Psyllid ID: psy2747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
Protein Sequence
MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS
Secondary Structure (PSIPRED)
cccHHHHHHHcccccccccccHHHHHHcccEEcccccEEEEcccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEcccccEEEEcccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHcccEEcccccEEEEcccccccccccccccHHHHHHHccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHccEEccccccEEEEccccccccccccccHHHHHHHcccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEcHHHHcccccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
HHcHHHHHHccccccccccccHHHHHHccEEEccccccEEEcccccEEEcccccccHHHHHHHHccccHHHHccccccccccccccccccHHHHccccccccccccccHHHHHccccEEcccccccccccccccccHHcHHHHHHccccccccccccHHHHHHccEEEccccccEEEcccccEEEcccccccHHHHHHHHccccHHHHccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHccEEEccccccEEEcccccEEEcccccccHHHHHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHcccEEcccccccccccccEEccccccHHHHcHHHHHHHHHHccccccccHHHHHHccEEEccccccEEEcccccEEEcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHccccccccccccHHHccHHHHHHccEEEEcccEEEEEEccccEEEHHHHHHHHccccccHHHHHcEEEEEcc
Coil and Loop (DISEMBL)
mnfersrlrtfqswpsnspvsskriakagffytghqhevqcfacgvkisnwtyndsvmakhrakdpgcpfvknpeasgnvsieneevYKLEsgrlatfnnwpvsfivtpealaKTGFYYlkqgdkkyFLISFRSITMNFERSrlrtfqswpsnspvsskriakagffytghqhevqcfacgvkisnwtyndsvmakhrakdpgcpfvknpeasgnvsieneevYKLEsgrlatfnnwpvsfivtpealaKTGFYylkqgdkvkcAYCSVIIGrweqgdnaesehkrqspncpflardNQATQANMINLraldakdpgcpfvknpeasgnvsieneevYKLEsgrlatfnnwpvsfivtpealaKTGFYYLKqgdkdmrdlgvqnhrvpkhpnlstldsrvltfttwprdsplgpqslavagffydgqgdwvrcfhcdgglrkwtamdepwseharwfpechFVMLVKGEQfiedtikanppitdevfftpKFFVKSLEEEVRRLREARLCKIcmdkevgvvllpCGHLVTCVlcasslprcpvcrenIKATVRTFLS
Flexible Loop (DISEMBL)
mnfersrlrtfqswpsnspvsSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAkdpgcpfvknpeasgnvsiENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFLISFRSITMNFERSRLrtfqswpsnspvsSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAkdpgcpfvknpeasgnvsiENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKnpeasgnvsieNEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNhrvpkhpnlstldsRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCAsslprcpvcrenikatvrtfls
Low Complexity Region (SEG)
MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSleeevrrlrearlCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS
Disordered region (IsUnstruct)
************************IAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHR*****CPFV**********IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSW********KRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHR*****CPFV**********IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWE******************************INLRAL********F***********IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDM*DLGV**********LSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRT***
Disordered Region (DISOPRED)
*NFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEA**********VYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS
Disordered Region (DISEMBL)
*********************SKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFLISFRSITMNFERSRLRTF**********SKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQG***********PNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS
Disordered Region (DISPRO)
**F*RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNV*********L*SGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQATQANMINLRALD******************SIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPIT*****************VRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	557	2.2.26 [Sep-21-2011]
Q60989	496	E3 ubiquitin-protein liga	yes	N/A	0.601	0.675	0.283	2e-51
P98170	497	E3 ubiquitin-protein liga	yes	N/A	0.610	0.684	0.278	7e-50
Q9R0I6	496	E3 ubiquitin-protein liga	yes	N/A	0.601	0.675	0.281	8e-50
O62640	358	Putative inhibitor of apo	yes	N/A	0.631	0.983	0.330	7e-49
O08863	600	Baculoviral IAP repeat-co	no	N/A	0.495	0.46	0.351	3e-47
Q90660	611	Inhibitor of apoptosis pr	no	N/A	0.509	0.464	0.347	2e-45
Q13489	604	Baculoviral IAP repeat-co	no	N/A	0.511	0.471	0.332	1e-44
Q13490	618	Baculoviral IAP repeat-co	no	N/A	0.513	0.462	0.343	3e-44
Q62210	612	Baculoviral IAP repeat-co	no	N/A	0.513	0.467	0.358	3e-43
Q24307	498	Apoptosis 2 inhibitor OS=	yes	N/A	0.434	0.485	0.338	4e-43

>sp|Q60989|XIAP_MOUSE E3 ubiquitin-protein ligase XIAP OS=Mus musculus GN=Xiap PE=1 SV=2

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/479 (28%), Positives = 208/479 (43%), Gaps = 144/479 (30%)

Query: 221 EEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNA 280
           +E +  E  RL TF N+P S  V+   LA+ GF Y  +GD V+C  C   I RW+ GD+A
Sbjct: 20  DEEFVEEFNRLKTFANFPSSSPVSASTLARAGFLYTGEGDTVQCFSCHAAIDRWQYGDSA 79

Query: 281 ESEHKRQSPNCPFLAR---DNQATQANMINLRALDAKDPGCPFVKNPEA----------- 326
              H+R SPNC F+     +N A Q+    ++    K   C   +NP A           
Sbjct: 80  VGRHRRISPNCRFINGFYFENGAAQSTNPGIQNGQYKSENCVGNRNPFAPDRPPETHADY 139

Query: 327 ---SGNVSIENEEVYKL------ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK-- 375
              +G V   ++ +Y        E  RL +F NWP    +TP  LA  G YY    D+  
Sbjct: 140 LLRTGQVVDISDTIYPRNPAMCSEEARLKSFQNWPDYAHLTPRELASAGLYYTGADDQVQ 199

Query: 376 ------------------------------------DMR-DLGVQNHR-------VPKHP 391
                                               ++R + GV + R        P++P
Sbjct: 200 CFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNVNVRSESGVSSDRNFPNSTNSPRNP 259

Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
            ++  ++R++TF TW   S +  + LA AGF+  G+GD V+CFHC GGL  W   ++PW 
Sbjct: 260 AMAEYEARIVTFGTWT--SSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWE 317

Query: 452 EHARWFPECHFVMLVKGEQF---------------------------IEDTIKANPPITD 484
           +HA+W+P C +++  KG+++                           I+DTI  NP + +
Sbjct: 318 QHAKWYPGCKYLLDEKGQEYINNIHLTHSLEESLGRTAEKTPSLTKKIDDTIFQNPMVQE 377

Query: 485 EV--FFTPKFFVKSLEEEV----------------------------------------- 501
            +   F+ K   K++EE++                                         
Sbjct: 378 AIRMGFSFKDIKKTMEEKIQTSGSSYLSLEVLIADLVSAQKDNTEDESSQTSLQKDISTE 437

Query: 502 ---RRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
              RRL+E +LCKICMD+ + +V +PCGHLVTC  CA ++ +CP+C   I    + F+S
Sbjct: 438 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 496

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, copper homeostasis, mitogenic kinase signaling, cell proliferation, as well as cell invasion and metastasis. Acts as a direct caspase inhibitor. Directly bind to the active site pocket of CASP3 and CASP7 and obstructs substrate entry. Inactivates CASP9 by keeping it in a monomeric, inactive state. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and the target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, CASP3, CASP7, CASP8, CASP9, MAP3K2/MEKK2, DIABLO/SMAC, AIFM1, CCS and BIRC5/survivin. Ubiquitinion of CCS leads to enhancement of its chaperone activity toward its physiologic target, SOD1, rather than proteasomal degradation. Ubiquitinion of MAP3K2/MEKK2 and AIFM1 does not lead to proteasomal degradation. Plays a role in copper homeostasis by ubiquitinationg COMMD1 and promoting its proteasomal degradation. Can also function as E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Regulates the BMP signaling pathway and the SMAD and MAP3K7/TAK1 dependent pathways leading to NF-kappa-B and JNK activation. Acts as an important regulator of innate immune signaling via regulation of Nodlike receptors (NLRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Acts as a positive regulator of Wnt signaling and ubiquitinates TLE1, TLE2, TLE3, TLE4 and AES. Ubiquitination of TLE3 results in inhibition of its interaction with TCF7L2/TCF4 thereby allowing efficient recruitment and binding of the transcriptional coactivator beta-catenin to TCF7L2/TCF4 that is required to initiate a Wnt-specific transcriptional program.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P98170|XIAP_HUMAN E3 ubiquitin-protein ligase XIAP OS=Homo sapiens GN=XIAP PE=1 SV=2

 Score =  198 bits (504), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 204/485 (42%), Gaps = 145/485 (29%)

Query: 216 VSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWE 275
             I  EE +  E  RL TF N+P    V+   LA+ GF Y  +GD V+C  C   + RW+
Sbjct: 15  ADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQ 74

Query: 276 QGDNAESEHKRQSPNCPFLA---RDNQATQA-------------NMINLRALDAKD-PGC 318
            GD+A   H++ SPNC F+     +N ATQ+             N +  R   A D P  
Sbjct: 75  YGDSAVGRHRKVSPNCRFINGFYLENSATQSTNSGIQNGQYKVENYLGSRDHFALDRPSE 134

Query: 319 PFVKNPEASGNVSIENEEVYKL------ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQ 372
                   +G V   ++ +Y        E  RL +F NWP    +TP  LA  G YY   
Sbjct: 135 THADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGI 194

Query: 373 GDKDM---------------------------------RDLGVQNH-------------- 385
           GD+                                   R+L +++               
Sbjct: 195 GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNLNIRSESDAVSSDRNFPNST 254

Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
            +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W  
Sbjct: 255 NLPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKP 312

Query: 446 MDEPWSEHARWFPECHFVMLVKGEQF---------------------------IEDTIKA 478
            ++PW +HA+W+P C +++  KG+++                           I+DTI  
Sbjct: 313 SEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTTEKTPSLTRRIDDTIFQ 372

Query: 479 NPPITDEVFFTPKF----------------FVKSLE------------------------ 498
           NP + + +     F                  KSLE                        
Sbjct: 373 NPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDSMQDESSQTSLQ 432

Query: 499 ------EEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATV 552
                 E++RRL+E +LCKICMD+ + +V +PCGHLVTC  CA ++ +CP+C   I    
Sbjct: 433 KEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQ 492

Query: 553 RTFLS 557
           + F+S
Sbjct: 493 KIFMS 497

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, copper homeostasis, mitogenic kinase signaling, cell proliferation, as well as cell invasion and metastasis. Acts as a direct caspase inhibitor. Directly bind to the active site pocket of CASP3 and CASP7 and obstructs substrate entry. Inactivates CASP9 by keeping it in a monomeric, inactive state. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and the target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, CASP3, CASP7, CASP8, CASP9, MAP3K2/MEKK2, DIABLO/SMAC, AIFM1, CCS and BIRC5/survivin. Ubiquitinion of CCS leads to enhancement of its chaperone activity toward its physiologic target, SOD1, rather than proteasomal degradation. Ubiquitinion of MAP3K2/MEKK2 and AIFM1 does not lead to proteasomal degradation. Plays a role in copper homeostasis by ubiquitinationg COMMD1 and promoting its proteasomal degradation. Can also function as E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Regulates the BMP signaling pathway and the SMAD and MAP3K7/TAK1 dependent pathways leading to NF-kappa-B and JNK activation. Acts as an important regulator of innate immune signaling via regulation of Nodlike receptors (NLRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Acts as a positive regulator of Wnt signaling and ubiquitinates TLE1, TLE2, TLE3, TLE4 and AES. Ubiquitination of TLE3 results in inhibition of its interaction with TCF7L2/TCF4 thereby allowing efficient recruitment and binding of the transcriptional coactivator beta-catenin to TCF7L2/TCF4 that is required to initiate a Wnt-specific transcriptional program.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9R0I6|XIAP_RAT E3 ubiquitin-protein ligase XIAP OS=Rattus norvegicus GN=Xiap PE=2 SV=1

 Score =  198 bits (504), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 206/479 (43%), Gaps = 144/479 (30%)

Query: 221 EEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNA 280
           +E +  E  RL TF N+P S  V+   LA+ GF Y  +GD V+C  C   + RW+ GD+A
Sbjct: 20  DEEFVEEFNRLKTFANFPSSSPVSASTLARAGFLYTGEGDTVQCFSCHAAVDRWQYGDSA 79

Query: 281 ESEHKRQSPNCPFLAR---DNQATQANMINLRALDAKDPGCPFVKNPEA----------- 326
              H+R SPNC F+     +N ATQ+    ++    K   C   +N  A           
Sbjct: 80  VGRHRRISPNCRFINGFYFENGATQSTSPGIQNGQYKSENCVGNRNHFALDRPSETHADY 139

Query: 327 ---SGNVSIENEEVYKL------ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK-- 375
              +G V   ++ +Y        E  RL TF NWP    ++P  LA  G YY    D+  
Sbjct: 140 LLRTGQVVDISDTIYPRNPAMCSEEARLKTFQNWPDYAHLSPRELASAGLYYTGIDDQVQ 199

Query: 376 ------------------------------------DMR-DLGVQNHR-------VPKHP 391
                                               ++R + GV + R        P++P
Sbjct: 200 CFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNVNVRSESGVSSDRNFPNSTNSPRNP 259

Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
            ++  D+R++TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   ++PW 
Sbjct: 260 AMAEYDARIVTFGTWLYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWE 317

Query: 452 EHARWFPECHFVMLVKGEQF---------------------------IEDTIKANPPITD 484
           +HA+W+P C +++  KG+++                           I+DTI  NP + +
Sbjct: 318 QHAKWYPGCKYLLDEKGQEYINNIHLTHSLGESVVRTAEKTPSVTKKIDDTIFQNPMVQE 377

Query: 485 EV--FFTPKFFVKSLE-------------------------------------------- 498
            +   F  K   K++E                                            
Sbjct: 378 AIRMGFNFKDIKKTMEEKLQTSGSNYLSLEVLIADLVSAQKDNSQDESSQTSLQKDISTE 437

Query: 499 EEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
           E++RRL+E +LCKICMD+ + +V +PCGHLVTC  CA ++ +CP+C   I    + F+S
Sbjct: 438 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCCTVITFKQKIFMS 496

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, copper homeostasis, mitogenic kinase signaling, cell proliferation, as well as cell invasion and metastasis. Acts as a direct caspase inhibitor. Directly bind to the active site pocket of CASP3 and CASP7 and obstructs substrate entry. Inactivates CASP9 by keeping it in a monomeric, inactive state. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and the target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, CASP3, CASP7, CASP8, CASP9, MAP3K2/MEKK2, DIABLO/SMAC, AIFM1, CCS and BIRC5/survivin. Ubiquitinion of CCS leads to enhancement of its chaperone activity toward its physiologic target, SOD1, rather than proteasomal degradation. Ubiquitinion of MAP3K2/MEKK2 and AIFM1 does not lead to proteasomal degradation. Plays a role in copper homeostasis by ubiquitinationg COMMD1 and promoting its proteasomal degradation. Can also function as E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Regulates the BMP signaling pathway and the SMAD and MAP3K7/TAK1 dependent pathways leading to NF-kappa-B and JNK activation. Acts as an important regulator of innate immune signaling via regulation of Nodlike receptors (NLRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Acts as a positive regulator of Wnt signaling and ubiquitinates TLE1, TLE2, TLE3, TLE4 and AES. Ubiquitination of TLE3 results in inhibition of its interaction with TCF7L2/TCF4 thereby allowing efficient recruitment and binding of the transcriptional coactivator beta-catenin to TCF7L2/TCF4 that is required to initiate a Wnt-specific transcriptional program.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O62640|PIAP_PIG Putative inhibitor of apoptosis OS=Sus scrofa GN=PIAP PE=2 SV=1

 Score =  195 bits (496), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 141/427 (33%), Positives = 187/427 (43%), Gaps = 75/427 (17%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           MN E+ RL TFQ WP    +S   +AKAGF+Y G    V CFACG K+SNW   D  M +
Sbjct: 1   MNTEKDRLLTFQMWPLTF-LSPADLAKAGFYYIGPGDRVACFACGGKLSNWEPKDDAMTE 59

Query: 197 HRAKDPGCPFVKNP-EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYY 255
           H    P CPF+ N  + S   ++ N  + +  + R  TF NWP S  V PE LA  GFYY
Sbjct: 60  HLRHFPNCPFLGNQLQDSSRYTVSNLSM-QTYAARFKTFCNWPSSIPVHPEQLASAGFYY 118

Query: 256 LKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDN-----QATQANMINLRA 310
           +   D VKC  C   +  WE GD+   EH +  P C +L R          QA+  +L  
Sbjct: 119 MGHSDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEYLIRIKGQEFISRVQASYPHLLE 178

Query: 311 LDAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYL 370
                   P  +N E   ++S+       +   R+A F +      +    L        
Sbjct: 179 QLLSTSDNPEDENAEPPNDLSL-------IRKNRMALFQHLTCVLPILDSLLIA------ 225

Query: 371 KQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDW 430
                  R +  Q H V K    ++L +R L       D  L   + A   F    Q   
Sbjct: 226 -------RVISEQEHDVIKQKTQTSLQARELI------DIILVKGNYAATIFKNSLQ--- 269

Query: 431 VRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTP 490
                          +D    +H                 F++  IK  P        T 
Sbjct: 270 --------------EIDPMLYKHL----------------FVQQDIKYIP--------TE 291

Query: 491 KFFVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKA 550
                S+EE++RRL+E R CK+CMDKEV +V +PCGHLV C  CA SL +CP+CR  IK 
Sbjct: 292 NVSDLSMEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRGTIKG 351

Query: 551 TVRTFLS 557
           TVRTFLS
Sbjct: 352 TVRTFLS 358

Sus scrofa (taxid: 9823)

>sp|O08863|BIRC3_MOUSE Baculoviral IAP repeat-containing protein 3 OS=Mus musculus GN=Birc3 PE=1 SV=2

 Score =  190 bits (482), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/313 (35%), Positives = 163/313 (52%), Gaps = 37/313 (11%)

Query: 4   ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
           E  RL T+ ++P   PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS M KHR 
Sbjct: 27  ELYRLSTYSAFPRGVPVSERSLARAGFYYTGANDKVKCFCCGLMLDNWKQGDSPMEKHRK 86

Query: 64  KDPGCPFVK--NP----EASGNVSIENEEVYKLE------------SGRLATFNNWPVSF 105
             P C FV+  NP    EAS   S+ +  +  +             SG  ++F + PV+F
Sbjct: 87  LYPSCNFVQTLNPANSLEASPRPSLPSTAMSTMPLSFASSENTGYFSGSYSSFPSDPVNF 146

Query: 106 IVTPE--ALAKTGFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAK 163
               +  AL+ + +++                 MN E++RL T+++WP  S +S  ++AK
Sbjct: 147 RANQDCPALSTSPYHF----------------AMNTEKARLLTYETWPL-SFLSPAKLAK 189

Query: 164 AGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEV 223
           AGF+Y G    V CFAC  K+SNW   D  M++H+   P CPF+K+   S +    +   
Sbjct: 190 AGFYYIGPGDRVACFACDGKLSNWERKDDAMSEHQRHFPSCPFLKDLGQSASRYTVSNLS 249

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
            +  + R+ TF+NWP S +V  + LA  GFYY    D VKC  C   +  WE GD+   E
Sbjct: 250 MQTHAARIRTFSNWPSSALVHSQELASAGFYYTGHSDDVKCFCCDGGLRCWESGDDPWVE 309

Query: 284 HKRQSPNCPFLAR 296
           H +  P C +L R
Sbjct: 310 HAKWFPRCEYLLR 322

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF1, and BCL10. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q90660|BIR_CHICK Inhibitor of apoptosis protein OS=Gallus gallus GN=ITA PE=2 SV=1

 Score =  184 bits (467), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 159/311 (51%), Gaps = 27/311 (8%)

Query: 4   ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
           E  R+ TF ++P N PVS +R+A+AGF+YTG Q +V+CF+CG+ + NW   D+ M KH+ 
Sbjct: 30  ELYRMSTFSTFPVNVPVSERRLARAGFYYTGVQDKVKCFSCGLVLDNWQPGDNAMEKHKQ 89

Query: 64  KDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPV--SFIVTPEALAKTGFY--- 118
             P C FV+N  +  N+ +     +      L   N  P   S  ++P +  + G++   
Sbjct: 90  VYPSCSFVQNMLSLNNLGLSTHSAF----SPLVASNLSPSLRSMTLSP-SFEQVGYFSGS 144

Query: 119 ----------YLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFY 168
                          D  +     ++ +M+ E +RLRT  +WP    +    +AKAG   
Sbjct: 145 FSSFPRDPVTTRAAEDLSHLRSKLQNPSMSTEEARLRTSHAWPLMC-LWPAEVAKAGLDD 203

Query: 169 TGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKN---PEASGNVSIENEEVYK 225
            G   +V C  CGVK+SNW   D+ M++HR   P CPFV+N    + S NVS    + ++
Sbjct: 204 LGTADKVACVNCGVKLSNWEPKDNAMSEHRRHFPNCPFVENLMRDQPSFNVSNVTMQTHE 263

Query: 226 LESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHK 285
               R+ TF NWP    V PE LA  GFYY+ + D VKC  C   +  WE GD+   EH 
Sbjct: 264 ---ARVKTFINWPTRIPVQPEQLADAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWIEHA 320

Query: 286 RQSPNCPFLAR 296
           +  P C +L R
Sbjct: 321 KWFPRCEYLLR 331

Apoptotic suppressor.

Gallus gallus (taxid: 9031)

>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 OS=Homo sapiens GN=BIRC3 PE=1 SV=2

 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 159/310 (51%), Gaps = 25/310 (8%)

Query: 1   MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
           ++ E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS   K
Sbjct: 26  LSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEK 85

Query: 61  HRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFY-- 118
           H+   P C FV++  +  N+   ++  +       ++  N   S +   E    +G++  
Sbjct: 86  HKKLYPSCRFVQSLNSVNNLEATSQPTFP------SSVTNSTHSLLPGTE---NSGYFRG 136

Query: 119 -----------YLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFF 167
                           D    + S     MN E +RL TFQ+WP  + +S   +AKAGF+
Sbjct: 137 SYSNSPSNPVNSRANQDFSALMRSSYHCAMNNENARLLTFQTWPL-TFLSPTDLAKAGFY 195

Query: 168 YTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNP-EASGNVSIENEEVYKL 226
           Y G    V CFACG K+SNW   D+ M++H    P CPF++N  + +   ++ N  + + 
Sbjct: 196 YIGPGDRVACFACGGKLSNWEPKDNAMSEHLRHFPKCPFIENQLQDTSRYTVSNLSM-QT 254

Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
            + R  TF NWP S +V PE LA  GFYY+   D VKC  C   +  WE GD+   +H +
Sbjct: 255 HAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWVQHAK 314

Query: 287 QSPNCPFLAR 296
             P C +L R
Sbjct: 315 WFPRCEYLIR 324

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF1, and BCL10. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q13490|BIRC2_HUMAN Baculoviral IAP repeat-containing protein 2 OS=Homo sapiens GN=BIRC2 PE=1 SV=2

 Score =  180 bits (457), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 150/300 (50%), Gaps = 14/300 (4%)

Query: 4   ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
           E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS + KH+ 
Sbjct: 46  ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQ 105

Query: 64  KDPGCPFVKN------PEASGNVS-IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTG 116
             P C F++N         S N S + N   + L      +         ++P  L    
Sbjct: 106 LYPSCSFIQNLVSASLGSTSKNTSPMRNSFAHSLSPTLEHSSLFSGSYSSLSPNPLNSRA 165

Query: 117 FYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQ 176
              +       +     S  M+ E +R  T+  WP  + +S   +A+AGF+Y G    V 
Sbjct: 166 VEDISSSRTNPY-----SYAMSTEEARFLTYHMWPL-TFLSPSELARAGFYYIGPGDRVA 219

Query: 177 CFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNN 236
           CFACG K+SNW   D  M++HR   P CPF++N   +   SI N  + +  + R+ TF  
Sbjct: 220 CFACGGKLSNWEPKDDAMSEHRRHFPNCPFLENSLETLRFSISNLSM-QTHAARMRTFMY 278

Query: 237 WPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
           WP S  V PE LA  GFYY+ + D VKC  C   +  WE GD+   EH +  P C FL R
Sbjct: 279 WPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIR 338

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling, and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF2, DIABLO/SMAC, MAP3K14/NIK, MAP3K5/ASK1, IKBKG/NEMO and MXD1/MAD1. Can also function as an E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Can stimulate the transcriptional activity of E2F1. Plays a role in the modulation of the cell cycle.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q62210|BIRC2_MOUSE Baculoviral IAP repeat-containing protein 2 OS=Mus musculus GN=Birc2 PE=1 SV=1

 Score =  176 bits (447), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 153/293 (52%), Gaps = 7/293 (2%)

Query: 4   ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
           E  R+ T+ ++P   PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS + KHR 
Sbjct: 46  ELYRMSTYSAFPRGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKQGDSPVEKHRQ 105

Query: 64  KDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQG 123
             P C FV+    S ++   ++ +  ++S R A  +      I +    +      ++  
Sbjct: 106 FYPSCSFVQTL-LSASLQSPSKNMSPVKS-RFAHSSPLERGGIHSNLCSSPLNSRAVEDF 163

Query: 124 DKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVK 183
             +    S+    M+ E +R  T+  WP  S +S   +A+AGF+Y G    V CFACG K
Sbjct: 164 SSRMDPCSY---AMSTEEARFLTYSMWPL-SFLSPAELARAGFYYIGPGDRVACFACGGK 219

Query: 184 ISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIV 243
           +SNW   D  M++HR   P CPF++N   +   SI N  + +  S RL TF  WP S  V
Sbjct: 220 LSNWEPKDDAMSEHRRHFPHCPFLENTSETQRFSISNLSM-QTHSARLRTFLYWPPSVPV 278

Query: 244 TPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
            PE LA  GFYY+ + D VKC  C   +  WE GD+   EH +  P C FL R
Sbjct: 279 QPEQLASAGFYYVDRNDDVKCFCCDGGLRCWEPGDDPWIEHAKWFPRCEFLIR 331

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling, and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF2, DIABLO/SMAC, MAP3K14/NIK, MAP3K5/ASK1, IKBKG/NEMO and MXD1/MAD1. Can also function as an E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Can stimulate the transcriptional activity of E2F1. Plays a role in the modulation of the cell cycle.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor OS=Drosophila melanogaster GN=Iap2 PE=2 SV=3

 Score =  176 bits (446), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/298 (33%), Positives = 142/298 (47%), Gaps = 56/298 (18%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
            +LES RLATF  WP++  V+ E L   GF+      + +C +C V I RWE GD     
Sbjct: 6   MELESVRLATFGEWPLNAPVSAEDLVANGFFATGNWLEAECHFCHVRIDRWEYGDQVAER 65

Query: 284 HKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLESG 343
           H+R SP C  +   N          R+ ++ + G   V +PE+     +       LE+ 
Sbjct: 66  HRRSSPICSMVLAPNHCGNVP----RSQESDNEGNSVVDSPESCSCPDL------LLEAN 115

Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGD----------------------------- 374
           RL TF +WP   I TP+ALAK GFYYL + D                             
Sbjct: 116 RLVTFKDWPNPNI-TPQALAKAGFYYLNRLDHVKCVWCNGVIAKWEKNDNAFEEHKRFFP 174

Query: 375 ----------------KDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLA 418
                           K++ +LG+Q   +P  P  + +D+R+ TFT WP  +     +LA
Sbjct: 175 QCPRVQMGPLIEFATGKNLDELGIQPTTLPLRPKYACVDARLRTFTDWPISNIQPASALA 234

Query: 419 VAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTI 476
            AG +Y   GD VRCFHC+ GLR W   DEPW EHA+W P+C FV+L KG  ++ + +
Sbjct: 235 QAGLYYQKIGDQVRCFHCNIGLRSWQKEDEPWFEHAKWSPKCQFVLLAKGPAYVSEVL 292

Anti-apoptotic protein with E3 ubiquitin-protein ligase activity which is essential for the activation of NF-kappaB transcription factors in the immune deficiency (Imd) signaling cascade which is essential for innate immune responses upon infection by Gram-negative bacteria. Functions as a caspase regulator, by using its E3 ubiquitin-protein ligase activity to smother caspase activity. Binds, ubiquitinates and inactivates the effector caspase ICE. Overexpression suppresses RPR and HID-dependent cell death in the eye.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	557
242005705	430	Baculoviral IAP repeat-containing protei	0.642	0.832	0.380	2e-87
350419057	523	PREDICTED: apoptosis 2 inhibitor-like [B	0.515	0.548	0.363	7e-64
340708908	523	PREDICTED: baculoviral IAP repeat-contai	0.515	0.548	0.360	1e-63
383864961	549	PREDICTED: baculoviral IAP repeat-contai	0.506	0.513	0.360	1e-61
66529835	518	PREDICTED: baculoviral IAP repeat-contai	0.515	0.554	0.335	3e-60
345487735	561	PREDICTED: baculoviral IAP repeat-contai	0.536	0.532	0.361	5e-60
148228259	604	baculoviral IAP repeat containing 2 [Xen	0.944	0.870	0.299	6e-60
91077722	494	PREDICTED: similar to inhibitor of apopt	0.488	0.550	0.374	6e-59
307208193	535	Apoptosis 2 inhibitor [Harpegnathos salt	0.549	0.571	0.338	1e-56
357626318	505	inhibitor of apoptosis [Danaus plexippus	0.490	0.540	0.370	1e-54

>gi|242005705|ref|XP_002423703.1| Baculoviral IAP repeat-containing protein, putative [Pediculus humanus corporis] gi|212506879|gb|EEB10965.1| Baculoviral IAP repeat-containing protein, putative [Pediculus humanus corporis]

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/491 (38%), Positives = 240/491 (48%), Gaps = 133/491 (27%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           MN E  RL TF+ WP N+ V   RIA+AGF++TG    V CF+CG  IS+W Y D VM +
Sbjct: 1   MNVEEQRLNTFRDWPGNAAVEPSRIAQAGFYFTGPGLNVTCFSCGCNISDWNYGDQVMTR 60

Query: 197 HRAKDPGCPFVKNPEASGNVSI---------------------------ENEEVYKLESG 229
           HR   P C FV++P  SGNV +                               +YK ES 
Sbjct: 61  HRNLSPNCAFVRDPVNSGNVPLTINRNNQQSQARTTLNSTERNLIGAWESQSSIYKRESA 120

Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSP 289
           RL +F+NWP+ FIVTPEALA+TGFY+L +GD V+CA+C+ I  RWE GD  E+EH+R  P
Sbjct: 121 RLDSFSNWPIPFIVTPEALAETGFYFLHKGDAVQCAFCNGIACRWEVGDIPEAEHRRHFP 180

Query: 290 NCPFLARDNQATQANMINLRALDA-KDPGCPFVKNPEASGNVSIENEEVYKLESGRLATF 348
           +CPFL   +         L ALD  ++ G    + P+            +     RL TF
Sbjct: 181 DCPFLLGQSVGNVPKRERLFALDNFEELGIQRHRGPK---------NPKFSTADSRLRTF 231

Query: 349 NNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPR 408
            NWP +    P  LA+ GF+Y+ + D DM                               
Sbjct: 232 ENWPSNLTQQPNVLAQAGFFYVGRQDPDM------------------------------- 260

Query: 409 DSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKG 468
                                 VRCFHCDGGLR W   DEPWSEHARWFP C F++LVKG
Sbjct: 261 ----------------------VRCFHCDGGLRHWAPEDEPWSEHARWFPNCPFLLLVKG 298

Query: 469 EQFIEDTIK-----------------ANPPITD------------------------EVF 487
           ++++    +                 +NP +                          +V 
Sbjct: 299 QEYVNQIQRLYNNSDNQFKSTSEPGTSNPDVKSSGLQGSLSVSMPSLSNSLVQEEEGKVL 358

Query: 488 FTPKFFVK--SLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCR 545
              +  ++  +L+EE RRL+EAR CKICMD EVG VLLPCGHLV CV CA +L  CPVCR
Sbjct: 359 TRTQSVLENIALKEENRRLKEARQCKICMDSEVGAVLLPCGHLVACVDCAPNLKDCPVCR 418

Query: 546 ENIKATVRTFL 556
           + IKATVRTF 
Sbjct: 419 QQIKATVRTFF 429

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419057|ref|XP_003492056.1| PREDICTED: apoptosis 2 inhibitor-like [Bombus impatiens]

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 142/391 (36%), Positives = 187/391 (47%), Gaps = 104/391 (26%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           MN E SRLRTF  WP N+ V + RIAKAGF+YTGH  EVQCF CGVKIS+W Y D  + +
Sbjct: 1   MNVEESRLRTFTDWPVNATVDAARIAKAGFYYTGHALEVQCFLCGVKISDWNYGDQAIVR 60

Query: 197 HRAKDPGCPFVKNPEASGNVSI--------------------------------ENEEVY 224
           HR  +P CPFV+NP ++ NV +                                +N+E  
Sbjct: 61  HRLAEPNCPFVQNPSSTCNVPLIPIPINNLGLASSSTETSQDNNIVECQSINPYQNKEPQ 120

Query: 225 K---LESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAE 281
           K   + S RL +F NWP+S IV+PE LAK GFYYL+  D+V+C YC  I+ +W+ GD+ E
Sbjct: 121 KECRVMSQRLQSFTNWPISSIVSPEKLAKAGFYYLQHDDEVQCTYCGGILRKWKLGDDPE 180

Query: 282 SEHKRQSPNCPFLARDNQATQANMINLRAL-----DAKDPGCPFVKNPEASGNVSIENEE 336
            +H+   PNC F A  ++     + N++ +     +  D G      P+     + E   
Sbjct: 181 RKHREYFPNCNFYAHQDKDDNLYLTNVKLMPGATSNLSDLGIQIHTTPKKPDCATYE--- 237

Query: 337 VYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTL 396
                 GRL TFN WP +   TPE LA  GFYY   GD                      
Sbjct: 238 ------GRLRTFNGWPENIKQTPEILASAGFYYDGFGDH--------------------- 270

Query: 397 DSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARW 456
                                 V  F  DG            GLR W A D+ W+EHARW
Sbjct: 271 ----------------------VRCFHCDG------------GLRNWEATDDAWTEHARW 296

Query: 457 FPECHFVMLVKGEQFIEDTIKANPPITDEVF 487
           FP+C FV LV+G++FI+  I   PP+   +F
Sbjct: 297 FPKCEFVNLVRGQEFIKQCINNRPPLDQSIF 327

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708908|ref|XP_003393059.1| PREDICTED: baculoviral IAP repeat-containing protein 3-like [Bombus terrestris]

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 186/391 (47%), Gaps = 104/391 (26%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           MN E SRLRTF  WP N+ V + RIAKAGF+YTGH  EVQCF CGVKIS+W Y D  + +
Sbjct: 1   MNVEESRLRTFTDWPVNATVDAARIAKAGFYYTGHALEVQCFLCGVKISDWNYGDQAIVR 60

Query: 197 HRAKDPGCPFVKNPEASGNVSI--------------------------------ENEEVY 224
           HR  +P CPFV+NP ++ NV +                                +N+E  
Sbjct: 61  HRLAEPNCPFVQNPSSTCNVPLIPIPINNLGLASSSTETSQDNNIVECQSINLYQNKEPQ 120

Query: 225 K---LESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAE 281
           K   + S RL +F NWP+S IV+PE LAK GFYYL+  D+V+C YC  I+ +W+ GD+ E
Sbjct: 121 KECRVMSQRLQSFTNWPISSIVSPEKLAKAGFYYLQHDDEVQCTYCGGILRKWKLGDDPE 180

Query: 282 SEHKRQSPNCPFLARDNQATQANMINLRAL-----DAKDPGCPFVKNPEASGNVSIENEE 336
            +H+   PNC F    ++     + N++ +     +  D G      P+     + E   
Sbjct: 181 RKHREYFPNCNFYVHQDKDDNLYLTNVKLMPGATSNLSDLGIQIHTTPKKPDCATYE--- 237

Query: 337 VYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTL 396
                 GRL TFN WP +   TPE LA  GFYY   GD                      
Sbjct: 238 ------GRLRTFNGWPENIKQTPEILASAGFYYDGFGDH--------------------- 270

Query: 397 DSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARW 456
                                 V  F  DG            GLR W A D+ W+EHARW
Sbjct: 271 ----------------------VRCFHCDG------------GLRNWEATDDAWTEHARW 296

Query: 457 FPECHFVMLVKGEQFIEDTIKANPPITDEVF 487
           FP+C FV LV+G++FI+  I   PP+   +F
Sbjct: 297 FPKCEFVNLVRGQEFIKQCINNRPPLDQSIF 327

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864961|ref|XP_003707946.1| PREDICTED: baculoviral IAP repeat-containing protein 3-like [Megachile rotundata]

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/386 (36%), Positives = 183/386 (47%), Gaps = 104/386 (26%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           MN E +RLRTF  WP+N+ V + RIAKAGF+Y+G   EVQCF CGVKIS+W Y D  M +
Sbjct: 1   MNVEENRLRTFTDWPTNAAVDAARIAKAGFYYSGRGLEVQCFLCGVKISDWNYGDQAMVR 60

Query: 197 HRAKDPGCPFVKNPEASGNV-----------------------------------SIENE 221
           HR  +P CPFV+NP  + NV                                   S + +
Sbjct: 61  HRLAEPSCPFVQNPTNTCNVPLVPISANNSGLASSSADALQDNNINELQSVNFNRSSKPQ 120

Query: 222 EVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAE 281
           + YK  S RL TFNNWP+S I++PE LAK GFYYL++ D V+C YC  I+ +WE GD+ +
Sbjct: 121 KQYKTMSQRLQTFNNWPISSIISPEKLAKAGFYYLQREDMVECVYCGGILQKWELGDDPD 180

Query: 282 SEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLE 341
            EH    P C F    ++  Q  +  +R L  +    P  K P         N   Y+  
Sbjct: 181 KEHIINFPKCDFYMHQDEDDQLGISLIRELGIQTHTAP--KKP---------NHATYE-- 227

Query: 342 SGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVL 401
            GRL+TF  WP +   TPE L+  GFYY   GD                           
Sbjct: 228 -GRLSTFIGWPENLKQTPEMLSSAGFYYDGFGDH-------------------------- 260

Query: 402 TFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECH 461
                            V  F  DG            GLR W   D+ W+EHA+WFP+C 
Sbjct: 261 -----------------VRCFHCDG------------GLRDWETTDDAWTEHAKWFPKCE 291

Query: 462 FVMLVKGEQFIEDTIKANPPITDEVF 487
           FV LV+G++FI+  I + PP+   +F
Sbjct: 292 FVNLVRGQEFIKQCINSRPPLDPSIF 317

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66529835|ref|XP_396819.2| PREDICTED: baculoviral IAP repeat-containing protein 4 [Apis mellifera]

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 187/388 (48%), Gaps = 101/388 (26%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           MN E++RL+TF  WP+N+ V + RIAKAGF+Y+GH  EVQCF CGVKIS+W Y D  + +
Sbjct: 1   MNIEKNRLQTFTDWPANAAVDAVRIAKAGFYYSGHGLEVQCFLCGVKISDWNYGDQAIVR 60

Query: 197 HRAKDPGCPFVKNPEASGNVSI--------------------------------ENEEVY 224
           HR  +P C FV+NP ++ N+ +                                E+++ Y
Sbjct: 61  HRLAEPNCSFVQNPSSTCNIPLIPINNNELPSSSTEISQNNIIEYQSTNSYQYKESQKKY 120

Query: 225 KLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEH 284
           ++ S RL +F NWP+S ++ PE LAK GFYYL++ D+V+C YC  I+ +WE GD+   +H
Sbjct: 121 RIMSHRLQSFTNWPLSSVILPENLAKAGFYYLQRDDEVQCIYCGGILKKWELGDDPNKKH 180

Query: 285 KRQSPNCPFLARDNQATQANMINLRAL-----DAKDPGCPFVKNPEASGNVSIENEEVYK 339
           ++  P+C F    ++     + N++ +     +  D G      P+     + E      
Sbjct: 181 RKYFPDCNFYVYQDKDDNLYLSNVKLISGPTSNLSDLGIQTHTTPKKQDCATYE------ 234

Query: 340 LESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSR 399
              GRL TFN WP +   TPE LA  GFYY           G  +H              
Sbjct: 235 ---GRLHTFNGWPENIKQTPEILASAGFYY----------DGYSDH-------------- 267

Query: 400 VLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPE 459
                              V  F  DG            GLR W   D+ W EHA+WFP+
Sbjct: 268 -------------------VRCFHCDG------------GLRNWETTDDAWIEHAKWFPK 296

Query: 460 CHFVMLVKGEQFIEDTIKANPPITDEVF 487
           C FV LV+G++FI+  I   PP+   +F
Sbjct: 297 CEFVNLVRGQEFIKQCINNRPPLDQSIF 324

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487735|ref|XP_001606042.2| PREDICTED: baculoviral IAP repeat-containing protein 3-like [Nasonia vitripennis]

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 140/387 (36%), Positives = 182/387 (47%), Gaps = 88/387 (22%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           MN+E +RLRTF  WP+N PVS+ RIAKAGF+YTG     QCF CG ++S W + D  MA 
Sbjct: 1   MNYEVNRLRTFLDWPANCPVSTARIAKAGFYYTGTAQIAQCFLCGTRVSEWNFGDQAMAL 60

Query: 197 HRAKDPGCPFVKNPEASGNVSI------------------ENEE-----VYKLE------ 227
           HR  +P CPFV +P A+ NV +                  EN E     V +LE      
Sbjct: 61  HRIANPECPFVLDPIATCNVPLILMADESINPNSIDNNHNENSESSAGGVTQLENAITDL 120

Query: 228 ---SGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEH 284
              S RL TF NWP+  IV+PE LA++GFYYL+Q D V+CAYC  +I +WE GD+ + EH
Sbjct: 121 ARYSHRLNTFRNWPIPAIVSPERLARSGFYYLQQADMVECAYCQGVILKWEPGDDPDREH 180

Query: 285 KRQSPNCPFLARDNQATQANMINLRALDAK-DPGCPFVKNPEASGNVSIENEEVYKLESG 343
           +   PNC F  RD  A   +   +   + K  PG           + S   +  +    G
Sbjct: 181 RIHFPNCDFYMRDGAAYDVSAEKVELGNVKLMPGTTSNFTELGIQHHSAPRQPKHATYEG 240

Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTF 403
           RL TF  WP +   TPE LA  GFYY+   D+                            
Sbjct: 241 RLRTFQGWPSNLRQTPEMLADAGFYYVGAQDQ---------------------------- 272

Query: 404 TTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFV 463
                          V  F  DG            GLR W   D+ W EHARWFP+C +V
Sbjct: 273 ---------------VRCFHCDG------------GLRNWEETDDAWIEHARWFPKCGYV 305

Query: 464 MLVKGEQFIEDTIKANPPITDEVFFTP 490
            LV+G+ FI+  I+  PP+   +   P
Sbjct: 306 ALVRGQDFIKHCIEHRPPLDPAILGVP 332

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148228259|ref|NP_001086733.1| baculoviral IAP repeat containing 2 [Xenopus laevis] gi|50417488|gb|AAH77368.1| Birc2-prov protein [Xenopus laevis]

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 180/601 (29%), Positives = 277/601 (46%), Gaps = 75/601 (12%)

Query: 4   ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
           E  RL TF ++P+N+ VS + +AKAGF+YTG   +V+CF CG+ + NW   D+   KH+ 
Sbjct: 32  ELYRLSTFCTFPTNTQVSERNLAKAGFYYTGSDDKVKCFTCGLMLDNWKKGDNAFEKHKK 91

Query: 64  KDPGCPFVKN-PEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQ 122
             P C F++N P  +   S+             + F+  P +   TP + A +    ++ 
Sbjct: 92  LYPSCSFIQNVPPVNLGASLH------------SAFS--PPASNSTPMSSAASENDKVEA 137

Query: 123 GDKKYFLI-----SFRSIT----------MNFERSRLRTFQSWPSNSPVSSKRIAKAGFF 167
              KY  I     +FR I           M  E +RL +F+ W +N+ ++   +AKAGF+
Sbjct: 138 ISMKYCSIPQNPVTFRGIEDLSHIRTSEYMYTEEARLNSFKEW-TNAFLTPPELAKAGFY 196

Query: 168 YTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVK-NPEASGNVSIENEEVYKL 226
           + G   +V CF C  K+SNW  ND+ M++HR   P CPFVK +   S   S+ N  + + 
Sbjct: 197 FVGPGDKVACFTCDGKLSNWEPNDNAMSEHRRHFPDCPFVKTSTRVSSRFSVSNVSM-QA 255

Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
            S RL TF +WP    V+P  LA+ GFYY+ + D VKC  C   +  WE GD+   EH +
Sbjct: 256 SSARLKTFVSWPPRIPVSPTQLAEAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAK 315

Query: 287 QSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSI--------ENEEVY 338
             P C +L           +  R     D      +N   + N  I        + +E+ 
Sbjct: 316 WFPRCEYLLNVRGQDFVREVQERHPHLLDQLLSSSENQNEAKNTPIIRLGTENSQEDEIM 375

Query: 339 ----KLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNL- 393
                +++     FN   V   +  + L  +G  Y++  D     L  Q  +  +  N  
Sbjct: 376 MSTPMVQTALEMGFNRRLVKRTIQSKILT-SGENYIQLDDLISDLLSAQEEQTEEERNRQ 434

Query: 394 ----STLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEP 449
               S  D  V+  +       +  +S+ +  +      D     + D  ++    +   
Sbjct: 435 AEENSMDDISVIRKSRMALSQHIASRSIPILDYLL-SSNDITTAEYEDIKVKTQPIL--- 490

Query: 450 WSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLE----------- 498
               A+   E    ++ KG+  ++ T+K      D   F   F  +SL+           
Sbjct: 491 ---QAQEMIE---TIITKGKTAVQ-TLKNCLQKHDPNLFRQLFTEQSLKCISLDDCSDLS 543

Query: 499 --EEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFL 556
             E++RRL+E R CKICMD+EV +V +PCGHLV C  CA SL +CP+CR  IK TVRTFL
Sbjct: 544 MEEQLRRLQEERTCKICMDQEVSIVFIPCGHLVVCKDCAPSLRKCPICRGTIKGTVRTFL 603

Query: 557 S 557
           S
Sbjct: 604 S 604

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91077722|ref|XP_975027.1| PREDICTED: similar to inhibitor of apoptosis 2 protein [Tribolium castaneum] gi|270002839|gb|EEZ99286.1| hypothetical protein TcasGA2_TC001189 [Tribolium castaneum] gi|353334516|gb|AEQ93553.1| inhibitor of apoptosis 2 protein [Tribolium castaneum]

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 174/358 (48%), Gaps = 86/358 (24%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           MN E++RL TF+ WP ++ VS  RIAKAGFFYT H   V+CF+C + IS W Y D VMAK
Sbjct: 1   MNVEQNRLDTFEEWPQDAAVSPPRIAKAGFFYTKHDVTVECFSCHLTISEWNYGDQVMAK 60

Query: 197 HRAKDPGCPFVKNPEASGNVSI-------ENEEVYKLESGRLATFNNWPVSFIVTPEALA 249
           H+  +P CPFV NP  SGNV I          +  K E+ RL TF  WP   IV PE LA
Sbjct: 61  HKTLNPSCPFVLNPTTSGNVPIISPTNVPSTSDSMKDEAVRLKTFAKWPKPHIVAPERLA 120

Query: 250 KTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLA-----RDNQATQAN 304
           + GFYYL  GD  KCA+C  ++  WE GD+ + EHKR   +CPF+      R +Q T   
Sbjct: 121 RAGFYYLNTGDNTKCAFCKGVVRAWEPGDDPDQEHKRHFEDCPFVLTEIVPRLSQNTNGQ 180

Query: 305 M-------INLRALDAKDPGCPFV---KNPEASGNVSIENEEVYKLESGRLATFNNWPVS 354
           +        NL  +  ++  C  V   K P+     ++E+         RL +F  WP  
Sbjct: 181 VKTDSSSFTNLHLVANENLHCLGVQTHKGPKKPNYATLES---------RLRSFATWPPD 231

Query: 355 FIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGP 414
            I TP+ L++ GFYY   GD+                                       
Sbjct: 232 LIQTPDILSQAGFYYEGMGDQ--------------------------------------- 252

Query: 415 QSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFI 472
               V  F  DG            GLR W   D+PW+EHARWFP C F+ LVKG++F+
Sbjct: 253 ----VRCFHCDG------------GLRHWDPQDDPWTEHARWFPRCSFIKLVKGQEFV 294

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208193|gb|EFN85667.1| Apoptosis 2 inhibitor [Harpegnathos saltator]

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 185/417 (44%), Gaps = 111/417 (26%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           MN E +RL+TF+ WP N+ V + RIAKAGF+YTGH  EVQCF CG  +S+W Y D  MA+
Sbjct: 1   MNVEENRLKTFEEWPVNAAVDAPRIAKAGFYYTGHSLEVQCFLCGTTVSDWNYGDQAMAR 60

Query: 197 HRAKDPGCPFVKNPE---------ASGNVSIENE-------------------EV----- 223
           HR   P CPFV N           AS +VSIE+                    EV     
Sbjct: 61  HRQAQPACPFVVNSADTCNVPLIPASASVSIESSVTSSLPVTRQSNVIKGNLGEVQETAV 120

Query: 224 --------YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWE 275
                   Y   S RL +F NWP+S +V+PE LAK+GFYYL+  D V+C YC  ++ +WE
Sbjct: 121 RSTNPLRDYGTTSQRLRSFVNWPISSVVSPEQLAKSGFYYLQFSDLVECIYCGGVLTKWE 180

Query: 276 QGDNAESEHKRQSPNCPFLAR----DNQATQAN--MINLRALDAKDPGCPFVKNPEASGN 329
            GD+ +SEH+   PNC F  R    D     AN  +++       + G      P    N
Sbjct: 181 AGDDPDSEHRLHFPNCDFYMRYETEDEALELANVTLVSGATTGITELGIQVHTAPSNPKN 240

Query: 330 VSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPK 389
            + E          RL TF  WP     TPE L+  GFYY    D+              
Sbjct: 241 TTYEE---------RLRTFVGWPTDHKQTPEMLSAAGFYYTGTQDQ-------------- 277

Query: 390 HPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEP 449
                                        V  F  DG            GLR W   D+ 
Sbjct: 278 -----------------------------VRCFHCDG------------GLRNWEPKDDV 296

Query: 450 WSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLRE 506
           WSEHARWFP C FV LV+G++F++  I + PP+  +        V  ++  ++R  E
Sbjct: 297 WSEHARWFPTCTFVNLVRGQEFVKHCIDSRPPLDPKSALEIGLSVDRVKRTLKRKME 353

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626318|gb|EHJ76448.1| inhibitor of apoptosis [Danaus plexippus]

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 174/335 (51%), Gaps = 62/335 (18%)

Query: 225 KLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEH 284
           + E  R+ TF NWPV F+ +PE LA+ GFYYLK+GD+V+CA+C V I +W  GD+  ++H
Sbjct: 151 RREDERIKTFENWPVPFL-SPELLARNGFYYLKRGDEVRCAFCKVEIMKWMVGDDPATDH 209

Query: 285 KRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLESGR 344
           +R +P CPF                           ++   ASGNV IE+        GR
Sbjct: 210 QRWAPQCPF---------------------------LRRQAASGNVPIED-------GGR 235

Query: 345 LATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFT 404
                              + G +        +R  G      PKHP+ S+ D+R+ TF+
Sbjct: 236 ------------------DECGVHVPPPAPTPVRMPG------PKHPHYSSEDARLRTFS 271

Query: 405 TWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVM 464
            WPR     P+ LA AGFFY GQGD  +CF CDGGL+ W   D PW +HARWF  C +V 
Sbjct: 272 DWPRSMRQKPEELAEAGFFYTGQGDKTKCFFCDGGLKDWENDDVPWEQHARWFSRCAYVQ 331

Query: 465 LVKGEQFIEDTIKANPPI--TDEVFFTPKFFVKSLEEEVRRLREARLCKICMDKEVGVVL 522
           LVKG ++IE  I        T +    PK   K+ +++ R   +++LCKIC ++E+ +  
Sbjct: 332 LVKGREYIEKVIAQAEAENGTHKEDADPKVETKT-KDKPRSEDDSKLCKICYNEELNICF 390

Query: 523 LPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
           +PCGH+V C  CA S  +CP+CR      VR + S
Sbjct: 391 VPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYFS 425

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	557
UNIPROTKB|Q13489	604	BIRC3 "Baculoviral IAP repeat-	0.526	0.485	0.341	1.7e-67
UNIPROTKB|Q5XIW4	602	Birc3 "Protein Birc3" [Rattus	0.518	0.480	0.366	1.1e-66
RGD|621282	602	Birc3 "baculoviral IAP repeat-	0.518	0.480	0.366	3.7e-66
UNIPROTKB|F1PT73	617	BIRC2 "Uncharacterized protein	0.509	0.460	0.337	2.1e-65
MGI|MGI:1197007	600	Birc3 "baculoviral IAP repeat-	0.513	0.476	0.359	3.3e-65
RGD|620690	589	Birc2 "baculoviral IAP repeat-	0.509	0.482	0.366	2.3e-64
UNIPROTKB|F1M6X6	592	Birc2 "Protein Birc2" [Rattus	0.509	0.479	0.366	3.7e-64
UNIPROTKB|E9PMH5	597	BIRC2 "Baculoviral IAP repeat-	0.522	0.487	0.352	7.7e-64
UNIPROTKB|Q13490	618	BIRC2 "Baculoviral IAP repeat-	0.522	0.470	0.352	7.7e-64
UNIPROTKB|Q90660	611	ITA "Inhibitor of apoptosis pr	0.518	0.472	0.346	2e-63

UNIPROTKB|Q13489 BIRC3 "Baculoviral IAP repeat-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 477 (173.0 bits), Expect = 1.7e-67, Sum P(3) = 1.7e-67
 Identities = 103/302 (34%), Positives = 156/302 (51%)

Query:     1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
             ++ E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS   K
Sbjct:    26 LSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEK 85

Query:    61 HRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS-----FIVTPEALAKT 115
             H+   P C FV++  +  N+   ++  +   S   +T +  P +     F  +       
Sbjct:    86 HKKLYPSCRFVQSLNSVNNLEATSQPTFP-SSVTNSTHSLLPGTENSGYFRGSYSNSPSN 144

Query:   116 GFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEV 175
                     D    + S     MN E +RL TFQ+WP    +S   +AKAGF+Y G    V
Sbjct:   145 PVNSRANQDFSALMRSSYHCAMNNENARLLTFQTWPLTF-LSPTDLAKAGFYYIGPGDRV 203

Query:   176 QCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNP-EASGNVSIENEEVYKLESGRLATF 234
              CFACG K+SNW   D+ M++H    P CPF++N  + +   ++ N  + +  + R  TF
Sbjct:   204 ACFACGGKLSNWEPKDNAMSEHLRHFPKCPFIENQLQDTSRYTVSNLSM-QTHAARFKTF 262

Query:   235 NNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFL 294
              NWP S +V PE LA  GFYY+   D VKC  C   +  WE GD+   +H +  P C +L
Sbjct:   263 FNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWVQHAKWFPRCEYL 322

Query:   295 AR 296
              R
Sbjct:   323 IR 324

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0060546 "negative regulation of necroptosis" evidence=IEA

GO:0070266 "necroptosis" evidence=IEA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0038061 "NIK/NF-kappaB cascade" evidence=TAS

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS

GO:0045088 "regulation of innate immune response" evidence=TAS

GO:0050727 "regulation of inflammatory response" evidence=TAS

GO:0070424 "regulation of nucleotide-binding oligomerization domain containing signaling pathway" evidence=TAS

GO:0039535 "regulation of RIG-I signaling pathway" evidence=TAS

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=TAS

GO:2000116 "regulation of cysteine-type endopeptidase activity" evidence=TAS

GO:0007166 "cell surface receptor signaling pathway" evidence=TAS

GO:0043066 "negative regulation of apoptotic process" evidence=TAS

UNIPROTKB|Q5XIW4 Birc3 "Protein Birc3" [Rattus norvegicus (taxid:10116)]

 Score = 506 (183.2 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 110/300 (36%), Positives = 161/300 (53%)

Query:     4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
             E  RL T+ ++P+  PVS + +A+AGF+YTG   +V+CF+CG+ + NW   DS + KHR 
Sbjct:    29 ELYRLSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFSCGLMLDNWKQGDSPIEKHRK 88

Query:    64 KDPGCPFVK--NP----EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGF 117
               P C FV+  NP    EAS    + +     + SG  A+ +     F  +  +      
Sbjct:    89 LYPSCSFVQTLNPANSLEASPQPPLPSTATSTMPSGFAASESTG--YFSGSYSSFPSDPV 146

Query:   118 YYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQC 177
              +    D   F  S     MN E++RL T+Q+WP  S +S   +AKAGF+YTG    V C
Sbjct:   147 NFRANQDCPAFSTSPYHFAMNTEKARLLTYQTWPL-SFLSPAELAKAGFYYTGPGDRVAC 205

Query:   178 FACGVKISNWTYNDSVMAKHRAKDPGCPFVKNP-EASGNVSIENEEVYKLESGRLATFNN 236
             FACG K+SNW   D  +++HR   P CPF+K+  + +   ++ N  + +  + R+ TF+ 
Sbjct:   206 FACGGKLSNWDRKDDPLSEHRRHFPSCPFLKDVGQFTSQYTVSNLSM-QTHAARVRTFST 264

Query:   237 WPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
             WP S +V P+ LA  GFYY    D VKC  C   +  WE GD+   EH +  P C +L R
Sbjct:   265 WPSSALVHPQELASAGFYYTGHSDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEYLIR 324

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0060546 "negative regulation of necroptosis" evidence=IEA

GO:0070266 "necroptosis" evidence=IEA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IEA

RGD|621282 Birc3 "baculoviral IAP repeat-containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 505 (182.8 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 110/300 (36%), Positives = 160/300 (53%)

Query:     4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
             E  RL T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS + KHR 
Sbjct:    29 ELYRLSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKQGDSPIEKHRK 88

Query:    64 KDPGCPFVK--NP----EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGF 117
               P C FV+  NP    EAS    + +     + SG  A+ +     F  +  +      
Sbjct:    89 LYPSCSFVQTLNPANSLEASPQPPLPSTATSTMPSGFAASESTG--YFSGSYSSFPSDPV 146

Query:   118 YYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQC 177
              +    D   F  S     MN E++RL T+Q+WP  S +S   +AKAGF+YTG    V C
Sbjct:   147 NFRANQDCPAFSTSPYHFAMNTEKARLLTYQTWPL-SFLSPAELAKAGFYYTGPGDRVAC 205

Query:   178 FACGVKISNWTYNDSVMAKHRAKDPGCPFVKNP-EASGNVSIENEEVYKLESGRLATFNN 236
             FACG K+SNW   D  +++HR   P CPF+K+  + +   ++ N  + +  + R+ TF+ 
Sbjct:   206 FACGGKLSNWDRKDDPLSEHRRHFPSCPFLKDVGQFTSQYTVSNLSM-QTHAARVRTFST 264

Query:   237 WPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
             WP S +V P+ LA  GFYY    D VKC  C   +  WE GD+   EH +  P C +L R
Sbjct:   265 WPSSALVHPQELASAGFYYTGHSDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEYLIR 324

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0007283 "spermatogenesis" evidence=IEP

GO:0042326 "negative regulation of phosphorylation" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=NAS

GO:0043234 "protein complex" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IPI

GO:0060546 "negative regulation of necroptosis" evidence=ISO

GO:0070266 "necroptosis" evidence=ISO

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|F1PT73 BIRC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 459 (166.6 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
 Identities = 102/302 (33%), Positives = 153/302 (50%)

Query:     4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
             E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   D+ + KH+ 
Sbjct:    45 ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKPGDNPVEKHKQ 104

Query:    64 KDPGCPFVKN-------PEASGNVS-IENEEVYKLESG-RLATFNNWPVSFIVTPEALAK 114
               P C F+ +          S N+S + N   + +       +F+    +    P + ++
Sbjct:   105 LYPSCSFIHSLVSLTSRDSTSKNISAMRNSFTHSISPTLEHGSFSGSHSNLAANPVS-SR 163

Query:   115 TGFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHE 174
              G  +       Y      S  M+ E +R  T+  WP    +S   +A+AGF+Y G   +
Sbjct:   164 AGEDFSPLSTNPY------SYAMSTEEARFLTYHMWPLTF-LSPSDLARAGFYYIGPGDK 216

Query:   175 VQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATF 234
             V CFACG  +SNW   D  M++HR   P CPF++N   +   SI N  + +  + RL TF
Sbjct:   217 VACFACGGTLSNWEPKDDAMSEHRRHFPNCPFLENSLETLRFSISNLSM-QTHAARLRTF 275

Query:   235 NNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFL 294
               WP S  V PE LA  GFYY+ + D VKC  C   +  WE GD+   EH +  P C FL
Sbjct:   276 VYWPSSVPVRPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFL 335

Query:   295 AR 296
              R
Sbjct:   336 IR 337

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:1197007 Birc3 "baculoviral IAP repeat-containing 3" [Mus musculus (taxid:10090)]

 Score = 491 (177.9 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
 Identities = 109/303 (35%), Positives = 159/303 (52%)

Query:     4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
             E  RL T+ ++P   PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS M KHR 
Sbjct:    27 ELYRLSTYSAFPRGVPVSERSLARAGFYYTGANDKVKCFCCGLMLDNWKQGDSPMEKHRK 86

Query:    64 KDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQG 123
               P C FV+    +   S+E      L S  ++T    P+SF  +      +G Y     
Sbjct:    87 LYPSCNFVQTLNPAN--SLEASPRPSLPSTAMSTM---PLSFASSENTGYFSGSYSSFPS 141

Query:   124 DKKYFLI---------SFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHE 174
             D   F           S     MN E++RL T+++WP  S +S  ++AKAGF+Y G    
Sbjct:   142 DPVNFRANQDCPALSTSPYHFAMNTEKARLLTYETWPL-SFLSPAKLAKAGFYYIGPGDR 200

Query:   175 VQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKN-PEASGNVSIENEEVYKLESGRLAT 233
             V CFAC  K+SNW   D  M++H+   P CPF+K+  +++   ++ N  + +  + R+ T
Sbjct:   201 VACFACDGKLSNWERKDDAMSEHQRHFPSCPFLKDLGQSASRYTVSNLSM-QTHAARIRT 259

Query:   234 FNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPF 293
             F+NWP S +V  + LA  GFYY    D VKC  C   +  WE GD+   EH +  P C +
Sbjct:   260 FSNWPSSALVHSQELASAGFYYTGHSDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEY 319

Query:   294 LAR 296
             L R
Sbjct:   320 LLR 322

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0060546 "negative regulation of necroptosis" evidence=IMP

GO:0070266 "necroptosis" evidence=IDA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IMP

RGD|620690 Birc2 "baculoviral IAP repeat-containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 483 (175.1 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
 Identities = 108/295 (36%), Positives = 154/295 (52%)

Query:     4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
             E  R+ T+ ++P   PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS   KHR 
Sbjct:    25 ELYRMSTYSAFPRGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKQGDSPTEKHRQ 84

Query:    64 KDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQG 123
               P C FV+    SG +    +     +S R A  ++ P+       +L       L   
Sbjct:    85 FYPSCSFVQTL-LSGGLQSAAKNTSPAKS-RFA--HSLPLEQGGIHSSLPSNP---LNSR 137

Query:   124 DKKYFLISFR--SITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACG 181
               + F +     S  M+ E +R  ++  WP  S +S   +AKAGF+YTG    V CFACG
Sbjct:   138 AVEDFSLRMNPCSYAMSTEEARFLSYSMWPL-SFLSPAELAKAGFYYTGPGDRVACFACG 196

Query:   182 VKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSF 241
              K+SNW  ND  +++HR   P CPF++N   +   S+ N  + +  S R++TF  WP S 
Sbjct:   197 GKLSNWEPNDDPLSEHRRHFPHCPFLENTSETQRFSVSNLSM-QTHSARMSTFLYWPSSV 255

Query:   242 IVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
             +V PE LA  GFYY+   D VKC  C   +  WE GD+   EH +  P C FL R
Sbjct:   256 LVQPEQLASAGFYYVDHNDDVKCFCCDGGLRCWEPGDDPWIEHAKWFPRCEFLIR 310

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0001666 "response to hypoxia" evidence=IDA

GO:0001741 "XY body" evidence=IDA

GO:0001890 "placenta development" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0009898 "internal side of plasma membrane" evidence=ISO

GO:0010243 "response to organic nitrogen" evidence=IEP

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0035631 "CD40 receptor complex" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;TAS

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043234 "protein complex" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0045471 "response to ethanol" evidence=IEP

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=IPI

GO:0051591 "response to cAMP" evidence=IEP

GO:0051726 "regulation of cell cycle" evidence=ISO

GO:0070266 "necroptosis" evidence=ISO

UNIPROTKB|F1M6X6 Birc2 "Protein Birc2" [Rattus norvegicus (taxid:10116)]

 Score = 481 (174.4 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
 Identities = 108/295 (36%), Positives = 153/295 (51%)

Query:     4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
             E  R+ T+ ++P   PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS   KHR 
Sbjct:    26 ELYRMSTYSAFPRGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKQGDSPTEKHRQ 85

Query:    64 KDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQG 123
               P C FV+    SG +    +     +S R A  ++ P+       +L       L   
Sbjct:    86 FYPSCSFVQTL-LSGGLQSAAKNTSPAKS-RFA--HSLPLEQGGIHSSLPSNP---LNSR 138

Query:   124 DKKYFLISFR--SITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACG 181
               + F +     S  M+ E +R  ++  WP  S +S   +AKAGF+YTG    V CFACG
Sbjct:   139 AVEDFSLRMNPCSYAMSTEEARFLSYSMWPL-SFLSPAELAKAGFYYTGPGDRVACFACG 197

Query:   182 VKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSF 241
              K+SNW  ND  +++HR   P CPF++N   +   S+ N  + +  S R+ TF  WP S 
Sbjct:   198 GKLSNWEPNDDPLSEHRRHFPHCPFLENTSETQRFSVSNLSM-QTHSARMRTFLYWPSSV 256

Query:   242 IVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
             +V PE LA  GFYY+   D VKC  C   +  WE GD+   EH +  P C FL R
Sbjct:   257 LVQPEQLASAGFYYVDHNDDVKCFCCDGGLRCWEPGDDPWIEHAKWFPRCEFLIR 311

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0001890 "placenta development" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009898 "internal side of plasma membrane" evidence=IEA

GO:0035631 "CD40 receptor complex" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0070266 "necroptosis" evidence=IEA

UNIPROTKB|E9PMH5 BIRC2 "Baculoviral IAP repeat-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 476 (172.6 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 104/295 (35%), Positives = 151/295 (51%)

Query:     4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
             E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS + KH+ 
Sbjct:    25 ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQ 84

Query:    64 KDPGCPFVKN-PEAS-GNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLK 121
               P C F++N   AS G+ S     +    +  L+        F  +  +L+        
Sbjct:    85 LYPSCSFIQNLVSASLGSTSKNTSPMRNSFAHSLSPTLEHSSLFSGSYSSLSPNPLNSRA 144

Query:   122 QGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACG 181
               D      +  S  M+ E +R  T+  WP    +S   +A+AGF+Y G    V CFACG
Sbjct:   145 VEDISSSRTNPYSYAMSTEEARFLTYHMWPLTF-LSPSELARAGFYYIGPGDRVACFACG 203

Query:   182 VKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSF 241
              K+SNW   D  M++HR   P CPF++N   +   SI N  + +  + R+ TF  WP S 
Sbjct:   204 GKLSNWEPKDDAMSEHRRHFPNCPFLENSLETLRFSISNLSM-QTHAARMRTFMYWPSSV 262

Query:   242 IVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
              V PE LA  GFYY+ + D VKC  C   +  WE GD+   EH +  P C FL R
Sbjct:   263 PVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIR 317

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001890 "placenta development" evidence=IEA

GO:0009898 "internal side of plasma membrane" evidence=IEA

GO:0035631 "CD40 receptor complex" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0070266 "necroptosis" evidence=IEA

UNIPROTKB|Q13490 BIRC2 "Baculoviral IAP repeat-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 476 (172.6 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 104/295 (35%), Positives = 151/295 (51%)

Query:     4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
             E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS + KH+ 
Sbjct:    46 ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQ 105

Query:    64 KDPGCPFVKN-PEAS-GNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLK 121
               P C F++N   AS G+ S     +    +  L+        F  +  +L+        
Sbjct:   106 LYPSCSFIQNLVSASLGSTSKNTSPMRNSFAHSLSPTLEHSSLFSGSYSSLSPNPLNSRA 165

Query:   122 QGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACG 181
               D      +  S  M+ E +R  T+  WP    +S   +A+AGF+Y G    V CFACG
Sbjct:   166 VEDISSSRTNPYSYAMSTEEARFLTYHMWPLTF-LSPSELARAGFYYIGPGDRVACFACG 224

Query:   182 VKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSF 241
              K+SNW   D  M++HR   P CPF++N   +   SI N  + +  + R+ TF  WP S 
Sbjct:   225 GKLSNWEPKDDAMSEHRRHFPNCPFLENSLETLRFSISNLSM-QTHAARMRTFMYWPSSV 283

Query:   242 IVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
              V PE LA  GFYY+ + D VKC  C   +  WE GD+   EH +  P C FL R
Sbjct:   284 PVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIR 338

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001890 "placenta development" evidence=IEA

GO:0070266 "necroptosis" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0008270 "zinc ion binding" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;TAS

GO:0045088 "regulation of innate immune response" evidence=TAS

GO:0050727 "regulation of inflammatory response" evidence=TAS

GO:0070424 "regulation of nucleotide-binding oligomerization domain containing signaling pathway" evidence=TAS

GO:0039535 "regulation of RIG-I signaling pathway" evidence=TAS

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=TAS

GO:0038061 "NIK/NF-kappaB cascade" evidence=TAS

GO:2000116 "regulation of cysteine-type endopeptidase activity" evidence=TAS

GO:0042127 "regulation of cell proliferation" evidence=TAS

GO:0045595 "regulation of cell differentiation" evidence=TAS

GO:0003713 "transcription coactivator activity" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0007166 "cell surface receptor signaling pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006921 "cellular component disassembly involved in execution phase of apoptosis" evidence=TAS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0035631 "CD40 receptor complex" evidence=ISS

UNIPROTKB|Q90660 ITA "Inhibitor of apoptosis protein" [Gallus gallus (taxid:9031)]

 Score = 470 (170.5 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
 Identities = 106/306 (34%), Positives = 159/306 (51%)

Query:     4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
             E  R+ TF ++P N PVS +R+A+AGF+YTG Q +V+CF+CG+ + NW   D+ M KH+ 
Sbjct:    30 ELYRMSTFSTFPVNVPVSERRLARAGFYYTGVQDKVKCFSCGLVLDNWQPGDNAMEKHKQ 89

Query:    64 KDPGCPFVKNPEASGNVSIENEEVYK-LESGRLA-TFNNWPVS--------FIVTPEALA 113
               P C FV+N  +  N+ +     +  L +  L+ +  +  +S        F  +  +  
Sbjct:    90 VYPSCSFVQNMLSLNNLGLSTHSAFSPLVASNLSPSLRSMTLSPSFEQVGYFSGSFSSFP 149

Query:   114 KTGFYYLKQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQH 173
             +         D  +     ++ +M+ E +RLRT  +WP    +    +AKAG    G   
Sbjct:   150 RDPVTTRAAEDLSHLRSKLQNPSMSTEEARLRTSHAWPLMC-LWPAEVAKAGLDDLGTAD 208

Query:   174 EVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKN---PEASGNVSIENEEVYKLESGR 230
             +V C  CGVK+SNW   D+ M++HR   P CPFV+N    + S NVS    + ++    R
Sbjct:   209 KVACVNCGVKLSNWEPKDNAMSEHRRHFPNCPFVENLMRDQPSFNVSNVTMQTHE---AR 265

Query:   231 LATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPN 290
             + TF NWP    V PE LA  GFYY+ + D VKC  C   +  WE GD+   EH +  P 
Sbjct:   266 VKTFINWPTRIPVQPEQLADAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWIEHAKWFPR 325

Query:   291 CPFLAR 296
             C +L R
Sbjct:   326 CEYLLR 331

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IGI;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O62640	PIAP_PIG	No assigned EC number	0.3302	0.6319	0.9832	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	557
cd00022	69	cd00022, BIR, Baculoviral inhibition of apoptosis	8e-28
cd00022	69	cd00022, BIR, Baculoviral inhibition of apoptosis	3e-26
smart00238	71	smart00238, BIR, Baculoviral inhibition of apoptos	2e-25
pfam00653	69	pfam00653, BIR, Inhibitor of Apoptosis domain	4e-25
smart00238	71	smart00238, BIR, Baculoviral inhibition of apoptos	3e-24
cd00022	69	cd00022, BIR, Baculoviral inhibition of apoptosis	1e-22
cd00022	69	cd00022, BIR, Baculoviral inhibition of apoptosis	1e-22
pfam00653	69	pfam00653, BIR, Inhibitor of Apoptosis domain	2e-22
smart00238	71	smart00238, BIR, Baculoviral inhibition of apoptos	5e-22
smart00238	71	smart00238, BIR, Baculoviral inhibition of apoptos	5e-22
pfam00653	69	pfam00653, BIR, Inhibitor of Apoptosis domain	3e-21
pfam00653	69	pfam00653, BIR, Inhibitor of Apoptosis domain	3e-21
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	2e-14
cd00022	69	cd00022, BIR, Baculoviral inhibition of apoptosis	4e-08
pfam00653	69	pfam00653, BIR, Inhibitor of Apoptosis domain	1e-06
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-06
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-05
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	0.001
smart00184	40	smart00184, RING, Ring finger	0.002

>gnl|CDD|237989 cd00022, BIR, Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

 Score =  105 bits (265), Expect = 8e-28
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSP 289
           RL TF NWP+S  VTPE LA+ GFYY  +GD+VKC +C + +  WE GD+   EHKR SP
Sbjct: 3   RLKTFKNWPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRWSP 62

Query: 290 NCPFL 294
           NCPF+
Sbjct: 63  NCPFV 67

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger. Length = 69

>gnl|CDD|237989 cd00022, BIR, Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

 Score =  101 bits (253), Expect = 3e-26
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query: 397 DSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARW 456
           ++R+ TF  WP    + P+ LA AGF+Y G+GD V+CF C   L+ W   D+PW EH RW
Sbjct: 1   EARLKTFKNWPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRW 60

Query: 457 FPECHFVML 465
            P C FV+L
Sbjct: 61  SPNCPFVLL 69

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger. Length = 69

>gnl|CDD|197595 smart00238, BIR, Baculoviral inhibition of apoptosis protein repeat

 Score = 98.9 bits (247), Expect = 2e-25
 Identities = 33/71 (46%), Positives = 43/71 (60%)

Query: 395 TLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHA 454
           + ++R+ TF  WP +S   P+ LA AGF+Y G GD V+CF C G L  W   D+PW EH 
Sbjct: 1   SEEARLKTFQNWPYNSKCTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHK 60

Query: 455 RWFPECHFVML 465
           +W P C FV  
Sbjct: 61  KWSPNCPFVRN 71

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes. Length = 71

>gnl|CDD|216045 pfam00653, BIR, Inhibitor of Apoptosis domain

 Score = 98.1 bits (245), Expect = 4e-25
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 230 RLATFNNWPVSFI---VTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
           RLATF NWP++      +PE LA+ GFYY   GD+V+C YC + +  WE  D+   EHKR
Sbjct: 1   RLATFKNWPIALKQAKPSPEKLAEAGFYYTGTGDRVRCFYCGLELDNWEPDDDPWEEHKR 60

Query: 287 QSPNCPFL 294
            SPNCPF+
Sbjct: 61  WSPNCPFV 68

BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin. Length = 69

>gnl|CDD|197595 smart00238, BIR, Baculoviral inhibition of apoptosis protein repeat

 Score = 95.8 bits (239), Expect = 3e-24
 Identities = 36/69 (52%), Positives = 44/69 (63%)

Query: 226 LESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHK 285
            E  RL TF NWP +   TPE LA+ GFYY   GD+VKC +C   +  WE GD+   EHK
Sbjct: 1   SEEARLKTFQNWPYNSKCTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHK 60

Query: 286 RQSPNCPFL 294
           + SPNCPF+
Sbjct: 61  KWSPNCPFV 69

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes. Length = 71

>gnl|CDD|237989 cd00022, BIR, Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

 Score = 91.2 bits (227), Expect = 1e-22
 Identities = 29/67 (43%), Positives = 45/67 (67%)

Query: 7  RLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDP 66
          RL+TF++WP +  V+ +++A+AGF+YTG   EV+CF CG+++ NW   D    +H+   P
Sbjct: 3  RLKTFKNWPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRWSP 62

Query: 67 GCPFVKN 73
           CPFV  
Sbjct: 63 NCPFVLL 69

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger. Length = 69

>gnl|CDD|237989 cd00022, BIR, Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

 Score = 91.2 bits (227), Expect = 1e-22
 Identities = 29/67 (43%), Positives = 45/67 (67%)

Query: 143 RLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDP 202
           RL+TF++WP +  V+ +++A+AGF+YTG   EV+CF CG+++ NW   D    +H+   P
Sbjct: 3   RLKTFKNWPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRWSP 62

Query: 203 GCPFVKN 209
            CPFV  
Sbjct: 63  NCPFVLL 69

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger. Length = 69

>gnl|CDD|216045 pfam00653, BIR, Inhibitor of Apoptosis domain

 Score = 90.4 bits (225), Expect = 2e-22
 Identities = 33/68 (48%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 399 RVLTFTTWPRDSPLG---PQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHAR 455
           R+ TF  WP         P+ LA AGF+Y G GD VRCF+C   L  W   D+PW EH R
Sbjct: 1   RLATFKNWPIALKQAKPSPEKLAEAGFYYTGTGDRVRCFYCGLELDNWEPDDDPWEEHKR 60

Query: 456 WFPECHFV 463
           W P C FV
Sbjct: 61  WSPNCPFV 68

BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin. Length = 69

>gnl|CDD|197595 smart00238, BIR, Baculoviral inhibition of apoptosis protein repeat

 Score = 89.7 bits (223), Expect = 5e-22
 Identities = 33/71 (46%), Positives = 48/71 (67%)

Query: 3  FERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHR 62
           E +RL+TFQ+WP NS  + +++A+AGF+YTG   EV+CF CG ++ NW   D    +H+
Sbjct: 1  SEEARLKTFQNWPYNSKCTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHK 60

Query: 63 AKDPGCPFVKN 73
             P CPFV+N
Sbjct: 61 KWSPNCPFVRN 71

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes. Length = 71

>gnl|CDD|197595 smart00238, BIR, Baculoviral inhibition of apoptosis protein repeat

 Score = 89.7 bits (223), Expect = 5e-22
 Identities = 33/71 (46%), Positives = 48/71 (67%)

Query: 139 FERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHR 198
            E +RL+TFQ+WP NS  + +++A+AGF+YTG   EV+CF CG ++ NW   D    +H+
Sbjct: 1   SEEARLKTFQNWPYNSKCTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHK 60

Query: 199 AKDPGCPFVKN 209
              P CPFV+N
Sbjct: 61  KWSPNCPFVRN 71

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes. Length = 71

>gnl|CDD|216045 pfam00653, BIR, Inhibitor of Apoptosis domain

 Score = 87.0 bits (216), Expect = 3e-21
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 7  RLRTFQSWPS---NSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
          RL TF++WP     +  S +++A+AGF+YTG    V+CF CG+++ NW  +D    +H+ 
Sbjct: 1  RLATFKNWPIALKQAKPSPEKLAEAGFYYTGTGDRVRCFYCGLELDNWEPDDDPWEEHKR 60

Query: 64 KDPGCPFVK 72
            P CPFV 
Sbjct: 61 WSPNCPFVL 69

BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin. Length = 69

>gnl|CDD|216045 pfam00653, BIR, Inhibitor of Apoptosis domain

 Score = 87.0 bits (216), Expect = 3e-21
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 143 RLRTFQSWPS---NSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 199
           RL TF++WP     +  S +++A+AGF+YTG    V+CF CG+++ NW  +D    +H+ 
Sbjct: 1   RLATFKNWPIALKQAKPSPEKLAEAGFYYTGTGDRVRCFYCGLELDNWEPDDDPWEEHKR 60

Query: 200 KDPGCPFVK 208
             P CPFV 
Sbjct: 61  WSPNCPFVL 69

BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin. Length = 69

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL---PRCPVCRENIKAT 551
           E  LC IC+++   VV LPCGHL  C  CA  L    +CP+CR+ I++ 
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49

Length = 49

>gnl|CDD|237989 cd00022, BIR, Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 20/32 (62%), Positives = 24/32 (75%)

Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
           RL TF NWP+S  VTPE LA+ GFYY  +GD+
Sbjct: 3   RLKTFKNWPISLKVTPEKLAEAGFYYTGRGDE 34

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger. Length = 69

>gnl|CDD|216045 pfam00653, BIR, Inhibitor of Apoptosis domain

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 3/35 (8%)

Query: 344 RLATFNNWPVSFI---VTPEALAKTGFYYLKQGDK 375
           RLATF NWP++      +PE LA+ GFYY   GD+
Sbjct: 1   RLATFKNWPIALKQAKPSPEKLAEAGFYYTGTGDR 35

BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin. Length = 69

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 506 EARLCKICMDKEVG-VVLLPCGHLVTCVLCASSL----PRCPVCRE 546
           E   C IC+D     VVL PCGH V C  C         +CP+CR 
Sbjct: 1   EELECPICLDLLRDPVVLTPCGH-VFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 7/45 (15%)

Query: 510 CKICMDK-EVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENI 548
           C IC+++    VVLLPCGH V C  C           CP+CR  I
Sbjct: 2   CPICLEEFREPVVLLPCGH-VFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 8/43 (18%)

Query: 510 CKICMDKEVG---VVLLPCGHLVTCVLCASSL----PRCPVCR 545
           C IC+D+      VV+LPCGH+     C          CP+CR
Sbjct: 3   CPICLDEFEPGEEVVVLPCGHVF-HKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 7/41 (17%)

Query: 510 CKICMDK-EVGVVLLPCGHLVTCVLCASSL-----PRCPVC 544
           C IC+++     V+LPCGH   C  C           CP+C
Sbjct: 1   CPICLEEYLKDPVILPCGHTF-CRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	557
KOG1101|consensus	147		99.91
KOG1101|consensus	147		99.89
smart00238	71	BIR Baculoviral inhibition of apoptosis protein re	99.86
PF00653	70	BIR: Inhibitor of Apoptosis domain; InterPro: IPR0	99.85
cd00022	69	BIR Baculoviral inhibition of apoptosis protein re	99.83
smart00238	71	BIR Baculoviral inhibition of apoptosis protein re	99.83
cd00022	69	BIR Baculoviral inhibition of apoptosis protein re	99.81
PF00653	70	BIR: Inhibitor of Apoptosis domain; InterPro: IPR0	99.81
KOG4172|consensus	62		99.07
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.07
KOG4275|consensus	350		99.04
KOG4265|consensus	349		98.99
KOG1571|consensus	355		98.71
KOG1100|consensus	207		98.56
KOG1785|consensus	563		97.95
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.65
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	97.62
PHA02929	238	N1R/p28-like protein; Provisional	97.62
PF14634	44	zf-RING_5: zinc-RING finger domain	97.52
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.35
KOG0978|consensus	698		97.34
PHA02926	242	zinc finger-like protein; Provisional	97.29
KOG0317|consensus	293		97.24
KOG0320|consensus	187		97.13
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.1
KOG0823|consensus	230		97.0
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	96.93
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	96.89
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	96.65
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	96.57
KOG2164|consensus	513		96.44
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.36
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.27
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.18
KOG4692|consensus	489		96.15
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	96.04
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	95.71
PF07967	133	zf-C3HC: C3HC zinc finger-like ; InterPro: IPR0129	95.49
KOG2177|consensus	386		95.25
KOG0287|consensus	442		95.11
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	95.05
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	95.0
PF07967	133	zf-C3HC: C3HC zinc finger-like ; InterPro: IPR0129	94.98
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	94.49
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	94.11
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	93.73
KOG0802|consensus	543		92.46
KOG1039|consensus	344		90.87
KOG3002|consensus	299		89.57
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	88.75
KOG4628|consensus	348		88.48
KOG4159|consensus	398		88.23
KOG2113|consensus	394		87.68
KOG1814|consensus	445		86.73
KOG2932|consensus	389		84.83
COG5152	259	Uncharacterized conserved protein, contains RING a	83.73

>KOG1101|consensus

Probab=99.91  E-value=5.4e-25  Score=201.94  Aligned_cols=95  Identities=41%  Similarity=0.964  Sum_probs=88.8

Q ss_pred             CCCCCCCCcChHhHhhhccCCCCCC--CCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchh
Q psy2747         386 RVPKHPNLSTLDSRVLTFTTWPRDS--PLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFV  463 (557)
Q Consensus       386 ~~p~~p~~~~~~~Rl~Sf~~wp~~~--~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv  463 (557)
                      ..|.+|.|..+++||+||.+||...  .++++.||+|||||+|.+|.++||+|+++|.+|+++||||.||++|+|.|.|+
T Consensus         5 ~~~~~~~~~~~~aRl~TF~~Wp~~~~~~c~p~~lA~AGFy~~g~~D~~~Cf~C~~~L~~We~~DDPW~EH~k~~p~C~F~   84 (147)
T KOG1101|consen    5 FDPQNPKMAREEARLKTFKNWPYSDMDKCTPEQLAEAGFYYTGKQDCVKCFFCSGGLDDWEPGDDPWEEHAKWSPECEFL   84 (147)
T ss_pred             ccccchhHHHHHHHHhhhhcCCCCCCCCcCHHHHHhCCceeeCCCCceECcccCcccccCCCCCCcHHHHHhhCCCCcee
Confidence            3577889999999999999999876  68999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHhhhhcCC
Q psy2747         464 MLVKGEQFIEDTIKANP  480 (557)
Q Consensus       464 ~~~kG~~fv~~v~~~~~  480 (557)
                      ++.||++|+..++....
T Consensus        85 ~~~k~~e~~~~v~~~~~  101 (147)
T KOG1101|consen   85 KLKKGREFLGTVQSTAR  101 (147)
T ss_pred             ecccchhhhhHHHHhHh
Confidence            99999999998876553

>KOG1101|consensus

Probab=99.89  E-value=4.8e-24  Score=195.71  Aligned_cols=91  Identities=38%  Similarity=0.671  Sum_probs=83.6

Q ss_pred             CCccccccHHHHHccCCCCCCCC--CCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccc
Q psy2747         219 ENEEVYKLESGRLATFNNWPVSF--IVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLAR  296 (557)
Q Consensus       219 ~~~~~~~~~~~Rl~SF~~wp~~~--~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~  296 (557)
                      ++.+.|..+++||+||.+||+..  .++|+.||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|.|.|++.
T Consensus         7 ~~~~~~~~~~aRl~TF~~Wp~~~~~~c~p~~lA~AGFy~~g~~D~~~Cf~C~~~L~~We~~DDPW~EH~k~~p~C~F~~~   86 (147)
T KOG1101|consen    7 PQNPKMAREEARLKTFKNWPYSDMDKCTPEQLAEAGFYYTGKQDCVKCFFCSGGLDDWEPGDDPWEEHAKWSPECEFLKL   86 (147)
T ss_pred             ccchhHHHHHHHHhhhhcCCCCCCCCcCHHHHHhCCceeeCCCCceECcccCcccccCCCCCCcHHHHHhhCCCCceeec
Confidence            34568899999999999999986  5799999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhhhh
Q psy2747         297 DNQATQANMINLR  309 (557)
Q Consensus       297 ~~~~~~~~~~~~~  309 (557)
                      .||+++...++..
T Consensus        87 ~k~~e~~~~v~~~   99 (147)
T KOG1101|consen   87 KKGREFLGTVQST   99 (147)
T ss_pred             ccchhhhhHHHHh
Confidence            9998877766643

>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat

Probab=99.86  E-value=2.8e-22  Score=163.09  Aligned_cols=70  Identities=46%  Similarity=0.992  Sum_probs=66.1

Q ss_pred             chHHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCc
Q psy2747           3 FERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVK   72 (557)
Q Consensus         3 ~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~   72 (557)
                      +|++||+||.+||....+.++.||+|||||+|.+|.|+|++|+++|++|+.+|+|+++|.+++|+|+|++
T Consensus         1 ~~~~R~~sF~~w~~~~~~~~~~LA~~Gfyy~~~~d~v~C~~C~~~l~~w~~~d~p~~~H~~~~p~C~fv~   70 (71)
T smart00238        1 SEEARLKTFQNWPYNSKLTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPFVR   70 (71)
T ss_pred             CHHHHHHHHHcCCCCccCCHHHHHHcCCeECCCCCEEEeCCCCCCcCCCCCCCCHHHHHhHhCcCCcCcc
Confidence            4789999999999745679999999999999999999999999999999999999999999999999985

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.

>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.85  E-value=3.4e-22  Score=162.17  Aligned_cols=66  Identities=47%  Similarity=1.140  Sum_probs=58.4

Q ss_pred             HHhhcc-CCCCC---CCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCc
Q psy2747           7 RLRTFQ-SWPSN---SPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVK   72 (557)
Q Consensus         7 Rl~TF~-~wp~~---~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~   72 (557)
                      ||+||. +||..   ..++++.||+|||||+|.+|+|+||+||++|++|+++|||+++|++++|+|+|++
T Consensus         1 Rl~SF~~~wp~~~~~~~~~~~~LA~aGFyy~~~~d~v~C~~C~~~l~~w~~~Ddp~~~H~~~sp~C~f~k   70 (70)
T PF00653_consen    1 RLKSFRSNWPHSNDHDPVSPEKLARAGFYYTGTGDRVRCFYCGLELDNWEPNDDPWEEHKRHSPNCPFVK   70 (70)
T ss_dssp             HHHGGTTGSSTTTTTSSSHHHHHHHTTEEEESSTTEEEETTTTEEEES-STT--HHHHHHHHSTTBHHHH
T ss_pred             ChhHHCCcccCccccCCCCHHHHHHCCCEEcCCCCEEEEeccCCEEeCCCCCCCHHHHHHHHCcCCeecC
Confidence            999996 59963   3688999999999999999999999999999999999999999999999999873

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....

>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

Probab=99.83  E-value=2.4e-21  Score=156.64  Aligned_cols=68  Identities=43%  Similarity=1.002  Sum_probs=64.5

Q ss_pred             HHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCc
Q psy2747           5 RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVK   72 (557)
Q Consensus         5 ~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~   72 (557)
                      ++||+||.+||......++.||+|||||+|.+|.|+|++|+.+|++|+.+|+|+++|.+++|+|+|++
T Consensus         1 ~~R~~TF~~w~~~~~~~~~~La~~Gfyy~~~~d~v~C~~C~~~~~~w~~~d~p~~~H~~~~p~C~fv~   68 (69)
T cd00022           1 EARLKTFKNWPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPFVL   68 (69)
T ss_pred             ChHHHHHHcCCCCccCCHHHHHHcCCeEcCCCCEEEeCCCCCCccCCCCCCCHHHHHhHhCcCCcCcc
Confidence            47999999999864678999999999999999999999999999999999999999999999999985

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.

>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat

Probab=99.83  E-value=4e-21  Score=156.26  Aligned_cols=70  Identities=46%  Similarity=0.992  Sum_probs=65.4

Q ss_pred             hHHHHHhhccCCCCCCccCHHHHHHcCceecCCCCceeccccccccccccCCCChHHHhhcCCCCCCCcc
Q psy2747         139 FERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVK  208 (557)
Q Consensus       139 ~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~w~~~D~p~~eH~~~~p~C~f~~  208 (557)
                      ++++|++||.+||+.....+++||+|||||+|.+|.|+|++|++.|++|+.+|+|+++|++++|.|+|++
T Consensus         1 ~~~~R~~sF~~w~~~~~~~~~~LA~~Gfyy~~~~d~v~C~~C~~~l~~w~~~d~p~~~H~~~~p~C~fv~   70 (71)
T smart00238        1 SEEARLKTFQNWPYNSKLTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPFVR   70 (71)
T ss_pred             CHHHHHHHHHcCCCCccCCHHHHHHcCCeECCCCCEEEeCCCCCCcCCCCCCCCHHHHHhHhCcCCcCcc
Confidence            3689999999999744478999999999999999999999999999999999999999999999999985

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.

>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

Probab=99.81  E-value=1.5e-20  Score=152.06  Aligned_cols=68  Identities=56%  Similarity=1.136  Sum_probs=64.2

Q ss_pred             HHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCcccc
Q psy2747         228 SGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLA  295 (557)
Q Consensus       228 ~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~  295 (557)
                      ++|++||.+||++....+++||++||||+|.+|.|+|++|++.|.+|+++|+|+.+|++++|.|+|++
T Consensus         1 ~~R~~TF~~w~~~~~~~~~~La~~Gfyy~~~~d~v~C~~C~~~~~~w~~~d~p~~~H~~~~p~C~fv~   68 (69)
T cd00022           1 EARLKTFKNWPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPFVL   68 (69)
T ss_pred             ChHHHHHHcCCCCccCCHHHHHHcCCeEcCCCCEEEeCCCCCCccCCCCCCCHHHHHhHhCcCCcCcc
Confidence            37999999999984458999999999999999999999999999999999999999999999999986

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.

>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.81  E-value=1.4e-20  Score=152.74  Aligned_cols=66  Identities=53%  Similarity=1.118  Sum_probs=58.0

Q ss_pred             HHccCC-CCCCCC---CCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCcccc
Q psy2747         230 RLATFN-NWPVSF---IVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLA  295 (557)
Q Consensus       230 Rl~SF~-~wp~~~---~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~  295 (557)
                      ||+||. +||+..   .+++++||+|||||+|.+|+|+|++|++.|.+|+++||||++|.+++|+|+|++
T Consensus         1 Rl~SF~~~wp~~~~~~~~~~~~LA~aGFyy~~~~d~v~C~~C~~~l~~w~~~Ddp~~~H~~~sp~C~f~k   70 (70)
T PF00653_consen    1 RLKSFRSNWPHSNDHDPVSPEKLARAGFYYTGTGDRVRCFYCGLELDNWEPNDDPWEEHKRHSPNCPFVK   70 (70)
T ss_dssp             HHHGGTTGSSTTTTTSSSHHHHHHHTTEEEESSTTEEEETTTTEEEES-STT--HHHHHHHHSTTBHHHH
T ss_pred             ChhHHCCcccCccccCCCCHHHHHHCCCEEcCCCCEEEEeccCCEEeCCCCCCCHHHHHHHHCcCCeecC
Confidence            899996 599653   357999999999999999999999999999999999999999999999999974

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....

>KOG4172|consensus

Probab=99.07  E-value=3.4e-12  Score=95.24  Aligned_cols=50  Identities=40%  Similarity=0.931  Sum_probs=46.8

Q ss_pred             cccccccccccceEEecCCccccchhhhcCC-----CCCCCCccccccEEEEeeC
Q psy2747         508 RLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKATVRTFLS  557 (557)
Q Consensus       508 ~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~~i~i~~s  557 (557)
                      .+|.||++++.+.|+.-|||+|+|..|+.++     ..||+||++|..+|+.|.|
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s   62 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS   62 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence            6799999999999999999999999999876     5799999999999999875

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.07  E-value=4.7e-11  Score=90.32  Aligned_cols=45  Identities=47%  Similarity=1.088  Sum_probs=40.1

Q ss_pred             ccccccccccccceEEecCCccccchhhhcCC----CCCCCCccccccE
Q psy2747         507 ARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKAT  551 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~  551 (557)
                      +..|.||+++.++++++||||.++|..|+.++    .+||+||++|+++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV   50 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence            46899999999999999999999999999987    8999999999864

...

>KOG4275|consensus

Probab=99.04  E-value=2.4e-11  Score=120.22  Aligned_cols=51  Identities=47%  Similarity=1.031  Sum_probs=48.9

Q ss_pred             ccccccccccccceEEecCCccccchhhhcCCCCCCCCccccccEEEEeeC
Q psy2747         507 ARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS  557 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~~~CP~CR~~i~~~i~i~~s  557 (557)
                      ..+|.|||+.+++.+|++|||.+.|.+|...|..|||||+.|..+++||.+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~  350 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV  350 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence            678999999999999999999999999999999999999999999999964

>KOG4265|consensus

Probab=98.99  E-value=9.7e-11  Score=119.95  Aligned_cols=52  Identities=37%  Similarity=0.912  Sum_probs=47.9

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC----CCCCCCccccccEEEEee
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVRTFL  556 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i~i~~  556 (557)
                      ++..+|+||++..++++++||.|+|+|..||..+    .+|||||++|...+.|+.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            3467899999999999999999999999999987    579999999999999875

>KOG1571|consensus

Probab=98.71  E-value=2.2e-09  Score=110.16  Aligned_cols=52  Identities=40%  Similarity=1.090  Sum_probs=49.3

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCCCCCCCCccccccEEEEeeC
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS  557 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~~~CP~CR~~i~~~i~i~~s  557 (557)
                      ....|+||.+++.+++|+||||+|+|..|+..+.+||+||..|...+++|.+
T Consensus       304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~  355 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS  355 (355)
T ss_pred             CCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence            3578999999999999999999999999999999999999999999999975

>KOG1100|consensus

Probab=98.56  E-value=3.5e-08  Score=96.44  Aligned_cols=52  Identities=38%  Similarity=0.893  Sum_probs=47.7

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCCCCCCCCccccccEEEEee
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFL  556 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~~~CP~CR~~i~~~i~i~~  556 (557)
                      .....|+.|.++++.++++||.|+++|..|...+..||+|+.++.+.+.||+
T Consensus       156 ~~~~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~  207 (207)
T KOG1100|consen  156 KRMRSCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF  207 (207)
T ss_pred             hccccceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence            3344499999999999999999999999999999999999999999999985

>KOG1785|consensus

Probab=97.95  E-value=4.2e-06  Score=86.52  Aligned_cols=62  Identities=37%  Similarity=0.759  Sum_probs=48.2

Q ss_pred             cccChHHHHHHHHh----ccccccccccccceEEecCCccccchhhhcCC------CCCCCCccccccEEEEe
Q psy2747         493 FVKSLEEEVRRLRE----ARLCKICMDKEVGVVLLPCGHLVTCVLCASSL------PRCPVCRENIKATVRTF  555 (557)
Q Consensus       493 ~~~~~~~~~~~~~~----~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~------~~CP~CR~~i~~~i~i~  555 (557)
                      .+...+||.+-.-+    -.+|+||-++++++-+-||||+ +|..|....      +.||.||..|.++-.|-
T Consensus       351 ~i~VtqEQyeLYceMgsTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi  422 (563)
T KOG1785|consen  351 RIKVTQEQYELYCEMGSTFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI  422 (563)
T ss_pred             ceeeeHHHHHHHHHccchHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence            34444555443222    2589999999999999999999 899998764      69999999999876553

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.65  E-value=1.8e-05  Score=56.50  Aligned_cols=34  Identities=47%  Similarity=1.196  Sum_probs=28.4

Q ss_pred             cccccccccce-EEecCCccccchhhhcCC----CCCCCC
Q psy2747         510 CKICMDKEVGV-VLLPCGHLVTCVLCASSL----PRCPVC  544 (557)
Q Consensus       510 C~IC~~~~~~~-~~~PCgH~~~C~~Ca~~~----~~CP~C  544 (557)
                      |.||++...+. +++||||. +|.+|..+.    .+||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence            78999999998 68999999 899999754    789987

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=97.62  E-value=2.1e-05  Score=75.49  Aligned_cols=50  Identities=34%  Similarity=0.817  Sum_probs=41.5

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcC--------------------CCCCCCCcccccc--EEEEe
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASS--------------------LPRCPVCRENIKA--TVRTF  555 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~--------------------~~~CP~CR~~i~~--~i~i~  555 (557)
                      .+...|.||++...+.++.+|||. +|..|...                    ...||+||.+|..  ++.||
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            346789999999999999999998 89999953                    1489999999976  45555

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.62  E-value=3e-05  Score=77.27  Aligned_cols=49  Identities=31%  Similarity=0.777  Sum_probs=39.2

Q ss_pred             hccccccccccccc--------eEEecCCccccchhhhcCC----CCCCCCccccccEEEEe
Q psy2747         506 EARLCKICMDKEVG--------VVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVRTF  555 (557)
Q Consensus       506 ~~~~C~IC~~~~~~--------~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i~i~  555 (557)
                      +...|.||++.-.+        .++.||||. +|..|....    ..||+||.++..+++..
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r  233 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSR  233 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeee
Confidence            45789999986322        466789998 999999643    79999999999988754

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.52  E-value=5.3e-05  Score=55.59  Aligned_cols=37  Identities=41%  Similarity=1.039  Sum_probs=31.4

Q ss_pred             ccccccccc---cceEEecCCccccchhhhcCCC----CCCCCcc
Q psy2747         509 LCKICMDKE---VGVVLLPCGHLVTCVLCASSLP----RCPVCRE  546 (557)
Q Consensus       509 ~C~IC~~~~---~~~~~~PCgH~~~C~~Ca~~~~----~CP~CR~  546 (557)
                      .|.||++.-   ...++++|||. +|..|+..+.    .||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence            378888655   56788999999 8999999886    9999985

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.35  E-value=7.1e-05  Score=54.80  Aligned_cols=36  Identities=44%  Similarity=0.980  Sum_probs=29.8

Q ss_pred             ccccccccc---cceEEecCCccccchhhhcCC----CCCCCCc
Q psy2747         509 LCKICMDKE---VGVVLLPCGHLVTCVLCASSL----PRCPVCR  545 (557)
Q Consensus       509 ~C~IC~~~~---~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR  545 (557)
                      .|.||++.-   ..++.+||||. +|.+|....    ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence            699999754   57888899998 899999865    7999998

...

>KOG0978|consensus

Probab=97.34  E-value=5.2e-05  Score=85.14  Aligned_cols=61  Identities=30%  Similarity=0.672  Sum_probs=52.4

Q ss_pred             cChHHHHHHHHhccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc--EEEEee
Q psy2747         495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA--TVRTFL  556 (557)
Q Consensus       495 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~--~i~i~~  556 (557)
                      ..|.+++++......|.+|.++.+++|+.-|||+ +|..|....     .+||.|.+++-.  +.+||+
T Consensus       631 ~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l  698 (698)
T KOG0978|consen  631 EVLAEELKEYKELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL  698 (698)
T ss_pred             HHHHHHHHHHHhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence            4467888888889999999999999999999999 999999864     899999998754  566654

>PHA02926 zinc finger-like protein; Provisional

Probab=97.29  E-value=8e-05  Score=72.32  Aligned_cols=53  Identities=26%  Similarity=0.688  Sum_probs=40.2

Q ss_pred             HHHHHHhccccccccccc---------cceEEecCCccccchhhhcCC----------CCCCCCccccccEEE
Q psy2747         500 EVRRLREARLCKICMDKE---------VGVVLLPCGHLVTCVLCASSL----------PRCPVCRENIKATVR  553 (557)
Q Consensus       500 ~~~~~~~~~~C~IC~~~~---------~~~~~~PCgH~~~C~~Ca~~~----------~~CP~CR~~i~~~i~  553 (557)
                      .+-+..++..|.||++..         +-.++.+|+|. +|..|....          ..||+||..+..++.
T Consensus       163 ~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        163 DVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             HHHhccCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence            334445578999999863         23678899999 999999754          239999999886643

>KOG0317|consensus

Probab=97.24  E-value=9.9e-05  Score=74.21  Aligned_cols=48  Identities=29%  Similarity=0.823  Sum_probs=40.7

Q ss_pred             ccccccccccccceEEecCCccccchhhhcCC----CCCCCCccccccEEEEe
Q psy2747         507 ARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVRTF  555 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i~i~  555 (557)
                      ...|.+|++...+-...||||+ +|-.|....    ..||+||.+..-.--|.
T Consensus       239 ~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~  290 (293)
T KOG0317|consen  239 TRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC  290 (293)
T ss_pred             CCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence            4789999999999999999999 899998754    68999999887654443

>KOG0320|consensus

Probab=97.13  E-value=0.00014  Score=68.33  Aligned_cols=49  Identities=35%  Similarity=0.834  Sum_probs=38.7

Q ss_pred             ccccccccccccceE-E-ecCCccccchhhhcCC----CCCCCCcccccc--EEEEee
Q psy2747         507 ARLCKICMDKEVGVV-L-LPCGHLVTCVLCASSL----PRCPVCRENIKA--TVRTFL  556 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~-~-~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~--~i~i~~  556 (557)
                      .-.|.|||+.....+ + --|||+ +|..|+...    .+||+||.+|+.  +.+|||
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L  187 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL  187 (187)
T ss_pred             ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence            357999998766655 2 589999 999999864    799999977765  577775

>smart00184 RING Ring finger

Probab=97.10  E-value=0.00038  Score=48.13  Aligned_cols=34  Identities=41%  Similarity=1.096  Sum_probs=30.1

Q ss_pred             cccccccccceEEecCCccccchhhhcC-----CCCCCCC
Q psy2747         510 CKICMDKEVGVVLLPCGHLVTCVLCASS-----LPRCPVC  544 (557)
Q Consensus       510 C~IC~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~CP~C  544 (557)
                      |.||++.....+++||||. +|..|...     ...||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence            7899999999999999999 89999974     3579987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0823|consensus

Probab=97.00  E-value=0.00041  Score=67.94  Aligned_cols=49  Identities=33%  Similarity=0.732  Sum_probs=41.7

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCC-------CCCCCCcccccc--EEEEe
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-------PRCPVCRENIKA--TVRTF  555 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-------~~CP~CR~~i~~--~i~i~  555 (557)
                      ....|-||+|..++.|+-+|||+ +|=.|.-+.       +.||+|++.|..  ++.||
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            35689999999999999999999 899999764       789999997654  56666

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=96.93  E-value=0.00071  Score=48.46  Aligned_cols=39  Identities=44%  Similarity=1.025  Sum_probs=30.3

Q ss_pred             ccccccccccce-EEecCCccccchhhhcC-----CCCCCCCcccc
Q psy2747         509 LCKICMDKEVGV-VLLPCGHLVTCVLCASS-----LPRCPVCRENI  548 (557)
Q Consensus       509 ~C~IC~~~~~~~-~~~PCgH~~~C~~Ca~~-----~~~CP~CR~~i  548 (557)
                      .|.||++..... .+.||||. +|..|...     ...||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence            489999887444 44559999 89999973     35799999864

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.89  E-value=0.0004  Score=49.84  Aligned_cols=34  Identities=44%  Similarity=1.086  Sum_probs=29.9

Q ss_pred             cccccccccceE-EecCCccccchhhhcCC------CCCCCC
Q psy2747         510 CKICMDKEVGVV-LLPCGHLVTCVLCASSL------PRCPVC  544 (557)
Q Consensus       510 C~IC~~~~~~~~-~~PCgH~~~C~~Ca~~~------~~CP~C  544 (557)
                      |.||++.....+ ++||||. +|..|..++      ..||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence            789999988888 9999999 899999754      579887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=96.65  E-value=0.0009  Score=48.67  Aligned_cols=34  Identities=47%  Similarity=1.015  Sum_probs=26.4

Q ss_pred             cccccccccceEEecCCccccchhhhcCC--------CCCCCC
Q psy2747         510 CKICMDKEVGVVLLPCGHLVTCVLCASSL--------PRCPVC  544 (557)
Q Consensus       510 C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~--------~~CP~C  544 (557)
                      |.||++--.+-+.++|||. +|..|..+.        ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence            7899999999999999999 899999764        268887

>TIGR00599 rad18 DNA repair protein rad18

Probab=96.57  E-value=0.00069  Score=72.38  Aligned_cols=48  Identities=35%  Similarity=0.718  Sum_probs=40.6

Q ss_pred             HHHHhccccccccccccceEEecCCccccchhhhcC----CCCCCCCcccccc
Q psy2747         502 RRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASS----LPRCPVCRENIKA  550 (557)
Q Consensus       502 ~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~----~~~CP~CR~~i~~  550 (557)
                      ..+.....|.||.+.-.+.++.||||. +|..|...    ...||+||..+..
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence            445567899999999989899999999 89999974    2579999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2164|consensus

Probab=96.44  E-value=0.0013  Score=70.91  Aligned_cols=48  Identities=31%  Similarity=0.728  Sum_probs=41.4

Q ss_pred             ccccccccccccceEEecCCccccchhhhcCC---------CCCCCCcccccc--EEEEe
Q psy2747         507 ARLCKICMDKEVGVVLLPCGHLVTCVLCASSL---------PRCPVCRENIKA--TVRTF  555 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~---------~~CP~CR~~i~~--~i~i~  555 (557)
                      ...|.||++.+...+..-|||. +|-.|.-.+         ..||+||..|..  +..|+
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            6789999999999999999999 899998643         799999999987  55554

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.36  E-value=0.0016  Score=66.86  Aligned_cols=47  Identities=38%  Similarity=0.829  Sum_probs=41.2

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC------CCCCCCccccccEE
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL------PRCPVCRENIKATV  552 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~------~~CP~CR~~i~~~i  552 (557)
                      ++...|+||-+.-.-+.++||+|. +|..|+.++      +.||+||..-..++
T Consensus        59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~  111 (493)
T COG5236          59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV  111 (493)
T ss_pred             cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence            456789999999999999999999 799999875      89999999877654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.27  E-value=0.0018  Score=49.47  Aligned_cols=44  Identities=30%  Similarity=0.677  Sum_probs=37.7

Q ss_pred             hccccccccccccceEEecCCccccchhhhcC--CCCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASS--LPRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~--~~~CP~CR~~i~~  550 (557)
                      ....|+.|......-+++||||+ .|..|-..  ..-||+|-.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence            35679999999899999999999 69999875  4799999998864

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.0017  Score=64.64  Aligned_cols=42  Identities=31%  Similarity=0.777  Sum_probs=36.7

Q ss_pred             ccccccccccccceEEecCCccccchhhhcCC------CCCCCCccccc
Q psy2747         507 ARLCKICMDKEVGVVLLPCGHLVTCVLCASSL------PRCPVCRENIK  549 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~------~~CP~CR~~i~  549 (557)
                      ...|.||++..-...-.||||+ +|-.|.-.+      ..||+||+.+.
T Consensus       215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence            5689999999999999999999 899998762      57999999764

>KOG4692|consensus

Probab=96.15  E-value=0.0014  Score=67.38  Aligned_cols=45  Identities=31%  Similarity=0.804  Sum_probs=39.5

Q ss_pred             hccccccccccccceEEecCCccccchhhhcC----CCCCCCCccccccE
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASS----LPRCPVCRENIKAT  551 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~----~~~CP~CR~~i~~~  551 (557)
                      ++.+|.||+..+++++|-||+|. .|..|...    .+.|-.|...|...
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~  469 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDV  469 (489)
T ss_pred             ccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeeh
Confidence            46799999999999999999999 79999975    38999999987753

>smart00504 Ubox Modified RING finger domain

Probab=96.04  E-value=0.0041  Score=48.70  Aligned_cols=42  Identities=21%  Similarity=0.289  Sum_probs=36.4

Q ss_pred             cccccccccccceEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         508 RLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       508 ~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      ..|.||.+--.+-+..||||. +|..|....    ..||+|+.++..
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            469999999888999999998 899999865    689999998843

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=95.71  E-value=0.0038  Score=45.64  Aligned_cols=27  Identities=41%  Similarity=0.974  Sum_probs=17.3

Q ss_pred             cccccccccc----eEEecCCccccchhhhcCC
Q psy2747         510 CKICMDKEVG----VVLLPCGHLVTCVLCASSL  538 (557)
Q Consensus       510 C~IC~~~~~~----~~~~PCgH~~~C~~Ca~~~  538 (557)
                      |.||.+ ..+    -+.+||||. +|.+|..++
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL   31 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence            788888 555    678899999 899999876

>PF07967 zf-C3HC: C3HC zinc finger-like ; InterPro: IPR012935 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.49  E-value=0.015  Score=53.12  Aligned_cols=45  Identities=27%  Similarity=0.561  Sum_probs=37.7

Q ss_pred             HHHHhhccC--CC-CCCCCCHHHHHHcCceeecCCCceeeeeecceecC
Q psy2747           5 RSRLRTFQS--WP-SNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISN   50 (557)
Q Consensus         5 ~~Rl~TF~~--wp-~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~   50 (557)
                      ..||+||..  |. ....+++-.+|+.|+..++ +|.++|-.||..+.-
T Consensus         8 l~RL~Tf~~~~W~~kp~~lspl~cA~~GW~~~~-~d~l~C~~C~~~l~~   55 (133)
T PF07967_consen    8 LRRLETFKSLTWFPKPPWLSPLECARRGWICVS-KDMLKCESCGARLCV   55 (133)
T ss_pred             HHHHHHcccccccCCCcccCHHHHHHcCCCcCC-CCEEEeCCCCCEEEE
Confidence            369999985  83 3467999999999999977 889999999999643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc-finger like domain is distributed throughout the eukaryotic kingdom in NIPA (Nuclear interacting partner of ALK) and other proteins. NIPA is thought to perform an antiapoptotic role in nucleophosmin-anaplastic lymphoma kinase (ALK) mediated signalling events []. The domain is often repeated, with the second domain usually containing a large insert (approximately 90 residues) after the first three cysteine residues. The Schizosaccharomyces pombe protein containing this domain (O94506 from SWISSPROT) is involved in mRNA export from the nucleus []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus

>KOG2177|consensus

Probab=95.25  E-value=0.0064  Score=61.28  Aligned_cols=44  Identities=43%  Similarity=0.883  Sum_probs=37.5

Q ss_pred             HHHHhccccccccccccceEEecCCccccchhhhcCC----CCCCCCcc
Q psy2747         502 RRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRE  546 (557)
Q Consensus       502 ~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~  546 (557)
                      ..+.+...|.||++.-....++||||. +|..|...+    -.||.||.
T Consensus         8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen    8 EVLQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             hhccccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence            344567899999998888899999999 899999875    48999993

>KOG0287|consensus

Probab=95.11  E-value=0.0065  Score=62.37  Aligned_cols=46  Identities=30%  Similarity=0.782  Sum_probs=40.0

Q ss_pred             HHhccccccccccccceEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         504 LREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       504 ~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      +.+...|-||++--.-.++.||+|- +|.-|....    ..||.|+.+++.
T Consensus        20 lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   20 LDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             hHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence            4455679999999999999999999 899999864    799999998765

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=95.05  E-value=0.015  Score=45.92  Aligned_cols=47  Identities=36%  Similarity=0.698  Sum_probs=27.0

Q ss_pred             HHHHhccccccccccccceE-EecCCccccchhhhcCC--CCCCCCccccc
Q psy2747         502 RRLREARLCKICMDKEVGVV-LLPCGHLVTCVLCASSL--PRCPVCRENIK  549 (557)
Q Consensus       502 ~~~~~~~~C~IC~~~~~~~~-~~PCgH~~~C~~Ca~~~--~~CP~CR~~i~  549 (557)
                      +++++...|.+|.+--+..| +--|.|. +|..|....  ..||+|+.|..
T Consensus         2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Paw   51 (65)
T PF14835_consen    2 ERLEELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPAW   51 (65)
T ss_dssp             HHHHHTTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-S
T ss_pred             hHHHHhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChHH
Confidence            45667789999998877765 5689999 899999875  78999998763

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=95.00  E-value=0.0087  Score=60.25  Aligned_cols=46  Identities=37%  Similarity=0.710  Sum_probs=39.1

Q ss_pred             HHhccccccccccccceEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         504 LREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       504 ~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      +.....|.||.+.-+--++-||||. +|.-|...-    ..||+||.+...
T Consensus        22 LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          22 LDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             chhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence            3456689999999999999999999 899999763    799999987543

>PF07967 zf-C3HC: C3HC zinc finger-like ; InterPro: IPR012935 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.98  E-value=0.029  Score=51.22  Aligned_cols=49  Identities=24%  Similarity=0.453  Sum_probs=39.6

Q ss_pred             chhHHHHHhhccC--CC-CCCccCHHHHHHcCceecCCCCceecccccccccc
Q psy2747         137 MNFERSRLRTFQS--WP-SNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISN  186 (557)
Q Consensus       137 ~~~e~~Rl~TF~~--wp-~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~  186 (557)
                      ....-.||+||..  |. ....+++-.+|+.|+.-.+ .|.++|..|+..+.-
T Consensus         4 r~~~l~RL~Tf~~~~W~~kp~~lspl~cA~~GW~~~~-~d~l~C~~C~~~l~~   55 (133)
T PF07967_consen    4 REDFLRRLETFKSLTWFPKPPWLSPLECARRGWICVS-KDMLKCESCGARLCV   55 (133)
T ss_pred             HHHHHHHHHHcccccccCCCcccCHHHHHHcCCCcCC-CCEEEeCCCCCEEEE
Confidence            3445789999984  83 3446999999999998865 789999999998763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc-finger like domain is distributed throughout the eukaryotic kingdom in NIPA (Nuclear interacting partner of ALK) and other proteins. NIPA is thought to perform an antiapoptotic role in nucleophosmin-anaplastic lymphoma kinase (ALK) mediated signalling events []. The domain is often repeated, with the second domain usually containing a large insert (approximately 90 residues) after the first three cysteine residues. The Schizosaccharomyces pombe protein containing this domain (O94506 from SWISSPROT) is involved in mRNA export from the nucleus []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=0.014  Score=60.59  Aligned_cols=45  Identities=36%  Similarity=0.862  Sum_probs=33.5

Q ss_pred             HHhccccccccccc-------------cceEEecCCccccchhhhcC----CCCCCCCccccc
Q psy2747         504 LREARLCKICMDKE-------------VGVVLLPCGHLVTCVLCASS----LPRCPVCRENIK  549 (557)
Q Consensus       504 ~~~~~~C~IC~~~~-------------~~~~~~PCgH~~~C~~Ca~~----~~~CP~CR~~i~  549 (557)
                      ..+.+.|.||||.-             +.-.=+||||. +=-.|...    -++||+||.++.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCccc
Confidence            35678999999871             11245799998 67778764    489999999953

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.11  E-value=0.028  Score=45.91  Aligned_cols=36  Identities=39%  Similarity=0.912  Sum_probs=26.5

Q ss_pred             ccccccccc-------------cceEEecCCccccchhhhcCC----CCCCCCc
Q psy2747         509 LCKICMDKE-------------VGVVLLPCGHLVTCVLCASSL----PRCPVCR  545 (557)
Q Consensus       509 ~C~IC~~~~-------------~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR  545 (557)
                      .|.||++.-             ..+++.+|||. +-..|..+.    ..||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence            488887543             45577799999 899998743    7999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.73  E-value=0.042  Score=55.84  Aligned_cols=50  Identities=34%  Similarity=0.708  Sum_probs=37.6

Q ss_pred             HHHHHHHhcccccccccc---ccceEEecCCccccchhhhcCC-----CCCCCCccccc
Q psy2747         499 EEVRRLREARLCKICMDK---EVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIK  549 (557)
Q Consensus       499 ~~~~~~~~~~~C~IC~~~---~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~  549 (557)
                      +...+....-.|.|||+.   .-..+.+||.|. +=..|..+.     .+||+||.+|.
T Consensus       315 e~~~ea~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         315 ERAVEADKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             HhHHhcCCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence            334444445789999964   333778899999 788898875     69999999875

>KOG0802|consensus

Probab=92.46  E-value=0.053  Score=61.04  Aligned_cols=43  Identities=35%  Similarity=0.780  Sum_probs=36.9

Q ss_pred             Hhccccccccccccc-----eEEecCCccccchhhhcCC----CCCCCCcccc
Q psy2747         505 REARLCKICMDKEVG-----VVLLPCGHLVTCVLCASSL----PRCPVCRENI  548 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~-----~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i  548 (557)
                      .....|.||.+.-..     ...+||||. ++..|..+.    ..||+||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence            346789999998777     789999999 899999864    8999999944

>KOG1039|consensus

Probab=90.87  E-value=0.092  Score=55.32  Aligned_cols=46  Identities=26%  Similarity=0.599  Sum_probs=37.4

Q ss_pred             hccccccccccccceE-----E---ecCCccccchhhhcC-----------CCCCCCCccccccEE
Q psy2747         506 EARLCKICMDKEVGVV-----L---LPCGHLVTCVLCASS-----------LPRCPVCRENIKATV  552 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~-----~---~PCgH~~~C~~Ca~~-----------~~~CP~CR~~i~~~i  552 (557)
                      .+..|.|||+.....+     |   .+|.|. +|..|...           .+.||+||.+...++
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~  224 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN  224 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence            4678999998776666     5   679999 89999964           268999999887654

>KOG3002|consensus

Probab=89.57  E-value=0.18  Score=52.21  Aligned_cols=45  Identities=29%  Similarity=0.748  Sum_probs=36.3

Q ss_pred             HhccccccccccccceEEecC--CccccchhhhcC-CCCCCCCccccccE
Q psy2747         505 REARLCKICMDKEVGVVLLPC--GHLVTCVLCASS-LPRCPVCRENIKAT  551 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PC--gH~~~C~~Ca~~-~~~CP~CR~~i~~~  551 (557)
                      .+-..|.||++.-.--++- |  ||+ +|..|..+ ..+||.||.+|..+
T Consensus        46 ~~lleCPvC~~~l~~Pi~Q-C~nGHl-aCssC~~~~~~~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIFQ-CDNGHL-ACSSCRTKVSNKCPTCRLPIGNI   93 (299)
T ss_pred             hhhccCchhhccCccccee-cCCCcE-ehhhhhhhhcccCCccccccccH
Confidence            3456799999887777775 6  899 79999954 58999999999843

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=88.75  E-value=0.29  Score=39.82  Aligned_cols=44  Identities=23%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      +...|.|+.+--.+-|++|+||. ++..|....     ..||+|+.++..
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            46789999999999999999977 899988643     679999998875

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG4628|consensus

Probab=88.48  E-value=0.25  Score=51.93  Aligned_cols=43  Identities=33%  Similarity=0.833  Sum_probs=31.6

Q ss_pred             ccccccccc---ccceEEecCCccccchhhhcCC-----CCCCCCccccccE
Q psy2747         508 RLCKICMDK---EVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKAT  551 (557)
Q Consensus       508 ~~C~IC~~~---~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~~  551 (557)
                      ..|.||+|.   .--+.++||.|. +=..|....     ..||+|+..|...
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~  280 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD  280 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence            389999974   334566899999 455677654     4599999987653

>KOG4159|consensus

Probab=88.23  E-value=0.14  Score=55.12  Aligned_cols=45  Identities=31%  Similarity=0.775  Sum_probs=37.6

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcC----CCCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASS----LPRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~----~~~CP~CR~~i~~  550 (557)
                      ..+..|.||+..--..+..||||. +|..|..+    -..||.||..+..
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence            456789999998888888899999 89999543    3799999998875

>KOG2113|consensus

Probab=87.68  E-value=0.47  Score=48.66  Aligned_cols=51  Identities=14%  Similarity=-0.014  Sum_probs=44.5

Q ss_pred             HHhccccccccccccceEEecCCccccchhhhcCC--CCCCCCccccccEEEE
Q psy2747         504 LREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL--PRCPVCRENIKATVRT  554 (557)
Q Consensus       504 ~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~--~~CP~CR~~i~~~i~i  554 (557)
                      +...++|.+|-..-...++.||||..+|.+||..-  ..||.|...+-..++|
T Consensus       340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             chhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence            34567899999999999999999999999999843  7999999888777765

>KOG1814|consensus

Probab=86.73  E-value=0.36  Score=51.30  Aligned_cols=30  Identities=33%  Similarity=0.881  Sum_probs=26.0

Q ss_pred             ccccccccccccc---eEEecCCccccchhhhcC
Q psy2747         507 ARLCKICMDKEVG---VVLLPCGHLVTCVLCASS  537 (557)
Q Consensus       507 ~~~C~IC~~~~~~---~~~~PCgH~~~C~~Ca~~  537 (557)
                      ...|.||++....   ++|+||+|+ +|..|...
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kd  216 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKD  216 (445)
T ss_pred             cccceeeehhhcCcceeeecccchH-HHHHHHHH
Confidence            5689999998766   789999999 89999974

>KOG2932|consensus

Probab=84.83  E-value=0.22  Score=50.87  Aligned_cols=43  Identities=30%  Similarity=0.901  Sum_probs=32.0

Q ss_pred             ccccccccccceE--EecCCccccchhhhcCC--CCCCCCccccccEEE
Q psy2747         509 LCKICMDKEVGVV--LLPCGHLVTCVLCASSL--PRCPVCRENIKATVR  553 (557)
Q Consensus       509 ~C~IC~~~~~~~~--~~PCgH~~~C~~Ca~~~--~~CP~CR~~i~~~i~  553 (557)
                      .|.-| +.++-+.  ++||.|+ +|.+||..-  +.||.|-.+|..+-+
T Consensus        92 fCd~C-d~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~VqrIeq  138 (389)
T KOG2932|consen   92 FCDRC-DFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQRIEQ  138 (389)
T ss_pred             eeccc-CCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHHHHH
Confidence            46666 3444443  6899999 999999865  799999988876543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=83.73  E-value=0.3  Score=46.94  Aligned_cols=46  Identities=33%  Similarity=0.642  Sum_probs=37.8

Q ss_pred             ccccccccccccceEEecCCccccchhhhcCC----CCCCCCccccccEEE
Q psy2747         507 ARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVR  553 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i~  553 (557)
                      ...|.||...-..-|.--|||. +|..|+..-    .+|.+|.+...+...
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~  245 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFW  245 (259)
T ss_pred             ceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhcccee
Confidence            3589999988888888899999 899999753    799999887666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	557
3t6p_A	345	Iap Antagonist-Induced Conformational Change In Cia		5e-24
3t6p_A	345	Iap Antagonist-Induced Conformational Change In Cia		1e-14
1jd6_A	124	Crystal Structure Of Diap1-bir2/hid Complex Length		1e-22
3mup_A	122	Ciap1-Bir3 Domain In Complex With The Smac-Mimetic		4e-22
1qbh_A	101	Solution Structure Of A Baculoviral Inhibitor Of Ap		6e-22
4hy4_A	115	Crystal Structure Of Ciap1 Bir3 Bound To T3170284 L		4e-21
3d9t_A	97	Ciap1-Bir3 In Complex With N-Terminal Peptide From		6e-21
1tw6_A	133	Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER		9e-21
3uw4_A	92	Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152 Le		9e-21
2i3h_A	133	Structure Of An Ml-iap/xiap Chimera Bound To A 4-me		1e-20
3uw5_A	116	Crystal Structure Of The Bir Domain Of Mliap Bound		1e-20
1oxn_A	140	Structure And Function Analysis Of Peptide Antagoni		2e-20
2uvl_A	96	Human Bir3 Domain Of Baculoviral Inhibitor Of Apopt		3e-19
3hl5_A	95	Crystal Structure Of Xiap Bir3 With Cs3 Length = 95		4e-19
3f7g_A	140	Structure Of The Bir Domain From Ml-Iap Bound To A		6e-19
3clx_D	130	Crystal Structure Of Xiap Bir3 Domain In Complex Wi		4e-18
1g73_C	121	Crystal Structure Of Smac Bound To Xiap-Bir3 Domain		5e-18
4hy0_A	125	Crystal Structure Of Xiap Bir3 With T3256336 Length		5e-18
3eyl_A	122	Crystal Structure Of Xiap Bir3 Domain In Complex Wi		6e-18
2jk7_A	116	Xiap Bir3 Bound To A Smac Mimetic Length = 116		6e-18
1g3f_A	117	Nmr Structure Of A 9 Residue Peptide From SmacDIABL		6e-18
1f9x_A	120	Average Nmr Solution Structure Of The Bir-3 Domain		6e-18
2opz_A	109	Avpf Bound To Bir3-Xiap Length = 109		7e-18
2opy_A	106	Smac Mimic Bound To Bir3-Xiap Length = 106		8e-18
1nw9_A	98	Structure Of Caspase-9 In An Inhibitory Complex Wit		8e-18
2vsl_A	96	Crystal Structure Of Xiap Bir3 With A Bivalent Smac		9e-18
1xb0_A	108	Structure Of The Bir Domain Of Iap-Like Protein 2 L		1e-17
3siq_A	136	Crystal Structure Of Autoinhibited Diap1-Bir1 Domai		1e-15
3siq_A	136	Crystal Structure Of Autoinhibited Diap1-Bir1 Domai		2e-08
3eb5_A	74	Structure Of The Ciap2 Ring Domain Length = 74		1e-15
3sip_E	115	Crystal Structure Of Drice And Diap1-Bir1 Complex L		1e-15
3sip_E	115	Crystal Structure Of Drice And Diap1-Bir1 Complex L		3e-08
1sdz_A	116	Crystal Structure Of Diap1 Bir1 Bound To A Reaper P		1e-15
1sdz_A	116	Crystal Structure Of Diap1 Bir1 Bound To A Reaper P		3e-08
1c9q_A	117	Average Nmr Solution Structure Of The Bir-2 Domain		5e-15
1i3o_E	121	Crystal Structure Of The Complex Of Xiap-Bir2 And C		5e-15
1i4o_C	141	Crystal Structure Of The XiapCASPASE-7 Complex Leng		5e-15
1kmc_C	119	Crystal Structure Of The Caspase-7 XIAP-Bir2 Comple		1e-14
1i51_E	117	Crystal Structure Of Caspase-7 Complexed With Xiap		1e-14
2qra_D	111	Crystal Structure Of Xiap Bir1 Domain (p21 Form) Le		6e-14
2qra_D	111	Crystal Structure Of Xiap Bir1 Domain (p21 Form) Le		6e-14
2qra_D	111	Crystal Structure Of Xiap Bir1 Domain (p21 Form) Le		2e-12
2qra_D	111	Crystal Structure Of Xiap Bir1 Domain (p21 Form) Le		9e-10
2poi_A	94	Crystal Structure Of Xiap Bir1 Domain (I222 Form) L		8e-14
2poi_A	94	Crystal Structure Of Xiap Bir1 Domain (I222 Form) L		8e-14
2poi_A	94	Crystal Structure Of Xiap Bir1 Domain (I222 Form) L		2e-12
2poi_A	94	Crystal Structure Of Xiap Bir1 Domain (I222 Form) L		8e-10
2pop_B	95	The Crystal Structure Of Tab1 And Bir1 Complex Leng		8e-14
2pop_B	95	The Crystal Structure Of Tab1 And Bir1 Complex Leng		8e-14
2pop_B	95	The Crystal Structure Of Tab1 And Bir1 Complex Leng		2e-12
2pop_B	95	The Crystal Structure Of Tab1 And Bir1 Complex Leng		8e-10
3m1d_A	85	Structure Of Bir1 From Ciap1 Length = 85		2e-13
3m1d_A	85	Structure Of Bir1 From Ciap1 Length = 85		2e-13
3m1d_A	85	Structure Of Bir1 From Ciap1 Length = 85		2e-09
3m0a_D	75	Crystal Structure Of Traf2:ciap2 Complex Length = 7		2e-12
3m0a_D	75	Crystal Structure Of Traf2:ciap2 Complex Length = 7		2e-12
3m0a_D	75	Crystal Structure Of Traf2:ciap2 Complex Length = 7		1e-09
3m0a_D	75	Crystal Structure Of Traf2:ciap2 Complex Length = 7		2e-09
2vm5_A	106	Human Bir2 Domain Of Baculoviral Inhibitor Of Apopt		3e-12
4auq_B	62	Structure Of Birc7-Ubch5b-Ub Complex. Length = 62		1e-10
2ecg_A	75	Solution Structure Of The Ring Domain Of The Baculo		7e-10
4ic2_A	74	Crystal Structure Of The Xiap Ring Domain Length =		7e-10
4ic3_A	74	Crystal Structure Of The F495l Mutant Xiap Ring Dom		3e-09
1m4m_A	140	Mouse Survivin Length = 140		3e-08
1m4m_A	140	Mouse Survivin Length = 140		1e-05
3uee_A	146	Crystal Structure Of Human Survivin K62a Mutant Bou		4e-07
3uee_A	146	Crystal Structure Of Human Survivin K62a Mutant Bou		7e-05
1xox_A	117	Solution Structure Of Human Survivin Length = 117		4e-07
1xox_A	117	Solution Structure Of Human Survivin Length = 117		3e-04
3uei_A	146	Crystal Structure Of Human Survivin E65a Mutant Len		4e-07
3uei_A	146	Crystal Structure Of Human Survivin E65a Mutant Len		2e-04
2rax_A	123	Crystal Structure Of Borealin (20-78) Bound To Surv		5e-07
2rax_A	123	Crystal Structure Of Borealin (20-78) Bound To Surv		2e-04
1f3h_A	142	X-Ray Crystal Structure Of The Human Anti-Apoptotic		5e-07
1f3h_A	142	X-Ray Crystal Structure Of The Human Anti-Apoptotic		1e-04
2raw_A	145	Crystal Structure Of The Borealin-survivin Complex		6e-07
2raw_A	145	Crystal Structure Of The Borealin-survivin Complex		1e-04
3uec_A	146	Crystal Structure Of Human Survivin Bound To Histon		7e-07
3uec_A	146	Crystal Structure Of Human Survivin Bound To Histon		1e-04
3uig_A	143	Crystal Structure Of Human Survivin In Complex With		7e-07
3uig_A	143	Crystal Structure Of Human Survivin In Complex With		1e-04
1e31_A	142	Survivin Dimer H. Sapiens Length = 142		7e-07
1e31_A	142	Survivin Dimer H. Sapiens Length = 142		1e-04
3ueh_A	146	Crystal Structure Of Human Survivin H80a Mutant Len		1e-06
3ueh_A	146	Crystal Structure Of Human Survivin H80a Mutant Len		1e-04
3uij_A	143	Crystal Structure Of Human Survivin K62yH80W MUTANT		1e-06
3uij_A	143	Crystal Structure Of Human Survivin K62yH80W MUTANT		1e-05
2yhn_A	79	The Idol-Ube2d Complex Mediates Sterol-Dependent De		3e-06

>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345

Iteration: 1
 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 67/99 (67%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           ++ T  +R+ TF  WP   P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW 
Sbjct: 2   SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61
Query: 452 EHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTP 490
           EHA+WFP C F++ +KG++F+++     P + +++  TP
Sbjct: 62  EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTP 100

>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 38/48 (79%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
           CK+CMDKEV VV +PCGHLV C  CA SL +CP+CR  IK TVRTFLS
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345

>pdb|1JD6|A Chain A, Crystal Structure Of Diap1-bir2/hid Complex Length = 124

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
           P++P  +   +R+ TF  WPR+    P  LA AGFFY G GD VRCF C GGL  W   D
Sbjct: 18  PQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDND 77
Query: 448 EPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDE 485
           EPW +HA W  +C FV L+KG+ +I DT+ A P + +E
Sbjct: 78  EPWEQHALWLSQCRFVKLMKGQLYI-DTVAAKPVLAEE 114

>pdb|3MUP|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic Compound Smac037 Length = 122

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 66/98 (67%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           ++ T  +R+ TF  WP   P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW 
Sbjct: 16  SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 75
Query: 452 EHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFT 489
           EHA+WFP C F++ +KG++F+++     P + +++  T
Sbjct: 76  EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLST 113

>pdb|1QBH|A Chain A, Solution Structure Of A Baculoviral Inhibitor Of Apoptosis (Iap) Repeat Length = 101

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 66/98 (67%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           ++ T  +R+ TF  WP   P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW 
Sbjct: 3   HMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 62
Query: 452 EHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFT 489
           EHA+WFP C F++ +KG++F+++     P + +++  T
Sbjct: 63  EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLST 100

>pdb|4HY4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3170284 Length = 115

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 11/103 (10%)
Query: 372 QGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWV 431
           QG   + +L +Q H            +R+ TF  WP   P+ P+ LA AGF+Y G+ D V
Sbjct: 19  QGGSSISNLSMQTHA-----------ARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDV 67
Query: 432 RCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIED 474
           +CF CDGGLR W + D+PW EHA+WFP C F++ +KG++F+++
Sbjct: 68  KCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDE 110

>pdb|3D9T|A Chain A, Ciap1-Bir3 In Complex With N-Terminal Peptide From Caspase- 9 (Atpfqe) Length = 97

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 60/83 (72%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           ++ T  +R+ TF  WP   P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW 
Sbjct: 10  SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 69
Query: 452 EHARWFPECHFVMLVKGEQFIED 474
           EHA+WFP C F++ +KG++F+++
Sbjct: 70  EHAKWFPRCEFLIRMKGQEFVDE 92

>pdb|1TW6|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE DERIVED From Smac Length = 133

Iteration: 1
 Score = 98.6 bits (244), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 58/89 (65%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
           R P  P + + + R+ +F  WP  + + P+ LA AGFF+ G  D VRCF C GGL+ W  
Sbjct: 38  RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 97
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFIED 474
            D+PW+EHA+WFP C F++  KG+++I +
Sbjct: 98  GDDPWTEHAKWFPGCQFLLRSKGQEYINN 126

>pdb|3UW4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152 Length = 92

Iteration: 1
 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 59/83 (71%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           ++ T  +R+ TF  WP   P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW 
Sbjct: 3   HMQTHAARMRTFMYWPSSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 62
Query: 452 EHARWFPECHFVMLVKGEQFIED 474
           EHA+WFP C F++ +KG+++I +
Sbjct: 63  EHAKWFPGCEFLIRMKGQEYINN 85

>pdb|2I3H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer Peptide (avpw) Length = 133

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 58/89 (65%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
           R P  P + + + R+ +F  WP  + + P+ LA AGFF+ G  D VRCF C GGL+ W  
Sbjct: 38  RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 97
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFIED 474
            D+PW+EHA+WFP C F++  KG+++I +
Sbjct: 98  GDDPWTEHAKWFPGCQFLLRSKGQEYINN 126

>pdb|3UW5|A Chain A, Crystal Structure Of The Bir Domain Of Mliap Bound To Gdc0152 Length = 116

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 58/89 (65%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
           R P  P + + + R+ +F  WP  + + P+ LA AGFF+ G  D VRCF C GGL+ W  
Sbjct: 21  RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 80
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFIED 474
            D+PW+EHA+WFP C F++  KG+++I +
Sbjct: 81  GDDPWTEHAKWFPGCQFLLRSKGQEYINN 109

>pdb|1OXN|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of Melanoma Inhibitor Of Apoptosis (Ml-Iap) Length = 140

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/87 (44%), Positives = 55/87 (63%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
           R P  P + + + R+ +F  WP  + + P+ LA AGFF+ G  D VRCF C GGL+ W  
Sbjct: 38  RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 97
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFI 472
            D+PW+EHA+WFP C F++  KG  F+
Sbjct: 98  GDDPWTEHAKWFPSCQFLLRSKGRDFV 124

>pdb|2UVL|A Chain A, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis Repeat-Containing 3 (Birc3) Length = 96

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           ++ T  +R  TF  WP    + P+ LA AGF+Y G  D V+CF CDGGLR W + D+PW 
Sbjct: 10  SMQTHAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWV 69
Query: 452 EHARWFPECHFVMLVKGEQFIEDT 475
           +HA+WFP C +++ +KG++FI   
Sbjct: 70  QHAKWFPRCEYLIRIKGQEFIRQV 93

>pdb|3HL5|A Chain A, Crystal Structure Of Xiap Bir3 With Cs3 Length = 95

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 384 NHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKW 443
           +H +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W
Sbjct: 2   SHMLPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDW 59
Query: 444 TAMDEPWSEHARWFPECHFVMLVKGEQFIED 474
              ++PW +HA+W+P C +++  KG+++I +
Sbjct: 60  KPSEDPWEQHAKWYPGCKYLLEQKGQEYINN 90

>pdb|3F7G|A Chain A, Structure Of The Bir Domain From Ml-Iap Bound To A Peptidomimetic Length = 140

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
           R P  P + + + R+ +F  WP  + + P+ LA AGFF+ G  D VRCF C GGL+ W  
Sbjct: 38  RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 97
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFIEDTIKAN 479
            D+PW+EHA+WFP C F++  KG  F+    + +
Sbjct: 98  GDDPWTEHAKWFPSCQFLLRSKGRDFVHSVQETH 131

>pdb|3CLX|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A Smac-Mimetic Compound, Smac005 Length = 130

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 30  LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 87
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 88  EDPWEQHAKWYPGCKYLLEQKGQEYINN 115

>pdb|1G73|C Chain C, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain Length = 121

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 19  LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 76
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 77  EDPWEQHAKWYPGCKYLLEQKGQEYINN 104

>pdb|4HY0|A Chain A, Crystal Structure Of Xiap Bir3 With T3256336 Length = 125

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 24  LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 81
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 82  EDPWEQHAKWYPGCKYLLEQKGQEYINN 109

>pdb|3EYL|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A Smac-Mimetic Compound Length = 122

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 16  LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 73
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 74  EDPWEQHAKWYPGCKYLLEQKGQEYINN 101

>pdb|2JK7|A Chain A, Xiap Bir3 Bound To A Smac Mimetic Length = 116

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 16  LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 73
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 74  EDPWEQHAKWYPGCKYLLEQKGQEYINN 101

>pdb|1G3F|A Chain A, Nmr Structure Of A 9 Residue Peptide From SmacDIABLO Complexed To The Bir3 Domain Of Xiap Length = 117

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 17  LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 74
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 75  EDPWEQHAKWYPGCKYLLEQKGQEYINN 102

>pdb|1F9X|A Chain A, Average Nmr Solution Structure Of The Bir-3 Domain Of Xiap Length = 120

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 20  LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 77
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 78  EDPWEQHAKWYPGCKYLLEQKGQEYINN 105

>pdb|2OPZ|A Chain A, Avpf Bound To Bir3-Xiap Length = 109

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 8   LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 65
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 66  EDPWEQHAKWYPGCKYLLEQKGQEYINN 93

>pdb|2OPY|A Chain A, Smac Mimic Bound To Bir3-Xiap Length = 106

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 8   LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 65
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 66  EDPWEQHAKWYPGCKYLLEQKGQEYINN 93

>pdb|1NW9|A Chain A, Structure Of Caspase-9 In An Inhibitory Complex With Xiap- Bir3 Length = 98

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 4   LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 61
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 62  EDPWEQHAKWYPGCKYLLEQKGQEYINN 89

>pdb|2VSL|A Chain A, Crystal Structure Of Xiap Bir3 With A Bivalent Smac Mimetic Length = 96

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W   
Sbjct: 7   LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 64
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG+++I +
Sbjct: 65  EDPWEQHAKWYPGCKYLLEQKGQEYINN 92

>pdb|1XB0|A Chain A, Structure Of The Bir Domain Of Iap-Like Protein 2 Length = 108

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +P++P+++  ++R++TF TW     +  + LA AGF+  GQ D V+CFHC GGL  W   
Sbjct: 8   LPRNPSMTGYEARLITFGTWMYS--VNKEQLARAGFYAIGQEDKVQCFHCGGGLANWKPK 65
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
           ++PW +HA+W+P C +++  KG ++I +
Sbjct: 66  EDPWEQHAKWYPGCKYLLEEKGHEYINN 93

>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain Length = 136

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
           E  RL TF +WP+ ++     LA+TG Y+   GDKVKC +C V IG WEQ D    EH+R
Sbjct: 37  EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQR 95
Query: 287 QSPNCPFLARDNQATQANMINLRALD 312
            SPNCP L R  + T    IN  ALD
Sbjct: 96  WSPNCPLLRR--RTTNNVPINAEALD 119

>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           +L+  ++R+ TFT WP D  L  + LA  G ++   GD V+CF C   +  W   D+P  
Sbjct: 33  DLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 91
Query: 452 EHARWFPECHFV 463
           EH RW P C  +
Sbjct: 92  EHQRWSPNCPLL 103

>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
           CK+CMDKEV +V +PCGHLV C  CA SL +CP+CR  IK TVRTFLS
Sbjct: 27  CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 74

>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex Length = 115

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
           E  RL TF +WP+ ++     LA+TG Y+   GDKVKC +C V IG WEQ D    EH+R
Sbjct: 14  EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQR 72
Query: 287 QSPNCPFLARDNQATQANMINLRALD 312
            SPNCP L R  + T    IN  ALD
Sbjct: 73  WSPNCPLLRR--RTTNNVPINAEALD 96

>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex Length = 115

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           +L+  ++R+ TFT WP D  L  + LA  G ++   GD V+CF C   +  W   D+P  
Sbjct: 10  DLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 68
Query: 452 EHARWFPECHFV 463
           EH RW P C  +
Sbjct: 69  EHQRWSPNCPLL 80

>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide Length = 116

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
           E  RL TF +WP+ ++     LA+TG Y+   GDKVKC +C V IG WEQ D    EH+R
Sbjct: 15  EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQR 73
Query: 287 QSPNCPFLARDNQATQANMINLRALD 312
            SPNCP L R  + T    IN  ALD
Sbjct: 74  WSPNCPLLRR--RTTNNVPINAEALD 97

>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide Length = 116

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           +L+  ++R+ TFT WP D  L  + LA  G ++   GD V+CF C   +  W   D+P  
Sbjct: 11  DLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 69
Query: 452 EHARWFPECHFV 463
           EH RW P C  +
Sbjct: 70  EHQRWSPNCPLL 81

>pdb|1C9Q|A Chain A, Average Nmr Solution Structure Of The Bir-2 Domain Of Xiap Length = 117

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
           P++P + + ++R+ +F  WP  + L P+ LA AG +Y G GD V+CF C G L+ W   D
Sbjct: 32  PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGD 91
Query: 448 EPWSEHARWFPECHFVM 464
             WSEH R FP C FV+
Sbjct: 92  RAWSEHRRHFPNCFFVL 108

>pdb|1I3O|E Chain E, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase 3 Length = 121

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
           P++P + + ++R+ +F  WP  + L P+ LA AG +Y G GD V+CF C G L+ W   D
Sbjct: 36  PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGD 95
Query: 448 EPWSEHARWFPECHFVM 464
             WSEH R FP C FV+
Sbjct: 96  RAWSEHRRHFPNCFFVL 112

>pdb|1I4O|C Chain C, Crystal Structure Of The XiapCASPASE-7 Complex Length = 141

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
           P++P + + ++R+ +F  WP  + L P+ LA AG +Y G GD V+CF C G L+ W   D
Sbjct: 36  PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCD 95
Query: 448 EPWSEHARWFPECHFVM 464
             WSEH R FP C FV+
Sbjct: 96  RAWSEHRRHFPNCFFVL 112

>pdb|1KMC|C Chain C, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex Length = 119

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
           P++P +   ++R+ +F  WP  + L P+ LA AG +Y G GD V+CF C G L+ W   D
Sbjct: 32  PRNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCD 91
Query: 448 EPWSEHARWFPECHFVM 464
             WSEH R FP C FV+
Sbjct: 92  RAWSEHRRHFPNCFFVL 108

>pdb|1I51|E Chain E, Crystal Structure Of Caspase-7 Complexed With Xiap Length = 117

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
           P++P +   ++R+ +F  WP  + L P+ LA AG +Y G GD V+CF C G L+ W   D
Sbjct: 32  PRNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCD 91
Query: 448 EPWSEHARWFPECHFVM 464
             WSEH R FP C FV+
Sbjct: 92  RAWSEHRRHFPNCFFVL 108

>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form) Length = 111

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 4   ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
           E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +HR 
Sbjct: 38  EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 97
Query: 64  KDPGCPFV 71
             P C F+
Sbjct: 98  VSPNCRFI 105

>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form) Length = 111

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 140 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 199
           E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +HR 
Sbjct: 38  EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 97
Query: 200 KDPGCPFV 207
             P C F+
Sbjct: 98  VSPNCRFI 105

>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form) Length = 111

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 218 IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQG 277
           I  EE +  E  RL TF N+P    V+   LA+ GF Y  +GD V+C  C   + RW+ G
Sbjct: 29  INKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYG 88
Query: 278 DNAESEHKRQSPNCPFL 294
           D+A   H++ SPNC F+
Sbjct: 89  DSAVGRHRKVSPNCRFI 105

>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form) Length = 111

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 398 SRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWF 457
           +R+ TF  +P  SP+   +LA AGF Y G+GD VRCF C   + +W   D     H +  
Sbjct: 40  NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 99
Query: 458 PECHFV 463
           P C F+
Sbjct: 100 PNCRFI 105

>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form) Length = 94

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 4  ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
          E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +HR 
Sbjct: 21 EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80
Query: 64 KDPGCPFV 71
            P C F+
Sbjct: 81 VSPNCRFI 88

>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form) Length = 94

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 140 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 199
           E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +HR 
Sbjct: 21  EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80
Query: 200 KDPGCPFV 207
             P C F+
Sbjct: 81  VSPNCRFI 88

>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form) Length = 94

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 218 IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQG 277
           I  EE +  E  RL TF N+P    V+   LA+ GF Y  +GD V+C  C   + RW+ G
Sbjct: 12  INKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYG 71
Query: 278 DNAESEHKRQSPNCPFL 294
           D+A   H++ SPNC F+
Sbjct: 72  DSAVGRHRKVSPNCRFI 88

>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form) Length = 94

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 398 SRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWF 457
           +R+ TF  +P  SP+   +LA AGF Y G+GD VRCF C   + +W   D     H +  
Sbjct: 23  NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 82
Query: 458 PECHFV 463
           P C F+
Sbjct: 83  PNCRFI 88

>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex Length = 95

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 4  ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
          E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +HR 
Sbjct: 21 EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80
Query: 64 KDPGCPFV 71
            P C F+
Sbjct: 81 VSPNCRFI 88

>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex Length = 95

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 140 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 199
           E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +HR 
Sbjct: 21  EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80
Query: 200 KDPGCPFV 207
             P C F+
Sbjct: 81  VSPNCRFI 88

>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex Length = 95

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 218 IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQG 277
           I  EE +  E  RL TF N+P    V+   LA+ GF Y  +GD V+C  C   + RW+ G
Sbjct: 12  INKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYG 71
Query: 278 DNAESEHKRQSPNCPFL 294
           D+A   H++ SPNC F+
Sbjct: 72  DSAVGRHRKVSPNCRFI 88

>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex Length = 95

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 398 SRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWF 457
           +R+ TF  +P  SP+   +LA AGF Y G+GD VRCF C   + +W   D     H +  
Sbjct: 23  NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 82
Query: 458 PECHFV 463
           P C F+
Sbjct: 83  PNCRFI 88

>pdb|3M1D|A Chain A, Structure Of Bir1 From Ciap1 Length = 85

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 4  ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
          E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS + KH+ 
Sbjct: 12 ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQ 71
Query: 64 KDPGCPFVKN 73
            P C F++N
Sbjct: 72 LYPSCSFIQN 81

>pdb|3M1D|A Chain A, Structure Of Bir1 From Ciap1 Length = 85

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 140 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 199
           E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS + KH+ 
Sbjct: 12  ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQ 71
Query: 200 KDPGCPFVKN 209
             P C F++N
Sbjct: 72  LYPSCSFIQN 81

>pdb|3M1D|A Chain A, Structure Of Bir1 From Ciap1 Length = 85

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 399 RVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFP 458
           R+ T++T+P   P+  +SLA AGF+Y G  D V+CF C   L  W   D P  +H + +P
Sbjct: 15  RMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYP 74
Query: 459 ECHFV 463
            C F+
Sbjct: 75  SCSFI 79

>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex Length = 75

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          ++ E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS   K
Sbjct: 2  LSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEK 61
Query: 61 HRAKDPGCPFVKN 73
          H+   P C FV++
Sbjct: 62 HKKLYPSCRFVQS 74

>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex Length = 75

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           ++ E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS   K
Sbjct: 2   LSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEK 61
Query: 197 HRAKDPGCPFVKN 209
           H+   P C FV++
Sbjct: 62  HKKLYPSCRFVQS 74

>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex Length = 75

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
           E  R++T++ +P    V+  +LA+ GFYY    DKVKC  C +++  W++GD+   +HK+
Sbjct: 5   ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEKHKK 64
Query: 287 QSPNCPFL 294
             P+C F+
Sbjct: 65  LYPSCRFV 72

>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex Length = 75

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 399 RVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFP 458
           R+ T++T+P   P+  +SLA AGF+Y G  D V+CF C   L  W   D P  +H + +P
Sbjct: 8   RMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEKHKKLYP 67
Query: 459 ECHFV 463
            C FV
Sbjct: 68  SCRFV 72

>pdb|2VM5|A Chain A, Human Bir2 Domain Of Baculoviral Inhibitor Of Apoptosis Repeat-Containing 1 (Birc1) Length = 106

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 397 DSRVLTFTTWP-RDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHAR 455
           ++R+ +F  WP     + P  L+ AGF + G+ D V+CF C G L  W   D+PW EHA+
Sbjct: 22  EARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHAK 81
Query: 456 WFPECHFVMLVKGEQFIEDTIKA 478
           WFP+C F+   K  + I   I++
Sbjct: 82  WFPKCEFLRSKKSSEEITQYIQS 104

>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex. Length = 62

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
           CK+C+D+ V +V +PCGHLV C  CA  L  CP+CR  +++ VRTFLS
Sbjct: 16  CKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPVRSRVRTFLS 62

>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap Repeat-Containing Protein 4 From Homo Sapiens Length = 75

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
           CKICMD+ + +V +PCGHLVTC  CA ++ +CP+C   I    + F+S
Sbjct: 28  CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75

>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain Length = 74

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
           CKICMD+ + +V +PCGHLVTC  CA ++ +CP+C   I    + F+S
Sbjct: 27  CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 74

>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain Length = 74

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
           CKICMD+ + +V +PCGHLVTC  CA ++ +CP+C   I    +  +S
Sbjct: 27  CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74

>pdb|1M4M|A Chain A, Mouse Survivin Length = 140

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L++ R+ATF NWP       TPE +A+ GF +     + D  +C +C   +  WE  DN 
Sbjct: 14  LKNYRIATFKNWPFLEDCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDNP 73
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EH++ SP C FL    Q  +  +     LD
Sbjct: 74  IEEHRKHSPGCAFLTVKKQMEELTVSEFLKLD 105

>pdb|1M4M|A Chain A, Mouse Survivin Length = 140

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 387 VPKHPNLSTLDSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLR 441
           +P+   L   + R+ TF  WP   D    P+ +A AGF +   + + D  +CF C   L 
Sbjct: 6   LPQIWQLYLKNYRIATFKNWPFLEDCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 65
Query: 442 KWTAMDEPWSEHARWFPECHFVMLVK 467
            W   D P  EH +  P C F+ + K
Sbjct: 66  GWEPDDNPIEEHRKHSPGCAFLTVKK 91

>pdb|3UEE|A Chain A, Crystal Structure Of Human Survivin K62a Mutant Bound To N-Terminal Histone H3 Length = 146

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 18  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFAELEGWEPDDDP 77
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 78  IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 109

>pdb|3UEE|A Chain A, Crystal Structure Of Human Survivin K62a Mutant Bound To N-Terminal Histone H3 Length = 146

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 20  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFAELEGWEPDDDPIE 79
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 80  EHKKHSSGCAFLSVKK--QFEELTL 102

>pdb|1XOX|A Chain A, Solution Structure Of Human Survivin Length = 117

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 14  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 74  IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 105

>pdb|1XOX|A Chain A, Solution Structure Of Human Survivin Length = 117

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 16  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 75
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 76  EHKKHSSGCAFLSVKK--QFEELTL 98

>pdb|3UEI|A Chain A, Crystal Structure Of Human Survivin E65a Mutant Length = 146

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 18  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELAGWEPDDDP 77
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 78  IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 109

>pdb|3UEI|A Chain A, Crystal Structure Of Human Survivin E65a Mutant Length = 146

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 20  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELAGWEPDDDPIE 79
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 80  EHKKHSSGCAFLSVKK--QFEELTL 102

>pdb|2RAX|A Chain A, Crystal Structure Of Borealin (20-78) Bound To Survivin (1-120) Length = 123

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 17  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 76
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 77  IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 108

>pdb|2RAX|A Chain A, Crystal Structure Of Borealin (20-78) Bound To Survivin (1-120) Length = 123

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 19  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 78
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 79  EHKKHSSGCAFLSVKK--QFEELTL 101

>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic Protein Survivin Length = 142

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 14  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCFFCFKELEGWEPDDDP 73
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 74  IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 105

>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic Protein Survivin Length = 142

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 16  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCFFCFKELEGWEPDDDPIE 75
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 76  EHKKHSSGCAFLSVKK--QFEELTL 98

>pdb|2RAW|A Chain A, Crystal Structure Of The Borealin-survivin Complex Length = 145

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 17  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 76
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 77  IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 108

>pdb|2RAW|A Chain A, Crystal Structure Of The Borealin-survivin Complex Length = 145

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 19  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 78
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 79  EHKKHSSGCAFLSVKK--QFEELTL 101

>pdb|3UEC|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3 Phosphorylated On Threonine-3. Length = 146

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 18  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 77
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 78  IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 109

>pdb|3UEC|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3 Phosphorylated On Threonine-3. Length = 146

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 20  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 79
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 80  EHKKHSSGCAFLSVKK--QFEELTL 102

>pdb|3UIG|A Chain A, Crystal Structure Of Human Survivin In Complex With T3 Phosphorylated H3(1-15) Peptide Length = 143

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 15  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 74
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 75  IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 106

>pdb|3UIG|A Chain A, Crystal Structure Of Human Survivin In Complex With T3 Phosphorylated H3(1-15) Peptide Length = 143

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 17  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 76
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 77  EHKKHSSGCAFLSVKK--QFEELTL 99

>pdb|1E31|A Chain A, Survivin Dimer H. Sapiens Length = 142

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 14  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 74  IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 105

>pdb|1E31|A Chain A, Survivin Dimer H. Sapiens Length = 142

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 16  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 75
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 76  EHKKHSSGCAFLSVKK--QFEELTL 98

>pdb|3UEH|A Chain A, Crystal Structure Of Human Survivin H80a Mutant Length = 146

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 18  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 77
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 78  IEEHKKASSGCAFLSVKKQFEELTLGEFLKLD 109

>pdb|3UEH|A Chain A, Crystal Structure Of Human Survivin H80a Mutant Length = 146

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 20  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 79
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +    C F+ + K  QF E T+
Sbjct: 80  EHKKASSGCAFLSVKK--QFEELTL 102

>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN COMPLEX WITH SmacDIABLO(1-15) Peptide Length = 143

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
           L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D+ 
Sbjct: 15  LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYELEGWEPDDDP 74
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
             EHK+ S  C FL+   Q  +  +     LD
Sbjct: 75  IEEHKKWSSGCAFLSVKKQFEELTLGEFLKLD 106

>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN COMPLEX WITH SmacDIABLO(1-15) Peptide Length = 143

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  W   D+P  
Sbjct: 17  DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYELEGWEPDDDPIE 76
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
           EH +W   C F+ + K  QF E T+
Sbjct: 77  EHKKWSSGCAFLSVKK--QFEELTL 99

>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFL 556
           C +C ++E+     PCGH V C  CA+ L  CPVCR  ++     +L
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYL 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	557
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	8e-48
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	3e-29
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	3e-20
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	1e-18
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	3e-36
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	2e-24
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	9e-22
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	3e-21
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	1e-08
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	3e-36
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	4e-24
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	2e-21
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	2e-21
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	7e-09
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	2e-35
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	7e-25
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	1e-21
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	2e-21
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	7e-09
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	7e-35
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	4e-24
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	6e-20
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	6e-20
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	1e-09
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	5e-34
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	3e-23
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	7e-20
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	7e-20
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	3e-07
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	5e-34
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	4e-23
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	1e-19
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	1e-19
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	2e-07
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	1e-31
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	3e-22
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	1e-18
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	1e-18
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	3e-07
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	9e-31
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	3e-24
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	8e-22
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	8e-22
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	6e-09
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	2e-30
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	1e-25
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	2e-22
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	2e-22
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	8e-09
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	1e-29
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	4e-25
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	4e-23
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	4e-23
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	1e-08
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	2e-29
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	4e-26
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	7e-22
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	7e-22
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	3e-09
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	3e-29
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	6e-24
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	1e-18
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	1e-18
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	2e-27
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	1e-25
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	2e-21
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	2e-21
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	5e-08
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	4e-27
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	4e-27
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	5e-27
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	9e-26
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	4e-21
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	5e-21
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	1e-07
2ea5_A	68	Cell growth regulator with ring finger domain prot	9e-20
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	3e-15
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	9e-15
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	7e-08
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	3e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-05
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	3e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	5e-05
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	6e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	8e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-04
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-04
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-04
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-04
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	8e-04

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score =  169 bits (427), Expect = 8e-48
 Identities = 91/343 (26%), Positives = 127/343 (37%), Gaps = 9/343 (2%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
            +  + R+ TF  WP S  V PE LA  GFYY+ + D VKC  C   +  WE GD+   E
Sbjct: 3   MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVE 62

Query: 284 HKRQSPNCPFLAR---DNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKL 340
           H +  P C FL R        +        L+      P +       +          +
Sbjct: 63  HAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTPPIIHYGPGESSSEDAVMMNTPV 122

Query: 341 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGV--QNHRVPKHPNLSTLDS 398
               L    N  +        +  TG  Y    D     L    +     K      + S
Sbjct: 123 VKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLNAEDEKREEEKEKQAEEMAS 182

Query: 399 RVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEH----A 454
             L+     R +     +  +       + + +     D   +K     +          
Sbjct: 183 DDLSLIRKNRMALFQQLTCVLPILDNLLKANVINKQEHDIIKQKTQIPLQARELIDTILV 242

Query: 455 RWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLREARLCKICM 514
           +     +       E               +   T      SLEE++RRL+E R CK+CM
Sbjct: 243 KGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCM 302

Query: 515 DKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
           DKEV VV +PCGHLV C  CA SL +CP+CR  IK TVRTFLS
Sbjct: 303 DKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score =  117 bits (293), Expect = 3e-29
 Identities = 43/99 (43%), Positives = 67/99 (67%)

Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           ++ T  +R+ TF  WP   P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW 
Sbjct: 2   SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61

Query: 452 EHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTP 490
           EHA+WFP C F++ +KG++F+++     P + +++  TP
Sbjct: 62  EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTP 100

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 91.6 bits (225), Expect = 3e-20
 Identities = 44/318 (13%), Positives = 82/318 (25%), Gaps = 22/318 (6%)

Query: 1   MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
           M    +R+RTF  WPS+ PV  +++A AGF+Y G   +V+CF+C   +  W   D    +
Sbjct: 3   MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVE 62

Query: 61  HRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYL 120
           H    P C F+   +    V         L    L+T          +            
Sbjct: 63  HAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTPPIIHYGPGESSS---------- 112

Query: 121 KQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFAC 180
                         +     +S L    +          +I   G  Y      V     
Sbjct: 113 ---------EDAVMMNTPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLN 163

Query: 181 GVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 240
                     +    +  + D              ++     +  L    +         
Sbjct: 164 AEDEKREEEKEKQAEEMASDDLSLIRKNRMALFQQLTCVLPILDNLLKANVINKQEHD-- 221

Query: 241 FIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQA 300
            I+  +         L     VK    + I     +  ++                    
Sbjct: 222 -IIKQKTQIPLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDV 280

Query: 301 TQANMINLRALDAKDPGC 318
           +  ++        ++  C
Sbjct: 281 SGLSLEEQLRRLQEERTC 298

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 86.6 bits (212), Expect = 1e-18
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 136 TMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMA 195
           +M    +R+RTF  WPS+ PV  +++A AGF+Y G   +V+CF+C   +  W   D    
Sbjct: 2   SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61

Query: 196 KHRAKDPGCPFVK 208
           +H    P C F+ 
Sbjct: 62  EHAKWFPRCEFLI 74

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB: 3oz1_A* Length = 122

 Score =  130 bits (328), Expect = 3e-36
 Identities = 41/100 (41%), Positives = 66/100 (66%)

Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
             + ++ T  +R+ TF  WP   P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D
Sbjct: 12  ISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGD 71

Query: 448 EPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVF 487
           +PW EHA+WFP C F++ +KG++F+++     P + +++ 
Sbjct: 72  DPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLL 111

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB: 3oz1_A* Length = 122

 Score = 97.8 bits (243), Expect = 2e-24
 Identities = 30/71 (42%), Positives = 38/71 (53%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
            +  + R+ TF  WP S  V PE LA  GFYY+ + D VKC  C   +  WE GD+   E
Sbjct: 17  MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 76

Query: 284 HKRQSPNCPFL 294
           H +  P C FL
Sbjct: 77  HAKWFPRCEFL 87

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB: 3oz1_A* Length = 122

 Score = 90.1 bits (223), Expect = 9e-22
 Identities = 27/85 (31%), Positives = 43/85 (50%)

Query: 124 DKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVK 183
             +    S  +++M    +R+RTF  WPS+ PV  +++A AGF+Y G   +V+CF C   
Sbjct: 4   SLETLRFSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGG 63

Query: 184 ISNWTYNDSVMAKHRAKDPGCPFVK 208
           +  W   D    +H    P C F+ 
Sbjct: 64  LRCWESGDDPWVEHAKWFPRCEFLI 88

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB: 3oz1_A* Length = 122

 Score = 88.5 bits (219), Expect = 3e-21
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          M    +R+RTF  WPS+ PV  +++A AGF+Y G   +V+CF C   +  W   D    +
Sbjct: 17 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 76

Query: 61 HRAKDPGCPFVK 72
          H    P C F+ 
Sbjct: 77 HAKWFPRCEFLI 88

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB: 3oz1_A* Length = 122

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
            +  + R+ TF  WP S  V PE LA  GFYY+ + D 
Sbjct: 17  MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDD 54

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A Length = 124

 Score =  130 bits (328), Expect = 3e-36
 Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 375 KDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCF 434
           +  R      +  P++P  +   +R+ TF  WPR+    P  LA AGFFY G GD VRCF
Sbjct: 5   ETCRPSAASGNYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCF 64

Query: 435 HCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDE 485
            C GGL  W   DEPW +HA W  +C FV L+KG+ +I DT+ A P + +E
Sbjct: 65  SCGGGLMDWNDNDEPWEQHALWLSQCRFVKLMKGQLYI-DTVAAKPVLAEE 114

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A Length = 124

 Score = 96.6 bits (240), Expect = 4e-24
 Identities = 24/71 (33%), Positives = 34/71 (47%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
           Y +E+ RL TF  WP +    P  LA+ GF+Y   GD+V+C  C   +  W   D    +
Sbjct: 23  YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 82

Query: 284 HKRQSPNCPFL 294
           H      C F+
Sbjct: 83  HALWLSQCRFV 93

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A Length = 124

 Score = 88.9 bits (220), Expect = 2e-21
 Identities = 30/72 (41%), Positives = 41/72 (56%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
             E +RLRTF++WP N      ++A+AGFFYTG    V+CF+CG  + +W  ND    +
Sbjct: 23 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 82

Query: 61 HRAKDPGCPFVK 72
          H      C FVK
Sbjct: 83 HALWLSQCRFVK 94

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A Length = 124

 Score = 88.9 bits (220), Expect = 2e-21
 Identities = 30/72 (41%), Positives = 41/72 (56%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
              E +RLRTF++WP N      ++A+AGFFYTG    V+CF+CG  + +W  ND    +
Sbjct: 23  YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 82

Query: 197 HRAKDPGCPFVK 208
           H      C FVK
Sbjct: 83  HALWLSQCRFVK 94

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A Length = 124

 Score = 53.0 bits (127), Expect = 7e-09
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 374
           Y +E+ RL TF  WP +    P  LA+ GF+Y   GD
Sbjct: 23  YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGD 59

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A Length = 97

 Score =  127 bits (321), Expect = 2e-35
 Identities = 40/87 (45%), Positives = 61/87 (70%)

Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
             + ++ T  +R+ TF  WP   P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D
Sbjct: 6   ISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGD 65

Query: 448 EPWSEHARWFPECHFVMLVKGEQFIED 474
           +PW EHA+WFP C F++ +KG++F+++
Sbjct: 66  DPWVEHAKWFPRCEFLIRMKGQEFVDE 92

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A Length = 97

 Score = 98.0 bits (244), Expect = 7e-25
 Identities = 30/71 (42%), Positives = 38/71 (53%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
            +  + R+ TF  WP S  V PE LA  GFYY+ + D VKC  C   +  WE GD+   E
Sbjct: 11  MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 70

Query: 284 HKRQSPNCPFL 294
           H +  P C FL
Sbjct: 71  HAKWFPRCEFL 81

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A Length = 97

 Score = 88.8 bits (220), Expect = 1e-21
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 131 SFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYN 190
           S  +++M    +R+RTF  WPS+ PV  +++A AGF+Y G   +V+CF C   +  W   
Sbjct: 5   SISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESG 64

Query: 191 DSVMAKHRAKDPGCPFVK 208
           D    +H    P C F+ 
Sbjct: 65  DDPWVEHAKWFPRCEFLI 82

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A Length = 97

 Score = 88.4 bits (219), Expect = 2e-21
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          M    +R+RTF  WPS+ PV  +++A AGF+Y G   +V+CF C   +  W   D    +
Sbjct: 11 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 70

Query: 61 HRAKDPGCPFVK 72
          H    P C F+ 
Sbjct: 71 HAKWFPRCEFLI 82

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A Length = 97

 Score = 52.6 bits (126), Expect = 7e-09
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
            +  + R+ TF  WP S  V PE LA  GFYY+ + D 
Sbjct: 11  MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDD 48

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A* Length = 133

 Score =  127 bits (319), Expect = 7e-35
 Identities = 41/107 (38%), Positives = 65/107 (60%)

Query: 368 YYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQ 427
           + L+  +++    G    R P  P + + + R+ +F  WP  + + P+ LA AGFF+ G 
Sbjct: 20  HMLETEEEEEEGAGATLSRGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGH 79

Query: 428 GDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIED 474
            D VRCF C GGL+ W   D+PW+EHA+WFP C F++  KG+++I +
Sbjct: 80  QDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQEYINN 126

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A* Length = 133

 Score = 97.0 bits (241), Expect = 4e-24
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
              E  RLA+F +WP++  V PE LA  GF++    DKV+C +C   +  W++GD+  +E
Sbjct: 45  MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104

Query: 284 HKRQSPNCPFL 294
           H +  P C FL
Sbjct: 105 HAKWFPGCQFL 115

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A* Length = 133

 Score = 85.1 bits (210), Expect = 6e-20
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 1   MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
           M  E  RL +F  WP  + V  + +A AGFF+TGHQ +V+CF C   + +W   D    +
Sbjct: 45  MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104

Query: 61  HRAKDPGCPFVK 72
           H    PGC F+ 
Sbjct: 105 HAKWFPGCQFLL 116

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A* Length = 133

 Score = 85.1 bits (210), Expect = 6e-20
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           M  E  RL +F  WP  + V  + +A AGFF+TGHQ +V+CF C   + +W   D    +
Sbjct: 45  MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104

Query: 197 HRAKDPGCPFVK 208
           H    PGC F+ 
Sbjct: 105 HAKWFPGCQFLL 116

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A* Length = 133

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 280 AESEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYK 339
             S H     +            ++M+     + +  G    + P   G           
Sbjct: 2   GSSHHHHHHSSGEV------PRGSHMLETEEEEEEGAGATLSRGPAFPG---------MG 46

Query: 340 LESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
            E  RLA+F +WP++  V PE LA  GF++    DK
Sbjct: 47  SEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDK 82

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens} Length = 106

 Score =  123 bits (311), Expect = 5e-34
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 388 PKHPNLSTLDSRVLTFTTWPRDSP-LGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
                    ++R+ +F  WP     + P  L+ AGF + G+ D V+CF C G L  W   
Sbjct: 13  GGKMRYQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEG 72

Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIEDTIK 477
           D+PW EHA+WFP+C F+   K  + I   I+
Sbjct: 73  DDPWKEHAKWFPKCEFLRSKKSSEEITQYIQ 103

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens} Length = 106

 Score = 93.8 bits (233), Expect = 3e-23
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 224 YKLESGRLATFNNWPVSF-IVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAES 282
           Y+ E  RLA+F NWP     ++P  L++ GF +  + D V+C  C   +G WE+GD+   
Sbjct: 18  YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77

Query: 283 EHKRQSPNCPFL 294
           EH +  P C FL
Sbjct: 78  EHAKWFPKCEFL 89

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens} Length = 106

 Score = 84.2 bits (208), Expect = 7e-20
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MNFERSRLRTFQSWPSNSP-VSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMA 59
             E +RL +F++WP     +S   +++AGF +TG Q  VQCF+CG  + NW   D    
Sbjct: 18 YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77

Query: 60 KHRAKDPGCPFVKN 73
          +H    P C F+++
Sbjct: 78 EHAKWFPKCEFLRS 91

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens} Length = 106

 Score = 84.2 bits (208), Expect = 7e-20
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 137 MNFERSRLRTFQSWPSNSP-VSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMA 195
              E +RL +F++WP     +S   +++AGF +TG Q  VQCF+CG  + NW   D    
Sbjct: 18  YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77

Query: 196 KHRAKDPGCPFVKN 209
           +H    P C F+++
Sbjct: 78  EHAKWFPKCEFLRS 91

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens} Length = 106

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 338 YKLESGRLATFNNWPVSF-IVTPEALAKTGFYYLKQGD 374
           Y+ E  RLA+F NWP     ++P  L++ GF +  + D
Sbjct: 18  YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQD 55

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Length = 95

 Score =  123 bits (310), Expect = 5e-34
 Identities = 35/90 (38%), Positives = 61/90 (67%), Gaps = 2/90 (2%)

Query: 385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWT 444
           H +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W 
Sbjct: 3   HMLPRNPSMADYEARIFTFGTWI--YSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 60

Query: 445 AMDEPWSEHARWFPECHFVMLVKGEQFIED 474
             ++PW +HA+W+P C +++  KG+++I +
Sbjct: 61  PSEDPWEQHAKWYPGCKYLLEQKGQEYINN 90

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Length = 95

 Score = 92.6 bits (230), Expect = 4e-23
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
                 R+ TF  W  S  V  E LA+ GFY L +GDKVKC +C   +  W+  ++   +
Sbjct: 11  MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 68

Query: 284 HKRQSPNCPFL 294
           H +  P C +L
Sbjct: 69  HAKWYPGCKYL 79

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Length = 95

 Score = 83.0 bits (205), Expect = 1e-19
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          M    +R+ TF +W     V+ +++A+AGF+  G   +V+CF CG  +++W  ++    +
Sbjct: 11 MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 68

Query: 61 HRAKDPGCPFVKN 73
          H    PGC ++  
Sbjct: 69 HAKWYPGCKYLLE 81

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Length = 95

 Score = 83.0 bits (205), Expect = 1e-19
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           M    +R+ TF +W     V+ +++A+AGF+  G   +V+CF CG  +++W  ++    +
Sbjct: 11  MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 68

Query: 197 HRAKDPGCPFVKN 209
           H    PGC ++  
Sbjct: 69  HAKWYPGCKYLLE 81

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Length = 95

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 374
                 R+ TF  W  S  V  E LA+ GFY L +GD
Sbjct: 11  MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGD 45

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Length = 121

 Score =  117 bits (294), Expect = 1e-31
 Identities = 34/90 (37%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWT 444
             +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W 
Sbjct: 17  TNLPRNPSMADYEARIFTFGTWI--YSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 74

Query: 445 AMDEPWSEHARWFPECHFVMLVKGEQFIED 474
             ++PW +HA+W+P C +++  KG+++I +
Sbjct: 75  PSEDPWEQHAKWYPGCKYLLEQKGQEYINN 104

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Length = 121

 Score = 91.2 bits (226), Expect = 3e-22
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
                 R+ TF  W  S  V  E LA+ GFY L +GDKVKC +C   +  W+  ++   +
Sbjct: 25  MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 82

Query: 284 HKRQSPNCPFL 294
           H +  P C +L
Sbjct: 83  HAKWYPGCKYL 93

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Length = 121

 Score = 81.2 bits (200), Expect = 1e-18
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          M    +R+ TF +W     V+ +++A+AGF+  G   +V+CF CG  +++W  ++    +
Sbjct: 25 MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 82

Query: 61 HRAKDPGCPFVKN 73
          H    PGC ++  
Sbjct: 83 HAKWYPGCKYLLE 95

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Length = 121

 Score = 81.2 bits (200), Expect = 1e-18
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           M    +R+ TF +W     V+ +++A+AGF+  G   +V+CF CG  +++W  ++    +
Sbjct: 25  MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 82

Query: 197 HRAKDPGCPFVKN 209
           H    PGC ++  
Sbjct: 83  HAKWYPGCKYLLE 95

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Length = 121

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
                 R+ TF  W  S  V  E LA+ GFY L +GDK
Sbjct: 25  MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDK 60

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A Length = 141

 Score =  115 bits (290), Expect = 9e-31
 Identities = 35/100 (35%), Positives = 53/100 (53%)

Query: 382 VQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLR 441
           + +   P++P + + ++R+ +F  WP  + L P+ LA AG +Y G GD V+CF C G L+
Sbjct: 30  ISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLK 89

Query: 442 KWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPP 481
            W   D  WSEH R FP C FV+        E    ++  
Sbjct: 90  NWEPCDRAWSEHRRHFPNCFFVLGRNLNIRSESDAVSSDR 129

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A Length = 141

 Score = 97.5 bits (242), Expect = 3e-24
 Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 197 HRAKDPGCPFVKNPEASGNVSIENEEV------YKLESGRLATFNNWPVSFIVTPEALAK 250
                P          +G V   ++ +         E  RL +F NWP    +TP  LA 
Sbjct: 8   FALDRPSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELAS 67

Query: 251 TGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFL 294
            G YY   GD+V+C  C   +  WE  D A SEH+R  PNC F+
Sbjct: 68  AGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 111

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A Length = 141

 Score = 90.9 bits (225), Expect = 8e-22
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 1   MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
           M  E +RL++FQ+WP  + ++ + +A AG +YTG   +VQCF CG K+ NW   D   ++
Sbjct: 41  MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSE 100

Query: 61  HRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 104
           HR   P C FV     +     +           +++  N+P S
Sbjct: 101 HRRHFPNCFFVLGRNLNIRSESD----------AVSSDRNFPNS 134

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A Length = 141

 Score = 90.9 bits (225), Expect = 8e-22
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           M  E +RL++FQ+WP  + ++ + +A AG +YTG   +VQCF CG K+ NW   D   ++
Sbjct: 41  MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSE 100

Query: 197 HRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 240
           HR   P C FV     +     +           +++  N+P S
Sbjct: 101 HRRHFPNCFFVLGRNLNIRSESD----------AVSSDRNFPNS 134

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A Length = 141

 Score = 54.0 bits (129), Expect = 6e-09
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 307 NLRALDAKDPGCPFVKNPEASGNVSIENEEV------YKLESGRLATFNNWPVSFIVTPE 360
           +        P          +G V   ++ +         E  RL +F NWP    +TP 
Sbjct: 4   SRDHFALDRPSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPR 63

Query: 361 ALAKTGFYYLKQGD 374
            LA  G YY   GD
Sbjct: 64  ELASAGLYYTGIGD 77

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Length = 94

 Score =  113 bits (283), Expect = 2e-30
 Identities = 27/79 (34%), Positives = 38/79 (48%)

Query: 385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWT 444
             + K        +R+ TF  +P  SP+   +LA AGF Y G+GD VRCF C   + +W 
Sbjct: 10  ADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQ 69

Query: 445 AMDEPWSEHARWFPECHFV 463
             D     H +  P C F+
Sbjct: 70  YGDSAVGRHRKVSPNCRFI 88

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Length = 94

 Score = 99.6 bits (248), Expect = 1e-25
 Identities = 31/75 (41%), Positives = 43/75 (57%)

Query: 220 NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDN 279
            EE +  E  RL TF N+P    V+   LA+ GF Y  +GD V+C  C   + RW+ GD+
Sbjct: 14  KEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDS 73

Query: 280 AESEHKRQSPNCPFL 294
           A   H++ SPNC F+
Sbjct: 74  AVGRHRKVSPNCRFI 88

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Length = 94

 Score = 90.7 bits (225), Expect = 2e-22
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
             E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +
Sbjct: 18 FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGR 77

Query: 61 HRAKDPGCPFVKN 73
          HR   P C F+  
Sbjct: 78 HRKVSPNCRFING 90

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Length = 94

 Score = 90.7 bits (225), Expect = 2e-22
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
              E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +
Sbjct: 18  FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGR 77

Query: 197 HRAKDPGCPFVKN 209
           HR   P C F+  
Sbjct: 78  HRKVSPNCRFING 90

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Length = 94

 Score = 52.2 bits (125), Expect = 8e-09
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 334 NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
            EE +  E  RL TF N+P    V+   LA+ GF Y  +GD 
Sbjct: 14  KEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDT 55

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Length = 85

 Score =  111 bits (278), Expect = 1e-29
 Identities = 27/77 (35%), Positives = 41/77 (53%)

Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
           +    + S    R+ T++T+P   P+  +SLA AGF+Y G  D V+CF C   L  W   
Sbjct: 3   LGSKYDFSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLG 62

Query: 447 DEPWSEHARWFPECHFV 463
           D P  +H + +P C F+
Sbjct: 63  DSPIQKHKQLYPSCSFI 79

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Length = 85

 Score = 98.0 bits (244), Expect = 4e-25
 Identities = 25/71 (35%), Positives = 43/71 (60%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
           +  E  R++T++ +P    V+  +LA+ GFYY    DKVKC  C +++  W+ GD+   +
Sbjct: 9   FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQK 68

Query: 284 HKRQSPNCPFL 294
           HK+  P+C F+
Sbjct: 69  HKQLYPSCSFI 79

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Length = 85

 Score = 92.6 bits (230), Expect = 4e-23
 Identities = 29/77 (37%), Positives = 49/77 (63%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
           + E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS + K
Sbjct: 9  FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQK 68

Query: 61 HRAKDPGCPFVKNPEAS 77
          H+   P C F++N  ++
Sbjct: 69 HKQLYPSCSFIQNLVSA 85

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Length = 85

 Score = 92.6 bits (230), Expect = 4e-23
 Identities = 29/77 (37%), Positives = 49/77 (63%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
            + E  R+ T+ ++P+  PVS + +A+AGF+YTG   +V+CF CG+ + NW   DS + K
Sbjct: 9   FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQK 68

Query: 197 HRAKDPGCPFVKNPEAS 213
           H+   P C F++N  ++
Sbjct: 69  HKQLYPSCSFIQNLVSA 85

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Length = 85

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 374
           +  E  R++T++ +P    V+  +LA+ GFYY    D
Sbjct: 9   FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVND 45

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Length = 111

 Score =  111 bits (278), Expect = 2e-29
 Identities = 27/79 (34%), Positives = 38/79 (48%)

Query: 385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWT 444
             + K        +R+ TF  +P  SP+   +LA AGF Y G+GD VRCF C   + +W 
Sbjct: 27  ADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQ 86

Query: 445 AMDEPWSEHARWFPECHFV 463
             D     H +  P C F+
Sbjct: 87  YGDSAVGRHRKVSPNCRFI 105

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Length = 111

 Score =  101 bits (253), Expect = 4e-26
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 197 HRAKDPGCPFVKNPEASGNVSIE--NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFY 254
           H          +       V  +   EE +  E  RL TF N+P    V+   LA+ GF 
Sbjct: 6   HHHHHSSGLVPRGSHMKTCVPADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFL 65

Query: 255 YLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFL 294
           Y  +GD V+C  C   + RW+ GD+A   H++ SPNC F+
Sbjct: 66  YTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFI 105

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Length = 111

 Score = 90.0 bits (223), Expect = 7e-22
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query: 1   MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
              E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +
Sbjct: 35  FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGR 94

Query: 61  HRAKDPGCPFVKN 73
           HR   P C F+  
Sbjct: 95  HRKVSPNCRFING 107

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Length = 111

 Score = 90.0 bits (223), Expect = 7e-22
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
              E +RL+TF ++PS SPVS+  +A+AGF YTG    V+CF+C   +  W Y DS + +
Sbjct: 35  FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGR 94

Query: 197 HRAKDPGCPFVKN 209
           HR   P C F+  
Sbjct: 95  HRKVSPNCRFING 107

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Length = 111

 Score = 53.8 bits (129), Expect = 3e-09
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 316 PGCPFVKNPEASGNVSIE--NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQG 373
                 +       V  +   EE +  E  RL TF N+P    V+   LA+ GF Y  +G
Sbjct: 11  SSGLVPRGSHMKTCVPADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEG 70

Query: 374 DK 375
           D 
Sbjct: 71  DT 72

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ... Length = 142

 Score =  111 bits (279), Expect = 3e-29
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 8/129 (6%)

Query: 387 VPKHPNLSTLDSRVLTFTTWP--RDSPLGPQSLAVAGFFYDG---QGDWVRCFHCDGGLR 441
           +P        D R+ TF  WP        P+ +A AGF +     + D  +CF C   L 
Sbjct: 6   LPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 65

Query: 442 KWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFF---VKSLE 498
            W   D+P  EH +    C F+ + K  + +                  K      K  E
Sbjct: 66  GWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFE 125

Query: 499 EEVRRLREA 507
           E  +++R A
Sbjct: 126 ETAKKVRRA 134

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ... Length = 142

 Score = 96.7 bits (240), Expect = 6e-24
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 5/131 (3%)

Query: 224 YKLESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGD 278
             L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D
Sbjct: 12  PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 71

Query: 279 NAESEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVY 338
           +   EHK+ S  C FL+   Q  +  +     LD +       K          E  +  
Sbjct: 72  DPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKV 131

Query: 339 KLESGRLATFN 349
           +    +LA  +
Sbjct: 132 RRAIEQLAAMD 142

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ... Length = 142

 Score = 81.7 bits (201), Expect = 1e-18
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 1   MNFERSRLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYND 55
              +  R+ TF++WP       + +R+A+AGF +   ++E    QCF C  ++  W  +D
Sbjct: 12  PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 71

Query: 56  SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 104
             + +H+    GC F+          +   E  KL+  R         +
Sbjct: 72  DPIEEHKKHSSGCAFLSV--KKQFEELTLGEFLKLDRERAKNKIAKETN 118

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ... Length = 142

 Score = 81.7 bits (201), Expect = 1e-18
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 137 MNFERSRLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYND 191
              +  R+ TF++WP       + +R+A+AGF +   ++E    QCF C  ++  W  +D
Sbjct: 12  PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 71

Query: 192 SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 240
             + +H+    GC F+          +   E  KL+  R         +
Sbjct: 72  DPIEEHKKHSSGCAFLSV--KKQFEELTLGEFLKLDRERAKNKIAKETN 118

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E Length = 116

 Score =  105 bits (263), Expect = 2e-27
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 383 QNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRK 442
            N    +  +L+  ++R+ TFT WP D     + LA  G ++   GD V+CF C   +  
Sbjct: 2   NNINKTRMNDLNREETRLKTFTDWPLDWLD-KRQLAQTGMYFTHAGDKVKCFFCGVEIGS 60

Query: 443 WTAMDEPWSEHARWFPECHFV 463
           W   D+P  EH RW P C  +
Sbjct: 61  WEQEDQPVPEHQRWSPNCPLL 81

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E Length = 116

 Score =  100 bits (250), Expect = 1e-25
 Identities = 35/71 (49%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
              E  RL TF +WP+ + +    LA+TG Y+   GDKVKC +C V IG WEQ D    E
Sbjct: 12  LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 70

Query: 284 HKRQSPNCPFL 294
           H+R SPNCP L
Sbjct: 71  HQRWSPNCPLL 81

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E Length = 116

 Score = 88.9 bits (220), Expect = 2e-21
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          +N E +RL+TF  WP +  +  +++A+ G ++T    +V+CF CGV+I +W   D  + +
Sbjct: 12 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 70

Query: 61 HRAKDPGCPFVKNPEASGNVSIENE 85
          H+   P CP ++    + NV I  E
Sbjct: 71 HQRWSPNCPLLRR-RTTNNVPINAE 94

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E Length = 116

 Score = 88.9 bits (220), Expect = 2e-21
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           +N E +RL+TF  WP +  +  +++A+ G ++T    +V+CF CGV+I +W   D  + +
Sbjct: 12  LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 70

Query: 197 HRAKDPGCPFVKNPEASGNVSIENE 221
           H+   P CP ++    + NV I  E
Sbjct: 71  HQRWSPNCPLLRR-RTTNNVPINAE 94

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E Length = 116

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
              E  RL TF +WP+ + +    LA+TG Y+   GDK
Sbjct: 12  LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDK 48

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score =  103 bits (258), Expect = 4e-27
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 494 VKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVR 553
            + L+E++R+L+EA LC +C ++E+     PCGH V C  CA+ L  CPVCR  ++    
Sbjct: 5   TRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQH 64

Query: 554 TFLS 557
            +L 
Sbjct: 65  VYLP 68

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score =  103 bits (258), Expect = 4e-27
 Identities = 31/63 (49%), Positives = 45/63 (71%)

Query: 495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRT 554
            S EE++RRL+E +LCKICMD+ + +V +PCGHLVTC  CA ++ +CP+C   I    + 
Sbjct: 13  ISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI 72

Query: 555 FLS 557
           F+S
Sbjct: 73  FMS 75

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster} Length = 136

 Score =  105 bits (263), Expect = 5e-27
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 379 DLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDG 438
            L   N    +  +L+  ++R+ TFT WP D     + LA  G ++   GD V+CF C  
Sbjct: 20  QLFKNNINKTRMNDLNREETRLKTFTDWPLDWLD-KRQLAQTGMYFTHAGDKVKCFFCGV 78

Query: 439 GLRKWTAMDEPWSEHARWFPECHFV 463
            +  W   D+P  EH RW P C  +
Sbjct: 79  EIGSWEQEDQPVPEHQRWSPNCPLL 103

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster} Length = 136

 Score =  101 bits (253), Expect = 9e-26
 Identities = 42/97 (43%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
              E  RL TF +WP+ + +    LA+TG Y+   GDKVKC +C V IG WEQ D    E
Sbjct: 34  LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 92

Query: 284 HKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPF 320
           H+R SPNCP L    + T    IN  ALD   P   +
Sbjct: 93  HQRWSPNCPLL--RRRTTNNVPINAEALDRILPPISY 127

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster} Length = 136

 Score = 88.6 bits (219), Expect = 4e-21
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 126 KYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKIS 185
           K  +   R   +N E +RL+TF  WP    +  +++A+ G ++T    +V+CF CGV+I 
Sbjct: 23  KNNINKTRMNDLNREETRLKTFTDWPL-DWLDKRQLAQTGMYFTHAGDKVKCFFCGVEIG 81

Query: 186 NWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENE 221
           +W   D  + +H+   P CP ++    + NV I  E
Sbjct: 82  SWEQEDQPVPEHQRWSPNCPLLRR-RTTNNVPINAE 116

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster} Length = 136

 Score = 88.6 bits (219), Expect = 5e-21
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 1   MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
           +N E +RL+TF  WP    +  +++A+ G ++T    +V+CF CGV+I +W   D  + +
Sbjct: 34  LNREETRLKTFTDWPL-DWLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 92

Query: 61  HRAKDPGCPFVKNPEASGNVSIENE 85
           H+   P CP ++    + NV I  E
Sbjct: 93  HQRWSPNCPLLRR-RTTNNVPINAE 116

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster} Length = 136

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
              E  RL TF +WP+ + +    LA+TG Y+   GDK
Sbjct: 34  LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDK 70

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 82.5 bits (204), Expect = 9e-20
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
            ++ C +C +  V  VLLPC H   C  C     +CP+CR+ ++ +      
Sbjct: 14  NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 69.5 bits (170), Expect = 3e-15
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 508 RLCKICMD--KEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVRTFLS 557
           + C +C    ++  ++    GHLVTC  CA  L      CP+C++ I+  ++ F++
Sbjct: 8   KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 67.9 bits (166), Expect = 9e-15
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 502 RRLREARLCKICMDKEVGVVLLP--CGHLVTCVLCASSLPR----CPVCRENIKATVRTF 555
             L     C IC  +     ++    GHL+ C  CA  L +    CPVCR+ I+  V T+
Sbjct: 3   LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

Query: 556 L 556
            
Sbjct: 63  F 63

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 53.6 bits (128), Expect = 7e-08
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIK 549
           +  E         +LCKIC + +  V + PCGHL+ C  C +S        CP CR  IK
Sbjct: 320 EQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 378

Query: 550 AT 551
            T
Sbjct: 379 GT 380

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 498 EEEVRRLREARLCKICMDKEVGVVLLPCGHL--VTCV---LCASSLPRCPVCRENIKAT 551
              V++L +   C ICMD     ++LPC H     C+           CP+CR  +   
Sbjct: 6   SGRVKQLTDEEECCICMDGRA-DLILPCAHSFCQKCIDKWSDRHR--NCPICRLQMTGA 61

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%)

Query: 493 FVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCREN 547
           FVK++E++         C+ C           CGH   C  C     +SS P+C  C+E+
Sbjct: 8   FVKTVEDKY-------KCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQES 59

Query: 548 IK 549
           I 
Sbjct: 60  IV 61

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENI 548
           C IC+   V  V LPC H V C LC         RC +CR+ I
Sbjct: 18  CAICLQTCVHPVSLPCKH-VFCYLCVKGASWLGKRCALCRQEI 59

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 498 EEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLP-RCPVCRE 546
           EEE + LR    C+ C  +     LLPC H   C  C  +   +CP+C+ 
Sbjct: 1   EEEFQFLR----CQQCQAEAKCPKLLPCLH-TLCSGCLEASGMQCPICQA 45

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 506 EARLCKICMDK-EVGVVLLPCGHLVTCVLC----ASSLPRCPVCRENIKATVRTFLS 557
            A  C IC++      + LPC H   C +C        P CP+C+  +++ V T  S
Sbjct: 4   VAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIES 59

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCRENIK 549
              +  + ++ E   C  C +     +   C H V C  C      + +  CP CR ++ 
Sbjct: 40  SPFQLFLSKVEETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLG 98

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIK 549
           + L      L     C IC +  +  V L C H   C  C +        CP+CR++IK
Sbjct: 52  EVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIK 109

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 11/48 (22%)

Query: 510 CKICMDK----EVGVVLLPCGHL--VTCV---LCASSLPRCPVCRENI 548
           C IC++      V   +LPCGHL   TC    L      RCP+C    
Sbjct: 8   CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY--RCPLCSGPS 53

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIK 549
           C IC       V+  C H   C  CA       PRC +C +   
Sbjct: 18  CFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTG 60

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 498 EEEVRRLREARLCKICMDKEVGVVLLP-CGHLVTCVLC-----ASSLPRCPVCRENIK 549
           E+ V  + E   C ICM+K     L P C  L  C  C          +CP CR  ++
Sbjct: 13  EQSVESIAEVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ 69

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 494 VKSLEEEVRRLREARLCKICMDK-EVG--VVLLPCGHL--VTCV---LCASSLPRCPVCR 545
           +K   EE         C IC+   E G  V  LPC HL    CV   L  +   +CP+CR
Sbjct: 1   MKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPICR 58

Query: 546 ENIKA 550
            +I+A
Sbjct: 59  VDIEA 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 82/632 (12%), Positives = 166/632 (26%), Gaps = 197/632 (31%)

Query: 35  HQHEVQCFACGVKISNWTYND--SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKL-- 90
           H H    F  G     + Y D  SV       +  C  V   +   ++ +  EE+  +  
Sbjct: 2   HHHHHMDFETGEH--QYQYKDILSVFEDAFVDNFDCKDV--QDMPKSI-LSKEEIDHIIM 56

Query: 91  ----ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKK-Y-FLIS-FRS-------IT 136
                SG L  F  W  + +   E + +    ++++  +  Y FL+S  ++       +T
Sbjct: 57  SKDAVSGTLRLF--W--TLLSKQEEMVQ---KFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAK----------------------AGFFYTGHQ-- 172
             +   R R +      +  +  R+                         G    G    
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTWV 166

Query: 173 -------HEVQC-FACGV---KISNWTYNDSVMAK-----HRAKDPGCPFVKNPEASGNV 216
                  ++VQC     +    + N    ++V+       ++       +    + S N+
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID---PNWTSRSDHSSNI 223

Query: 217 SIENEEVYKLESGRLATFNNWPVSFIV-----TPEALAKTGFYYLKQGDKVKC------A 265
            +    + + E  RL     +    +V       +A     F        + C       
Sbjct: 224 KLRIHSI-QAELRRLLKSKPYENCLLVLLNVQNAKAWNA--F-------NLSCKILLTTR 273

Query: 266 YCSVIIGRWEQGDNAESEHKRQSP-NCPFLARDNQATQANMINLRALD----AKDPGCPF 320
           +  V     +    A + H      +      + ++     ++ R  D          P 
Sbjct: 274 FKQVT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPR 328

Query: 321 V---------KNPEASGN--------------VSIEN------EEVYKLESGRLATFNN- 350
                            N               S+         +++     RL+ F   
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPS 384

Query: 351 -----------WPVSFIVTPEALAKTGFYY--LKQGDKDMR--DLGVQNHRVPKHPNLST 395
                      W          +      Y  +++  K+       +      K  N   
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 396 LDSRVLTFTTWPRDSP---LGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSE 452
           L   ++     P+      L P  L    +FY   G      H    L+      E  + 
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLD--QYFYSHIG-----HH----LKN-IEHPERMTL 492

Query: 453 HARWFPECHFVM----------------------LVKGEQFIEDTIKANPPITDEVFFTP 490
               F +  F+                       L   + +I D    N P  + +    
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD----NDPKYERLVNAI 548

Query: 491 KFFVKSLEEEVRRLREARLCKICMDKEVGVVL 522
             F+  +EE +   +   L +I +  E   + 
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 22/81 (27%)

Query: 478 ANPPITDEVFFTPKFFVKSLE-----EEVRRLREARLCKICMDK-EVG--VVLLPCGHL- 528
           ANPP         K  + +L      E+   + +   C IC  +   G     LPC H  
Sbjct: 13  ANPP-------ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYF 65

Query: 529 -VTCV---LCASSLPRCPVCR 545
              CV   L  S    CPVCR
Sbjct: 66  HKPCVSIWLQKSG--TCPVCR 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	557
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	100.0
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	99.94
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	99.94
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	99.94
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	99.94
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	99.94
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	99.94
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	99.93
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	99.93
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	99.93
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	99.93
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	99.93
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	99.93
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	99.93
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	99.93
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	99.92
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	99.92
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	99.92
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	99.92
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	99.92
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	99.92
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	99.91
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	99.91
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	99.91
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	99.91
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	99.91
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	99.91
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	99.91
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	99.9
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	99.86
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.46
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.43
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.34
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.33
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.32
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.3
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.26
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.21
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.2
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.2
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.17
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.1
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.09
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.01
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.0
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	97.99
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	97.98
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.96
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	97.95
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	97.94
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	97.93
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	97.91
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	97.89
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	97.87
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.87
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	97.87
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	97.86
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	97.85
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	97.84
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	97.83
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	97.82
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.82
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	97.82
1z6u_A	150	NP95-like ring finger protein isoform B; structura	97.81
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.78
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.77
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	97.76
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	97.74
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.73
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	97.73
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	97.62
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	97.6
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	97.56
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.54
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	97.5
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	97.5
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	97.49
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.34
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.33
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.3
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.26
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	96.98
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.82
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	96.67
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	96.66
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	96.61
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.57
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	96.56
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.21
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.05
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	95.34
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	95.15
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	95.09
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	94.88
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	92.38
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	88.97
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	81.44

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=100.00  E-value=5.4e-38  Score=326.73  Aligned_cols=312  Identities=29%  Similarity=0.447  Sum_probs=196.6

Q ss_pred             ccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccchhhh
Q psy2747         223 VYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQATQ  302 (557)
Q Consensus       223 ~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~~~~  302 (557)
                      .|.++++||+||.+||+...++|++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|+|+|++..||+.+
T Consensus         2 ~m~~~~~Rl~tF~~WP~~~~~~~~~lA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~f~~~~kg~~~   81 (345)
T 3t6p_A            2 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEF   81 (345)
T ss_dssp             TTSSHHHHHHHGGGSCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHHHHCHHH
T ss_pred             CCccHHHHHHHHhhCCCcccCCHHHHHhCCCeecCCCCeEEecCCCCCccCCCCCCCHHHHHHHhCCCCccHHHhccHHH
Confidence            58899999999999998877799999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhhhhhc--ccCCCCCC-CccCCCCCCCCcccchhhhhhhhcCccccccC------CCcccccchhhhhcccccccccC
Q psy2747         303 ANMINLRA--LDAKDPGC-PFVKNPEASGNVSIENEEVYKLESGRLATFNN------WPVSFIVTPEALAKTGFYYLKQG  373 (557)
Q Consensus       303 ~~~~~~~~--~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  373 (557)
                      .+.|....  +..+.+.. ++++..  .|.......   ..+.++.|..+.      ..+ +.++..++..+|..|..  
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~v~~~l~mGf~~~~v-~~~~~~~~~~~g~~~~~--  153 (345)
T 3t6p_A           82 VDEIQGRYPHLLEQLLSTPPIIHYG--PGESSSEDA---VMMNTPVVKSALEMGFNRDLV-KQTVQSKILTTGENYKT--  153 (345)
T ss_dssp             HHHHHHHSTTHHHHHHHC---------------CCC---GGGCSHHHHHHHHTTCCHHHH-HHHHHHHHHHHSSCCCS--
T ss_pred             HHHHHHhCcccccccccCccccccC--Cccchhhhh---hhhcCHHHHHHHHhcccHHHH-HHHHHHHHHhcCCCcCC--
Confidence            88776541  11000000 111100  010000000   011111111000      000 11223333333311100  


Q ss_pred             CccccccccccCCCCCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHH
Q psy2747         374 DKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEH  453 (557)
Q Consensus       374 ~~~~~~~~~~~~~~p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH  453 (557)
                         ++++-. .+  ....+=...+.+-..+..+-. ..++...+.+|+||..        +.|...|.+|...+.+|.++
T Consensus       154 ---~~~lv~-~~--l~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~ra~l~~~--------~~~v~pild~lle~~vis~~  218 (345)
T 3t6p_A          154 ---VNDIVS-AL--LNAEDEKREEEKEKQAEEMAS-DDLSLIRKNRMALFQQ--------LTCVLPILDNLLKANVINKQ  218 (345)
T ss_dssp             ---HHHHHH-HH--HHHHHHHHHHHHHHHHSCCCC-HHHHHHHHTHHHHHHH--------CCCCHHHHHHHHHTTSSCHH
T ss_pred             ---HHHHHH-HH--Hhcccccchhhhhhhhccccc-ccchHHHHHHHHHhhc--------cccccccccccccccccchh
Confidence               000000 00  000000000000111222211 1224567888998876        45778889999999999999


Q ss_pred             hhhcCCcchhhhhhhhhHHHhhhhcC---------------CCC--------CCCccCCCcccccChHHHHHHHHhcccc
Q psy2747         454 ARWFPECHFVMLVKGEQFIEDTIKAN---------------PPI--------TDEVFFTPKFFVKSLEEEVRRLREARLC  510 (557)
Q Consensus       454 ~~~~p~C~fv~~~kG~~fv~~v~~~~---------------~~~--------~~e~~~~~~~~~~~~~~~~~~~~~~~~C  510 (557)
                      .++.....+.....+.+.+..++...               +.+        +....+.......+++++++.+.+...|
T Consensus       219 e~dv~~~~~~~~~~~r~li~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~C  298 (345)
T 3t6p_A          219 EHDIIKQKTQIPLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTC  298 (345)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHTSCCCCCCCSSCGGGSCHHHHHHHHHTTCBC
T ss_pred             hhhhhhhHhhhHHHHHHHHHHHHHhhhhhHHHHHHHHhccchhhhhhhccccccccCCccccccccHHHHHHhCcCCCCC
Confidence            99988887766665554444332221               000        0000011123356788999999999999


Q ss_pred             ccccccccceEEecCCccccchhhhcCCCCCCCCccccccEEEEeeC
Q psy2747         511 KICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS  557 (557)
Q Consensus       511 ~IC~~~~~~~~~~PCgH~~~C~~Ca~~~~~CP~CR~~i~~~i~i~~s  557 (557)
                      .||++...+.+++||||.++|..|+..+..||+||.+|...++||+|
T Consensus       299 ~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s  345 (345)
T 3t6p_A          299 KVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS  345 (345)
T ss_dssp             TTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred             CccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence            99999999999999999999999999999999999999999999987

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*

Probab=99.94  E-value=4.2e-28  Score=216.60  Aligned_cols=96  Identities=41%  Similarity=0.942  Sum_probs=87.4

Q ss_pred             cCCCCCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchh
Q psy2747         384 NHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFV  463 (557)
Q Consensus       384 ~~~~p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv  463 (557)
                      ....|.+|+|.++++||+||.+||....+++++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|.|.|+
T Consensus        36 ~~~~~~~~~m~~e~~RL~SF~~WP~~~~~~pe~LA~AGFYYtg~~D~V~Cf~C~~~L~~We~~DDP~~EH~r~~P~C~Fv  115 (133)
T 2i3h_A           36 LSRGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFL  115 (133)
T ss_dssp             ---CCSCGGGCCHHHHHHTTTTCSCTTTSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHH
T ss_pred             cCCCCCchhhhCHHHHHHHHhcCCCCcCCCHHHHHHcCCCCcCCCCEEEecccCCEeCCCCCCCCHHHHHHHHCcCCcee
Confidence            34568999999999999999999987778899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHhhhhcC
Q psy2747         464 MLVKGEQFIEDTIKAN  479 (557)
Q Consensus       464 ~~~kG~~fv~~v~~~~  479 (557)
                      ++.||.+||++++...
T Consensus       116 ~~~Kg~~fv~~v~~~~  131 (133)
T 2i3h_A          116 LRSKGQEYINNIHLTH  131 (133)
T ss_dssp             HHHHCHHHHHHHC---
T ss_pred             hhcccHHHHHHHhhhC
Confidence            9999999999997654

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A

Probab=99.94  E-value=5.9e-28  Score=205.52  Aligned_cols=91  Identities=38%  Similarity=1.028  Sum_probs=86.4

Q ss_pred             CCCCCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchhh
Q psy2747         385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVM  464 (557)
Q Consensus       385 ~~~p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv~  464 (557)
                      +..|.+|.|.++++||+||.+||..  ++++.||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|.|.|++
T Consensus         3 ~~~p~~~~m~~~~~Rl~TF~~Wp~~--~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p~C~f~~   80 (95)
T 3hl5_A            3 HMLPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLL   80 (95)
T ss_dssp             CSSCSCGGGCSHHHHHHTTTTCCSS--SCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHH
T ss_pred             cCCCCCccccCHHHHHHHHcCCCCC--CCHHHHHhCCCeEcCCCCeEEecCCCCCccCcCCCCCHHHHHHHHCcCCcchH
Confidence            3468899999999999999999964  78999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHhhhh
Q psy2747         465 LVKGEQFIEDTIK  477 (557)
Q Consensus       465 ~~kG~~fv~~v~~  477 (557)
                      +.||.+||++|+.
T Consensus        81 ~~kg~~fv~~i~~   93 (95)
T 3hl5_A           81 EQKGQEYINNIHL   93 (95)
T ss_dssp             HHTCHHHHHHHTT
T ss_pred             hhccHHHHHHHHc
Confidence            9999999999865

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A

Probab=99.94  E-value=7e-28  Score=213.39  Aligned_cols=94  Identities=45%  Similarity=0.995  Sum_probs=89.4

Q ss_pred             cCCCCCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchh
Q psy2747         384 NHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFV  463 (557)
Q Consensus       384 ~~~~p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv  463 (557)
                      ....|.+|.|.++++||+||.+||...+++++.||+|||||+|.+|.|+||+||++|.+|+.+||||.||++|+|.|.|+
T Consensus        14 ~~~~p~~p~~~~e~~Rl~TF~~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv   93 (124)
T 1jd5_A           14 GNYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFV   93 (124)
T ss_dssp             CCCCCSCGGGCSHHHHHHHGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHH
T ss_pred             CCCCCCChhhhCHHHHHHHHhhCCCCccCCHHHHHHcCCCCcCCCCEEEecCCCCEecCCCCCCCHHHHHHHHCcCCcee
Confidence            45668999999999999999999988778899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHhhhh
Q psy2747         464 MLVKGEQFIEDTIK  477 (557)
Q Consensus       464 ~~~kG~~fv~~v~~  477 (557)
                      ++.||.+||++++.
T Consensus        94 ~~~kg~~fv~~v~~  107 (124)
T 1jd5_A           94 KLMKGQLYIDTVAA  107 (124)
T ss_dssp             HHHHCHHHHHHHHH
T ss_pred             ecccchHHHHHHHh
Confidence            99999999999865

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.1e-27  Score=207.31  Aligned_cols=94  Identities=34%  Similarity=0.767  Sum_probs=84.8

Q ss_pred             CCCCCCCCCcChHhHhhhccCCCCCCC-CChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchh
Q psy2747         385 HRVPKHPNLSTLDSRVLTFTTWPRDSP-LGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFV  463 (557)
Q Consensus       385 ~~~p~~p~~~~~~~Rl~Sf~~wp~~~~-~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv  463 (557)
                      ...|.++.|.++++||+||.+||.... +++++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|.|.|+
T Consensus        10 ~~~~~~~~~~~~~~Rl~TF~~WP~~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~Fv   89 (106)
T 2vm5_A           10 RLRGGKMRYQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPKCEFL   89 (106)
T ss_dssp             CCC---CTTSSHHHHHHGGGGCCGGGTTSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHHH
T ss_pred             CCCCCchhhcCHHHHHHHHhcCCCCcccCCHHHHHHcCCCCcCCCCEEEccccCCEecCCCCCCCHHHHHHHHCcCCcch
Confidence            345889999999999999999997654 7899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHhhhhc
Q psy2747         464 MLVKGEQFIEDTIKA  478 (557)
Q Consensus       464 ~~~kG~~fv~~v~~~  478 (557)
                      +..||.+||.+++..
T Consensus        90 ~~~Kg~~~i~~~~~~  104 (106)
T 2vm5_A           90 RSKKSSEEITQYIQS  104 (106)
T ss_dssp             HHHHCCTTSCCCCCC
T ss_pred             hhccCHHHHHHHHHh
Confidence            999999999887553

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B

Probab=99.94  E-value=3.5e-27  Score=199.91  Aligned_cols=74  Identities=42%  Similarity=0.894  Sum_probs=71.2

Q ss_pred             CcchHHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCcCC
Q psy2747           1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNP   74 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~~   74 (557)
                      |..|++||+||.+||...++++++||+|||||||.+|+|+||+||++|++|+++||||++|++++|+|+|++..
T Consensus        18 ~~~e~~Rl~TF~~WP~~~~~~p~~LA~AGFyytg~~D~V~Cf~C~~~l~~We~~DdP~~eH~r~~P~C~Fv~~~   91 (94)
T 2poi_A           18 FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGF   91 (94)
T ss_dssp             TTSHHHHHGGGTTCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTTTTTT
T ss_pred             hhCHHHHHHHHhcCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCcccccc
Confidence            88999999999999998789999999999999999999999999999999999999999999999999999753

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*

Probab=99.94  E-value=2.6e-27  Score=209.59  Aligned_cols=96  Identities=43%  Similarity=0.977  Sum_probs=90.4

Q ss_pred             CCCCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchhhh
Q psy2747         386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVML  465 (557)
Q Consensus       386 ~~p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv~~  465 (557)
                      ..+.++.|.++++|++||.+||....+++++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|.|.|+++
T Consensus        10 ~~~~~~~m~s~~~Rl~TF~~WP~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv~~   89 (122)
T 3mup_A           10 FSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIR   89 (122)
T ss_dssp             -CCSCGGGCSHHHHHHGGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHH
T ss_pred             cCcCCccccCHHHHHHHHhcCCCcccCCHHHHHHCCCeEeCCCCeEEecCcCCEecCCCCCCCHHHHHHHHCcCCcchhh
Confidence            35778899999999999999998877899999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHhhhhcCCC
Q psy2747         466 VKGEQFIEDTIKANPP  481 (557)
Q Consensus       466 ~kG~~fv~~v~~~~~~  481 (557)
                      .||.+||++|+...+.
T Consensus        90 ~kg~~fi~~i~~~~~~  105 (122)
T 3mup_A           90 MKGQEFVDEIQGRYPH  105 (122)
T ss_dssp             HHCHHHHHHHHHHCTT
T ss_pred             cCcHHHHHHHHHhchh
Confidence            9999999999887765

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A

Probab=99.93  E-value=3.9e-27  Score=201.32  Aligned_cols=91  Identities=44%  Similarity=1.027  Sum_probs=84.6

Q ss_pred             CCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchhhhhh
Q psy2747         388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVK  467 (557)
Q Consensus       388 p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv~~~k  467 (557)
                      ..+..|.++++||+||.+||...++++++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|.|.|+++.|
T Consensus         6 ~~~~~m~~~~~Rl~TF~~Wp~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p~C~f~~~~k   85 (97)
T 3d9t_A            6 ISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMK   85 (97)
T ss_dssp             --CGGGCSHHHHHHGGGGCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHHHHHHH
T ss_pred             ccchhhhCHHHHHHHHhcCCCcccCCHHHHHHcCCCCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHhCccChhhHhhc
Confidence            34667899999999999999877788999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhhhc
Q psy2747         468 GEQFIEDTIKA  478 (557)
Q Consensus       468 G~~fv~~v~~~  478 (557)
                      |++||++++..
T Consensus        86 g~~~v~~~~~~   96 (97)
T 3d9t_A           86 GQEFVDEIQGR   96 (97)
T ss_dssp             CHHHHHHHTTC
T ss_pred             cHHHHHHHHhc
Confidence            99999998653

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A

Probab=99.93  E-value=7.4e-27  Score=206.60  Aligned_cols=94  Identities=36%  Similarity=0.988  Sum_probs=85.9

Q ss_pred             CCCCCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchhh
Q psy2747         385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVM  464 (557)
Q Consensus       385 ~~~p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv~  464 (557)
                      ...|.+|.|.++++||+||.+||..  +++++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|.|.|++
T Consensus        17 ~~~p~~~~m~~~~~Rl~TF~~Wp~~--~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~P~C~Fv~   94 (121)
T 1g73_C           17 TNLPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLL   94 (121)
T ss_dssp             --CCSCGGGCSHHHHHHTTTTCCSS--SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHHHH
T ss_pred             CCCCCChhhhCHHHHHHHHccCCCC--CCHHHHHHcCCCCcCCCCEEEcCcCCCCcCCCCCCCCHHHHHHHHCcCCcchh
Confidence            3568999999999999999999975  78999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHhhhhcCC
Q psy2747         465 LVKGEQFIEDTIKANP  480 (557)
Q Consensus       465 ~~kG~~fv~~v~~~~~  480 (557)
                      ..||.+||++++...|
T Consensus        95 ~~kg~~~v~~v~~~~p  110 (121)
T 1g73_C           95 EQKGQEYINNIHLTHS  110 (121)
T ss_dssp             HHHHHHHHHHHTC---
T ss_pred             hccchhhhccccccCC
Confidence            9999999999976554

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}

Probab=99.93  E-value=1.2e-26  Score=201.44  Aligned_cols=74  Identities=42%  Similarity=0.894  Sum_probs=71.2

Q ss_pred             CcchHHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCcCC
Q psy2747           1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNP   74 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~~   74 (557)
                      |..|++||+||.+||...++++++||+|||||||.+|+|+||+||++|++|+++||||+||++++|+|+|++..
T Consensus        35 m~~e~~RL~TF~~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~sP~C~Fv~~~  108 (111)
T 2qra_D           35 FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGF  108 (111)
T ss_dssp             TTSHHHHHHTTTTCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTTTTTT
T ss_pred             hhCHHHHHHHHhcCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCcchhhc
Confidence            78999999999999998789999999999999999999999999999999999999999999999999999753

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D

Probab=99.93  E-value=4.8e-27  Score=195.71  Aligned_cols=73  Identities=40%  Similarity=0.937  Sum_probs=70.4

Q ss_pred             CcchHHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCcC
Q psy2747           1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKN   73 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~   73 (557)
                      |..|++||+||.+||...+++++.||+|||||||.+|+|+||+|+++|++|+++|||+++|++++|+|+|+++
T Consensus         9 ~~~e~~Rl~TF~~WP~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~F~~~   81 (85)
T 3m1d_A            9 FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCSFIQN   81 (85)
T ss_dssp             HHHHHHHHHGGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECSCCTTCCHHHHHHHHCTTCHHHHH
T ss_pred             hHhHHHHHHHHhcCCCCCcCCHHHHHHCCCeEeCCCCEEEeCCcCCEecCCCCCCCHHHHHHHHCccCcchhc
Confidence            6789999999999999888999999999999999999999999999999999999999999999999999864

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}

Probab=99.93  E-value=2e-26  Score=205.86  Aligned_cols=82  Identities=33%  Similarity=0.815  Sum_probs=76.7

Q ss_pred             CcchHHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCcCCCCCCCc
Q psy2747           1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNV   80 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~~~~~~n~   80 (557)
                      |..|++||+||.+||.. .+++++||+|||||||.+|+|+||+||++|.+|+++||||+||++++|+|+|++.. .++||
T Consensus        34 y~~e~~RL~TF~~WP~~-~~~p~~LA~AGFYYtG~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~sP~C~Fv~~~-~~~Nv  111 (136)
T 3siq_A           34 LNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRR-TTNNV  111 (136)
T ss_dssp             TTBHHHHHHTTTTCCCT-TSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCTTTTTC-CCCCB
T ss_pred             hhCHHHHHHHHccCCCC-cCCHHHHHHCCCeEcCCCCeEEEeccCCEecCCCCCCCHHHHHHHHCcCCcceecc-cCCCc
Confidence            78899999999999986 48999999999999999999999999999999999999999999999999999876 46899


Q ss_pred             cccc
Q psy2747          81 SIEN   84 (557)
Q Consensus        81 ~~~~   84 (557)
                      ++..
T Consensus       112 pi~~  115 (136)
T 3siq_A          112 PINA  115 (136)
T ss_dssp             CSCH
T ss_pred             cCCc
Confidence            8854

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...

Probab=99.93  E-value=1.9e-27  Score=217.01  Aligned_cols=75  Identities=27%  Similarity=0.634  Sum_probs=70.2

Q ss_pred             CcchHHHHhhccCCCCCC--CCCHHHHHHcCceeecCC---CceeeeeecceecCCccCCchHHhhhcCCCCCCCCcCCC
Q psy2747           1 MNFERSRLRTFQSWPSNS--PVSSKRIAKAGFFYTGHQ---HEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPE   75 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~~~--~~~~~~LA~aGFyytg~~---d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~~~   75 (557)
                      |..|++||+||.+||...  .++++.||+|||||||.+   |.|+||+||++|.+|+++||||+||++|+|+|+|++...
T Consensus        12 ~~~~~~Rl~TF~~WP~~~~~~~~p~~LA~AGFyy~g~~~~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~p~C~F~~~~k   91 (142)
T 2qfa_A           12 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKK   91 (142)
T ss_dssp             GGSHHHHHHTCCSCSCCSSCSSCHHHHHHTTEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCGGGGCCS
T ss_pred             ccCHHHHHHHHhcCCccCCcCCCHHHHHHcCCCcCCCCCCCCEEEcCCCCCEecccCCCCCHHHHHHHHCcCCcceeccc
Confidence            788999999999999863  589999999999999986   999999999999999999999999999999999998643

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A

Probab=99.93  E-value=2.9e-26  Score=195.05  Aligned_cols=86  Identities=33%  Similarity=0.593  Sum_probs=80.8

Q ss_pred             ccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccchh
Q psy2747         221 EEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQA  300 (557)
Q Consensus       221 ~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~~  300 (557)
                      .+.|.++++||+||.+||+.  +++++||+|||||+|.+|+|+||+|+++|.+|+++||||.||++|+|+|+|++..||+
T Consensus         8 ~~~m~~~~~Rl~TF~~Wp~~--~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p~C~f~~~~kg~   85 (95)
T 3hl5_A            8 NPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQ   85 (95)
T ss_dssp             CGGGCSHHHHHHTTTTCCSS--SCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHHHTCH
T ss_pred             CccccCHHHHHHHHcCCCCC--CCHHHHHhCCCeEcCCCCeEEecCCCCCccCcCCCCCHHHHHHHHCcCCcchHhhccH
Confidence            56899999999999999986  5999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhh
Q psy2747         301 TQANMINL  308 (557)
Q Consensus       301 ~~~~~~~~  308 (557)
                      .+++.|.+
T Consensus        86 ~fv~~i~~   93 (95)
T 3hl5_A           86 EYINNIHL   93 (95)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHc
Confidence            88877654

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E

Probab=99.93  E-value=3.6e-26  Score=200.71  Aligned_cols=83  Identities=34%  Similarity=0.820  Sum_probs=77.0

Q ss_pred             CcchHHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCcCCCCCCCc
Q psy2747           1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNV   80 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~~~~~~n~   80 (557)
                      |..|++||+||.+||.. .+++++||+|||||||.+|+|+||+||++|.+|+++||||+||++|+|+|+|++.. ..+|+
T Consensus        12 ~~~e~~Rl~TF~~WP~~-~~~~~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~Fv~~~-~~~nv   89 (116)
T 1se0_A           12 LNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRR-TTNNV   89 (116)
T ss_dssp             TTBHHHHHTTCTTCCCT-TSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTTTTTC-CCCCB
T ss_pred             hcCHHHHHHHHhhCCCC-cCCHHHHHHcCCcCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHHCccCcceeee-ccCcc
Confidence            78899999999999984 68999999999999999999999999999999999999999999999999999875 57888


Q ss_pred             cccch
Q psy2747          81 SIENE   85 (557)
Q Consensus        81 ~~~~~   85 (557)
                      ++...
T Consensus        90 p~~~~   94 (116)
T 1se0_A           90 PINAE   94 (116)
T ss_dssp             CSCHH
T ss_pred             ccCCC
Confidence            87543

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*

Probab=99.92  E-value=4.8e-26  Score=203.35  Aligned_cols=89  Identities=36%  Similarity=0.641  Sum_probs=81.9

Q ss_pred             CccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccch
Q psy2747         220 NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQ  299 (557)
Q Consensus       220 ~~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~  299 (557)
                      ..+.|.++++||+||.+||....++|++||+|||||+|.+|+|+||+|+++|.+|+++||||.||+||+|+|+|++..||
T Consensus        41 ~~~~m~~e~~RL~SF~~WP~~~~~~pe~LA~AGFYYtg~~D~V~Cf~C~~~L~~We~~DDP~~EH~r~~P~C~Fv~~~Kg  120 (133)
T 2i3h_A           41 AFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKG  120 (133)
T ss_dssp             SCGGGCCHHHHHHTTTTCSCTTTSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHHHHHHC
T ss_pred             CchhhhCHHHHHHHHhcCCCCcCCCHHHHHHcCCCCcCCCCEEEecccCCEeCCCCCCCCHHHHHHHHCcCCceehhccc
Confidence            35689999999999999998766799999999999999999999999999999999999999999999999999998889


Q ss_pred             hhhhhhhhh
Q psy2747         300 ATQANMINL  308 (557)
Q Consensus       300 ~~~~~~~~~  308 (557)
                      +.+++.+..
T Consensus       121 ~~fv~~v~~  129 (133)
T 2i3h_A          121 QEYINNIHL  129 (133)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhh
Confidence            888776643

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...

Probab=99.92  E-value=8e-27  Score=212.92  Aligned_cols=120  Identities=21%  Similarity=0.418  Sum_probs=95.8

Q ss_pred             ccccccchhHHHHHhhccCCCCCC--ccCHHHHHHcCceecCCC---CceeccccccccccccCCCChHHHhhcCCCCCC
Q psy2747         131 SFRSITMNFERSRLRTFQSWPSNS--PVSSKRIAKAGFFYTGHQ---HEVQCFACGVKISNWTYNDSVMAKHRAKDPGCP  205 (557)
Q Consensus       131 ~~~~~~~~~e~~Rl~TF~~wp~~~--~~~~~~LA~aGFyy~g~~---D~v~C~~C~~~l~~w~~~D~p~~eH~~~~p~C~  205 (557)
                      .+.+..|.++++||+||.+||+..  .+++++||+|||||+|..   |.|+||+|++.|++|+++||||.||++++|.|+
T Consensus         6 ~p~~~~~~~~~~Rl~TF~~WP~~~~~~~~p~~LA~AGFyy~g~~~~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~p~C~   85 (142)
T 2qfa_A            6 LPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCA   85 (142)
T ss_dssp             CCTTTGGGSHHHHHHTCCSCSCCSSCSSCHHHHHHTTEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCG
T ss_pred             CCCcccccCHHHHHHHHhcCCccCCcCCCHHHHHHcCCCcCCCCCCCCEEEcCCCCCEecccCCCCCHHHHHHHHCcCCc
Confidence            355678999999999999999875  478999999999999976   999999999999999999999999999999999


Q ss_pred             CccCCCCCCCcccCC----------ccccccHHHHHccCCCCCCCCCCCHHHHHh
Q psy2747         206 FVKNPEASGNVSIEN----------EEVYKLESGRLATFNNWPVSFIVTPEALAK  250 (557)
Q Consensus       206 f~~~~~~~~~~~~~~----------~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~  250 (557)
                      |+.......++.+.+          .......++|++||.+||......+.+||.
T Consensus        86 F~~~~k~~~~~t~~~~l~l~~~~~~~~~~~~~~~r~~~F~~~p~~~~~~~~~la~  140 (142)
T 2qfa_A           86 FLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAA  140 (142)
T ss_dssp             GGGCCSCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceecccccchhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence            997543222222110          011233489999999999764446777875

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A

Probab=99.92  E-value=5.2e-26  Score=194.34  Aligned_cols=87  Identities=37%  Similarity=0.673  Sum_probs=80.7

Q ss_pred             ccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccchh
Q psy2747         221 EEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQA  300 (557)
Q Consensus       221 ~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~~  300 (557)
                      ...|.++++||+||.+||....++|++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|+|+|++..||+
T Consensus         8 ~~~m~~~~~Rl~TF~~Wp~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p~C~f~~~~kg~   87 (97)
T 3d9t_A            8 NLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQ   87 (97)
T ss_dssp             CGGGCSHHHHHHGGGGCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHHHHHHHCH
T ss_pred             chhhhCHHHHHHHHhcCCCcccCCHHHHHHcCCCCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHhCccChhhHhhccH
Confidence            45799999999999999987667999999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhhhhh
Q psy2747         301 TQANMIN  307 (557)
Q Consensus       301 ~~~~~~~  307 (557)
                      .+++.+.
T Consensus        88 ~~v~~~~   94 (97)
T 3d9t_A           88 EFVDEIQ   94 (97)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8777654

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A

Probab=99.92  E-value=8.5e-26  Score=200.06  Aligned_cols=88  Identities=27%  Similarity=0.574  Sum_probs=81.0

Q ss_pred             CccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccch
Q psy2747         220 NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQ  299 (557)
Q Consensus       220 ~~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~  299 (557)
                      ..+.|.++++||+||.+||....+++++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|+|+|++..||
T Consensus        19 ~~p~~~~e~~Rl~TF~~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv~~~kg   98 (124)
T 1jd5_A           19 QYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKLMKG   98 (124)
T ss_dssp             SCGGGCSHHHHHHHGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHHHHHHC
T ss_pred             CChhhhCHHHHHHHHhhCCCCccCCHHHHHHcCCCCcCCCCEEEecCCCCEecCCCCCCCHHHHHHHHCcCCceeecccc
Confidence            35689999999999999998876799999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhhhhh
Q psy2747         300 ATQANMIN  307 (557)
Q Consensus       300 ~~~~~~~~  307 (557)
                      ..+++.+.
T Consensus        99 ~~fv~~v~  106 (124)
T 1jd5_A           99 QLYIDTVA  106 (124)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            77666554

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B

Probab=99.92  E-value=1.4e-25  Score=190.16  Aligned_cols=75  Identities=41%  Similarity=0.887  Sum_probs=71.5

Q ss_pred             ccchhHHHHHhhccCCCCCCccCHHHHHHcCceecCCCCceeccccccccccccCCCChHHHhhcCCCCCCCccC
Q psy2747         135 ITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKN  209 (557)
Q Consensus       135 ~~~~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~w~~~D~p~~eH~~~~p~C~f~~~  209 (557)
                      ..|.+|++||+||.+||...++++++||+|||||+|.+|+|+||+|++.|++|+++|||++||++++|+|+|++.
T Consensus        16 ~~~~~e~~Rl~TF~~WP~~~~~~p~~LA~AGFyytg~~D~V~Cf~C~~~l~~We~~DdP~~eH~r~~P~C~Fv~~   90 (94)
T 2poi_A           16 EEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFING   90 (94)
T ss_dssp             -CTTSHHHHHGGGTTCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTTTTT
T ss_pred             hhhhCHHHHHHHHhcCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCccccc
Confidence            579999999999999999877899999999999999999999999999999999999999999999999999975

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A

Probab=99.92  E-value=9e-26  Score=204.18  Aligned_cols=81  Identities=40%  Similarity=0.804  Sum_probs=76.1

Q ss_pred             CcchHHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCcCCCCCCCc
Q psy2747           1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNV   80 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~~~~~~n~   80 (557)
                      |..|++||+||.+||....+++++||+|||||||.+|+|+||+||++|.+|+++||||+||++|+|+|+|++... + |+
T Consensus        41 m~~e~~Rl~TF~~WP~~~~~~p~~LA~AGFyY~g~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv~~~~-~-nv  118 (141)
T 1i4o_C           41 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRN-L-NI  118 (141)
T ss_pred             hhCHHHHHHHHhcCCCCccCCHHHHHHcCCcCcCCCCEEEeccCCCEecCCCCCCCHHHHHHHHCcCCcccCccc-c-CC
Confidence            788999999999999877789999999999999999999999999999999999999999999999999998764 4 88


Q ss_pred             ccc
Q psy2747          81 SIE   83 (557)
Q Consensus        81 ~~~   83 (557)
                      ++.
T Consensus       119 p~~  121 (141)
T 1i4o_C          119 RSE  121 (141)
T ss_pred             Ccc
Confidence            774

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D

Probab=99.91  E-value=9.2e-26  Score=187.98  Aligned_cols=77  Identities=32%  Similarity=0.735  Sum_probs=71.5

Q ss_pred             CCccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCcccc
Q psy2747         219 ENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLA  295 (557)
Q Consensus       219 ~~~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~  295 (557)
                      .+..+|.+++.||+||.+||+...+++++||+|||||+|.+|+|+||+|+++|.+|+++||||+||++|+|+|+|++
T Consensus         4 ~~~~~~~~e~~Rl~TF~~WP~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~F~~   80 (85)
T 3m1d_A            4 GSKYDFSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCSFIQ   80 (85)
T ss_dssp             ---CCHHHHHHHHHGGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECSCCTTCCHHHHHHHHCTTCHHHH
T ss_pred             ccHHHhHhHHHHHHHHhcCCCCCcCCHHHHHHCCCeEeCCCCEEEeCCcCCEecCCCCCCCHHHHHHHHCccCcchh
Confidence            34558999999999999999987679999999999999999999999999999999999999999999999999997

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*

Probab=99.91  E-value=1.6e-25  Score=198.21  Aligned_cols=88  Identities=36%  Similarity=0.649  Sum_probs=82.3

Q ss_pred             ccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccchh
Q psy2747         221 EEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQA  300 (557)
Q Consensus       221 ~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~~  300 (557)
                      ...|.++++||+||.+||....++|++||+|||||+|.+|+|+||+|+++|.+|+++||||.||++|+|+|+|++..||+
T Consensus        14 ~~~m~s~~~Rl~TF~~WP~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv~~~kg~   93 (122)
T 3mup_A           14 NLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQ   93 (122)
T ss_dssp             CGGGCSHHHHHHGGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHHHHCH
T ss_pred             CccccCHHHHHHHHhcCCCcccCCHHHHHHCCCeEeCCCCeEEecCcCCEecCCCCCCCHHHHHHHHCcCCcchhhcCcH
Confidence            45899999999999999988667999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhh
Q psy2747         301 TQANMINL  308 (557)
Q Consensus       301 ~~~~~~~~  308 (557)
                      .+++.|..
T Consensus        94 ~fi~~i~~  101 (122)
T 3mup_A           94 EFVDEIQG  101 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777654

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}

Probab=99.91  E-value=4.8e-26  Score=197.16  Aligned_cols=83  Identities=34%  Similarity=0.746  Sum_probs=74.9

Q ss_pred             CccccccHHHHHccCCCCCCCCC-CCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccc
Q psy2747         220 NEEVYKLESGRLATFNNWPVSFI-VTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDN  298 (557)
Q Consensus       220 ~~~~~~~~~~Rl~SF~~wp~~~~-~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~  298 (557)
                      +.+.|.++++||+||.+||+... ++|++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|+|+|++..|
T Consensus        14 ~~~~~~~~~~Rl~TF~~WP~~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~Fv~~~K   93 (106)
T 2vm5_A           14 GKMRYQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPKCEFLRSKK   93 (106)
T ss_dssp             --CTTSSHHHHHHGGGGCCGGGTTSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHHHHHHH
T ss_pred             CchhhcCHHHHHHHHhcCCCCcccCCHHHHHHcCCCCcCCCCEEEccccCCEecCCCCCCCHHHHHHHHCcCCcchhhcc
Confidence            45689999999999999998754 68999999999999999999999999999999999999999999999999999666


Q ss_pred             hhhh
Q psy2747         299 QATQ  302 (557)
Q Consensus       299 ~~~~  302 (557)
                      |..+
T Consensus        94 g~~~   97 (106)
T 2vm5_A           94 SSEE   97 (106)
T ss_dssp             CCTT
T ss_pred             CHHH
Confidence            6443

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A

Probab=99.91  E-value=3.1e-25  Score=200.67  Aligned_cols=104  Identities=33%  Similarity=0.513  Sum_probs=89.1

Q ss_pred             CCCChHHHhhcCCCCCCCccCCCCCCCcccCCccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeecc
Q psy2747         189 YNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCS  268 (557)
Q Consensus       189 ~~D~p~~eH~~~~p~C~f~~~~~~~~~~~~~~~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~  268 (557)
                      .+|+|.++|......|.-+...   ........+.|.++++||+||.+||+...+++++||+|||||+|.+|+|+||+|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~m~~e~~Rl~TF~~WP~~~~~~p~~LA~AGFyY~g~~D~V~Cf~C~   85 (141)
T 1i4o_C            9 ALDRPSETHADYLLRTGQVVDI---SDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCG   85 (141)
T ss_pred             ccCCchhhcccccccccccccc---ccccCCCChhhhCHHHHHHHHhcCCCCccCCHHHHHHcCCcCcCCCCEEEeccCC
Confidence            4688999998877777544321   1112233458999999999999999887679999999999999999999999999


Q ss_pred             CcccccCCCCChHHHhhhcCCCCcccc
Q psy2747         269 VIIGRWEQGDNAESEHKRQSPNCPFLA  295 (557)
Q Consensus       269 ~~l~~W~~~Ddp~~eH~~~~p~C~f~~  295 (557)
                      ++|.+|+++||||.||++|+|+|+|++
T Consensus        86 ~~L~~We~~DdP~~EH~r~~P~C~Fv~  112 (141)
T 1i4o_C           86 GKLKNWEPCDRAWSEHRRHFPNCFFVL  112 (141)
T ss_pred             CEecCCCCCCCHHHHHHHHCcCCcccC
Confidence            999999999999999999999999998

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A

Probab=99.91  E-value=2.4e-25  Score=196.92  Aligned_cols=86  Identities=33%  Similarity=0.593  Sum_probs=80.2

Q ss_pred             ccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccchh
Q psy2747         221 EEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQA  300 (557)
Q Consensus       221 ~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~~  300 (557)
                      .+.|.++++||+||.+||+.  +++++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|+|+|++..||.
T Consensus        22 ~~~m~~~~~Rl~TF~~Wp~~--~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~P~C~Fv~~~kg~   99 (121)
T 1g73_C           22 NPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQ   99 (121)
T ss_dssp             CGGGCSHHHHHHTTTTCCSS--SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ChhhhCHHHHHHHHccCCCC--CCHHHHHHcCCCCcCCCCEEEcCcCCCCcCCCCCCCCHHHHHHHHCcCCcchhhccch
Confidence            56899999999999999987  5899999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhhhhhh
Q psy2747         301 TQANMINL  308 (557)
Q Consensus       301 ~~~~~~~~  308 (557)
                      .+.+.+.+
T Consensus       100 ~~v~~v~~  107 (121)
T 1g73_C          100 EYINNIHL  107 (121)
T ss_dssp             HHHHHHTC
T ss_pred             hhhccccc
Confidence            87776654

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}

Probab=99.91  E-value=4.5e-25  Score=191.56  Aligned_cols=75  Identities=41%  Similarity=0.887  Sum_probs=71.5

Q ss_pred             ccchhHHHHHhhccCCCCCCccCHHHHHHcCceecCCCCceeccccccccccccCCCChHHHhhcCCCCCCCccC
Q psy2747         135 ITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKN  209 (557)
Q Consensus       135 ~~~~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~w~~~D~p~~eH~~~~p~C~f~~~  209 (557)
                      ..|.+|++||+||.+||...++++++||+|||||+|.+|+|+||+|++.|++|+++|||++||++++|+|+|++.
T Consensus        33 ~~m~~e~~RL~TF~~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~sP~C~Fv~~  107 (111)
T 2qra_D           33 EEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFING  107 (111)
T ss_dssp             -CTTSHHHHHHTTTTCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTTTTT
T ss_pred             hhhhCHHHHHHHHhcCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCcchhh
Confidence            579999999999999999877899999999999999999999999999999999999999999999999999975

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}

Probab=99.91  E-value=7.5e-25  Score=195.66  Aligned_cols=74  Identities=47%  Similarity=0.950  Sum_probs=70.7

Q ss_pred             ccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCcccc
Q psy2747         221 EEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLA  295 (557)
Q Consensus       221 ~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~  295 (557)
                      .++|.++++||+||.+||+.. +++++||+|||||+|.+|+|+||+|+++|.+|+++||||+||+||+|.|+|++
T Consensus        31 ~~dy~~e~~RL~TF~~WP~~~-~~p~~LA~AGFYYtG~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~sP~C~Fv~  104 (136)
T 3siq_A           31 MNDLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLR  104 (136)
T ss_dssp             CCCTTBHHHHHHTTTTCCCTT-SCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCTTTT
T ss_pred             HHhhhCHHHHHHHHccCCCCc-CCHHHHHHCCCeEcCCCCeEEEeccCCEecCCCCCCCHHHHHHHHCcCCccee
Confidence            347999999999999999976 59999999999999999999999999999999999999999999999999998

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E

Probab=99.90  E-value=1.4e-24  Score=190.72  Aligned_cols=73  Identities=48%  Similarity=0.972  Sum_probs=70.0

Q ss_pred             cccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCcccc
Q psy2747         222 EVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLA  295 (557)
Q Consensus       222 ~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~  295 (557)
                      ++|.++++||+||.+||+.. +++++||+|||||+|.+|+|+||+|+++|.+|+++||||.||++|+|+|+|++
T Consensus        10 ~~~~~e~~Rl~TF~~WP~~~-~~~~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~Fv~   82 (116)
T 1se0_A           10 NDLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLR   82 (116)
T ss_dssp             CCTTBHHHHHTTCTTCCCTT-SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTTTT
T ss_pred             hhhcCHHHHHHHHhhCCCCc-CCHHHHHHcCCcCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHHCccCccee
Confidence            47999999999999999865 59999999999999999999999999999999999999999999999999998

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=99.86  E-value=9e-23  Score=212.25  Aligned_cols=89  Identities=46%  Similarity=1.091  Sum_probs=84.3

Q ss_pred             CCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchhhhhhhhhH
Q psy2747         392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQF  471 (557)
Q Consensus       392 ~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv~~~kG~~f  471 (557)
                      .|.++++|++||.+||...+++++.||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|.|.|++..||.+|
T Consensus         2 ~m~~~~~Rl~tF~~WP~~~~~~~~~lA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~f~~~~kg~~~   81 (345)
T 3t6p_A            2 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEF   81 (345)
T ss_dssp             TTSSHHHHHHHGGGSCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHHHHCHHH
T ss_pred             CCccHHHHHHHHhhCCCcccCCHHHHHhCCCeecCCCCeEEecCCCCCccCCCCCCCHHHHHHHhCCCCccHHHhccHHH
Confidence            47789999999999998878899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcCC
Q psy2747         472 IEDTIKANP  480 (557)
Q Consensus       472 v~~v~~~~~  480 (557)
                      |++++...+
T Consensus        82 i~~~~~~~~   90 (345)
T 3t6p_A           82 VDEIQGRYP   90 (345)
T ss_dssp             HHHHHHHST
T ss_pred             HHHHHHhCc
Confidence            999886544

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.46  E-value=5e-14  Score=115.80  Aligned_cols=64  Identities=39%  Similarity=0.945  Sum_probs=60.0

Q ss_pred             ccChHHHHHHHHhccccccccccccceEEecCCccccchhhhcCCCCCCCCccccccEEEEeeC
Q psy2747         494 VKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS  557 (557)
Q Consensus       494 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~~~CP~CR~~i~~~i~i~~s  557 (557)
                      ..+++++++.+.+...|+||++..++++++||||.++|..|+..+..||+||++|...+++|++
T Consensus         5 ~~~l~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p   68 (79)
T 2yho_A            5 TRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP   68 (79)
T ss_dssp             -CTHHHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred             HHHHHHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence            3568899999999999999999999999999999999999999999999999999999999974

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.43  E-value=1.1e-13  Score=112.22  Aligned_cols=65  Identities=46%  Similarity=0.987  Sum_probs=59.6

Q ss_pred             cccChHHHHHHHHhccccccccccccceEEecCCccccchhhhcCCCCCCCCccccccEEEEeeC
Q psy2747         493 FVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS  557 (557)
Q Consensus       493 ~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~~~CP~CR~~i~~~i~i~~s  557 (557)
                      ...+++++++.+.+...|.||++...+.+++||||.++|..|+..+..||+||++|...++||+|
T Consensus        10 ~~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S   74 (74)
T 4ic3_A           10 KEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS   74 (74)
T ss_dssp             -CCCHHHHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred             ccccHHHHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence            34567788888999999999999999999999999999999999999999999999999999987

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.34  E-value=2.4e-13  Score=106.80  Aligned_cols=52  Identities=31%  Similarity=0.821  Sum_probs=48.3

Q ss_pred             hccccccccccccceEEe--cCCccccchhhhcCCC----CCCCCccccccEEEEeeC
Q psy2747         506 EARLCKICMDKEVGVVLL--PCGHLVTCVLCASSLP----RCPVCRENIKATVRTFLS  557 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~--PCgH~~~C~~Ca~~~~----~CP~CR~~i~~~i~i~~s  557 (557)
                      ....|+||+++.++++++  ||||+++|..|+..+.    +||+||++|..+++||+|
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s   63 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA   63 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence            467899999999998888  9999999999999885    999999999999999987

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.9e-13  Score=109.98  Aligned_cols=63  Identities=49%  Similarity=1.072  Sum_probs=58.8

Q ss_pred             cChHHHHHHHHhccccccccccccceEEecCCccccchhhhcCCCCCCCCccccccEEEEeeC
Q psy2747         495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS  557 (557)
Q Consensus       495 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~~~CP~CR~~i~~~i~i~~s  557 (557)
                      ...+++++++.+...|.||++..++.+++||||.++|..|+..+..||+||.+|...++||+|
T Consensus        13 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S   75 (75)
T 2ecg_A           13 ISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS   75 (75)
T ss_dssp             CCHHHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred             cChHHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence            456778888888899999999999999999999999999999999999999999999999987

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=3.6e-13  Score=107.44  Aligned_cols=52  Identities=29%  Similarity=0.702  Sum_probs=49.1

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCCCCCCCCccccccEEEEeeC
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS  557 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~~~CP~CR~~i~~~i~i~~s  557 (557)
                      +...|+||+++.++++|+||||+++|..|+..+..||+||++|..+++||.+
T Consensus        14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~   65 (68)
T 2ea5_A           14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP   65 (68)
T ss_dssp             CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred             CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence            4678999999999999999999999999999999999999999999999863

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.30  E-value=4.8e-13  Score=105.39  Aligned_cols=52  Identities=35%  Similarity=0.791  Sum_probs=48.2

Q ss_pred             hccccccccccccceEEe--cCCccccchhhhcCC----CCCCCCccccccEEEEeeC
Q psy2747         506 EARLCKICMDKEVGVVLL--PCGHLVTCVLCASSL----PRCPVCRENIKATVRTFLS  557 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~--PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i~i~~s  557 (557)
                      +...|+||+++.++++|+  ||||+++|..|+..+    ..||+||++|..++++|+|
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~   64 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP   64 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence            567899999999999998  999999999999877    3699999999999999986

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.26  E-value=5.6e-07  Score=81.24  Aligned_cols=49  Identities=33%  Similarity=0.752  Sum_probs=41.6

Q ss_pred             HHHhccccccccccccceEEecCCccccchhhhcCC----CCCCCCccccccEE
Q psy2747         503 RLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKATV  552 (557)
Q Consensus       503 ~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i  552 (557)
                      .+.++..|.||++.-.+.+++||||. +|..|....    ..||+||.+|....
T Consensus        49 ~~~~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           49 VLENELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT  101 (138)
T ss_dssp             HHHHHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred             hccccCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence            34456789999999999999999996 899998753    68999999997654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=5.6e-07  Score=71.53  Aligned_cols=44  Identities=39%  Similarity=0.893  Sum_probs=39.1

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      +...|.||++...+.+++||||. +|..|....    ..||+||..|..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence            45689999999999999999999 899999865    689999999864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.20  E-value=3.5e-07  Score=70.65  Aligned_cols=49  Identities=33%  Similarity=0.759  Sum_probs=40.3

Q ss_pred             ccccccccccccce-------EEecCCccccchhhhcCC----CCCCCCccccc--cEEEEee
Q psy2747         507 ARLCKICMDKEVGV-------VLLPCGHLVTCVLCASSL----PRCPVCRENIK--ATVRTFL  556 (557)
Q Consensus       507 ~~~C~IC~~~~~~~-------~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~--~~i~i~~  556 (557)
                      ...|.||++.-.+.       +++||||. +|..|....    ..||+||+++.  .+.++|+
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l   64 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI   64 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence            56899999876553       88899999 899999754    68999999988  5677775

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.20  E-value=3.5e-07  Score=71.84  Aligned_cols=49  Identities=33%  Similarity=0.862  Sum_probs=41.7

Q ss_pred             hccccccccccccc-eEEecCCccccchhhhcCC----CCCCCCccccccEEEEe
Q psy2747         506 EARLCKICMDKEVG-VVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVRTF  555 (557)
Q Consensus       506 ~~~~C~IC~~~~~~-~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i~i~  555 (557)
                      +...|.||++...+ ++++||||. +|..|....    ..||+||+++...++.+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence            35689999999888 588999999 899999753    78999999999877654

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.17  E-value=1.3e-07  Score=74.87  Aligned_cols=50  Identities=30%  Similarity=0.754  Sum_probs=42.5

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC----CCCCCCccccccEEEEee
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVRTFL  556 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i~i~~  556 (557)
                      .+...|.||++...+ +++||||. +|..|....    ..||+||.++.....+|.
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   66 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG   66 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence            356789999999988 88999999 899999864    689999999987765553

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=8.6e-07  Score=70.55  Aligned_cols=45  Identities=31%  Similarity=0.890  Sum_probs=39.2

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC-------CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-------PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-------~~CP~CR~~i~~  550 (557)
                      .+...|.||++...+.+++||||. +|..|....       ..||+||+++..
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            456789999999999999999999 899999754       379999998864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.09  E-value=4.3e-07  Score=71.87  Aligned_cols=50  Identities=32%  Similarity=0.746  Sum_probs=39.7

Q ss_pred             hccccccccccccce-------EEecCCccccchhhhcCC----CCCCCCcccccc--EEEEee
Q psy2747         506 EARLCKICMDKEVGV-------VLLPCGHLVTCVLCASSL----PRCPVCRENIKA--TVRTFL  556 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~-------~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~--~i~i~~  556 (557)
                      +...|.||++.-.+.       +++||||. +|..|....    ..||+||+++..  +.++|+
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l   71 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI   71 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence            467899999876554       88999998 899999754    699999999874  455553

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.05  E-value=1.5e-06  Score=65.15  Aligned_cols=44  Identities=32%  Similarity=0.753  Sum_probs=36.7

Q ss_pred             hccccccccccccc----eEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVG----VVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~----~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      +...|.||++.-.+    ++++||||. +|..|....    ..||+||++|.+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g   55 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG   55 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            35689999987644    889999997 899999765    789999998863

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.01  E-value=2.8e-06  Score=75.02  Aligned_cols=54  Identities=20%  Similarity=0.474  Sum_probs=45.1

Q ss_pred             ChHHHHHHHHhccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         496 SLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       496 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      .++..+..+.+...|.||++.-.+.+.+||||. +|..|....     ..||+||.++..
T Consensus        41 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           41 PFQLFLSKVEETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHHHHHHHHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             hHHHHHHhCccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            344556667778899999999999999999999 899999643     489999999865

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.00  E-value=4.4e-06  Score=87.54  Aligned_cols=49  Identities=41%  Similarity=0.897  Sum_probs=43.2

Q ss_pred             ccccccccccccceEEecCCccccchhhhc-----CCCCCCCCccccccEEEEee
Q psy2747         507 ARLCKICMDKEVGVVLLPCGHLVTCVLCAS-----SLPRCPVCRENIKATVRTFL  556 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~-----~~~~CP~CR~~i~~~i~i~~  556 (557)
                      ...|.||++...+.+++||||. +|..|..     ....||+||++|.....|.+
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v  385 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV  385 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred             CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence            3689999999999999999999 6999997     35799999999999877654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=1.2e-06  Score=68.66  Aligned_cols=45  Identities=36%  Similarity=0.809  Sum_probs=37.4

Q ss_pred             Hhccccccccccccce-------EEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGV-------VLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~-------~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      .+...|.||++...+.       +++||||. +|..|....    ..||+||.+|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence            3567899999876654       88999997 899999764    689999999864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=2.3e-06  Score=69.74  Aligned_cols=45  Identities=29%  Similarity=0.572  Sum_probs=39.1

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCC----CCCCCCccccccE
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKAT  551 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~  551 (557)
                      +...|.||++...+.+++||||. +|..|....    ..||+||.++...
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (81)
T 2csy_A           14 IPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGI   62 (81)
T ss_dssp             CCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred             CCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCcccccc
Confidence            35689999999999999999998 799999764    6899999998743

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=97.96  E-value=2.5e-06  Score=63.96  Aligned_cols=43  Identities=28%  Similarity=0.735  Sum_probs=35.8

Q ss_pred             hccccccccccccc---eEEec-CCccccchhhhcCC----CCCCCCccccc
Q psy2747         506 EARLCKICMDKEVG---VVLLP-CGHLVTCVLCASSL----PRCPVCRENIK  549 (557)
Q Consensus       506 ~~~~C~IC~~~~~~---~~~~P-CgH~~~C~~Ca~~~----~~CP~CR~~i~  549 (557)
                      +...|.||++.-.+   ++.+| |||. +|..|....    ..||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence            45689999987665   77787 9998 899999764    68999999874

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.95  E-value=2.1e-06  Score=65.17  Aligned_cols=44  Identities=27%  Similarity=0.620  Sum_probs=38.3

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCC-CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-~~CP~CR~~i~~  550 (557)
                      +...|.||++.-.+.+++||||. +|..|.... ..||+||+.+..
T Consensus         5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred             cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence            45689999999999999999998 899998765 589999998763

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.94  E-value=2.4e-06  Score=68.02  Aligned_cols=46  Identities=28%  Similarity=0.601  Sum_probs=39.0

Q ss_pred             HhccccccccccccceEEe-cCCccccchhhhcCC----CCCCCCccccccE
Q psy2747         505 REARLCKICMDKEVGVVLL-PCGHLVTCVLCASSL----PRCPVCRENIKAT  551 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~-PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~  551 (557)
                      .+...|.||++...+.+.+ ||||. +|..|....    ..||+||.++...
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           13 TPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             CCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            4567899999999888876 99999 799999653    6999999998753

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=97.93  E-value=2.4e-06  Score=68.90  Aligned_cols=45  Identities=31%  Similarity=0.710  Sum_probs=38.5

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcC-----------CCCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASS-----------LPRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~-----------~~~CP~CR~~i~~  550 (557)
                      .+...|.||++...+.+.+||||. +|..|...           ...||+||.++..
T Consensus        10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            356789999999988888999998 89999985           3589999998853

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.91  E-value=3.5e-06  Score=72.68  Aligned_cols=53  Identities=25%  Similarity=0.716  Sum_probs=43.2

Q ss_pred             hHHHHHHHHhccccccccccccceEEecCCccccchhhhcCC-------CCCCCCcccccc
Q psy2747         497 LEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-------PRCPVCRENIKA  550 (557)
Q Consensus       497 ~~~~~~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-------~~CP~CR~~i~~  550 (557)
                      +++.+..+.+...|.||++...+.+.+||||. +|..|....       ..||+||.++..
T Consensus        11 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           11 VQNVINAMQKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             HHHHHHhccCCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            34445566678899999999999888999998 899998753       279999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=3.2e-06  Score=69.61  Aligned_cols=45  Identities=40%  Similarity=0.840  Sum_probs=38.0

Q ss_pred             Hhccccccccccccc----eEEecCCccccchhhhcCC-------CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVG----VVLLPCGHLVTCVLCASSL-------PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~----~~~~PCgH~~~C~~Ca~~~-------~~CP~CR~~i~~  550 (557)
                      .+...|.||++.-.+    .+++||||. +|..|...+       ..||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             cCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            356789999998887    888999998 899999754       589999997653

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=97.87  E-value=5.7e-06  Score=70.38  Aligned_cols=51  Identities=31%  Similarity=0.695  Sum_probs=43.5

Q ss_pred             HHHHHHHhccccccccccccceEE-ecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         499 EEVRRLREARLCKICMDKEVGVVL-LPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       499 ~~~~~~~~~~~C~IC~~~~~~~~~-~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      .....+.+...|.||++...+.+. +||||. +|..|....     ..||+||.++..
T Consensus        14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           14 QSVESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHHHHHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cccccCCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            445667788899999999999999 999999 899999753     589999998753

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.87  E-value=3.9e-06  Score=66.05  Aligned_cols=46  Identities=35%  Similarity=0.806  Sum_probs=37.2

Q ss_pred             hcccccccccc---ccceEEecCCccccchhhhcCC----CCCCCCccccccEE
Q psy2747         506 EARLCKICMDK---EVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKATV  552 (557)
Q Consensus       506 ~~~~C~IC~~~---~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i  552 (557)
                      +...|.||++.   ...++.+||||. +|..|....    ..||+||.+|...+
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            45689999764   356788999999 899999754    68999999987643

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.87  E-value=4.7e-06  Score=67.87  Aligned_cols=45  Identities=31%  Similarity=0.637  Sum_probs=39.0

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcC----------CCCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASS----------LPRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~----------~~~CP~CR~~i~~  550 (557)
                      .+...|.||++...+.+++||||. +|..|...          ...||+||.++..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            346789999999999899999998 89999975          4689999998864

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.86  E-value=3.3e-06  Score=65.73  Aligned_cols=43  Identities=28%  Similarity=0.684  Sum_probs=33.8

Q ss_pred             ccccccccc-cccc----eEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         507 ARLCKICMD-KEVG----VVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       507 ~~~C~IC~~-~~~~----~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      +..|.||++ .-.+    .+++||||. +|..|..++     ..||+||.++..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            467999999 2222    256799999 899998765     579999999864

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.85  E-value=2.3e-06  Score=66.87  Aligned_cols=45  Identities=29%  Similarity=0.668  Sum_probs=38.5

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      .+...|.||++...+.+.+||||. +|..|....     ..||+||+++..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            346789999999888888999999 899999743     589999999864

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=2.4e-06  Score=68.20  Aligned_cols=48  Identities=21%  Similarity=0.531  Sum_probs=38.2

Q ss_pred             Hhccccccccccc---cceEEecCCccccchhhhcCC----CCCCCCccccccEEE
Q psy2747         505 REARLCKICMDKE---VGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVR  553 (557)
Q Consensus       505 ~~~~~C~IC~~~~---~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i~  553 (557)
                      .+...|.||++.-   ..++.+||||. +|..|....    ..||+||.+|....+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence            3467899999763   45667799999 899999754    689999999987543

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=97.83  E-value=6.5e-06  Score=69.63  Aligned_cols=49  Identities=22%  Similarity=0.682  Sum_probs=40.9

Q ss_pred             HHHHHhccccccccccccceEEe-cCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         501 VRRLREARLCKICMDKEVGVVLL-PCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       501 ~~~~~~~~~C~IC~~~~~~~~~~-PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      ++.+.+...|.||++.-.+.+.+ ||||. +|..|....    ..||+||.++..
T Consensus        16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           16 MKTIDDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             GHHHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             HHhCCCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            34455678999999998888888 99999 899998653    689999998874

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=97.82  E-value=9.2e-06  Score=69.88  Aligned_cols=49  Identities=20%  Similarity=0.584  Sum_probs=41.9

Q ss_pred             HHHHHhccccccccccccceEEe-cCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         501 VRRLREARLCKICMDKEVGVVLL-PCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       501 ~~~~~~~~~C~IC~~~~~~~~~~-PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      +..+.+...|.||++.-.+.+.+ ||||. +|..|....    ..||+||..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A            9 ITELNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             HHHHGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             hhccCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence            34566788999999999999888 99999 899999754    689999999874

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.82  E-value=4.2e-06  Score=67.48  Aligned_cols=44  Identities=32%  Similarity=0.744  Sum_probs=35.7

Q ss_pred             hcccccccccc---ccceEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         506 EARLCKICMDK---EVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~---~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      +...|.||++.   ...++.+||||. +|..|....    ..||+||+++..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCC
Confidence            46789999654   455677899998 899999753    689999999875

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=4.2e-06  Score=68.14  Aligned_cols=45  Identities=33%  Similarity=0.793  Sum_probs=38.9

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcC----------CCCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASS----------LPRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~----------~~~CP~CR~~i~~  550 (557)
                      .+...|.||++...+.+.+||||. +|..|...          ...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             cCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            356789999999999888999998 89999975          4689999998874

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=97.81  E-value=8e-06  Score=74.84  Aligned_cols=49  Identities=24%  Similarity=0.593  Sum_probs=41.4

Q ss_pred             HHHHHhccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         501 VRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       501 ~~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      +..+.+...|.||++...+.+.+||||. +|..|....     ..||+||.++..
T Consensus        72 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           72 LKKLEQSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             HHhCccCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCC
Confidence            3445567899999999999999999998 899999754     379999999875

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.78  E-value=5.2e-06  Score=69.37  Aligned_cols=44  Identities=34%  Similarity=0.656  Sum_probs=36.3

Q ss_pred             hccccccccccccc---eEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVG---VVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~---~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      +...|.||++.-..   ++.+||||. +|..|....    ..||+||..+..
T Consensus        39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence            45689999976555   788999997 899998753    689999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.77  E-value=5.3e-06  Score=66.46  Aligned_cols=44  Identities=32%  Similarity=0.717  Sum_probs=35.7

Q ss_pred             hccccccccccc---cceEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKE---VGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~---~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      +...|.||++.-   ..++.+||||. +|..|....    ..||+||+++..
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            456899999653   34578899998 899999764    689999998864

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=97.76  E-value=7.2e-06  Score=65.65  Aligned_cols=44  Identities=34%  Similarity=0.798  Sum_probs=38.1

Q ss_pred             HhccccccccccccceEEec-CCccccchhhhcCC------CCCCCCccccc
Q psy2747         505 REARLCKICMDKEVGVVLLP-CGHLVTCVLCASSL------PRCPVCRENIK  549 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~P-CgH~~~C~~Ca~~~------~~CP~CR~~i~  549 (557)
                      .+...|.||++.-.+.+.+| |||. +|..|....      ..||+||+++.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            45678999999999999999 9998 899999654      48999999754

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.74  E-value=1.3e-05  Score=70.07  Aligned_cols=51  Identities=29%  Similarity=0.571  Sum_probs=44.1

Q ss_pred             HHHHHHHHhccccccccccccceEEe-cCCccccchhhhcCC--CCCCCCccccc
Q psy2747         498 EEEVRRLREARLCKICMDKEVGVVLL-PCGHLVTCVLCASSL--PRCPVCRENIK  549 (557)
Q Consensus       498 ~~~~~~~~~~~~C~IC~~~~~~~~~~-PCgH~~~C~~Ca~~~--~~CP~CR~~i~  549 (557)
                      .+.+..+.+...|.||++.-.+.+.+ ||||. +|..|....  ..||+||.++.
T Consensus        13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~   66 (117)
T 1jm7_B           13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW   66 (117)
T ss_dssp             HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred             HHHHHhchhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence            34566677889999999999999998 99999 899999876  57999999885

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.73  E-value=4.2e-06  Score=68.13  Aligned_cols=47  Identities=26%  Similarity=0.719  Sum_probs=37.5

Q ss_pred             Hhccccccccccc--cceEEec--CCccccchhhhcCC-----CCCCCCccccccEE
Q psy2747         505 REARLCKICMDKE--VGVVLLP--CGHLVTCVLCASSL-----PRCPVCRENIKATV  552 (557)
Q Consensus       505 ~~~~~C~IC~~~~--~~~~~~P--CgH~~~C~~Ca~~~-----~~CP~CR~~i~~~i  552 (557)
                      .++..|.||++..  .+.+++|  |||. +|..|...+     ..||+||+++....
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            4567899999965  3566777  9998 899998765     48999999987643

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=97.73  E-value=1.3e-05  Score=69.78  Aligned_cols=44  Identities=39%  Similarity=0.817  Sum_probs=38.2

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      +...|.||++.-.+.+.+||||. +|..|....     ..||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            35679999999999999999999 899999765     489999998753

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=97.62  E-value=1.3e-05  Score=66.73  Aligned_cols=43  Identities=35%  Similarity=0.829  Sum_probs=37.6

Q ss_pred             HhccccccccccccceEEec-CCccccchhhhcCC------CCCCCCcccc
Q psy2747         505 REARLCKICMDKEVGVVLLP-CGHLVTCVLCASSL------PRCPVCRENI  548 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~P-CgH~~~C~~Ca~~~------~~CP~CR~~i  548 (557)
                      .+...|.||++.-.+.+.+| |||. +|..|....      ..||+||.++
T Consensus        11 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           11 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            35678999999999999999 9999 899998643      5899999986

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=97.60  E-value=1.6e-05  Score=64.08  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=38.6

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcC-----CCCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASS-----LPRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~CP~CR~~i~~  550 (557)
                      .+...|.||++--.+.+.+||||. +|..|...     ...||+||.++..
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            346789999999999999999999 89999864     3579999999864

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=97.56  E-value=2.9e-05  Score=67.50  Aligned_cols=46  Identities=28%  Similarity=0.563  Sum_probs=39.6

Q ss_pred             HHhccccccccccccceEEecCCccccchhhhcC-----CCCCCCCcccccc
Q psy2747         504 LREARLCKICMDKEVGVVLLPCGHLVTCVLCASS-----LPRCPVCRENIKA  550 (557)
Q Consensus       504 ~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~CP~CR~~i~~  550 (557)
                      +.+...|.||++...+.+.+||||. +|..|...     -..||+||.++..
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            3456789999999999999999999 89999864     3589999999864

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=97.54  E-value=2e-05  Score=72.95  Aligned_cols=46  Identities=28%  Similarity=0.704  Sum_probs=38.6

Q ss_pred             HHhccccccccccccceEEe-cCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         504 LREARLCKICMDKEVGVVLL-PCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       504 ~~~~~~C~IC~~~~~~~~~~-PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      +.+...|.||++.-.+.+.+ ||||. +|..|....     ..||+||.++..
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            34567899999999998887 99998 899999753     579999999853

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=1.8e-05  Score=59.78  Aligned_cols=39  Identities=31%  Similarity=0.820  Sum_probs=33.7

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC-------CCCCCC
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-------PRCPVC  544 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-------~~CP~C  544 (557)
                      .+...|.||++...+.+++||||. +|..|....       ..||+|
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence            356789999999999999999999 899998643       689998

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=2.6e-05  Score=60.11  Aligned_cols=39  Identities=36%  Similarity=0.950  Sum_probs=33.9

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC-------CCCCCC
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-------PRCPVC  544 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-------~~CP~C  544 (557)
                      .+...|.||++...+.+.+||||. +|..|....       ..||+|
T Consensus        18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence            456789999999999999999999 899998653       479998

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=97.49  E-value=3e-05  Score=67.81  Aligned_cols=45  Identities=31%  Similarity=0.607  Sum_probs=39.3

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      .+...|.||++.-.+.+.+||||. +|..|....     ..||+||.++..
T Consensus        16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            456789999999999999999999 899999764     499999999875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.34  E-value=5.6e-05  Score=66.59  Aligned_cols=50  Identities=32%  Similarity=0.753  Sum_probs=40.5

Q ss_pred             hccccccccccccce-------EEecCCccccchhhhcC----CCCCCCCccccc--cEEEEee
Q psy2747         506 EARLCKICMDKEVGV-------VLLPCGHLVTCVLCASS----LPRCPVCRENIK--ATVRTFL  556 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~-------~~~PCgH~~~C~~Ca~~----~~~CP~CR~~i~--~~i~i~~  556 (557)
                      +...|.||++.-...       +..||||. +|..|...    .+.||+||+++.  .++++|+
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~  133 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI  133 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence            356799999876553       88899999 89999975    379999999987  4677775

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.33  E-value=6e-05  Score=66.42  Aligned_cols=44  Identities=36%  Similarity=0.828  Sum_probs=36.7

Q ss_pred             hccccccccccccce-------EEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGV-------VLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~-------~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      +...|.||++.-.+.       +.+||||. +|..|....    ..||+||+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            456899999876654       88999997 899999653    689999998874

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.30  E-value=8.3e-05  Score=60.63  Aligned_cols=43  Identities=30%  Similarity=0.672  Sum_probs=30.8

Q ss_pred             ccccccccccccc--------------eEEe-cCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         507 ARLCKICMDKEVG--------------VVLL-PCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       507 ~~~C~IC~~~~~~--------------~~~~-PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      ...|.||++.-.+              ++.+ +|||. ++..|....    ..||+||+++..
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence            3457777664432              4444 59999 899999753    689999998754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.26  E-value=6.4e-05  Score=65.01  Aligned_cols=43  Identities=30%  Similarity=0.584  Sum_probs=33.4

Q ss_pred             cccccccccccc------------------ceEEecCCccccchhhhcC---------CCCCCCCcccccc
Q psy2747         507 ARLCKICMDKEV------------------GVVLLPCGHLVTCVLCASS---------LPRCPVCRENIKA  550 (557)
Q Consensus       507 ~~~C~IC~~~~~------------------~~~~~PCgH~~~C~~Ca~~---------~~~CP~CR~~i~~  550 (557)
                      ...|.||++.-.                  .+.++||||. +|..|...         -..||+||+.+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            357999998742                  3448899998 89999854         2489999998754

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=96.98  E-value=5.9e-05  Score=68.29  Aligned_cols=45  Identities=27%  Similarity=0.643  Sum_probs=38.8

Q ss_pred             HHHhccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccc
Q psy2747         503 RLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENI  548 (557)
Q Consensus       503 ~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i  548 (557)
                      .+.+...|.||++--.+.+..||||. +|..|....     ..||+||.+|
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence            34567789999999988899999999 899999764     4899999976

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.82  E-value=0.00035  Score=64.80  Aligned_cols=45  Identities=31%  Similarity=0.607  Sum_probs=39.5

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      .+...|.||++.-.+.+..||||. +|..|....     ..||+||.++..
T Consensus        16 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence            456789999999999999999999 899999764     499999998875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=96.67  E-value=0.00063  Score=58.46  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=24.7

Q ss_pred             eEEecCCccccchhhhcCC----CCCCCCccccc
Q psy2747         520 VVLLPCGHLVTCVLCASSL----PRCPVCRENIK  549 (557)
Q Consensus       520 ~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~  549 (557)
                      ++++||||. ++..|....    ..||+||+.+.
T Consensus        68 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           68 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             EEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             EeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence            677899999 899999763    68999999853

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=96.66  E-value=0.0007  Score=55.64  Aligned_cols=45  Identities=16%  Similarity=0.076  Sum_probs=39.4

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      .+...|.||++--.+-|.+||||. +|..|....    ..||+||.++..
T Consensus        12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            457789999999999999999999 899998653    699999998764

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=96.61  E-value=0.00079  Score=57.17  Aligned_cols=45  Identities=16%  Similarity=0.103  Sum_probs=39.3

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      .+...|.||++--.+-|.+||||. +|..|....    ..||+||.++..
T Consensus        27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence            457799999999999999999999 899998643    689999998764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.57  E-value=0.0014  Score=55.22  Aligned_cols=44  Identities=25%  Similarity=0.629  Sum_probs=32.3

Q ss_pred             cccccccccc--eEEecCCccccchhhhc-----CCCCCCCCccccccEEEEe
Q psy2747         510 CKICMDKEVG--VVLLPCGHLVTCVLCAS-----SLPRCPVCRENIKATVRTF  555 (557)
Q Consensus       510 C~IC~~~~~~--~~~~PCgH~~~C~~Ca~-----~~~~CP~CR~~i~~~i~i~  555 (557)
                      |.+|- .+..  .-++||.|+ +|.+|+.     ..+.||+|+.+|..+-++.
T Consensus         4 C~~C~-~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~   54 (101)
T 3vk6_A            4 CDKCG-LPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQCT   54 (101)
T ss_dssp             CTTTC-SBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred             cCccC-CCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence            55553 2333  346899995 9999994     4579999999999887653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=96.56  E-value=0.00091  Score=56.58  Aligned_cols=45  Identities=16%  Similarity=0.049  Sum_probs=39.1

Q ss_pred             HhccccccccccccceEEecCC-ccccchhhhcCC----CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCG-HLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCg-H~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      .++..|.||++--.+-|.+||| |. +|..|....    ..||+||.++..
T Consensus        20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            4577999999999999999999 98 899998643    689999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.21  E-value=0.0016  Score=64.62  Aligned_cols=44  Identities=16%  Similarity=0.051  Sum_probs=37.7

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      +...|.||++--.+-|.+||||. +|..|....     ..||+||.++..
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            35689999999999999999999 899998643     349999998864

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=96.05  E-value=0.001  Score=58.19  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=0.0

Q ss_pred             eEEecCCccccchhhhcCC----CCCCCCccccc
Q psy2747         520 VVLLPCGHLVTCVLCASSL----PRCPVCRENIK  549 (557)
Q Consensus       520 ~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~  549 (557)
                      ++++||+|. ++..|....    ..||+||+++.
T Consensus        79 v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           79 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------
T ss_pred             cccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence            445699999 899999874    68999999853

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=95.34  E-value=0.0065  Score=57.01  Aligned_cols=44  Identities=16%  Similarity=0.040  Sum_probs=37.7

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      +...|.||++--.+-|.+||||. +|..|....     ..||+||.++..
T Consensus       105 ~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             HhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            46789999999999999999998 899997643     369999998764

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.15  E-value=0.0072  Score=49.07  Aligned_cols=44  Identities=20%  Similarity=0.607  Sum_probs=33.9

Q ss_pred             hccccccccccc--cceEEecCC-----ccccchhhhcCC------CCCCCCcccccc
Q psy2747         506 EARLCKICMDKE--VGVVLLPCG-----HLVTCVLCASSL------PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~--~~~~~~PCg-----H~~~C~~Ca~~~------~~CP~CR~~i~~  550 (557)
                      +...|.||++..  .+.+++||+     |. +-..|....      ..||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            356899999642  345678996     98 799999764      489999998764

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.09  E-value=0.012  Score=49.12  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=35.0

Q ss_pred             hccccccccccccceEEec-CCccccchhhhcCC----------CCCCC--Cccc
Q psy2747         506 EARLCKICMDKEVGVVLLP-CGHLVTCVLCASSL----------PRCPV--CREN  547 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~P-CgH~~~C~~Ca~~~----------~~CP~--CR~~  547 (557)
                      +...|.||++--.+-|.+| |||. +|..|....          ..||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4678999999999999997 9999 899997643          38999  9855

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.88  E-value=0.0052  Score=51.11  Aligned_cols=40  Identities=25%  Similarity=0.722  Sum_probs=29.8

Q ss_pred             ccccccccccccc--eE-EecCCccccchhhhcCC------------CCCCC--Cccc
Q psy2747         507 ARLCKICMDKEVG--VV-LLPCGHLVTCVLCASSL------------PRCPV--CREN  547 (557)
Q Consensus       507 ~~~C~IC~~~~~~--~~-~~PCgH~~~C~~Ca~~~------------~~CP~--CR~~  547 (557)
                      ...|.||++....  ++ +.||||. +|..|....            -.||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            5679999986443  22 3489999 899996431            37999  9987

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=92.38  E-value=0.039  Score=54.56  Aligned_cols=45  Identities=16%  Similarity=0.314  Sum_probs=37.5

Q ss_pred             HhccccccccccccceEEe-cCCccccchhhhcCC------CCCCC--Ccccccc
Q psy2747         505 REARLCKICMDKEVGVVLL-PCGHLVTCVLCASSL------PRCPV--CRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~-PCgH~~~C~~Ca~~~------~~CP~--CR~~i~~  550 (557)
                      .....|.||++.-.+-|.. .|||. +|..|....      ..||+  ||..+..
T Consensus       179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            4567899999999999975 99998 899999754      36999  9997653

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=88.97  E-value=0.2  Score=38.24  Aligned_cols=43  Identities=16%  Similarity=0.099  Sum_probs=36.9

Q ss_pred             ccccccccccccceEEe-cCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         507 ARLCKICMDKEVGVVLL-PCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~~~-PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      ...|.||.+-..+-|+. +|||. ++..|..+.    .+||+++.++..
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            35799999999999999 99999 899999865    679999998754

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=81.44  E-value=0.29  Score=37.15  Aligned_cols=44  Identities=20%  Similarity=0.437  Sum_probs=30.2

Q ss_pred             hccccccccccccceEEecCCccc----cchhhhcC------CCCCCCCccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLV----TCVLCASS------LPRCPVCRENIK  549 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~----~C~~Ca~~------~~~CP~CR~~i~  549 (557)
                      +...|.||++...+-++.||.+..    +=..|..+      -..||+|+..+.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            456899999876666678976421    23345543      268999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	557
d1jd5a_	105	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	6e-35
d1jd5a_	105	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	3e-26
d1jd5a_	105	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	3e-23
d1jd5a_	105	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	3e-23
d1jd5a_	105	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	6e-09
d2i3ha1	90	g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-I	3e-34
d2i3ha1	90	g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-I	6e-27
d2i3ha1	90	g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-I	9e-24
d2i3ha1	90	g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-I	9e-24
d2vsla1	96	g.52.1.1 (A:250-345) BIR domains of XIAP {Human (H	9e-32
d2vsla1	96	g.52.1.1 (A:250-345) BIR domains of XIAP {Human (H	9e-25
d2vsla1	96	g.52.1.1 (A:250-345) BIR domains of XIAP {Human (H	1e-21
d2vsla1	96	g.52.1.1 (A:250-345) BIR domains of XIAP {Human (H	1e-21
d2vsla1	96	g.52.1.1 (A:250-345) BIR domains of XIAP {Human (H	2e-07
d1i3oe_	111	g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sap	2e-30
d1i3oe_	111	g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sap	1e-25
d1i3oe_	111	g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sap	1e-23
d1i3oe_	111	g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sap	1e-23
d1i3oe_	111	g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sap	4e-08
d3d9ta1	87	g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sa	8e-30
d3d9ta1	87	g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sa	8e-26
d3d9ta1	87	g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sa	3e-24
d3d9ta1	87	g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sa	3e-24
d3d9ta1	87	g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sa	6e-09
d2qfaa1	137	g.52.1.1 (A:5-141) Anti-apoptotic protein survivin	4e-29
d2qfaa1	137	g.52.1.1 (A:5-141) Anti-apoptotic protein survivin	4e-23
d2qfaa1	137	g.52.1.1 (A:5-141) Anti-apoptotic protein survivin	3e-20
d2qfaa1	137	g.52.1.1 (A:5-141) Anti-apoptotic protein survivin	3e-20
d1se0a_	97	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	1e-26
d1se0a_	97	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	1e-24
d1se0a_	97	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	1e-23
d1se0a_	97	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	1e-23
d1se0a_	97	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	3e-08
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	4e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-06
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-05
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	4e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	0.002

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 105

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  124 bits (314), Expect = 6e-35
 Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
           P++P  +   +R+ TF  WPR+    P  LA AGFFY G GD VRCF C GGL  W   D
Sbjct: 5   PQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDND 64

Query: 448 EPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDE 485
           EPW +HA W  +C FV L+KG+ +I DT+ A P + +E
Sbjct: 65  EPWEQHALWLSQCRFVKLMKGQLYI-DTVAAKPVLAEE 101

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 105

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  100 bits (251), Expect = 3e-26
 Identities = 24/71 (33%), Positives = 34/71 (47%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
           Y +E+ RL TF  WP +    P  LA+ GF+Y   GD+V+C  C   +  W   D    +
Sbjct: 10  YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 69

Query: 284 HKRQSPNCPFL 294
           H      C F+
Sbjct: 70  HALWLSQCRFV 80

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 105

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 92.3 bits (229), Expect = 3e-23
 Identities = 30/72 (41%), Positives = 41/72 (56%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
             E +RLRTF++WP N      ++A+AGFFYTG    V+CF+CG  + +W  ND    +
Sbjct: 10 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 69

Query: 61 HRAKDPGCPFVK 72
          H      C FVK
Sbjct: 70 HALWLSQCRFVK 81

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 105

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 92.3 bits (229), Expect = 3e-23
 Identities = 30/72 (41%), Positives = 41/72 (56%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
              E +RLRTF++WP N      ++A+AGFFYTG    V+CF+CG  + +W  ND    +
Sbjct: 10  YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 69

Query: 197 HRAKDPGCPFVK 208
           H      C FVK
Sbjct: 70  HALWLSQCRFVK 81

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 105

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.4 bits (123), Expect = 6e-09
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
           Y +E+ RL TF  WP +    P  LA+ GF+Y   GD+
Sbjct: 10  YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDR 47

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (308), Expect = 3e-34
 Identities = 38/87 (43%), Positives = 57/87 (65%)

Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
           P  P + + + R+ +F  WP  + + P+ LA AGFF+ G  D VRCF C GGL+ W   D
Sbjct: 2   PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 61

Query: 448 EPWSEHARWFPECHFVMLVKGEQFIED 474
           +PW+EHA+WFP C F++  KG+++I +
Sbjct: 62  DPWTEHAKWFPGCQFLLRSKGQEYINN 88

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 6e-27
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
              E  RLA+F +WP++  V PE LA  GF++    DKV+C +C   +  W++GD+  +E
Sbjct: 7   MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 66

Query: 284 HKRQSPNCPFL 294
           H +  P C FL
Sbjct: 67  HAKWFPGCQFL 77

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (232), Expect = 9e-24
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          M  E  RL +F  WP  + V  + +A AGFF+TGHQ +V+CF C   + +W   D    +
Sbjct: 7  MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 66

Query: 61 HRAKDPGCPFVK 72
          H    PGC F+ 
Sbjct: 67 HAKWFPGCQFLL 78

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (232), Expect = 9e-24
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           M  E  RL +F  WP  + V  + +A AGFF+TGHQ +V+CF C   + +W   D    +
Sbjct: 7   MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 66

Query: 197 HRAKDPGCPFVK 208
           H    PGC F+ 
Sbjct: 67  HAKWFPGCQFLL 78

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 9e-32
 Identities = 34/91 (37%), Positives = 61/91 (67%), Gaps = 2/91 (2%)

Query: 384 NHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKW 443
           +  +P++P+++  ++R+ TF TW     +  + LA AGF+  G+GD V+CFHC GGL  W
Sbjct: 4   STNLPRNPSMADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDW 61

Query: 444 TAMDEPWSEHARWFPECHFVMLVKGEQFIED 474
              ++PW +HA+W+P C +++  KG+++I +
Sbjct: 62  KPSEDPWEQHAKWYPGCKYLLEQKGQEYINN 92

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.4 bits (240), Expect = 9e-25
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
                 R+ TF  W  S  V  E LA+ GFY L +GDKVKC +C   +  W+  ++   +
Sbjct: 13  MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 70

Query: 284 HKRQSPNCPFL 294
           H +  P C +L
Sbjct: 71  HAKWYPGCKYL 81

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          M    +R+ TF +W     V+ +++A+AGF+  G   +V+CF CG  +++W  ++    +
Sbjct: 13 MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 70

Query: 61 HRAKDPGCPFV---KNPEASGNVSI 82
          H    PGC ++   K  E   N+ +
Sbjct: 71 HAKWYPGCKYLLEQKGQEYINNIHL 95

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           M    +R+ TF +W     V+ +++A+AGF+  G   +V+CF CG  +++W  ++    +
Sbjct: 13  MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 70

Query: 197 HRAKDPGCPFV---KNPEASGNVSI 218
           H    PGC ++   K  E   N+ +
Sbjct: 71  HAKWYPGCKYLLEQKGQEYINNIHL 95

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
                 R+ TF  W  S  V  E LA+ GFY L +GDK
Sbjct: 13  MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDK 48

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 2e-30
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
           P++P + + ++R+ +F  WP  + L P+ LA AG +Y G GD V+CF C G L+ W   D
Sbjct: 29  PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGD 88

Query: 448 EPWSEHARWFPECHFVM 464
             WSEH R FP C FV+
Sbjct: 89  RAWSEHRRHFPNCFFVL 105

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.6 bits (248), Expect = 1e-25
 Identities = 32/71 (45%), Positives = 39/71 (54%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
              E  RL +F NWP    +TP  LA  G YY   GD+V+C  C   +  WE GD A SE
Sbjct: 34  MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSE 93

Query: 284 HKRQSPNCPFL 294
           H+R  PNC F+
Sbjct: 94  HRRHFPNCFFV 104

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.8 bits (233), Expect = 1e-23
 Identities = 31/73 (42%), Positives = 45/73 (61%)

Query: 1   MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
           M  E +RL++FQ+WP  + ++ + +A AG +YTG   +VQCFACG K+ NW   D   ++
Sbjct: 34  MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSE 93

Query: 61  HRAKDPGCPFVKN 73
           HR   P C FV  
Sbjct: 94  HRRHFPNCFFVLG 106

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.8 bits (233), Expect = 1e-23
 Identities = 31/73 (42%), Positives = 45/73 (61%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           M  E +RL++FQ+WP  + ++ + +A AG +YTG   +VQCFACG K+ NW   D   ++
Sbjct: 34  MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSE 93

Query: 197 HRAKDPGCPFVKN 209
           HR   P C FV  
Sbjct: 94  HRRHFPNCFFVLG 106

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 16/38 (42%), Positives = 19/38 (50%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
              E  RL +F NWP    +TP  LA  G YY   GD+
Sbjct: 34  MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQ 71

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 8e-30
 Identities = 40/82 (48%), Positives = 59/82 (71%)

Query: 393 LSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSE 452
           + T  +R+ TF  WP   P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW E
Sbjct: 1   MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 60

Query: 453 HARWFPECHFVMLVKGEQFIED 474
           HA+WFP C F++ +KG++F+++
Sbjct: 61  HAKWFPRCEFLIRMKGQEFVDE 82

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (246), Expect = 8e-26
 Identities = 30/68 (44%), Positives = 37/68 (54%)

Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
            + R+ TF  WP S  V PE LA  GFYY+ + D VKC  C   +  WE GD+   EH +
Sbjct: 4   HAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAK 63

Query: 287 QSPNCPFL 294
             P C FL
Sbjct: 64  WFPRCEFL 71

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (235), Expect = 3e-24
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          M    +R+RTF  WPS+ PV  +++A AGF+Y G   +V+CF C   +  W   D    +
Sbjct: 1  MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 60

Query: 61 HRAKDPGCPFVKN 73
          H    P C F+  
Sbjct: 61 HAKWFPRCEFLIR 73

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (235), Expect = 3e-24
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           M    +R+RTF  WPS+ PV  +++A AGF+Y G   +V+CF C   +  W   D    +
Sbjct: 1   MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 60

Query: 197 HRAKDPGCPFVKN 209
           H    P C F+  
Sbjct: 61  HAKWFPRCEFLIR 73

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 6e-09
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 341 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
            + R+ TF  WP S  V PE LA  GFYY+ + D 
Sbjct: 4   HAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDD 38

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 4e-29
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 388 PKHPNLSTLDSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRK 442
           P        D R+ TF  WP        P+ +A AGF +   + + D  +CF C   L  
Sbjct: 3   PPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEG 62

Query: 443 WTAMDEPWSEHARWFPECHFVMLVKGEQFI--EDTIKANPPITDEVF-FTPKFFVKSLEE 499
           W   D+P  EH +    C F+ + K  + +   + +K +                K  EE
Sbjct: 63  WEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFEE 122

Query: 500 EVRRLREA 507
             +++R A
Sbjct: 123 TAKKVRRA 130

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.2 bits (231), Expect = 4e-23
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 224 YKLESGRLATFNNWPVS--FIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGD 278
             L+  R++TF NWP       TPE +A+ GF +     + D  +C +C   +  WE  D
Sbjct: 8   PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 67

Query: 279 NAESEHKRQSPNCPFL 294
           +   EHK+ S  C FL
Sbjct: 68  DPIEEHKKHSSGCAFL 83

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (210), Expect = 3e-20
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 1   MNFERSRLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYND 55
              +  R+ TF++WP       + +R+A+AGF +   ++E    QCF C  ++  W  +D
Sbjct: 8   PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 67

Query: 56  SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLAT 97
             + +H+    GC F+          +   E  KL+  R   
Sbjct: 68  DPIEEHKKHSSGCAFLSV--KKQFEELTLGEFLKLDRERAKN 107

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (210), Expect = 3e-20
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 137 MNFERSRLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYND 191
              +  R+ TF++WP       + +R+A+AGF +   ++E    QCF C  ++  W  +D
Sbjct: 8   PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 67

Query: 192 SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLAT 233
             + +H+    GC F+          +   E  KL+  R   
Sbjct: 68  DPIEEHKKHSSGCAFLSV--KKQFEELTLGEFLKLDRERAKN 107

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 97

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  101 bits (253), Expect = 1e-26
 Identities = 42/97 (43%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
              E  RL TF +WP+ + +    LA+TG Y+   GDKVKC +C V IG WEQ D    E
Sbjct: 3   LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 61

Query: 284 HKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPF 320
           H+R SPNCP L    + T    IN  ALD   P   +
Sbjct: 62  HQRWSPNCPLL--RRRTTNNVPINAEALDRILPPISY 96

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 97

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 96.1 bits (239), Expect = 1e-24
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
           +L+  ++R+ TFT WP D  L  + LA  G ++   GD V+CF C   +  W   D+P  
Sbjct: 2   DLNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 60

Query: 452 EHARWFPECHFV 463
           EH RW P C  +
Sbjct: 61  EHQRWSPNCPLL 72

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 97

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 93.4 bits (232), Expect = 1e-23
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 1  MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
          +N E +RL+TF  WP +  +  +++A+ G ++T    +V+CF CGV+I +W   D  + +
Sbjct: 3  LNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 61

Query: 61 HRAKDPGCPFVKNPEASGNVSIENEEV 87
          H+   P CP ++    + NV I  E +
Sbjct: 62 HQRWSPNCPLLRR-RTTNNVPINAEAL 87

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 97

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 93.4 bits (232), Expect = 1e-23
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
           +N E +RL+TF  WP +  +  +++A+ G ++T    +V+CF CGV+I +W   D  + +
Sbjct: 3   LNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 61

Query: 197 HRAKDPGCPFVKNPEASGNVSIENEEV 223
           H+   P CP ++    + NV I  E +
Sbjct: 62  HQRWSPNCPLLRR-RTTNNVPINAEAL 87

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 97

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
              E  RL TF +WP+ + +    LA+TG Y+   GDK
Sbjct: 3   LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDK 39

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 489 TPKFFVKSLEEEVRRLRE----ARLCKICMDKEVGVVLLPCGHL--VTCVL--CASSLPR 540
           TP+  +K  +E+     E     +LCKIC + +  V + PCGHL   +C+     S    
Sbjct: 1   TPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG 60

Query: 541 CPVCRENIKATVRTFL 556
           CP CR  IK T    +
Sbjct: 61  CPFCRCEIKGTEPIVV 76

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 4e-08
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 498 EEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKAT 551
           EEE + LR    C+ C  +     LLPC H +      +S  +CP+C+      
Sbjct: 1   EEEFQFLR----CQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLG 50

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 494 VKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHL------VTCVLCASSLPRCPVCREN 547
           V+ ++  +  +++   C IC++     V   C H+      +  +       +CP+C+ +
Sbjct: 8   VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67

Query: 548 IK 549
           I 
Sbjct: 68  IT 69

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 510 CKICMDK-EVGVVLLPCGHL--VTCVL-CASSLPRCPVCRENIKATVRTFLS 557
           C IC++      + LPC H     C+       P CP+C+  +++ V T  S
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIES 59

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 504 LREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCRENIKAT-----VR 553
             ++  C+IC       V   C H + C +C           CP CR     T     V+
Sbjct: 20  FVKSISCQICEHILADPVETSCKH-LFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVK 78

Query: 554 TFLS 557
           +FL+
Sbjct: 79  SFLN 82

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 495 KSLEEEVRRLREARLCKICMDK-EVGVVLLPCGHLVTCVLCASSL--PRCPVCRENIKAT 551
                 + RL +   C  C +     V L  C H + C  C S      CPVC       
Sbjct: 10  AHSRAALDRLEKLLRCSRCTNILREPVCLGGCEH-IFCSNCVSDCIGTGCPVCYTPAWIQ 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	557
d2i3ha1	90	BIR-containing protein 7 (ML-IAP, livin) {Human (H	99.95
d2vsla1	96	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	99.95
d1jd5a_	105	BIR domains of DIAP1 {Fruit fly (Drosophila melano	99.94
d1se0a_	97	BIR domains of DIAP1 {Fruit fly (Drosophila melano	99.94
d3d9ta1	87	2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2i3ha1	90	BIR-containing protein 7 (ML-IAP, livin) {Human (H	99.93
d3d9ta1	87	2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1i3oe_	111	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	99.92
d1i3oe_	111	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	99.92
d2vsla1	96	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	99.92
d1se0a_	97	BIR domains of DIAP1 {Fruit fly (Drosophila melano	99.91
d1jd5a_	105	BIR domains of DIAP1 {Fruit fly (Drosophila melano	99.91
d2qfaa1	137	Anti-apoptotic protein survivin {Human (Homo sapie	99.89
d2qfaa1	137	Anti-apoptotic protein survivin {Human (Homo sapie	99.87
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.27
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.12
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.09
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.07
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	97.9
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	97.87
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.85
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.85
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	97.41
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.29
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	97.21
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	97.02
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	96.98
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	96.47
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	96.1
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	93.83

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-29  Score=210.32  Aligned_cols=88  Identities=43%  Similarity=1.044  Sum_probs=86.1

Q ss_pred             CCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchhhhhh
Q psy2747         388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVK  467 (557)
Q Consensus       388 p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv~~~k  467 (557)
                      |.+|+|.++++||+||.+||...++++++||+|||||+|.+|.|+||+|++.|.+|+.+|+||.||++|+|+|.|+++.|
T Consensus         2 P~~~~~~~~~~Rl~TF~~Wp~~~~~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~Ddp~~eH~r~~p~C~fv~~~k   81 (90)
T d2i3ha1           2 PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSK   81 (90)
T ss_dssp             CSCGGGCCHHHHHHTTTTCSCTTTSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCccccCHHHHHHHHHhCCCCCCCCHHHHHhcCCEECCCCCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCcchHHhc
Confidence            78999999999999999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhh
Q psy2747         468 GEQFIEDT  475 (557)
Q Consensus       468 G~~fv~~v  475 (557)
                      |++||++|
T Consensus        82 ~~~fv~~i   89 (90)
T d2i3ha1          82 GQEYINNI   89 (90)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHhhc
Confidence            99999987

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-28  Score=206.62  Aligned_cols=90  Identities=38%  Similarity=1.031  Sum_probs=85.4

Q ss_pred             CCCCCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchhh
Q psy2747         385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVM  464 (557)
Q Consensus       385 ~~~p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv~  464 (557)
                      ...|.+|+|.++++||+||++||.  ..++++||+|||||+|.+|.|+||+||++|.+|+.+|+||.||++|+|.|.|++
T Consensus         5 ~~~P~~p~m~~~~~Rl~TF~~Wp~--~~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~D~P~~eH~~~~p~C~fv~   82 (96)
T d2vsla1           5 TNLPRNPSMADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLL   82 (96)
T ss_dssp             SSSCSCGGGCSHHHHHHTTTTCCS--SSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHHHH
T ss_pred             CCCCCCccccCHHHHHHHHccCCC--CCCHHHHHHhCCEEcCCCCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCeehH
Confidence            346899999999999999999995  467999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHhhh
Q psy2747         465 LVKGEQFIEDTI  476 (557)
Q Consensus       465 ~~kG~~fv~~v~  476 (557)
                      ..||++||++|+
T Consensus        83 ~~kg~~~v~~v~   94 (96)
T d2vsla1          83 EQKGQEYINNIH   94 (96)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hccChhhhhccc
Confidence            999999999985

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=2.8e-28  Score=209.06  Aligned_cols=93  Identities=45%  Similarity=0.998  Sum_probs=89.1

Q ss_pred             CCCCCCCCcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchhhh
Q psy2747         386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVML  465 (557)
Q Consensus       386 ~~p~~p~~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv~~  465 (557)
                      ..|.||+|.++++||+||.+||...+++++.||+|||||+|.+|.|+||+||+.|.+|+.+|+||.||++|+|.|.|+++
T Consensus         3 ~~p~~p~~~~~~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~D~p~~eH~~~~P~C~fv~~   82 (105)
T d1jd5a_           3 YFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKL   82 (105)
T ss_dssp             CCCSCGGGCSHHHHHHHGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHHHH
T ss_pred             CCCCCCCccCHHHHHHHHHhCCCCCCcCHHHHHHcCCEECCCCCEEEeCccCCCccCCCCCCCHHHHHHHHCcCCcchhh
Confidence            36899999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHhhhhc
Q psy2747         466 VKGEQFIEDTIKA  478 (557)
Q Consensus       466 ~kG~~fv~~v~~~  478 (557)
                      .||++||++++..
T Consensus        83 ~k~~~fv~~~~~~   95 (105)
T d1jd5a_          83 MKGQLYIDTVAAK   95 (105)
T ss_dssp             HHCHHHHHHHHHS
T ss_pred             hCCHHHHHHHhcc
Confidence            9999999998653

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=5.5e-28  Score=204.15  Aligned_cols=82  Identities=33%  Similarity=0.815  Sum_probs=76.7

Q ss_pred             CcchHHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCcCCCCCCCc
Q psy2747           1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNV   80 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~~~~~~n~   80 (557)
                      |+.|++||+||.+||.. .+++++||+|||||||.+|+|+||+||++|.+|+++|+|+++|++++|+|+|++.. .++|+
T Consensus         3 m~~e~~Rl~TF~~Wp~~-~~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~D~p~~eH~r~~p~C~f~~~~-~~~nv   80 (97)
T d1se0a_           3 LNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRR-TTNNV   80 (97)
T ss_dssp             TTBHHHHHTTCTTCCCT-TSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTTTTTC-CCCCB
T ss_pred             hHhHHHHHHHHhhCCcC-cCCHHHHHhcCCEECCCCCEEEeCcCCCCcCCCCCCCCHHHHHHHHCcCCcccccC-CCCce
Confidence            89999999999999985 58999999999999999999999999999999999999999999999999999976 57788


Q ss_pred             cccc
Q psy2747          81 SIEN   84 (557)
Q Consensus        81 ~~~~   84 (557)
                      ++..
T Consensus        81 p~~~   84 (97)
T d1se0a_          81 PINA   84 (97)
T ss_dssp             CSCH
T ss_pred             ecCC
Confidence            7754

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.1e-28  Score=200.01  Aligned_cols=86  Identities=47%  Similarity=1.097  Sum_probs=82.2

Q ss_pred             CcChHhHhhhccCCCCCCCCChhHhhhcCccccCCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcchhhhhhhhhHH
Q psy2747         393 LSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFI  472 (557)
Q Consensus       393 ~~~~~~Rl~Sf~~wp~~~~~~~~~LA~AGFfy~g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~fv~~~kG~~fv  472 (557)
                      |.++++||+||.+||.+.++++++||+|||||+|.+|.|+||+||+.|.+|+++|+||.||++|+|+|.|+++.||++||
T Consensus         1 m~~~~~Rl~TF~~Wp~~~~~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~fv~~~k~~~fv   80 (87)
T d3d9ta1           1 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFV   80 (87)
T ss_dssp             GCSHHHHHHGGGGCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHHHHHHHCHHHH
T ss_pred             CccHHHHHHHHhcCCCCCCcCHHHHHHcCCEECCCCCEEEeCcCCCEecCcCCCCcchHHHHHHCcCCchhHhhCCHHHH
Confidence            46789999999999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhc
Q psy2747         473 EDTIKA  478 (557)
Q Consensus       473 ~~v~~~  478 (557)
                      ++|+.+
T Consensus        81 ~~v~~~   86 (87)
T d3d9ta1          81 DEIQGR   86 (87)
T ss_dssp             HHHTTC
T ss_pred             HHHHhc
Confidence            999764

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.2e-27  Score=196.17  Aligned_cols=86  Identities=36%  Similarity=0.644  Sum_probs=80.5

Q ss_pred             ccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccchh
Q psy2747         221 EEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQA  300 (557)
Q Consensus       221 ~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~~  300 (557)
                      +++|.++++||+||.+||+...+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|.|+|++..||.
T Consensus         4 ~~~~~~~~~Rl~TF~~Wp~~~~~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~Ddp~~eH~r~~p~C~fv~~~k~~   83 (90)
T d2i3ha1           4 FPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQ   83 (90)
T ss_dssp             CGGGCCHHHHHHTTTTCSCTTTSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHHHHHHCH
T ss_pred             CccccCHHHHHHHHHhCCCCCCCCHHHHHhcCCEECCCCCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCcchHHhcCH
Confidence            56899999999999999998778999999999999999999999999999999999999999999999999999988887


Q ss_pred             hhhhhh
Q psy2747         301 TQANMI  306 (557)
Q Consensus       301 ~~~~~~  306 (557)
                      .+++.|
T Consensus        84 ~fv~~i   89 (90)
T d2i3ha1          84 EYINNI   89 (90)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            776654

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-26  Score=191.34  Aligned_cols=83  Identities=39%  Similarity=0.714  Sum_probs=77.3

Q ss_pred             cccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccchhhhh
Q psy2747         224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQATQA  303 (557)
Q Consensus       224 ~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~~~~~  303 (557)
                      |.++++||+||.+||+...+++++||+|||||+|.+|.|+||+|+++|.+|+++||||.||++|+|+|+|++..||+.+.
T Consensus         1 m~~~~~Rl~TF~~Wp~~~~~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~fv~~~k~~~fv   80 (87)
T d3d9ta1           1 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFV   80 (87)
T ss_dssp             GCSHHHHHHGGGGCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHHHHHHHCHHHH
T ss_pred             CccHHHHHHHHhcCCCCCCcCHHHHHHcCCEECCCCCEEEeCcCCCEecCcCCCCcchHHHHHHCcCCchhHhhCCHHHH
Confidence            67899999999999988777999999999999999999999999999999999999999999999999999987877666


Q ss_pred             hhh
Q psy2747         304 NMI  306 (557)
Q Consensus       304 ~~~  306 (557)
                      +.|
T Consensus        81 ~~v   83 (87)
T d3d9ta1          81 DEI   83 (87)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-26  Score=200.18  Aligned_cols=74  Identities=42%  Similarity=0.866  Sum_probs=71.5

Q ss_pred             CcchHHHHhhccCCCCCCCCCHHHHHHcCceeecCCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCcCC
Q psy2747           1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNP   74 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~~   74 (557)
                      |..|++||+||.+||...+++++.||+|||||||.+|+|+||+||++|.+|+++|+|+++|++++|+|+||++.
T Consensus        34 m~~ee~Rl~TF~~Wp~~~~~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~DdP~~eH~r~sP~C~fvl~~  107 (111)
T d1i3oe_          34 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFVLGR  107 (111)
T ss_dssp             GCSHHHHHTTCTTCCSSCSSCHHHHHHTTEEEEEETTEEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHTC
T ss_pred             ccCHHHHHHHHHhCCCccCcCHHHHHHcCCEECCCCCeEEeCcCCCEeCCCCCCCCHHHHHHHHCcCCceeecc
Confidence            78899999999999988889999999999999999999999999999999999999999999999999999865

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-26  Score=199.86  Aligned_cols=103  Identities=34%  Similarity=0.547  Sum_probs=90.9

Q ss_pred             CCChHHHhhcCCCCCCCccCCCCCCCcccCCccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccC
Q psy2747         190 NDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSV  269 (557)
Q Consensus       190 ~D~p~~eH~~~~p~C~f~~~~~~~~~~~~~~~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~  269 (557)
                      .|+|.+.|.++.+.|..+....   ....+..+.|.++++||+||.+||....+++++||+|||||+|.+|.|+||+|++
T Consensus         3 ~d~p~~~~~~~~~~~~~~~~~~---~~~~P~~~~m~~ee~Rl~TF~~Wp~~~~~~~~~LA~aGFyytg~~D~v~Cf~C~~   79 (111)
T d1i3oe_           3 LDRPSETHADYLLRTGQVVDIS---DTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGG   79 (111)
T ss_dssp             TTSTTSCHHHHHHHTTCCCBCG---GGTCSSCGGGCSHHHHHTTCTTCCSSCSSCHHHHHHTTEEEEEETTEEEETTTCC
T ss_pred             cCCchhhhhhhhhccCcccccc---cCCCCCCccccCHHHHHHHHHhCCCccCcCHHHHHHcCCEECCCCCeEEeCcCCC
Confidence            4789999999888898775431   1122346689999999999999998777799999999999999999999999999


Q ss_pred             cccccCCCCChHHHhhhcCCCCcccc
Q psy2747         270 IIGRWEQGDNAESEHKRQSPNCPFLA  295 (557)
Q Consensus       270 ~l~~W~~~Ddp~~eH~~~~p~C~f~~  295 (557)
                      +|.+|+++||||.||++|+|+|+|++
T Consensus        80 ~l~~W~~~DdP~~eH~r~sP~C~fvl  105 (111)
T d1i3oe_          80 KLKNWEPGDRAWSEHRRHFPNCFFVL  105 (111)
T ss_dssp             EECCCCTTCCHHHHHHHHCTTCHHHH
T ss_pred             EeCCCCCCCCHHHHHHHHCcCCceee
Confidence            99999999999999999999999998

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.3e-26  Score=191.80  Aligned_cols=87  Identities=32%  Similarity=0.588  Sum_probs=80.5

Q ss_pred             CccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccch
Q psy2747         220 NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQ  299 (557)
Q Consensus       220 ~~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~  299 (557)
                      ..++|.++++||+||.+||+.  +++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|+||+..||
T Consensus         9 ~~p~m~~~~~Rl~TF~~Wp~~--~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~D~P~~eH~~~~p~C~fv~~~kg   86 (96)
T d2vsla1           9 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKG   86 (96)
T ss_dssp             SCGGGCSHHHHHHTTTTCCSS--SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCccccCHHHHHHHHccCCCC--CCHHHHHHhCCEEcCCCCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCeehHhccC
Confidence            367999999999999999975  489999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhhhhhh
Q psy2747         300 ATQANMINL  308 (557)
Q Consensus       300 ~~~~~~~~~  308 (557)
                      ..+.+.|.|
T Consensus        87 ~~~v~~v~~   95 (96)
T d2vsla1          87 QEYINNIHL   95 (96)
T ss_dssp             HHHHHHHTC
T ss_pred             hhhhhcccc
Confidence            887776654

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=1.6e-25  Score=188.88  Aligned_cols=81  Identities=33%  Similarity=0.830  Sum_probs=74.8

Q ss_pred             cchhHHHHHhhccCCCCCCccCHHHHHHcCceecCCCCceeccccccccccccCCCChHHHhhcCCCCCCCccCCCCCCC
Q psy2747         136 TMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGN  215 (557)
Q Consensus       136 ~~~~e~~Rl~TF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~w~~~D~p~~eH~~~~p~C~f~~~~~~~~~  215 (557)
                      +|..|++||+||.+||... +++++||+|||||+|..|+|+||+|++.|.+|+.+|+|+.+|++++|+|+|+++. .++|
T Consensus         2 dm~~e~~Rl~TF~~Wp~~~-~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~D~p~~eH~r~~p~C~f~~~~-~~~n   79 (97)
T d1se0a_           2 DLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRR-TTNN   79 (97)
T ss_dssp             CTTBHHHHHTTCTTCCCTT-SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTTTTTC-CCCC
T ss_pred             chHhHHHHHHHHhhCCcCc-CCHHHHHhcCCEECCCCCEEEeCcCCCCcCCCCCCCCHHHHHHHHCcCCcccccC-CCCc
Confidence            5889999999999999875 8899999999999999999999999999999999999999999999999999875 3566


Q ss_pred             ccc
Q psy2747         216 VSI  218 (557)
Q Consensus       216 ~~~  218 (557)
                      +++
T Consensus        80 vp~   82 (97)
T d1se0a_          80 VPI   82 (97)
T ss_dssp             BCS
T ss_pred             eec
Confidence            664

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=9.7e-26  Score=193.13  Aligned_cols=90  Identities=27%  Similarity=0.567  Sum_probs=82.8

Q ss_pred             CccccccHHHHHccCCCCCCCCCCCHHHHHhcCceeccCCCeEEeeeccCcccccCCCCChHHHhhhcCCCCccccccch
Q psy2747         220 NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQ  299 (557)
Q Consensus       220 ~~~~~~~~~~Rl~SF~~wp~~~~~~~~~LA~aGFyy~g~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~f~~~~~~  299 (557)
                      .+++|.++++||+||.+||+...++++.||+|||||+|.+|.|+||+|+++|.+|+.+||||.+|++|+|.|+||+..||
T Consensus         6 ~~p~~~~~~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~D~p~~eH~~~~P~C~fv~~~k~   85 (105)
T d1jd5a_           6 QYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKLMKG   85 (105)
T ss_dssp             SCGGGCSHHHHHHHGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHHHHHHC
T ss_pred             CCCCccCHHHHHHHHHhCCCCCCcCHHHHHHcCCEECCCCCEEEeCccCCCccCCCCCCCHHHHHHHHCcCCcchhhhCC
Confidence            35799999999999999999877899999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhhhhhhh
Q psy2747         300 ATQANMINLR  309 (557)
Q Consensus       300 ~~~~~~~~~~  309 (557)
                      +.+++.+..+
T Consensus        86 ~~fv~~~~~~   95 (105)
T d1jd5a_          86 QLYIDTVAAK   95 (105)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhcc
Confidence            7776666543

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-24  Score=194.07  Aligned_cols=75  Identities=27%  Similarity=0.643  Sum_probs=69.3

Q ss_pred             CcchHHHHhhccCCCC--CCCCCHHHHHHcCceeec---CCCceeeeeecceecCCccCCchHHhhhcCCCCCCCCcCCC
Q psy2747           1 MNFERSRLRTFQSWPS--NSPVSSKRIAKAGFFYTG---HQHEVQCFACGVKISNWTYNDSVMAKHRAKDPGCPFVKNPE   75 (557)
Q Consensus         1 M~~e~~Rl~TF~~wp~--~~~~~~~~LA~aGFyytg---~~d~V~Cf~Cg~~l~~w~~~d~~~~~H~~~~p~C~f~~~~~   75 (557)
                      |.+|++||+||.+||.  ..+++++.||+|||||+|   .+|.|+||+|+++|++|+++||||++|++++|+|+|++...
T Consensus         8 ~~~~~~Rl~TF~~WP~~~~~~~~~~~LA~AGFyy~~~~~~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~fv~~~k   87 (137)
T d2qfaa1           8 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKK   87 (137)
T ss_dssp             GGSHHHHHHTCCSCSCCSSCSSCHHHHHHTTEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCGGGGCCS
T ss_pred             cccHHHHHHHHhcCCCccCCCCCHHHHHhcCceECCCCCCCCeEEecccCCCcCCCCCCCCHHHHHHHHCcCCceEeeeC
Confidence            7889999999999995  467999999999999965   47999999999999999999999999999999999998654

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.8e-23  Score=184.80  Aligned_cols=86  Identities=29%  Similarity=0.522  Sum_probs=76.9

Q ss_pred             CCCCCCCcChHhHhhhccCCCCC--CCCChhHhhhcCcccc---CCCCeEEEEecCCceeeccCCCCcHHHHhhhcCCcc
Q psy2747         387 VPKHPNLSTLDSRVLTFTTWPRD--SPLGPQSLAVAGFFYD---GQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECH  461 (557)
Q Consensus       387 ~p~~p~~~~~~~Rl~Sf~~wp~~--~~~~~~~LA~AGFfy~---g~~D~v~Cf~Cg~~l~~w~~~Ddpw~eH~~~~p~C~  461 (557)
                      .|...+|..++.||+||.+||..  .+++++.||+|||||+   +.+|.|+||+|+++|.+|+.+||||.||++|+|.|.
T Consensus         2 ~p~~~~~~~~~~Rl~TF~~WP~~~~~~~~~~~LA~AGFyy~~~~~~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~   81 (137)
T d2qfaa1           2 LPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCA   81 (137)
T ss_dssp             CCTTTGGGSHHHHHHTCCSCSCCSSCSSCHHHHHHTTEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCG
T ss_pred             CCCCcccccHHHHHHHHhcCCCccCCCCCHHHHHhcCceECCCCCCCCeEEecccCCCcCCCCCCCCHHHHHHHHCcCCc
Confidence            46677888999999999999964  4678999999999995   567999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHH
Q psy2747         462 FVMLVKGEQFI  472 (557)
Q Consensus       462 fv~~~kG~~fv  472 (557)
                      |+.+.||.+.+
T Consensus        82 fv~~~k~~~~~   92 (137)
T d2qfaa1          82 FLSVKKQFEEL   92 (137)
T ss_dssp             GGGCCSCGGGC
T ss_pred             eEeeeCCCccc
Confidence            99999986443

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=8.6e-09  Score=82.44  Aligned_cols=47  Identities=45%  Similarity=0.952  Sum_probs=40.6

Q ss_pred             cccccccccccceEEecCCccccchhhhcC-----CCCCCCCccccccEEEEe
Q psy2747         508 RLCKICMDKEVGVVLLPCGHLVTCVLCASS-----LPRCPVCRENIKATVRTF  555 (557)
Q Consensus       508 ~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~CP~CR~~i~~~i~i~  555 (557)
                      ..|.||++...+.+++||||. +|..|...     ..+||+||..|.....|.
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~   75 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV   75 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCE-ECHHHHHHHHHTTCCSCTTTCCCCCCCCCSS
T ss_pred             CCCccCCCcCCCeEEeCCCCe-eeHHHHHHHHHHCcCcCCCCCcCccCCceee
Confidence            469999999999999999998 89999854     367999999998876554

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=9.2e-08  Score=71.14  Aligned_cols=43  Identities=28%  Similarity=0.621  Sum_probs=38.2

Q ss_pred             ccccccccccccceEEecCCccccchhhhcCC-CCCCCCcccccc
Q psy2747         507 ARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-PRCPVCRENIKA  550 (557)
Q Consensus       507 ~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-~~CP~CR~~i~~  550 (557)
                      ...|.||++...+.+++||||. +|..|..+. .+||+||++|..
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~-fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CCCCcccCcccCCCEEecCCCH-HhHHHHHcCCCcCcCCCCcccC
Confidence            3589999999999999999997 899998776 699999998863

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.12  E-value=3.3e-07  Score=70.73  Aligned_cols=46  Identities=33%  Similarity=0.907  Sum_probs=37.9

Q ss_pred             ccccccccccccc-eEEecCCccccchhhhcCC----CCCCCCccccccEEE
Q psy2747         507 ARLCKICMDKEVG-VVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVR  553 (557)
Q Consensus       507 ~~~C~IC~~~~~~-~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~~i~  553 (557)
                      ...|.||++...+ ++++||||. +|..|....    .+||+||++|..+..
T Consensus         5 ~d~C~IC~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~i~~~~~   55 (68)
T d1chca_           5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCCccCCcCccCCcEEeCCCCc-CcHHHHHHHHHhCCcCCCCCcchHhhcc
Confidence            4579999998755 566899997 999999754    799999999987653

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=5.8e-07  Score=72.64  Aligned_cols=46  Identities=28%  Similarity=0.584  Sum_probs=39.7

Q ss_pred             HHhccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         504 LREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       504 ~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      +.++..|.||++...+.+.+||||. +|..|....     .+||+||.++..
T Consensus        20 ~~~~l~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          20 FVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             hccCcCCccCCcchhcceecCCCCh-hhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            3456789999999999999999999 999999753     589999998753

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.5e-07  Score=68.87  Aligned_cols=44  Identities=25%  Similarity=0.705  Sum_probs=34.6

Q ss_pred             hcccccccccc-----ccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         506 EARLCKICMDK-----EVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~-----~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      ++..|.||++.     ...+++.||||. +|..|....     ..||+||++|..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChH-hhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            45689999974     334566799998 899999753     579999999865

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.8e-06  Score=71.98  Aligned_cols=51  Identities=25%  Similarity=0.735  Sum_probs=41.9

Q ss_pred             HHHHHHHHhccccccccccccceEEecCCccccchhhhcCC-------CCCCCCccccc
Q psy2747         498 EEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-------PRCPVCRENIK  549 (557)
Q Consensus       498 ~~~~~~~~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-------~~CP~CR~~i~  549 (557)
                      +.-+..+.+...|.||++.-.+.+.+||||. +|..|....       ..||+||.++.
T Consensus        12 ~~~~~~l~~~l~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          12 QNVINAMQKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HHHHHHHHHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             HHHHHhcccCcCCCccCchhCCeEEcCCCCc-hhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            3445666777889999999999999999998 999997532       48999999875

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3e-06  Score=69.76  Aligned_cols=53  Identities=28%  Similarity=0.531  Sum_probs=43.1

Q ss_pred             hHHHHHHHHhccccccccccccceEEe-cCCccccchhhhcCC--CCCCCCcccccc
Q psy2747         497 LEEEVRRLREARLCKICMDKEVGVVLL-PCGHLVTCVLCASSL--PRCPVCRENIKA  550 (557)
Q Consensus       497 ~~~~~~~~~~~~~C~IC~~~~~~~~~~-PCgH~~~C~~Ca~~~--~~CP~CR~~i~~  550 (557)
                      ..+.++.+.+...|.||++.-.+.+.+ ||||. +|..|..+.  ..||+||.++..
T Consensus        12 ~~~~l~~l~~~l~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~~   67 (97)
T d1jm7b_          12 SRAALDRLEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAWI   67 (97)
T ss_dssp             HHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCSC
T ss_pred             HHHHHHhhhhcCCCccCCchhhcCceeCCCCCc-hhHHHHHHHHhccccccCCcCch
Confidence            345567778888999999988887754 89998 899998765  679999987753

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.85  E-value=2.4e-06  Score=62.98  Aligned_cols=43  Identities=26%  Similarity=0.662  Sum_probs=33.6

Q ss_pred             hcccccccccccc---ceEEe-cCCccccchhhhcCC----CCCCCCccccc
Q psy2747         506 EARLCKICMDKEV---GVVLL-PCGHLVTCVLCASSL----PRCPVCRENIK  549 (557)
Q Consensus       506 ~~~~C~IC~~~~~---~~~~~-PCgH~~~C~~Ca~~~----~~CP~CR~~i~  549 (557)
                      +...|.||++.-.   .++.+ +|||. +|..|..+.    ..||+||.+|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCc-ccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4567999997643   34445 69997 899999864    79999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.3e-06  Score=63.77  Aligned_cols=41  Identities=27%  Similarity=0.749  Sum_probs=31.7

Q ss_pred             ccccccccc----cceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         509 LCKICMDKE----VGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       509 ~C~IC~~~~----~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      .|.||++.-    ..+++.||||. +|..|..++     .+||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~-~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCC-CCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCc-cchHHHHHHHhhcCCCCCccCCcCCC
Confidence            699998742    33455699998 899998763     469999998753

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=2.6e-05  Score=57.39  Aligned_cols=41  Identities=20%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             ccccccccccceEEec-CCccccchhhhcCC----CCCCCCcccccc
Q psy2747         509 LCKICMDKEVGVVLLP-CGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       509 ~C~IC~~~~~~~~~~P-CgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      .|.||++--.+-+..| |||. +|.+|..+.    .+||+||+++..
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~-fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCccCCchHHhcCccCCCCCc-ccHHHHHHHHhhccCCCccCCcCCH
Confidence            6999999999999886 9999 899998764    799999998764

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=2.6e-05  Score=65.74  Aligned_cols=42  Identities=33%  Similarity=0.663  Sum_probs=32.6

Q ss_pred             ccccccccccc------------------cceEEecCCccccchhhhcCC---------CCCCCCccccc
Q psy2747         507 ARLCKICMDKE------------------VGVVLLPCGHLVTCVLCASSL---------PRCPVCRENIK  549 (557)
Q Consensus       507 ~~~C~IC~~~~------------------~~~~~~PCgH~~~C~~Ca~~~---------~~CP~CR~~i~  549 (557)
                      ...|.||++.-                  ..+.++||||. +|..|....         .+||+||+.+.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~-FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCCh-hhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            45799999752                  34678899999 899998753         26999998763

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=5.7e-05  Score=59.53  Aligned_cols=45  Identities=16%  Similarity=0.043  Sum_probs=38.7

Q ss_pred             HhccccccccccccceEEecCCccccchhhhcCC-----CCCCCCcccccc
Q psy2747         505 REARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIKA  550 (557)
Q Consensus       505 ~~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~CP~CR~~i~~  550 (557)
                      .+...|.||++--.+-|.+||||. +|..|....     ..||+||.++..
T Consensus         5 P~~l~CpIc~~l~~dPv~~~cGht-fc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           5 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CccccCcCcCchhhhhcccCCcCe-ecHHHHHHHHhcCCccCCCccccccc
Confidence            356789999999999999999997 899997653     579999998864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.02  E-value=0.00012  Score=57.28  Aligned_cols=44  Identities=18%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             hccccccccccccceEEecCCccccchhhhcC-----CCCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASS-----LPRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~CP~CR~~i~~  550 (557)
                      ++..|.||++--.+-|.+||||. +|..|...     ...||.|+.++..
T Consensus         7 ~~l~CpIc~~~m~dPV~~~cgh~-fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           7 EYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCcCcCchhhCceEccCCCc-chHHHHHHHHHHCCCCCCcccccCCc
Confidence            46789999999999999999999 89999864     2579999999865

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00014  Score=58.38  Aligned_cols=30  Identities=23%  Similarity=0.395  Sum_probs=25.6

Q ss_pred             ceEEecCCccccchhhhcCC----CCCCCCccccc
Q psy2747         519 GVVLLPCGHLVTCVLCASSL----PRCPVCRENIK  549 (557)
Q Consensus       519 ~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~  549 (557)
                      .++..||||. ++..|...-    ..||+||++..
T Consensus        51 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          51 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CeEEccccCc-ccHHHHHHHHHHCCcCCCCCCccc
Confidence            4678899999 999999753    79999999764

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=96.47  E-value=0.0002  Score=53.05  Aligned_cols=43  Identities=21%  Similarity=0.491  Sum_probs=35.2

Q ss_pred             hccccccccccccceEEecCC-----ccccchhhhcCC------CCCCCCccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCG-----HLVTCVLCASSL------PRCPVCRENIK  549 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCg-----H~~~C~~Ca~~~------~~CP~CR~~i~  549 (557)
                      +...|.||++...+..+.||+     |. ++..|....      .+||+||+++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~-~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCE-EcHHHHHHHHhhCCCCCCcccCCeee
Confidence            467899999987777778886     77 899999763      48999999875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0011  Score=54.03  Aligned_cols=45  Identities=16%  Similarity=0.107  Sum_probs=40.1

Q ss_pred             hccccccccccccceEEecCCccccchhhhcCC----CCCCCCcccccc
Q psy2747         506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKA  550 (557)
Q Consensus       506 ~~~~C~IC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~CP~CR~~i~~  550 (557)
                      ++..|.||.+--.+.|++||||..+|..|....    ..||+||.++..
T Consensus        21 ~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            468999999999999999999877999999863    799999998864

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.0095  Score=47.48  Aligned_cols=40  Identities=23%  Similarity=0.590  Sum_probs=29.0

Q ss_pred             cccccccccccc--c-eEEecCCccccchhhhcCC------------CCCCCCccc
Q psy2747         507 ARLCKICMDKEV--G-VVLLPCGHLVTCVLCASSL------------PRCPVCREN  547 (557)
Q Consensus       507 ~~~C~IC~~~~~--~-~~~~PCgH~~~C~~Ca~~~------------~~CP~CR~~  547 (557)
                      ...|.||++...  + +.+.+|||. +|..|....            -+||.|.-+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCcCccCCCcccCCceEEECCCCCE-eCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            457999998643  3 456689998 899998631            269986543