=208  Identities=24%  Similarity=0.283  Sum_probs=184.7

Q ss_pred             CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736           1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE   64 (211)
Q Consensus         1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il   64 (211)
                      ||+++|+||||+|||++|+++|||||+|++|+++||++|.++|||||+|++++++                |+|+||+++
T Consensus       276 ~~~~~d~nrELiaqGiaNi~sglfgg~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavl  355 (554)
T COG0659         276 TGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVL  355 (554)
T ss_pred             cCCCCCCCHHHHHhhHHHHHHHHhCCccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999997                999999999


Q ss_pred             HHHH-----------------------HHHHHHHHHhcccccc---c---ee----eeecccceeecccCcc--------
Q psy2736          65 ILAV-----------------------GVCNLASCFFQAYPVS---G---SI----SRSAVQSVSGVRTPMS--------  103 (211)
Q Consensus        65 i~~~-----------------------~~~t~~~~~~~~~~~g---g---~~----~~~~~p~~~~~~~~~~--------  103 (211)
                      ++++                       +++|++++++.|+..|   |   +.    +|.++|.....++.++        
T Consensus       356 i~v~~~l~~~~~~~~~~~~~~~~e~~v~~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~~~~~~  435 (554)
T COG0659         356 ILVGWGLLDWSLLKPLLRKLPRGELLVLLTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAGSDNAL  435 (554)
T ss_pred             HHHHHHhccHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCcccccccc
Confidence            9998                       7788889999999999   4   21    7888887644433221        


Q ss_pred             ----ccCceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy2736         104 ----RVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK  179 (211)
Q Consensus       104 ----~~~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~  179 (211)
                          ++.+++.+||++|++||+|++++++++.+..+++++.+++|+++++++|.|+.++|+++.++++++|+++.+++++
T Consensus       436 ~~~~~~~~~~~v~ri~gplfF~~~~~~~~~i~~~~~~~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~  515 (554)
T COG0659         436 KPLDEIGPGVLVYRLSGPLFFGNADRLERALLGLIEERPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLS  515 (554)
T ss_pred             cccccCCCCeEEEEecCceEEeeHHHHHHHHHHHHhccCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccc
Confidence                2345799999999999999999999999998765689999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhhcCCC----CeEEecChHHHHHHHh
Q psy2736         180 PSVVAVFEGVQPK----DFVVYYDSRELDHLLR  208 (211)
Q Consensus       180 ~~v~~~l~~~g~~----~~~i~~~~~ea~~~l~  208 (211)
                      .+.++.+++.+..    ..++|++.+++.+..+
T Consensus       516 ~~~~~~l~~~~~~~~i~~~~~f~~~~~a~~~~~  548 (554)
T COG0659         516 AQVLRLLRRAGLLYLVGAEHIFDSVDSALEKAR  548 (554)
T ss_pred             hhhHHHHHHhccccccccccccchhHHHHHHHH
Confidence            9999999999943    2368898888887644

>KOG0236|consensus

Probab=100.00  E-value=5.5e-38  Score=289.90  Aligned_cols=209  Identities=27%  Similarity=0.310  Sum_probs=182.6

Q ss_pred             CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736           1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE   64 (211)
Q Consensus         1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il   64 (211)
                      |+|++|+||||+|+|++|++||||+|+|.+|++|||++|.++|+|||++|+++++                |+|+||+|+
T Consensus       355 ~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~~~vl~~l~~l~p~f~~iP~~vLaaII  434 (665)
T KOG0236|consen  355 HGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSAALVLLALLFLGPLFYYIPKCVLAAII  434 (665)
T ss_pred             hCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999997                999999999


Q ss_pred             HHHH-----------------------HHHHHHHHHhcccccc---c-ee------eeecccceeecccCccc-------
Q psy2736          65 ILAV-----------------------GVCNLASCFFQAYPVS---G-SI------SRSAVQSVSGVRTPMSR-------  104 (211)
Q Consensus        65 i~~~-----------------------~~~t~~~~~~~~~~~g---g-~~------~~~~~p~~~~~~~~~~~-------  104 (211)
                      +.++                       |++||+++++++++.|   | ++      +|.+||+...+++++++       
T Consensus       435 i~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~ii~~~~~p~~~~l~~~~~t~~~~~~~  514 (665)
T KOG0236|consen  435 ISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFFIILRSQRPRISLLGRIPRTNIYRDIN  514 (665)
T ss_pred             HHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHHHHHHhcCcchhhhcccCCCccccchh
Confidence            9998                       9999999999999999   4 32      89999999777654321       


Q ss_pred             ------cCceEEEEccCcceecccHHHHHHHHH--HHhhhc--------------CCcEEEecCCCcccchHHHHHHHHH
Q psy2736         105 ------VGIEYLLLTPDRCLIFPSVDYVSNLVT--KHSIKQ--------------GIPVVVDCSHIYGADFTAAKVIEVL  162 (211)
Q Consensus       105 ------~~~~i~v~~~~g~L~F~n~~~~~~~l~--~~~~~~--------------~~~vIlD~s~v~~iD~t~l~~L~~~  162 (211)
                            +-+++.|+|++++++|.|.+.+++.+.  +...+.              .+.+|+||+.++++|++|+.+|+++
T Consensus       515 ~y~~~~~~~gi~i~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vild~s~v~~iD~~g~~~L~~l  594 (665)
T KOG0236|consen  515 QYRELKEIPGIKIFRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHENSIHSVILDCSGVSFIDTSGASALKSL  594 (665)
T ss_pred             hcchhhccCceEEEEeccceeeccHHHHHHHHHHHHhhhhcccccCcccccccCcceEEEEECCccchhhHHHHHHHHHH
Confidence                  123588999999999999999998772  333221              2579999999999999999999999


Q ss_pred             HHHHHhcCCcEEEEecChhHHHHHhhcCCC-C---eEEecChHHHHHHHhh
Q psy2736         163 CQNFSRRGQPLFFFNLKPSVVAVFEGVQPK-D---FVVYYDSRELDHLLRS  209 (211)
Q Consensus       163 ~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~-~---~~i~~~~~ea~~~l~~  209 (211)
                      .+++++++++++++|+++++++.|.+.+.- .   ..+|.+..|++...+.
T Consensus       595 ~~~~~~~~i~~~~~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~  645 (665)
T KOG0236|consen  595 FKDLKTRGVQVLLANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVS  645 (665)
T ss_pred             HHHHHhcCcEEEEeCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHH
Confidence            999999999999999999999999999742 2   3588888888876543

>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related

Probab=99.82  E-value=3.3e-21  Score=162.07  Aligned_cols=68  Identities=40%  Similarity=0.542  Sum_probs=66.4

Q ss_pred             CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736           1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE   64 (211)
Q Consensus         1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il   64 (211)
                      ++|++|+||||+++|++|+++|||||+|++++++||++|+++|||||+|++++++                |+|+|||++
T Consensus       175 ~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~~l~~iP~~~La~il  254 (280)
T PF00916_consen  175 TGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAPLLAYIPKAVLAAIL  254 (280)
T ss_pred             ccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999997                999999999


Q ss_pred             HHHH
Q psy2736          65 ILAV   68 (211)
Q Consensus        65 i~~~   68 (211)
                      ++++
T Consensus       255 i~~~  258 (280)
T PF00916_consen  255 IVVG  258 (280)
T ss_pred             HHHH
Confidence            9998

These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR02886 spore_II_AA anti-sigma F factor antagonist

Probab=99.78  E-value=2.2e-18  Score=124.67  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=89.6

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhh-cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIK-QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV  185 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~-~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~  185 (211)
                      +++.+++++|+|+|.|++.|++.+.+.+.+ +++.+++||+++++||+||+.+|..+.++++++|++++++++++++++.
T Consensus         7 ~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v~~~   86 (106)
T TIGR02886         7 GDVLIVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAVKRL   86 (106)
T ss_pred             CCEEEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            357899999999999999999999988753 3589999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCC-eEEecChHHH
Q psy2736         186 FEGVQPKD-FVVYYDSREL  203 (211)
Q Consensus       186 l~~~g~~~-~~i~~~~~ea  203 (211)
                      |+++|..+ +.+|++.+|+
T Consensus        87 l~~~gl~~~~~i~~~~~~a  105 (106)
T TIGR02886        87 FELSGLFKIIRIYESEEEA  105 (106)
T ss_pred             HHHhCCceEEEEcCChHHh
Confidence            99999655 5899999886

The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes

>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation

Probab=99.77  E-value=2.9e-18  Score=124.65  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=88.7

Q ss_pred             eEEEEccCcceecccHHHHHHHHHHHhh-hcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736         108 EYLLLTPDRCLIFPSVDYVSNLVTKHSI-KQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF  186 (211)
Q Consensus       108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~-~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l  186 (211)
                      ++.+++++|+|+|.++++|++++.+... +.++.+|+|+++|+++|+||+++|.+++++++.+|++++++++++++.+.|
T Consensus        10 ~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l   89 (109)
T cd07041          10 GVLVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTL   89 (109)
T ss_pred             CEEEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            4789999999999999999999877665 335799999999999999999999999999999999999999999999999


Q ss_pred             hhcCCC--CeEEecChHHHH
Q psy2736         187 EGVQPK--DFVVYYDSRELD  204 (211)
Q Consensus       187 ~~~g~~--~~~i~~~~~ea~  204 (211)
                      +++|..  .+++|+|.+||.
T Consensus        90 ~~~gl~~~~~~~~~t~~~Al  109 (109)
T cd07041          90 VELGIDLSGIRTAATLQQAL  109 (109)
T ss_pred             HHhCCChhhceeeccHHHhC
Confidence            999963  579999999873

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.

>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists

Probab=99.76  E-value=1.7e-18  Score=127.37  Aligned_cols=96  Identities=18%  Similarity=0.249  Sum_probs=90.2

Q ss_pred             eEEEEccCcceecccHHHHHHHHHHHhhhcC---------CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec
Q psy2736         108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQG---------IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL  178 (211)
Q Consensus       108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~---------~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~  178 (211)
                      ++.+++++|+|+|+|+++|++.+.+...+.+         +.+||||++|+++|++|+++|.++.++++++|++++|+++
T Consensus         9 ~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~   88 (117)
T PF01740_consen    9 GVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGL   88 (117)
T ss_dssp             TEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred             CEEEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence            5799999999999999999999999987764         7999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHhhcCC-CCe---EEecChHHH
Q psy2736         179 KPSVVAVFEGVQP-KDF---VVYYDSREL  203 (211)
Q Consensus       179 ~~~v~~~l~~~g~-~~~---~i~~~~~ea  203 (211)
                      ++.+++.|+++|. ..+   .+|+|.+||
T Consensus        89 ~~~v~~~l~~~~~~~~~~~~~~~~s~~~A  117 (117)
T PF01740_consen   89 NPDVRRILERSGLIDFIPEDQIFPSVDDA  117 (117)
T ss_dssp             HHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred             CHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence            9999999999995 346   899999987

It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....

>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors

Probab=99.71  E-value=5e-17  Score=116.54  Aligned_cols=87  Identities=15%  Similarity=0.142  Sum_probs=80.4

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV  185 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~  185 (211)
                      +++.+++++|+|+|+|+++|++.+.+...++ ++.+|+||+++++||+||+++|.+++++++++|++++++++++++++.
T Consensus         7 ~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~   86 (100)
T cd06844           7 DDYWVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISPAVRIT   86 (100)
T ss_pred             CCEEEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHH
Confidence            4588999999999999999999998776543 589999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCC
Q psy2736         186 FEGVQPKD  193 (211)
Q Consensus       186 l~~~g~~~  193 (211)
                      |+++|+.+
T Consensus        87 l~~~gl~~   94 (100)
T cd06844          87 LTESGLDK   94 (100)
T ss_pred             HHHhCchh
Confidence            99999644

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.

>TIGR00377 ant_ant_sig anti-anti-sigma factor

Probab=99.63  E-value=1.5e-15  Score=109.94  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=88.0

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhh-cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIK-QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV  185 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~-~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~  185 (211)
                      +++.+++++|+++|.|++.|++.+.+...+ +++.+++||+++.++|++|+..|.++.++++++|+++.++++++++.++
T Consensus        11 ~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~~~~~~~   90 (108)
T TIGR00377        11 EGVVIVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVSPRVARL   90 (108)
T ss_pred             CCEEEEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            357899999999999999999999988764 4588999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCC-CeEEecChHH
Q psy2736         186 FEGVQPK-DFVVYYDSRE  202 (211)
Q Consensus       186 l~~~g~~-~~~i~~~~~e  202 (211)
                      |+.+|.. .++++++.+|
T Consensus        91 l~~~~l~~~~~i~~~~~~  108 (108)
T TIGR00377        91 LDITGLLRIIPIYPTVEE  108 (108)
T ss_pred             HHHhChhheeccCCCCCC
Confidence            9999965 4689988764

This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.

>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function

Probab=99.54  E-value=5.2e-14  Score=101.10  Aligned_cols=87  Identities=24%  Similarity=0.309  Sum_probs=80.7

Q ss_pred             CceEEEEccCcceecccHHHHHHHHHHHhhhc--CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736         106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ--GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV  183 (211)
Q Consensus       106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~--~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~  183 (211)
                      +.++.+++++|+++|.|++.+++.+.+..+..  ++.+||||++++++|++|++.|.++.++++++|+++.++++++.+.
T Consensus         7 ~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~~l~~~~~~~~   86 (107)
T cd07042           7 PPGVLIYRIDGPLFFGNAEYFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYLAGLNPQVR   86 (107)
T ss_pred             CCCEEEEEecCceEeehHHHHHHHHHHHhccCCCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEEEEecCCHHHH
Confidence            45689999999999999999999999887654  3789999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCC
Q psy2736         184 AVFEGVQPK  192 (211)
Q Consensus       184 ~~l~~~g~~  192 (211)
                      +.|+.+|..
T Consensus        87 ~~l~~~g~~   95 (107)
T cd07042          87 ELLERAGLL   95 (107)
T ss_pred             HHHHHcCcH
Confidence            999999953

The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.

>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation

Probab=99.53  E-value=7.4e-14  Score=98.90  Aligned_cols=90  Identities=18%  Similarity=0.146  Sum_probs=82.4

Q ss_pred             eEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHh
Q psy2736         108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFE  187 (211)
Q Consensus       108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~  187 (211)
                      ++.+++++|+++|.+++.|.+.+.+..++.++.+++|++.++++|++|+..|.++.++++++|.++.+++++++++++|+
T Consensus         8 ~~~ii~l~G~l~~~~~~~~~~~~~~~~~~~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~   87 (99)
T cd07043           8 GVLVVRLSGELDAATAPELREALEELLAEGPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLE   87 (99)
T ss_pred             CEEEEEEeceecccchHHHHHHHHHHHHcCCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence            57899999999999999999999888765458999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCC-eEEe
Q psy2736         188 GVQPKD-FVVY  197 (211)
Q Consensus       188 ~~g~~~-~~i~  197 (211)
                      ++|+.+ +.++
T Consensus        88 ~~gl~~~~~i~   98 (99)
T cd07043          88 LTGLDRLFPIY   98 (99)
T ss_pred             HhCcceeeecc
Confidence            999654 4554

Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.

>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]

Probab=99.46  E-value=6.3e-13  Score=97.92  Aligned_cols=99  Identities=19%  Similarity=0.153  Sum_probs=87.3

Q ss_pred             EEEccCcceecccHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhh
Q psy2736         110 LLLTPDRCLIFPSVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEG  188 (211)
Q Consensus       110 ~v~~~~g~L~F~n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~  188 (211)
                      .++.+.|+|+..++..|++.+.+...+.. +.++||++.|+|+|++|++.|...++.++..|+++.+++++|++.+.++.
T Consensus        15 ~vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v~~~~~~   94 (117)
T COG1366          15 LVLPLIGELDAARAPALKETLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTLEL   94 (117)
T ss_pred             EEEEeeEEEchHHHHHHHHHHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence            68999999999999999999997765543 56999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-eEEecChHHHHHHHh
Q psy2736         189 VQPKD-FVVYYDSRELDHLLR  208 (211)
Q Consensus       189 ~g~~~-~~i~~~~~ea~~~l~  208 (211)
                      +|... +.++++.+++...+.
T Consensus        95 ~gl~~~~~~~~~~~~~~~~~~  115 (117)
T COG1366          95 TGLDKSFIITPTELEAALALL  115 (117)
T ss_pred             hCchhhcccccchHHHHHHhc
Confidence            99654 577776666665543

>PF13466 STAS_2: STAS domain

Probab=99.36  E-value=3.8e-12  Score=87.26  Aligned_cols=79  Identities=16%  Similarity=0.132  Sum_probs=74.4

Q ss_pred             EccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCC
Q psy2736         112 LTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQP  191 (211)
Q Consensus       112 ~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~  191 (211)
                      +++.|++++.+++.+++.+.+..+.+ +.++||+++|.++|++|++.|..+.+.++++|.++.+.++++.++++++.+|+
T Consensus         1 l~l~G~l~~~~~~~l~~~l~~~~~~~-~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~~~~~~ll~~~gl   79 (80)
T PF13466_consen    1 LRLSGELDIATAPELRQALQALLASG-RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPSPALRRLLELLGL   79 (80)
T ss_pred             CEEEEEEeHHHHHHHHHHHHHHHcCC-CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhCc
Confidence            46889999999999999999998653 79999999999999999999999999999999999999999999999999885

>TIGR03173 pbuX xanthine permease

Probab=98.66  E-value=2.6e-08  Score=88.26  Aligned_cols=60  Identities=17%  Similarity=0.277  Sum_probs=52.5

Q ss_pred             CcchHHHHHhHhHHHhhhcCCcccccchhh-hHHhhhcCCCccchhhhhhc------------------ccchhHHHHHH
Q psy2736           6 DATQEILAVGVCNLASCFFQAYPVSGSISR-SAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEIL   66 (211)
Q Consensus         6 d~nqEl~a~G~~N~~~~~~g~~p~~~s~sr-s~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili~   66 (211)
                      +.|||+.++|++|+++|+||++|.++ +++ ++++..+|++||++++++++                  |++++++++++
T Consensus       254 ~~~~~l~~~Gi~~i~aglfG~~p~t~-~~~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~  332 (406)
T TIGR03173       254 DLAGGLRADGLGSALGGLFNTFPYTS-FSQNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV  332 (406)
T ss_pred             hccchHHhccHHHHHHHHhCCCCCcc-hhhhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            35799999999999999999999886 555 56888899999999988886                  99999997775

All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.

>TIGR00801 ncs2 uracil-xanthine permease

Probab=98.46  E-value=1.3e-07  Score=84.07  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             cchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------------------ccchhHHHHHHHH
Q psy2736           7 ATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEILAV   68 (211)
Q Consensus         7 ~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili~~~   68 (211)
                      .|||+.+.|++|+++|+||++|.+++..++.++..+|.+||++.+++|+                  |.++++|++++..
T Consensus       271 ~~r~l~adGl~~i~aglfG~~p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~  350 (415)
T TIGR00801       271 LHRGVLADGLATLLAGLFGGFPNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMF  350 (415)
T ss_pred             ccchHHHhhHHHHHHHhcCCCCCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999997777776                  9999999888544

NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).

>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]

Probab=98.35  E-value=2.2e-06  Score=60.18  Aligned_cols=83  Identities=12%  Similarity=0.009  Sum_probs=71.6

Q ss_pred             EEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcC
Q psy2736         111 LLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQ  190 (211)
Q Consensus       111 v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g  190 (211)
                      -+.+.|+|+-.+...+=+.......+ ...+-+|+++|..+||+|+..|.++++.++++|..+.+.++++.++...+.++
T Consensus        13 tL~LsGeL~r~tl~~lw~~r~~~~~~-~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p~~L~tLa~Ly~   91 (99)
T COG3113          13 TLVLSGELDRDTLLPLWSQREAQLKQ-LDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVPEQLRTLAELYN   91 (99)
T ss_pred             eEEEeccccHHHHHHHHHHHHHHccc-cCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCcHHHHHHHHHhC
Confidence            46789999988887776666555432 25888999999999999999999999999999999999999999999999999


Q ss_pred             CCCe
Q psy2736         191 PKDF  194 (211)
Q Consensus       191 ~~~~  194 (211)
                      +.++
T Consensus        92 l~~~   95 (99)
T COG3113          92 LSDW   95 (99)
T ss_pred             cHhh
Confidence            7654

>PRK10720 uracil transporter; Provisional

Probab=97.87  E-value=1e-05  Score=72.34  Aligned_cols=61  Identities=16%  Similarity=0.133  Sum_probs=48.2

Q ss_pred             cCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhh----hhc------------------ccchhH
Q psy2736           4 SVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIY----TAH------------------GKSVDA   61 (211)
Q Consensus         4 ~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~----~~~------------------P~~~La   61 (211)
                      +.|.|||+.+.|++|+++|+||++|.++    ++-|...++.|++++-+    +++                  |.||++
T Consensus       259 ~~~~~r~l~adGlatii~glfG~~p~tt----y~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlg  334 (428)
T PRK10720        259 DPGLHRSMFANGLSTVISGFFGSTPNTT----YGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMG  334 (428)
T ss_pred             CccccchHhhhhHHHHHHHhcCCCCccc----cccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            4578999999999999999999999998    55566666666665543    332                  999999


Q ss_pred             HHHHHHH
Q psy2736          62 TQEILAV   68 (211)
Q Consensus        62 ~ili~~~   68 (211)
                      |+.++..
T Consensus       335 g~~i~~f  341 (428)
T PRK10720        335 GVSLLLY  341 (428)
T ss_pred             HHHHHHH
Confidence            9998654

>TIGR03616 RutG pyrimidine utilization transport protein G

Probab=97.51  E-value=5.6e-05  Score=67.60  Aligned_cols=63  Identities=16%  Similarity=0.114  Sum_probs=46.9

Q ss_pred             CCcCCc--chHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchh----hhhhc------------------cc
Q psy2736           2 GKSVDA--TQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVG----IYTAH------------------GK   57 (211)
Q Consensus         2 ~~~~d~--nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~----~~~~~------------------P~   57 (211)
                      +++.|+  +||+.+.|++|+++|+||+.|.+..    +-|...++.|++++    ...++                  |.
T Consensus       275 ~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~----~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~  350 (429)
T TIGR03616       275 GRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTY----AENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPV  350 (429)
T ss_pred             CCCCCchhccchhhhhHHHHHHHhcCCCCCcce----eeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            345565  8999999999999999999887644    56666666666663    22222                  99


Q ss_pred             chhHHHHHHHH
Q psy2736          58 SVDATQEILAV   68 (211)
Q Consensus        58 ~~La~ili~~~   68 (211)
                      |+++|++++..
T Consensus       351 pVlgG~~i~~f  361 (429)
T TIGR03616       351 AVLGGASIVVF  361 (429)
T ss_pred             HHHHHHHHHHH
Confidence            99999998554

This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).

>PRK11412 putative uracil/xanthine transporter; Provisional

Probab=96.31  E-value=0.0045  Score=55.50  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=56.7

Q ss_pred             CcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------------------ccchhHHHHHHH
Q psy2736           6 DATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEILA   67 (211)
Q Consensus         6 d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili~~   67 (211)
                      +.+|-+.+-|++++++|+||++|.+..-....+-..+|.++|+....+|+                  |.||++|+.++.
T Consensus       276 ~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~  355 (433)
T PRK11412        276 RYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVS  355 (433)
T ss_pred             ccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            56888999999999999999999998888889999999999999888876                  999999988775


Q ss_pred             H
Q psy2736          68 V   68 (211)
Q Consensus        68 ~   68 (211)
                      .
T Consensus       356 F  356 (433)
T PRK11412        356 Y  356 (433)
T ss_pred             H
Confidence            5

>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []

Probab=96.21  E-value=0.0055  Score=54.14  Aligned_cols=65  Identities=15%  Similarity=0.203  Sum_probs=50.3

Q ss_pred             cCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------------------ccchhHHHHH
Q psy2736           4 SVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEI   65 (211)
Q Consensus         4 ~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili   65 (211)
                      +.+.+|=+.+.|++++++|+||+.|.+....-...-...|.++|..++.+++                  |.++++|..+
T Consensus       266 ~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~l  345 (389)
T PF00860_consen  266 PPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLL  345 (389)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHH
T ss_pred             chhhcccceeeeeeeeechhhcCCCCccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchH
Confidence            5668899999999999999999999998888888888888999998887776                  9999888776


Q ss_pred             HHH
Q psy2736          66 LAV   68 (211)
Q Consensus        66 ~~~   68 (211)
                      +..
T Consensus       346 v~~  348 (389)
T PF00860_consen  346 VLF  348 (389)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.

>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised

Probab=95.68  E-value=0.014  Score=41.62  Aligned_cols=101  Identities=13%  Similarity=0.066  Sum_probs=68.1

Q ss_pred             EEEEccCcceecccHHHHHHHHHHHhhhcC-CcEEEecC-CCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh---hHH
Q psy2736         109 YLLLTPDRCLIFPSVDYVSNLVTKHSIKQG-IPVVVDCS-HIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP---SVV  183 (211)
Q Consensus       109 i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~-~~vIlD~s-~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~---~v~  183 (211)
                      +..++++|.+.-....++.+.+.+..++.+ -.+.+|++ .+..++..+.....++......+=.++.+++-++   .+.
T Consensus         2 il~v~~~g~~t~ed~~~~~~~~~~~~~~~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~AvV~~~~~~~~~~   81 (109)
T PF11964_consen    2 ILAVRVSGKLTEEDYKELLPALEELIADHGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAVVGDSEWIRMIA   81 (109)
T ss_dssp             -EEEEEEEEE-HHHHHHHHHHHHHHHTTSSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEEE-SSCCCHHHH
T ss_pred             EEEEEEeeeeCHHHHHHHHHHHHHHHhcCCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEEEECcHHHHHHH
Confidence            578899999999999999999999876544 57999999 8888887665555543322111113567776654   333


Q ss_pred             HHHhhcCCCCeEEe--cChHHHHHHHhh
Q psy2736         184 AVFEGVQPKDFVVY--YDSRELDHLLRS  209 (211)
Q Consensus       184 ~~l~~~g~~~~~i~--~~~~ea~~~l~~  209 (211)
                      +.+........++|  ++.+||.+-|++
T Consensus        82 ~~~~~~~~~~~~~F~~~~~~~A~~WL~e  109 (109)
T PF11964_consen   82 NFFAAFPPIEVRYFPPDEEEEALAWLRE  109 (109)
T ss_dssp             HHHHHH-SSEEEEE--SSHHHHHHHHC-
T ss_pred             HHHHhcCCCceEEECCCCHHHHHHHHcC
Confidence            44444434567999  999999998864

This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.

>PF14213 DUF4325: Domain of unknown function (DUF4325)

Probab=95.54  E-value=0.096  Score=35.05  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             cHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHH-HHHHHHHHHH--hcCCcEEEEecChhHHHHHhhc
Q psy2736         122 SVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAK-VIEVLCQNFS--RRGQPLFFFNLKPSVVAVFEGV  189 (211)
Q Consensus       122 n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~-~L~~~~~~~~--~~g~~l~l~~~~~~v~~~l~~~  189 (211)
                      +...+++.+.+.+++ .+.|+||++++..+-++-+. ++..+++++.  .-..++.+.++++.+.+++++.
T Consensus         2 ~G~~~~~~i~~~l~~-~~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~~v   71 (74)
T PF14213_consen    2 DGERLRDEIEPALKE-GEKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIKRV   71 (74)
T ss_pred             ChHHHHHHHHHHHhc-CCeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHHHH
Confidence            356778888887765 35699999999888888665 5555555543  2345799999999999988764

>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]

Probab=94.11  E-value=0.024  Score=50.82  Aligned_cols=64  Identities=19%  Similarity=0.206  Sum_probs=55.1

Q ss_pred             CCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------------------ccchhHHHHHH
Q psy2736           5 VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEIL   66 (211)
Q Consensus         5 ~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili~   66 (211)
                      -+..|-+++-|++.+++|+|+++|.+..=-...+-..+|.+||......|+                  |.+||+|+.++
T Consensus       280 ~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~iv  359 (451)
T COG2233         280 PRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLV  359 (451)
T ss_pred             cccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHH
Confidence            455777899999999999999999998888888888899999988877776                  99999988877


Q ss_pred             HH
Q psy2736          67 AV   68 (211)
Q Consensus        67 ~~   68 (211)
                      .-
T Consensus       360 mF  361 (451)
T COG2233         360 LF  361 (451)
T ss_pred             HH
Confidence            65

>TIGR00843 benE benzoate transporter

Probab=94.04  E-value=0.097  Score=46.34  Aligned_cols=55  Identities=15%  Similarity=0.119  Sum_probs=38.9

Q ss_pred             CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHH-----hhhcCCCccchhhhhhc
Q psy2736           1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAV-----QSVSGVRTPMVGIYTAH   55 (211)
Q Consensus         1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~-----n~~~G~~t~~s~~~~~~   55 (211)
                      +||+.+.++=+...|++|+++++|||++.+-+=--+++     ..+-++|.=.+++.+++
T Consensus       250 aGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaaitaAic~G~~ah~d~~rR~~a~i~~Gv  309 (395)
T TIGR00843       250 AGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAITAAICMGKDAHEDKDKRWIAAAAAGI  309 (395)
T ss_pred             cCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHhHHHhcCcccccCcCccchHHHHHHH
Confidence            58899999999999999999999999993222111222     22225666777777776

The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=92.18  E-value=0.25  Score=35.10  Aligned_cols=69  Identities=9%  Similarity=0.102  Sum_probs=55.3

Q ss_pred             EEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec-----ChhHHHHHhhcCCC--CeEEecChHHHHHHHhh
Q psy2736         141 VVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL-----KPSVVAVFEGVQPK--DFVVYYDSRELDHLLRS  209 (211)
Q Consensus       141 vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~g~~--~~~i~~~~~ea~~~l~~  209 (211)
                      +++|+.+|-+-+...+..=.++++.++++|.+++|..=     +++..+.|+..|+.  .-.++.+-..+.++|++
T Consensus         1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~   76 (101)
T PF13344_consen    1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKE   76 (101)
T ss_dssp             EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHH
T ss_pred             CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHh
Confidence            58999999999998888889999999999999888732     26788888999953  23677778888888876

...

>TIGR00834 ae anion exchange protein

Probab=89.85  E-value=0.4  Score=46.67  Aligned_cols=62  Identities=16%  Similarity=0.048  Sum_probs=49.8

Q ss_pred             cchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhc-----------------CC-Cccchhhhhhc-------------
Q psy2736           7 ATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVS-----------------GV-RTPMVGIYTAH-------------   55 (211)
Q Consensus         7 ~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~-----------------G~-~t~~s~~~~~~-------------   55 (211)
                      .+-+|+-+|+.|.++|+||--+.+|+..||..-.++                 +. .+|+++++.++             
T Consensus       692 yH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv~~~PvL~  771 (900)
T TIGR00834       692 FHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSILMEPILK  771 (900)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHHHHHHHHh
Confidence            355799999999999999999999998887654432                 22 27888887765             


Q ss_pred             --ccchhHHHHHHHH
Q psy2736          56 --GKSVDATQEILAV   68 (211)
Q Consensus        56 --P~~~La~ili~~~   68 (211)
                        |++||+|+-++-+
T Consensus       772 ~IP~aVL~GvFlYMG  786 (900)
T TIGR00834       772 RIPLAVLFGIFLYMG  786 (900)
T ss_pred             hccHHHHHHHHHHHH
Confidence              9999999998876

They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.

>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]

Probab=89.82  E-value=0.55  Score=42.05  Aligned_cols=63  Identities=21%  Similarity=0.213  Sum_probs=53.4

Q ss_pred             CCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc---------------ccchhHHHHHHHH
Q psy2736           5 VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH---------------GKSVDATQEILAV   68 (211)
Q Consensus         5 ~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~---------------P~~~La~ili~~~   68 (211)
                      -|.+|-|.+-+++-++|+++|.-|++ ++--|+.....|+||-++.++.++               |-.+-+..+++++
T Consensus       282 ~~~~~al~~D~v~t~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~lf~~Pl~~~vP~~AtapaLi~vG  359 (436)
T COG2252         282 PRIGKALLADSVATVVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLSLFFSPLAALVPGYATAPALIIVG  359 (436)
T ss_pred             cccchHHHHhHHHHHHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHH
Confidence            47889999999999999999999887 456688889999999999999997               7666666666665

>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]

Probab=89.48  E-value=0.97  Score=39.75  Aligned_cols=42  Identities=17%  Similarity=0.140  Sum_probs=35.9

Q ss_pred             CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhc
Q psy2736           1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVS   42 (211)
Q Consensus         1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~   42 (211)
                      +||+.+.|.=+..-|+++++.++|||++.+-+=--+++...-
T Consensus       234 ~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~  275 (378)
T PF03594_consen  234 AGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGP  275 (378)
T ss_pred             cCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCC
Confidence            689999999999999999999999999988666666665543

Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=83.12  E-value=7.5  Score=31.02  Aligned_cols=65  Identities=12%  Similarity=0.109  Sum_probs=48.2

Q ss_pred             EEEEccCccee---cccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE
Q psy2736         109 YLLLTPDRCLI---FPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF  174 (211)
Q Consensus       109 i~v~~~~g~L~---F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~  174 (211)
                      +.+++++|.+.   -....++.+.+.++..++ .+.|+|+... ...|....+.+.+.++.+++.+.+++
T Consensus         2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpvi   70 (208)
T cd07023           2 IAVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPVV   70 (208)
T ss_pred             EEEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence            56888999998   778889999998876543 3778887764 45677777777777777777666554

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised

Probab=82.68  E-value=6.7  Score=27.85  Aligned_cols=65  Identities=6%  Similarity=-0.025  Sum_probs=49.2

Q ss_pred             EEEccCcceecccHHHHHHHHHHHhh----hcCCcEEEecCCCcccchHHHHHHHHHHHHH---HhcCCcEEE
Q psy2736         110 LLLTPDRCLIFPSVDYVSNLVTKHSI----KQGIPVVVDCSHIYGADFTAAKVIEVLCQNF---SRRGQPLFF  175 (211)
Q Consensus       110 ~v~~~~g~L~F~n~~~~~~~l~~~~~----~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~---~~~g~~l~l  175 (211)
                      .++++.|.=+=-|+..|-+-+.+.++    ++.+.+.+++. +.|+++|..++|.++.+.+   .+.|.++.+
T Consensus        10 g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~~~~~~i~~~~~-L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v   81 (99)
T PF09345_consen   10 GRLEISGESYPENAFAFYQPILDWLEAYLAEPNKPITFNFK-LSYFNTSSSKALMDIFDLLEDAAQKGGKVTV   81 (99)
T ss_pred             CEEEEecccCccCHHHHHHHHHHHHHHHHhCCCCcEEEEEE-EEEEecHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence            47888998888888887776666654    33478999994 9999999999998887766   556666543

>KOG1172|consensus

Probab=82.59  E-value=1.7  Score=42.01  Aligned_cols=60  Identities=17%  Similarity=0.171  Sum_probs=47.7

Q ss_pred             hHHHHHhHhHHHhhhcCCcccccchhhhHHhhhc-----------------CCC-ccchhhhhhc---------------
Q psy2736           9 QEILAVGVCNLASCFFQAYPVSGSISRSAVQSVS-----------------GVR-TPMVGIYTAH---------------   55 (211)
Q Consensus         9 qEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~-----------------G~~-t~~s~~~~~~---------------   55 (211)
                      =+|+-+|+.|.+||+||=-+..|+..+|-.-.++                 |.| .|++|++.++               
T Consensus       670 ~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgls~~~~pvL~~I  749 (876)
T KOG1172|consen  670 LDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGLSVLLLPVLKLI  749 (876)
T ss_pred             HHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            4689999999999999999999999888655443                 232 5777777665               


Q ss_pred             ccchhHHHHHHHH
Q psy2736          56 GKSVDATQEILAV   68 (211)
Q Consensus        56 P~~~La~ili~~~   68 (211)
                      |+|||.|+-.+-+
T Consensus       750 P~~VL~GvFlYMg  762 (876)
T KOG1172|consen  750 PMPVLYGVFLYMG  762 (876)
T ss_pred             cHHHHHHHHHHHh
Confidence            9999998888765

>KOG3040|consensus

Probab=80.92  E-value=2.4  Score=34.50  Aligned_cols=72  Identities=10%  Similarity=0.038  Sum_probs=55.2

Q ss_pred             CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEe-c----ChhHHHHHhhcCCC--CeEEecChHHHHHHHhhh
Q psy2736         139 IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFN-L----KPSVVAVFEGVQPK--DFVVYYDSRELDHLLRSK  210 (211)
Q Consensus       139 ~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~-~----~~~v~~~l~~~g~~--~~~i~~~~~ea~~~l~~~  210 (211)
                      +-+.||+|++-++.-.++-.=.+..+.++.++..+.|+. .    +..+.+.|+++|.+  .-.||.+...|.++++++
T Consensus         8 ~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~   86 (262)
T KOG3040|consen    8 KGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEEN   86 (262)
T ss_pred             ceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhc
Confidence            579999999999866666666677788888899988873 2    45677778888843  236888888898888764

>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells

Probab=80.09  E-value=0.55  Score=43.05  Aligned_cols=34  Identities=9%  Similarity=0.208  Sum_probs=0.0

Q ss_pred             chHHHHHhHhHHHhhhcCCcccccchhhhHHhhh
Q psy2736           8 TQEILAVGVCNLASCFFQAYPVSGSISRSAVQSV   41 (211)
Q Consensus         8 nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~   41 (211)
                      .-+|.-+|+.|.++|++|--+.+|+..||..-.+
T Consensus       374 H~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~  407 (510)
T PF00955_consen  374 HLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVR  407 (510)
T ss_dssp             ----------------------------------
T ss_pred             cHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhC
Confidence            3468899999999999999999999888876554

Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2kln_A	130	Probable sulphate-transport transmembrane protein;	1e-05
3llo_A	143	Prestin; STAS domain, cell shape, glycoprotein, me	8e-05
4dgf_A	135	Sulfate transporter sulfate transporter family PR;	2e-04
4dgh_A	130	Sulfate permease family protein; STAS domain, anio	4e-04

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis} Length = 130

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 3/81 (3%)

Query: 110 LLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP---VVVDCSHIYGADFTAAKVIEVLCQNF 166
           ++   D  L F + +           +        V++       D TA   ++ L    
Sbjct: 17  VVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTEL 76

Query: 167 SRRGQPLFFFNLKPSVVAVFE 187
            RRG       +K  +     
Sbjct: 77  LRRGIVFAMARVKQDLRESLR 97

>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus} Length = 143

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 110 LLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP----VVVDCSHIYGADFTAAKVIEVLCQN 165
            +   +  + + + D  S+ + + +   G      V++D + +   D    K +  + + 
Sbjct: 32  KIFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKE 91

Query: 166 FSRRGQPLFFFNLKPSVVAVFE 187
           +   G  ++       VV    
Sbjct: 92  YGDVGIYVYLAGCSAQVVNDLT 113

>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A* Length = 135

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 3/71 (4%)

Query: 118 LIFPSVDYVSNLVTKHSIKQGIPVVV-DCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176
             F   D +  ++    I++   V +     +   D T    +    ++  +RG  L   
Sbjct: 33  FFFGVADRLKGVL--DVIEETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLS 90

Query: 177 NLKPSVVAVFE 187
            +   +     
Sbjct: 91  GVSDRLYGALN 101

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A* Length = 130

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 118 LIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFN 177
             F + +    ++        I +++    +   D T  + +E + Q+F +RG  +    
Sbjct: 30  FFFAAAETFERVMGSIQETPQI-LILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISG 88

Query: 178 LKPSVVAVFE 187
               V     
Sbjct: 89  ANSRVSQKLV 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
3llo_A	143	Prestin; STAS domain, cell shape, glycoprotein, me	99.83
2kln_A	130	Probable sulphate-transport transmembrane protein;	99.81
3ny7_A	118	YCHM protein, sulfate transporter; fatty acid bios	99.8
4dgh_A	130	Sulfate permease family protein; STAS domain, anio	99.79
2ka5_A	125	Putative anti-sigma factor antagonist TM_1081; ter	99.79
4dgf_A	135	Sulfate transporter sulfate transporter family PR;	99.75
3t6o_A	121	Sulfate transporter/antisigma-factor antagonist S;	99.75
4hyl_A	117	Stage II sporulation protein; structural genomics,	99.75
1th8_B	116	Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA,	99.74
1h4x_A	117	SPOIIAA, anti-sigma F factor antagonist; cell diff	99.71
1sbo_A	110	Putative anti-sigma factor antagonist TM1442; open	99.7
3oiz_A	99	Antisigma-factor antagonist, STAS; PSI-2, midwest	99.68
3zxn_A	123	RSBS, anti-sigma-factor antagonist (STAS) domain p	99.63
3qe7_A	429	Uracil permease; uracil transporter, URAA, transpo	98.61
3agd_A	456	Salt-tolerant glutaminase; glutaminase super famil	97.2
3bl4_A	124	Uncharacterized protein; structural genomics, join	93.45
2q3l_A	126	Uncharacterized protein; SPOIIAA-like fold, struct	90.4
3ghf_A	120	Septum site-determining protein MINC; structural g	85.07

>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}

Probab=99.83  E-value=1e-20  Score=142.84  Aligned_cols=104  Identities=9%  Similarity=0.108  Sum_probs=90.0

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhh----hcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSI----KQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV  182 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~----~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v  182 (211)
                      +++.+++++|+|+|+|+++|++.+.+..+    ..++.+||||++|++||+||+++|.++.++++++|++++|+++++++
T Consensus        29 ~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v  108 (143)
T 3llo_A           29 PGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQV  108 (143)
T ss_dssp             TTEEEEEECSCHHHHHHHHHHHC-----------CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHH
T ss_pred             CCeEEEEeCCCeEechHHHHHHHHHHHHccCCCCCceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            46899999999999999999999998875    23589999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCC-----eEEecChHHHHHHHhhh
Q psy2736         183 VAVFEGVQPKD-----FVVYYDSRELDHLLRSK  210 (211)
Q Consensus       183 ~~~l~~~g~~~-----~~i~~~~~ea~~~l~~~  210 (211)
                      +++|+++|+.+     ..+|+|.+||++.++++
T Consensus       109 ~~~l~~~gl~~~~~~~~~if~s~~~Al~~~~~~  141 (143)
T 3llo_A          109 VNDLTSNRFFENPALKELLFHSIHDAVLGSQVR  141 (143)
T ss_dssp             HHHHHHTTTTSSGGGGGGEESSHHHHHHHTSSC
T ss_pred             HHHHHhCCCeeccCccceEECcHHHHHHHHHhc
Confidence            99999999643     37999999999987653

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}

Probab=99.81  E-value=8.6e-20  Score=135.73  Aligned_cols=104  Identities=14%  Similarity=0.135  Sum_probs=95.6

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhh---cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIK---QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV  183 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~---~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~  183 (211)
                      +++.+++++|+|+|+|+++|++.+.+...+   .++.|||||++|++||+||+++|.++.++++++|+++++++++++++
T Consensus        14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~   93 (130)
T 2kln_A           14 PGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDLR   93 (130)
T ss_dssp             SSEEEEECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSHHH
T ss_pred             CCEEEEEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence            468999999999999999999999998765   34789999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCC-e---EEecChHHHHHHHhhh
Q psy2736         184 AVFEGVQPKD-F---VVYYDSRELDHLLRSK  210 (211)
Q Consensus       184 ~~l~~~g~~~-~---~i~~~~~ea~~~l~~~  210 (211)
                      ++|+++|..+ +   .+|+|.+||++.++.+
T Consensus        94 ~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~  124 (130)
T 2kln_A           94 ESLRAASLLDKIGEDHIFMTLPTAVQAFRRR  124 (130)
T ss_dssp             HHHHHCTTHHHHCTTEEESCHHHHHHHHTTC
T ss_pred             HHHHHcCChhhcCcceeECCHHHHHHHHHhh
Confidence            9999999643 4   8999999999988764

>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}

Probab=99.80  E-value=4.2e-20  Score=135.45  Aligned_cols=99  Identities=10%  Similarity=0.036  Sum_probs=89.9

Q ss_pred             CceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736         106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV  185 (211)
Q Consensus       106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~  185 (211)
                      .+++.+++++|+|||+|+++|++++.+.. ++++.+||||++|++||+||+++|.++.+++++ |++++++++++++++.
T Consensus        15 ~~~v~v~~l~G~L~f~~a~~l~~~l~~~~-~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~~v~~~   92 (118)
T 3ny7_A           15 PDDVLVLRVIGPLFFAAAEGLFTDLESRL-EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEFQPLRT   92 (118)
T ss_dssp             CTTEEEEEEESCBCHHHHHHHHHHHHTTC-TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCHHHHHH
T ss_pred             CCCEEEEEEeceeEehhHHHHHHHHHHhc-CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCHHHHHH
Confidence            35689999999999999999999998765 346899999999999999999999999999999 9999999999999999


Q ss_pred             HhhcCCCC-e---EEecChHHHHHH
Q psy2736         186 FEGVQPKD-F---VVYYDSRELDHL  206 (211)
Q Consensus       186 l~~~g~~~-~---~i~~~~~ea~~~  206 (211)
                      |+++|..+ +   ++|+|.+||++.
T Consensus        93 l~~~gl~~~~~~~~i~~s~~~Al~~  117 (118)
T 3ny7_A           93 MARAGIQPIPGRLAFFPNRRAAMAD  117 (118)
T ss_dssp             HHHTTCCCBTTTEEEESSHHHHTTT
T ss_pred             HHHcCChhhcChhhhcCCHHHHHhh
Confidence            99999543 2   599999999764

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*

Probab=99.79  E-value=2e-19  Score=133.73  Aligned_cols=103  Identities=12%  Similarity=0.101  Sum_probs=93.0

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF  186 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l  186 (211)
                      +++.+++++|+|+|+|+++|++.+.+. .++++.+||||++|++||+||+++|.++.++++++|++++|++++++++++|
T Consensus        19 ~~v~v~~~~G~L~f~~a~~~~~~l~~~-~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l   97 (130)
T 4dgh_A           19 RELAVYALEGPFFFAAAETFERVMGSI-QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQKL   97 (130)
T ss_dssp             TTEEEEECCSSCCHHHHHHHHHHHHHS-SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHHHHHHH
T ss_pred             CCEEEEEEeeeEeehhHHHHHHHHHHh-ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            468999999999999999999998764 4446899999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCC-e---EEecChHHHHHHHhhh
Q psy2736         187 EGVQPKD-F---VVYYDSRELDHLLRSK  210 (211)
Q Consensus       187 ~~~g~~~-~---~i~~~~~ea~~~l~~~  210 (211)
                      +++|+.+ +   ++|+|.+||++..++.
T Consensus        98 ~~~gl~~~~~~~~i~~s~~~Al~~~~~~  125 (130)
T 4dgh_A           98 VKAGIVKLVGEQNVYPVFEGALSAALTE  125 (130)
T ss_dssp             HHTTHHHHHCGGGEESSHHHHHHHHHHH
T ss_pred             HHcCChhhcCcccccCCHHHHHHHHHHH
Confidence            9999532 2   6999999999987654

>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*

Probab=99.79  E-value=3.9e-19  Score=131.42  Aligned_cols=105  Identities=16%  Similarity=0.095  Sum_probs=96.6

Q ss_pred             CceEEEEccCcceecccHHHHHHHHHH-HhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHH
Q psy2736         106 GIEYLLLTPDRCLIFPSVDYVSNLVTK-HSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVA  184 (211)
Q Consensus       106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~-~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~  184 (211)
                      .+++.+++++|+|+|.|++.|++.+.+ ...+.++.++||+++|++||+||+..|..+.++++++|+++.++++++++++
T Consensus        19 ~~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~~~~v~~   98 (125)
T 2ka5_A           19 VDDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVER   98 (125)
T ss_dssp             CSSCEEECCCSCCSGGGTHHHHHHHHHHTTTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHH
T ss_pred             eCCEEEEEEecEEecccHHHHHHHHHHHHhhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            346789999999999999999999999 7665568899999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCC-CeEEecChHHHHHHHhhh
Q psy2736         185 VFEGVQPK-DFVVYYDSRELDHLLRSK  210 (211)
Q Consensus       185 ~l~~~g~~-~~~i~~~~~ea~~~l~~~  210 (211)
                      +|+.+|.. .+.+|++.+||.+.+++|
T Consensus        99 ~l~~~gl~~~~~i~~s~~~Al~~~~~~  125 (125)
T 2ka5_A           99 VLSLTNLDRIVKIYDTISEAMEEVRRK  125 (125)
T ss_dssp             HHHHTTSTTTSEEESSHHHHHTTTTCC
T ss_pred             HHHHcCCCceEEecCCHHHHHHHhhcC
Confidence            99999965 579999999999887765

>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*

Probab=99.75  E-value=4.6e-19  Score=132.70  Aligned_cols=101  Identities=8%  Similarity=0.063  Sum_probs=91.8

Q ss_pred             eEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHh
Q psy2736         108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFE  187 (211)
Q Consensus       108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~  187 (211)
                      ++.+++++|+|+|+|+++|++.+.+. .++++.+||||++|++||+||+.+|.++.++++++|++++|++++++++++|+
T Consensus        23 ~i~v~~l~G~L~f~~a~~~~~~l~~~-~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~  101 (135)
T 4dgf_A           23 GVEIYEINGPFFFGVADRLKGVLDVI-EETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRLYGALN  101 (135)
T ss_dssp             TEEEEECCSSBSHHHHHHHTTGGGGC-SSCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHHHHHHHH
T ss_pred             CEEEEEeeceEEehhHHHHHHHHHHh-cCCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            68999999999999999999998764 34458999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCC-e---EEecChHHHHHHHhh
Q psy2736         188 GVQPKD-F---VVYYDSRELDHLLRS  209 (211)
Q Consensus       188 ~~g~~~-~---~i~~~~~ea~~~l~~  209 (211)
                      ++|+.+ +   .+|+|.+||++..++
T Consensus       102 ~~gl~~~~~~~~i~~t~~~Al~~~~~  127 (135)
T 4dgf_A          102 RFGFIEALGEERVFDHIDKALAYAKL  127 (135)
T ss_dssp             HHTHHHHHCGGGBCSSHHHHHHHHHH
T ss_pred             HcCChhhcCccceeCCHHHHHHHHHH
Confidence            999533 3   599999999998765

>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}

Probab=99.75  E-value=3.5e-18  Score=125.42  Aligned_cols=102  Identities=9%  Similarity=0.034  Sum_probs=93.7

Q ss_pred             ceEEEEccCcce---ecccHHHHHHHHHHHhh-hcCCcEEEecCCCcccchHHHHHHHHHHHHHHh-cCCcEEEEecChh
Q psy2736         107 IEYLLLTPDRCL---IFPSVDYVSNLVTKHSI-KQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSR-RGQPLFFFNLKPS  181 (211)
Q Consensus       107 ~~i~v~~~~g~L---~F~n~~~~~~~l~~~~~-~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~-~g~~l~l~~~~~~  181 (211)
                      +++.+++++|+|   +|.+++.|++.+.+.+. ++++.+|+|+++|+++|++|+..|..+.+++++ +|+++.+++++++
T Consensus        13 ~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~~~   92 (121)
T 3t6o_A           13 AQVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVSPY   92 (121)
T ss_dssp             TTEEEEECCGGGSEECHHHHHHHHHHHHHTTCCSSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEESCCHH
T ss_pred             CCEEEEEEccccccCchhhHHHHHHHHHHHHhhcCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            457899999998   89999999999988774 445889999999999999999999999999999 9999999999999


Q ss_pred             HHHHHhhcCCC-CeEEecChHHHHHHHh
Q psy2736         182 VVAVFEGVQPK-DFVVYYDSRELDHLLR  208 (211)
Q Consensus       182 v~~~l~~~g~~-~~~i~~~~~ea~~~l~  208 (211)
                      ++++|+.+|.. .+.+|++.+||.+.++
T Consensus        93 v~~~l~~~gl~~~~~i~~~~~~Al~~~~  120 (121)
T 3t6o_A           93 CVEVLQVTHIDEVWPRYSTKQEALLAMA  120 (121)
T ss_dssp             HHHHHTTCSGGGGSCEESSHHHHHHHTC
T ss_pred             HHHHHHHhCccceecccCCHHHHHHHhc
Confidence            99999999964 4699999999999875

>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}

Probab=99.75  E-value=3.7e-18  Score=124.30  Aligned_cols=102  Identities=16%  Similarity=0.081  Sum_probs=94.5

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF  186 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l  186 (211)
                      +++.+++++|+|+|.+++.|++.+.+...+.+ .+++|+++|++||++|+..|..+.++++++|+++.+++++++++++|
T Consensus        12 ~~~~v~~l~G~ld~~~~~~l~~~l~~~~~~~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l   90 (117)
T 4hyl_A           12 QGIDIITLHGHLDTRSSPAVQAAVLPRVTAKG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALVLVGVSEEIRDTM   90 (117)
T ss_dssp             TTEEEEEEEEEECSSSHHHHHHHHGGGCCTTC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred             CCEEEEEEEeEEcchhHHHHHHHHHHHHccCC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            35789999999999999999999998876655 89999999999999999999999999999999999999999999999


Q ss_pred             hhcCCC-CeEEecChHHHHHHHhh
Q psy2736         187 EGVQPK-DFVVYYDSRELDHLLRS  209 (211)
Q Consensus       187 ~~~g~~-~~~i~~~~~ea~~~l~~  209 (211)
                      +.+|+. .+.+|++.+||.+.+++
T Consensus        91 ~~~gl~~~~~i~~~~~~Al~~~~~  114 (117)
T 4hyl_A           91 EITGFWNFFTACASMDEALRILGS  114 (117)
T ss_dssp             HHHTCGGGCEEESCHHHHHHHHCC
T ss_pred             HHhCccceeeecCCHHHHHHHhcc
Confidence            999975 46999999999998864

>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A

Probab=99.74  E-value=5.2e-18  Score=122.87  Aligned_cols=103  Identities=15%  Similarity=0.059  Sum_probs=95.0

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV  185 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~  185 (211)
                      +++.+++++|+|+|.|++.|++.+.+...+. ++.+++|+++|+++|++|+..|.++.++++++|+++.++++++++++.
T Consensus        11 ~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~   90 (116)
T 1th8_B           11 QDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVKRL   90 (116)
T ss_dssp             TTEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHHHHHH
T ss_pred             CCEEEEEEeeeeccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHH
Confidence            3578999999999999999999999987654 578999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCC-CeEEecChHHHHHHHhh
Q psy2736         186 FEGVQPK-DFVVYYDSRELDHLLRS  209 (211)
Q Consensus       186 l~~~g~~-~~~i~~~~~ea~~~l~~  209 (211)
                      |+.+|.. .+.+|++.+||.+.+++
T Consensus        91 l~~~gl~~~~~i~~~~~~Al~~~~~  115 (116)
T 1th8_B           91 FDMSGLFKIIRVEADEQFALQALGV  115 (116)
T ss_dssp             HHHHTGGGTSEEESSHHHHHHHTTC
T ss_pred             HHHhCCceeEEEeCCHHHHHHhccC
Confidence            9999964 47999999999998764

>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A

Probab=99.71  E-value=2.6e-17  Score=119.59  Aligned_cols=101  Identities=10%  Similarity=0.052  Sum_probs=92.5

Q ss_pred             eEEEEccCcceecccHHHHHHHHHHHhhh-cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736         108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIK-QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF  186 (211)
Q Consensus       108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~-~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l  186 (211)
                      ++.+++++|+|+|.+++.|++.+.+...+ +++.+++|+++|+++|++|+..|..+.++++++|+++.+++++++++++|
T Consensus        11 ~~~vl~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l   90 (117)
T 1h4x_A           11 ETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTMRKVF   90 (117)
T ss_dssp             TEEEEEEEEEECHHHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHH
T ss_pred             CEEEEEEEeEEchhhHHHHHHHHHHHHhcCCCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            57899999999999999999999988754 35789999999999999999999999999999999999999999999999


Q ss_pred             hhcCCC-CeEEecChHHHHHHHhh
Q psy2736         187 EGVQPK-DFVVYYDSRELDHLLRS  209 (211)
Q Consensus       187 ~~~g~~-~~~i~~~~~ea~~~l~~  209 (211)
                      +.+|.. .+ +|++.+||.+.+++
T Consensus        91 ~~~gl~~~~-i~~~~~~Al~~~~~  113 (117)
T 1h4x_A           91 QFSGLGPWM-MDATEEEAIDRVRG  113 (117)
T ss_dssp             HHTTCGGGE-ECSCHHHHHHHTC-
T ss_pred             HHhCCceEE-EeCCHHHHHHHHHH
Confidence            999964 47 99999999988754

>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A

Probab=99.70  E-value=3.3e-17  Score=117.40  Aligned_cols=97  Identities=11%  Similarity=0.084  Sum_probs=89.2

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV  185 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~  185 (211)
                      +++.+++++|+|+|.+++.|++.+.+...+.+ +.+++|+++|+++|++|+..|.++.++++++|+++.++++++++++.
T Consensus        12 ~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~   91 (110)
T 1sbo_A           12 DDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRI   91 (110)
T ss_dssp             SSEEEEEEESCBSTTTTTHHHHHHHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHH
T ss_pred             CCEEEEEEeeEEccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            45789999999999999999999998876554 68999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCC-CeEEecChHHH
Q psy2736         186 FEGVQPK-DFVVYYDSREL  203 (211)
Q Consensus       186 l~~~g~~-~~~i~~~~~ea  203 (211)
                      |+.+|.. .+.+|++.+||
T Consensus        92 l~~~gl~~~~~i~~~~~~A  110 (110)
T 1sbo_A           92 LKLTHLDKIFKITDTVEEA  110 (110)
T ss_dssp             HHHTTCGGGSCBCSSGGGC
T ss_pred             HHHhCccceeeccCCcccC
Confidence            9999965 46899999875

>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A

Probab=99.68  E-value=8.8e-18  Score=119.33  Aligned_cols=83  Identities=13%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF  186 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l  186 (211)
                      .++.+++++|+|||+|+++|++.+..  .++++.+||||+++++||+||+++|.++.++++++|+++.+++++++++++|
T Consensus        15 g~~~v~~l~G~L~f~~a~~~~~~l~~--~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l   92 (99)
T 3oiz_A           15 GRERIYRVEGQLFYASVEDFMAAFDF--REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMNEASETMV   92 (99)
T ss_dssp             SSEEEEEEEEEECGGGHHHHHHTCCT--TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESHHHHHTTCC
T ss_pred             CCEEEEEEeeEEehhhHHHHHHHHhh--cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence            35789999999999999999999873  2346899999999999999999999999999999999999999999999999


Q ss_pred             hhcCC
Q psy2736         187 EGVQP  191 (211)
Q Consensus       187 ~~~g~  191 (211)
                      +++|.
T Consensus        93 ~~~g~   97 (99)
T 3oiz_A           93 DRLAI   97 (99)
T ss_dssp             -----
T ss_pred             HHhcC
Confidence            99984

>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*

Probab=99.63  E-value=4.3e-15  Score=109.47  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=93.8

Q ss_pred             eEEEEccCcceecccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736         108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF  186 (211)
Q Consensus       108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l  186 (211)
                      ++.++.+.|+|++.+++.+++.+.+.+.+. .+.+|+|+++|+++|+++++.|.++++.++..|.+++++|++|++.+.|
T Consensus        12 ~vlvv~l~G~lD~~~a~~l~~~ll~~i~~~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi~p~va~~l   91 (123)
T 3zxn_A           12 DYWVVAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKPAVAITL   91 (123)
T ss_dssp             TEEEEECCCCC-CHHHHHHHHHHHHHHTSSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECCCHHHHHHH
T ss_pred             CEEEEEEeEeeCHHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            378999999999999999999999988653 4789999999999999999999999999999999999999999999999


Q ss_pred             hhcCC--CCeEEecChHHHHHHHhh
Q psy2736         187 EGVQP--KDFVVYYDSRELDHLLRS  209 (211)
Q Consensus       187 ~~~g~--~~~~i~~~~~ea~~~l~~  209 (211)
                      ..+|.  ..+.+|+|.++|.++++.
T Consensus        92 ~~~G~~l~~i~~~~~l~~Al~~l~~  116 (123)
T 3zxn_A           92 TEMGLDLRGMATALNLQKGLDKLKN  116 (123)
T ss_dssp             HHTTCCSTTSEEESSHHHHHHHHHH
T ss_pred             HHhCCCccceEEECCHHHHHHHHHH
Confidence            99995  467999999999998764

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}

Probab=98.61  E-value=2.2e-08  Score=88.07  Aligned_cols=66  Identities=18%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             CcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------------------ccchhHHHH
Q psy2736           3 KSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------------------GKSVDATQE   64 (211)
Q Consensus         3 ~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------------------P~~~La~il   64 (211)
                      ++.+.|||+.++|++|+++|+||++|.+++-.++.++..+|++||++.+++|+                  |.++|+|+.
T Consensus       259 ~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~  338 (429)
T 3qe7_A          259 RDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVS  338 (429)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            45678999999999999999999999999888888999999999999888886                  999999987


Q ss_pred             HHHH
Q psy2736          65 ILAV   68 (211)
Q Consensus        65 i~~~   68 (211)
                      ++..
T Consensus       339 l~lf  342 (429)
T 3qe7_A          339 LLLY  342 (429)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A

Probab=97.20  E-value=0.00043  Score=60.19  Aligned_cols=72  Identities=13%  Similarity=0.110  Sum_probs=64.3

Q ss_pred             eEEEEccCcceecccHHHHHHHHHHHhh-------------------------------------------------hcC
Q psy2736         108 EYLLLTPDRCLIFPSVDYVSNLVTKHSI-------------------------------------------------KQG  138 (211)
Q Consensus       108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~-------------------------------------------------~~~  138 (211)
                      ++.+++++|.|.|+.++.+.+.+.+...                                                 ...
T Consensus       325 ~~~~~~l~g~~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (456)
T 3agd_A          325 DRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDGPI  404 (456)
T ss_dssp             TEEEEEEEEEESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCCCC
T ss_pred             cEEEEEeeceechhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            5789999999999999999999988700                                                 012


Q ss_pred             CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy2736         139 IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK  179 (211)
Q Consensus       139 ~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~  179 (211)
                      +.||||+++|+.+|-.+...+.+..++++..|.++++.++.
T Consensus       405 ~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~  445 (456)
T 3agd_A          405 RTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPE  445 (456)
T ss_dssp             CEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             cEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence            68999999999999999999999999999999999999876

>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}

Probab=93.45  E-value=0.18  Score=36.39  Aligned_cols=97  Identities=16%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             eEEEEccCc--ceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHH-
Q psy2736         108 EYLLLTPDR--CLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVA-  184 (211)
Q Consensus       108 ~i~v~~~~g--~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~-  184 (211)
                      +++.+++.+  .+.=..+..+-..+.+..++.+..+++|++....++..+-+.+.+-.     .=..+.+.+.++-.+- 
T Consensus        20 GIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~a~Al~g~s~~~r~i   94 (124)
T 3bl4_A           20 GILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATTADVSRGARAVFGRPC-----QASRIALLGSSPVDRVL   94 (124)
T ss_dssp             SCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSSTHHHHHHHHHHCCCC-----CEEEEEEECSSGGGHHH
T ss_pred             CEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEcccccCCCHHHHHHHhCcc-----ceeEEEEEcCCHHHHHH
Confidence            577778777  78888888888888886555557899999999889988888776622     1124667777643322 


Q ss_pred             --HH-hhcC-CCCeEEecChHHHHHHHhh
Q psy2736         185 --VF-EGVQ-PKDFVVYYDSRELDHLLRS  209 (211)
Q Consensus       185 --~l-~~~g-~~~~~i~~~~~ea~~~l~~  209 (211)
                        .+ ...+ .....+|.|++||...|++
T Consensus        95 a~~~l~~~~~~~pt~fF~te~eA~aWL~~  123 (124)
T 3bl4_A           95 ANFFLGINAVPCPTKFFTSERDALTWLAL  123 (124)
T ss_dssp             HHHHHHHHCCSSCEEEESCHHHHHHHHTC
T ss_pred             HHHHHHhcCCCCCceeeCCHHHHHHHHHh
Confidence              22 2223 3456899999999999875

>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2

Probab=90.40  E-value=2  Score=30.57  Aligned_cols=102  Identities=15%  Similarity=0.086  Sum_probs=69.1

Q ss_pred             CceEEEEccCcceecccHHHHHHHHHHHhhhcC---CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736         106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQG---IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV  182 (211)
Q Consensus       106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~---~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v  182 (211)
                      .+++..+++.|.|.-...+.+...+.+.+++..   -.+++|++.....+..++--=..+-....+.=.++.+++-++=+
T Consensus        18 ~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~~~~i~ll~~~~~f~G~~~~a~~~d~k~~~~h~~~~~RiAvV~d~~W~   97 (126)
T 2q3l_A           18 DDFYLAFKAVGKLTHEDYEQMTPLLESALAGIKTPEIVALIDITELDGLSLHAAWDDLKLGLKHGKEFKRVAIIGQGELQ   97 (126)
T ss_dssp             TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEEECHHHHHHHHHHHHHHGGGEEEEEEECCSHHH
T ss_pred             CCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCCCceEEEEEEecCCCCCCHHHHHHHHHhhhhHHhcCCEEEEEcChHHH
Confidence            346889999999999999999999988877643   36889998888777554322112212222333467788776655


Q ss_pred             HHHHhhcC---CCCeEEecChHHHHHHH
Q psy2736         183 VAVFEGVQ---PKDFVVYYDSRELDHLL  207 (211)
Q Consensus       183 ~~~l~~~g---~~~~~i~~~~~ea~~~l  207 (211)
                      ....+..+   ....+.|++.+||.+-|
T Consensus        98 ~~~~~~~~~~~~~evk~F~~~~~A~~Wl  125 (126)
T 2q3l_A           98 EWATRVANWFTPGEFKFFEDKRDALDWL  125 (126)
T ss_dssp             HHHHHHHHHHCSSEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhhccCCceeccCCHHHHHHHh
Confidence            55554444   34578888888888765

>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}

Probab=85.07  E-value=4.1  Score=28.83  Aligned_cols=66  Identities=11%  Similarity=0.113  Sum_probs=47.4

Q ss_pred             ccHHHHHHHHHHHhhhc-----CCcEEEecCCCc-ccchHHHHHHHHHHHHHHhcCCcE-EEEecChh-HHHHHhhcCCC
Q psy2736         121 PSVDYVSNLVTKHSIKQ-----GIPVVVDCSHIY-GADFTAAKVIEVLCQNFSRRGQPL-FFFNLKPS-VVAVFEGVQPK  192 (211)
Q Consensus       121 ~n~~~~~~~l~~~~~~~-----~~~vIlD~s~v~-~iD~t~l~~L~~~~~~~~~~g~~l-~l~~~~~~-v~~~l~~~g~~  192 (211)
                      ...+.+.+.+.+.+++.     ..+||||++.+. .+|      |..+.+.++++|..+ -+.+++++ .++..+..|+.
T Consensus        25 ~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~vGV~g~~~~~~~~~a~~~GLp   98 (120)
T 3ghf_A           25 AEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLESPVN------WPELHKIVTSTGLRIIGVSGCKDASLKVEIDRMGLP   98 (120)
T ss_dssp             CCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhChHhhCCCcEEEEccccCChHH------HHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHCCCC
Confidence            56677888888777665     368999999885 233      666778888888765 45566645 77888888853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1vc1a_	110	c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa	3e-05
d1th8b_	115	c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa	7e-05

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]} Length = 110

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP-VVVDCSHIYGADFTAAKVIEVLCQNF 166
           +  ++     +   +   +   +           +V+D S +   D      + V+ ++ 
Sbjct: 13  DKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDA 72

Query: 167 SRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRE 202
              G+     +LK S+  + +           D+ E
Sbjct: 73  KINGKEFILSSLKESISRILKLTHLDKIFKITDTVE 108

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]} Length = 115

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.7 bits (90), Expect = 7e-05
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP-VVVDCSHIYGADFTAAKVIEVLCQNF 166
           + L++     L   + + +   VT     + I  +V++   +   D +   VI    +  
Sbjct: 11  DVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQI 70

Query: 167 SRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRE 202
              G  +    + P+V  +F+       +      +
Sbjct: 71  KNVGGQMVVCAVSPAVKRLFDMSGLFKIIRVEADEQ 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1h4xa_	111	Anti-sigma factor antagonist SpoIIaa {Bacillus sph	99.8
d1th8b_	115	Anti-sigma factor antagonist SpoIIaa {Bacillus ste	99.77
d1vc1a_	110	Anti-sigma factor antagonist SpoIIaa {Thermotoga m	99.76
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	84.79

>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus sphaericus [TaxId: 1421]

Probab=99.80  E-value=5.9e-20  Score=131.37  Aligned_cols=101  Identities=10%  Similarity=0.075  Sum_probs=94.5

Q ss_pred             eEEEEccCcceecccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736         108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF  186 (211)
Q Consensus       108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l  186 (211)
                      ++.+++++|+|+|+|+++|++.+.+.+.++ ++.+|+||++|+++|+||++.|..+.+.++++|++++++|+++++++.|
T Consensus        10 ~~~vv~~~G~L~~~~a~~~~~~~~~~i~~~~~~~vvlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l   89 (111)
T d1h4xa_          10 ETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTMRKVF   89 (111)
T ss_dssp             TEEEEEEEEEECHHHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHH
T ss_pred             CEEEEEEEEEEEHHHHHHHHHHHHHHHhcCCCcEEEEEEECCcccCchHHHHHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence            468999999999999999999999887654 5789999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCeEEecChHHHHHHHh
Q psy2736         187 EGVQPKDFVVYYDSRELDHLLR  208 (211)
Q Consensus       187 ~~~g~~~~~i~~~~~ea~~~l~  208 (211)
                      +.+|..++..|+|.+||.+.+|
T Consensus        90 ~~~gl~~~~~~~t~~eAl~~i~  111 (111)
T d1h4xa_          90 QFSGLGPWMMDATEEEAIDRVR  111 (111)
T ss_dssp             HHTTCGGGEECSCHHHHHHHTC
T ss_pred             HHcCCCeEEeeCCHHHHHHhcC
Confidence            9999888889999999998764

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.77  E-value=3.9e-19  Score=127.55  Aligned_cols=101  Identities=16%  Similarity=0.091  Sum_probs=94.2

Q ss_pred             eEEEEccCcceecccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736         108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF  186 (211)
Q Consensus       108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l  186 (211)
                      ++.+++++|+|+|.|++.|++.+.+.++++ .+.+|+||++++++|++|++.|.++.+.++++|++++++|++++++++|
T Consensus        11 ~v~vv~l~G~L~~~~~~~~~~~l~~~~~~~~~~~iilDls~v~~iDssg~~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l   90 (115)
T d1th8b_          11 DVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVKRLF   90 (115)
T ss_dssp             TEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHHHHHHH
T ss_pred             CEEEEEEEEEEEHHHHHHHHHHHHHHHhcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            589999999999999999999999887654 4789999999999999999999999999999999999999999999999


Q ss_pred             hhcCC-CCeEEecChHHHHHHHh
Q psy2736         187 EGVQP-KDFVVYYDSRELDHLLR  208 (211)
Q Consensus       187 ~~~g~-~~~~i~~~~~ea~~~l~  208 (211)
                      +++|+ ..+++|++.++|.+.|.
T Consensus        91 ~~~gl~~~~~i~~~~~~Al~~l~  113 (115)
T d1th8b_          91 DMSGLFKIIRVEADEQFALQALG  113 (115)
T ss_dssp             HHHTGGGTSEEESSHHHHHHHTT
T ss_pred             HHcCCCceeEEeCCHHHHHHHhc
Confidence            99996 45799999999999874

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1e-18  Score=124.38  Aligned_cols=97  Identities=11%  Similarity=0.079  Sum_probs=89.9

Q ss_pred             ceEEEEccCcceecccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736         107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV  185 (211)
Q Consensus       107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~  185 (211)
                      .++.|++++|+|+|.|++.|++.+.+.+.++ .+.+|+|++.++++|++|++.|.++.+.++++|+++++++++++++++
T Consensus        12 ~~~~vv~l~G~l~~~~~~~~~~~l~~~~~~~~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~~~~~l~l~~~~~~v~~~   91 (110)
T d1vc1a_          12 DDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRI   91 (110)
T ss_dssp             TTEEEEEEESCBSTTTHHHHHHHHHHHHHHCCCSEEEEEEEECCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHH
T ss_pred             CCEEEEEEEEEEEhHHHHHHHHHHHHHHhcCCCCEEEEEEECCCccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            3578999999999999999999999987654 478999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCC-CeEEecChHHH
Q psy2736         186 FEGVQPK-DFVVYYDSREL  203 (211)
Q Consensus       186 l~~~g~~-~~~i~~~~~ea  203 (211)
                      |+.+|.. .+++|+|.+||
T Consensus        92 l~~~gl~~~~~i~~t~~~A  110 (110)
T d1vc1a_          92 LKLTHLDKIFKITDTVEEA  110 (110)
T ss_dssp             HHHHTGGGTSEEESSTTTC
T ss_pred             HHHcCCCceeeccCChHhC
Confidence            9999964 47999999885

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.79  E-value=3  Score=28.86  Aligned_cols=83  Identities=6%  Similarity=0.030  Sum_probs=46.7

Q ss_pred             cHHHHHHHHHHHhhhcC-CcEEE--ecCCCcccchHHHHHHHHHHHHHHhc--CCcEEEEec----ChhHHHHHhhcCCC
Q psy2736         122 SVDYVSNLVTKHSIKQG-IPVVV--DCSHIYGADFTAAKVIEVLCQNFSRR--GQPLFFFNL----KPSVVAVFEGVQPK  192 (211)
Q Consensus       122 n~~~~~~~l~~~~~~~~-~~vIl--D~s~v~~iD~t~l~~L~~~~~~~~~~--g~~l~l~~~----~~~v~~~l~~~g~~  192 (211)
                      +.+.+.+.++...+++. ..+++  ........+.  .+....+.+.+++.  ...++.+.+    .++.++.|+..|  
T Consensus        62 ~~~~~~~~l~~~~~d~~vd~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~kpv~~~~~~~~~~~~~~~~l~~~G--  137 (163)
T d2csua3          62 RGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTL--TEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNG--  137 (163)
T ss_dssp             CHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCS--SHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTT--
T ss_pred             CHHHHHHHHHHHHcCCCcCEEEEeeccCCcccccH--HHHHHHHHHHHHHhcCCCcEEEEECCCCChHHHHHHHHHCC--
Confidence            44677777776665433 34433  3333222222  22333334434332  345665533    356677788776  


Q ss_pred             CeEEecChHHHHHHHhh
Q psy2736         193 DFVVYYDSRELDHLLRS  209 (211)
Q Consensus       193 ~~~i~~~~~ea~~~l~~  209 (211)
                       +.+|++.+++.+++..
T Consensus       138 -ip~f~~pe~a~~Al~~  153 (163)
T d2csua3         138 -IPTYERPEDVASAAYA  153 (163)
T ss_dssp             -CCEESSHHHHHHHHHH
T ss_pred             -CCcCCCHHHHHHHHHH
Confidence             6789999999998764