Psyllid ID: psy2752

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MAEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTESLETGVSDEERRKVGKYKERTNP
Secondary Structure (PSIPRED)
cccccccccEEEEEEEcEEEccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEcEEcEccEEEEEEEEccccHHHcEEEEHHHEEcHHHHHHHcHHHHHHHcHccccccccccccccccccHHHccccccccccc
Coil and Loop (DISEMBL)
MAEEEQEEVYVIEKIVDKKLTKEGKVKYFLKwkdypesdntwemaedLDCDDLIRAFEENWAVEQEAKkkageptesletgvsdeerrkvgkykertnp
Flexible Loop (DISEMBL)
maeeeqeevyviekivdkkltkegkvkyflkwkdypesdnTWEMAEDLDCDDLIRAFEENWAVEQeakkkageptesletgvsdeerrkvgkykertnp
Low Complexity Region (SEG)
MAeeeqeevyviekivDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTESLETGVSDEERRKVGKYKERTNP
Disordered region (IsUnstruct)
********VYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAV************************************
Disordered Region (DISOPRED)
****EQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIR********************************************
Disordered Region (DISEMBL)
********VYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVE***********************************
Disordered Region (DISPRO)
******EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAV************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTESLETGVSDEERRKVGKYKERTNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
P05205	206	Heterochromatin protein 1	no	N/A	0.484	0.233	0.571	2e-11
Q5R6X7	183	Chromobox protein homolog	yes	N/A	0.545	0.295	0.527	2e-10
Q13185	183	Chromobox protein homolog	yes	N/A	0.545	0.295	0.527	2e-10
P29227	213	Heterochromatin protein 1	N/A	N/A	0.484	0.225	0.551	5e-10
P23198	183	Chromobox protein homolog	yes	N/A	0.555	0.300	0.5	1e-09
Q61686	191	Chromobox protein homolog	no	N/A	0.474	0.246	0.5	6e-08
P45973	191	Chromobox protein homolog	no	N/A	0.474	0.246	0.5	9e-08
P83917	185	Chromobox protein homolog	no	N/A	0.565	0.302	0.456	6e-07
P83916	185	Chromobox protein homolog	no	N/A	0.565	0.302	0.456	6e-07
Q944N1	399	Chromo domain protein LHP	N/A	N/A	0.545	0.135	0.464	1e-05

>sp|P05205|HP1_DROME Heterochromatin protein 1 OS=Drosophila melanogaster GN=Su(var)205 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFE 58
          Y +EKI+D+++ K GKV+Y+LKWK YPE++NTWE   +LDC DLI+ +E
Sbjct: 24 YAVEKIIDRRVRK-GKVEYYLKWKGYPETENTWEPENNLDCQDLIQQYE 71

Structural component of heterochromatin, involved in gene repression and the modification of position-effect-variegation. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression.
Drosophila melanogaster (taxid: 7227)

>sp|Q5R6X7|CBX3_PONAB Chromobox protein homolog 3 OS=Pongo abelii GN=CBX3 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 43/55 (78%), Gaps = 1/55 (1%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
          EE + E +V+EK++D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI AF
Sbjct: 23 EEAEPEEFVVEKVLDRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF 76

Seems to be involved in transcriptional silencing in heterochromatin-like complexes. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. May contribute to the association of the heterochromatin with the inner nuclear membrane through its interaction with lamin B receptor (LBR). Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Pongo abelii (taxid: 9601)

>sp|Q13185|CBX3_HUMAN Chromobox protein homolog 3 OS=Homo sapiens GN=CBX3 PE=1 SV=4

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 43/55 (78%), Gaps = 1/55 (1%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
          EE + E +V+EK++D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI AF
Sbjct: 23 EEAEPEEFVVEKVLDRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF 76

Seems to be involved in transcriptional silencing in heterochromatin-like complexes. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. May contribute to the association of the heterochromatin with the inner nuclear membrane through its interaction with lamin B receptor (LBR). Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Homo sapiens (taxid: 9606)

>sp|P29227|HP1_DROVI Heterochromatin protein 1 OS=Drosophila virilis GN=Su(var)205 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFE 58
          Y +EKI+D+++ K GKV+Y+LKWK Y E++NTWE   +LDC DLI+ +E
Sbjct: 24 YAVEKILDRRVRK-GKVEYYLKWKGYAETENTWEPEGNLDCQDLIQQYE 71

Structural component of heterochromatin, involved in gene repression and the modification of position-effect-variegation. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression.

Drosophila virilis (taxid: 7244)

>sp|P23198|CBX3_MOUSE Chromobox protein homolog 3 OS=Mus musculus GN=Cbx3 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 42/56 (75%), Gaps = 1/56 (1%)

Query: 2  AEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
           EE + E +V+EK++D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI  F
Sbjct: 22 VEEAEPEEFVVEKVLDRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEDF 76

Component of heterochromatin. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. Probably involved in the repression of many genes located in euchromatin, such as E2F1, MYC and CDC25A. Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Mus musculus (taxid: 10090)

>sp|Q61686|CBX5_MOUSE Chromobox protein homolog 5 OS=Mus musculus GN=Cbx5 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
          YV+EK++D+++ K G+V+Y LKWK + E  NTWE  ++LDC +LI  F
Sbjct: 20 YVVEKVLDRRMVK-GQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEF 66

Component of heterochromatin that recognizes and binds histone H3 tails methylated at 'Lys-9' (H3K9me), leading to epigenetic repression. In contrast, it is excluded from chromatin when 'Tyr-41' of histone H3 is phosphorylated (H3Y41ph). Can interact with lamin-B receptor (LBR). This interaction can contribute to the association of the heterochromatin with the inner nuclear membrane. Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Mus musculus (taxid: 10090)

>sp|P45973|CBX5_HUMAN Chromobox protein homolog 5 OS=Homo sapiens GN=CBX5 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
          YV+EK++D+++ K G+V+Y LKWK + E  NTWE  ++LDC +LI  F
Sbjct: 20 YVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEF 66

Component of heterochromatin that recognizes and binds histone H3 tails methylated at 'Lys-9' (H3K9me), leading to epigenetic repression. In contrast, it is excluded from chromatin when 'Tyr-41' of histone H3 is phosphorylated (H3Y41ph). Can interact with lamin-B receptor (LBR). This interaction can contribute to the association of the heterochromatin with the inner nuclear membrane. Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Homo sapiens (taxid: 9606)

>sp|P83917|CBX1_MOUSE Chromobox protein homolog 1 OS=Mus musculus GN=Cbx1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 16 VDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAG 72
          +D+++ K GKV+Y LKWK + + DNTWE  E+LDC DLI  F ++     E  K  G
Sbjct: 27 LDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKSEG 82

Component of heterochromatin. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. Interaction with lamin B receptor (LBR) can contribute to the association of the heterochromatin with the inner nuclear membrane.

Mus musculus (taxid: 10090)

>sp|P83916|CBX1_HUMAN Chromobox protein homolog 1 OS=Homo sapiens GN=CBX1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 16 VDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAG 72
          +D+++ K GKV+Y LKWK + + DNTWE  E+LDC DLI  F ++     E  K  G
Sbjct: 27 LDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKSEG 82

Component of heterochromatin. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. Interaction with lamin B receptor (LBR) can contribute to the association of the heterochromatin with the inner nuclear membrane.

Homo sapiens (taxid: 9606)

>sp|Q944N1|LHP1_SOLLC Chromo domain protein LHP1 OS=Solanum lycopersicum GN=LHP1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 7   EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENW 61
           E  Y IE  V ++ T +GKV Y +KW+ +PES NTWE   +L  C D+I A+EE+ 
Sbjct: 90  EGFYEIE-TVRRRRTVKGKVYYLIKWRGWPESANTWEPETNLSSCTDIIDAYEESL 144

Structural component of heterochromatin involved in gene repression. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
194744006	231	GF16710 [Drosophila ananassae] gi|190627	0.535	0.229	0.566	4e-12
195443904	239	GK11473 [Drosophila willistoni] gi|19416	0.565	0.234	0.571	6e-12
195143525	229	GL23765 [Drosophila persimilis] gi|19410	0.535	0.231	0.566	9e-12
125773719	229	GA20011 [Drosophila pseudoobscura pseudo	0.535	0.231	0.566	9e-12
195109128	234	GI23231 [Drosophila mojavensis] gi|19391	0.535	0.226	0.566	9e-12
195391250	235	GJ22891 [Drosophila virilis] gi|19415236	0.535	0.225	0.566	9e-12
328700735	229	PREDICTED: heterochromatin protein 1-lik	0.838	0.362	0.454	1e-11
225714180	199	Chromobox protein homolog 1 [Lepeophthei	0.606	0.301	0.55	1e-11
290561793	202	Chromobox protein homolog 1 [Lepeophthei	0.606	0.297	0.55	1e-11
290462581	203	Chromobox protein homolog 1 [Lepeophthei	0.606	0.295	0.55	1e-11

>gi|194744006|ref|XP_001954489.1| GF16710 [Drosophila ananassae] gi|190627526|gb|EDV43050.1| GF16710 [Drosophila ananassae]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
          +V+E+I+DK++T EGKV+YF+KW+ YP +DNTWE  E+ DC  LI+ FEE+ A
Sbjct: 8  FVVERIIDKRITGEGKVEYFIKWRGYPSTDNTWEPEENCDCPTLIQRFEESRA 60

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195443904|ref|XP_002069629.1| GK11473 [Drosophila willistoni] gi|194165714|gb|EDW80615.1| GK11473 [Drosophila willistoni]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 7  EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
          E  +V+E+IVDK++T EGKV+YF+KW+ YP +DNTWE  E+ DC  LI+ FEE+ A
Sbjct: 5  ESNFVVERIVDKRITGEGKVEYFIKWRGYPSADNTWEPEENCDCPALIQRFEESRA 60

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195143525|ref|XP_002012748.1| GL23765 [Drosophila persimilis] gi|194101691|gb|EDW23734.1| GL23765 [Drosophila persimilis]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
          +V+E+IVDK++T +GKV+YF+KW+ YP +DNTWE  E+ DC  LI+ FEE+ A
Sbjct: 8  FVVERIVDKRITSDGKVEYFIKWRGYPSTDNTWEPEENCDCPALIQRFEESRA 60

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125773719|ref|XP_001358118.1| GA20011 [Drosophila pseudoobscura pseudoobscura] gi|54637853|gb|EAL27255.1| GA20011 [Drosophila pseudoobscura pseudoobscura]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
          +V+E+IVDK++T +GKV+YF+KW+ YP +DNTWE  E+ DC  LI+ FEE+ A
Sbjct: 8  FVVERIVDKRITSDGKVEYFIKWRGYPSTDNTWEPEENCDCPALIQRFEESRA 60

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109128|ref|XP_001999142.1| GI23231 [Drosophila mojavensis] gi|193915736|gb|EDW14603.1| GI23231 [Drosophila mojavensis]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
          +V+E+IVDK++T +GKV+YF+KW+ YP  DNTWE  E+ DC  LI+ FEE+ A
Sbjct: 8  FVVERIVDKRITSDGKVEYFIKWRGYPSGDNTWEPEENCDCPALIQKFEESRA 60

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195391250|ref|XP_002054276.1| GJ22891 [Drosophila virilis] gi|194152362|gb|EDW67796.1| GJ22891 [Drosophila virilis]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 42/53 (79%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
          +V+E+IVDK++T +GKV+YF+KW+ YP  DNTWE  E+ DC  LI+ FEE+ A
Sbjct: 8  FVVERIVDKRITADGKVEYFIKWRGYPSGDNTWEPEENCDCPALIQKFEESRA 60

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328700735|ref|XP_001951670.2| PREDICTED: heterochromatin protein 1-like [Acyrthosiphon pisum]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 5/88 (5%)

Query: 5   EQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVE 64
           EQE+ Y++EKI+DK++ K  KV+YFLKW  Y ++DNTWE  E+L+C DLI  FE+N   +
Sbjct: 22  EQEDEYIVEKILDKRVIK-NKVEYFLKWNGYDDTDNTWEPLENLNCKDLIIDFEKNLKQQ 80

Query: 65  QEAKKK----AGEPTESLETGVSDEERR 88
            + KKK     G    S E G+S + ++
Sbjct: 81  NDRKKKEKLERGRKRTSSEAGLSQDSKK 108

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225714180|gb|ACO12936.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 47/60 (78%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKK 69
          Y +EK++DK++ K GKV+Y LKWK Y + DNTWE  E+LDC+DLI  FE+N  +++EA+K
Sbjct: 14 YSVEKVLDKRVGKNGKVEYLLKWKGYGDEDNTWEPKENLDCEDLIETFEKNRRMKKEAEK 73

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290561793|gb|ADD38294.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 47/60 (78%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKK 69
          Y +EK++DK++ K GKV+Y LKWK Y + DNTWE  E+LDC+DLI  FE+N  +++EA+K
Sbjct: 14 YSVEKVLDKRVGKNGKVEYLLKWKGYGDEDNTWEPKENLDCEDLIETFEKNRRMKKEAEK 73

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290462581|gb|ADD24338.1| Chromobox protein homolog 1 [Lepeophtheirus salmonis]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 47/60 (78%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKK 69
          Y +EK++DK++ K GKV+Y LKWK Y + DNTWE  E+LDC+DLI  FE+N  +++EA+K
Sbjct: 14 YSVEKVLDKRVGKNGKVEYLLKWKGYGDEDNTWEPKENLDCEDLIETFEKNRRMKKEAEK 73

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
FB|FBgn0039019	237	HP1c "Heterochromatin Protein	0.595	0.248	0.476	1.3e-11
UNIPROTKB|E2QXC6	183	CBX3 "Uncharacterized protein"	0.696	0.377	0.424	1.7e-11
UNIPROTKB|Q13185	183	CBX3 "Chromobox protein homolo	0.696	0.377	0.424	1.7e-11
UNIPROTKB|F1ST98	183	CBX3 "Uncharacterized protein"	0.696	0.377	0.424	1.7e-11
UNIPROTKB|Q5R6X7	183	CBX3 "Chromobox protein homolo	0.696	0.377	0.424	1.7e-11
UNIPROTKB|Q6E6J8	183	Q6E6J8 "Heterochromatin protei	0.696	0.377	0.424	1.7e-11
RGD|2322491	183	LOC100360260 "chromobox homolo	0.696	0.377	0.424	1.7e-11
UNIPROTKB|Q5RJK5	183	Cbx3 "Chromobox homolog 3 (HP1	0.696	0.377	0.424	1.7e-11
UNIPROTKB|H9L191	168	CBX1 "Uncharacterized protein"	0.797	0.470	0.402	2.2e-11
UNIPROTKB|O93480	185	CBX1 "Uncharacterized protein"	0.797	0.427	0.402	2.2e-11

FB|FBgn0039019 HP1c "Heterochromatin Protein 1c" [Drosophila melanogaster (taxid:7227)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             DK++T EGKV+Y++KW+ Y  +DNTWE  E+ DC +LI+ FEE+ A      KK GE   
Sbjct:    15 DKRITSEGKVEYYIKWRGYTSADNTWEPEENCDCPNLIQKFEESRA----KSKKRGEKKP 70

Query:    77 SLE 79
               E
Sbjct:    71 KCE 73

GO:0003682 "chromatin binding" evidence=ISS;IDA

GO:0005705 "polytene chromosome interband" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000791 "euchromatin" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0031940 "positive regulation of chromatin silencing at telomere" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

UNIPROTKB|E2QXC6 CBX3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 31/73 (42%), Positives = 47/73 (64%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI AF  +   ++  K+K G   +
Sbjct:    37 DRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNS---QKAGKEKDGTKRK 92

Query:    77 SLETGVSDEERRK 89
             SL    SD+ + K
Sbjct:    93 SLSDSESDDSKSK 105

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q13185 CBX3 "Chromobox protein homolog 3" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 31/73 (42%), Positives = 47/73 (64%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI AF  +   ++  K+K G   +
Sbjct:    37 DRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNS---QKAGKEKDGTKRK 92

Query:    77 SLETGVSDEERRK 89
             SL    SD+ + K
Sbjct:    93 SLSDSESDDSKSK 105

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005635 "nuclear envelope" evidence=ISS

GO:0006338 "chromatin remodeling" evidence=NAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005637 "nuclear inner membrane" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0000785 "chromatin" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000779 "condensed chromosome, centromeric region" evidence=ISS

GO:0005719 "nuclear euchromatin" evidence=IDA

GO:0005720 "nuclear heterochromatin" evidence=IDA

GO:0031618 "nuclear centromeric heterochromatin" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|F1ST98 CBX3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 31/73 (42%), Positives = 47/73 (64%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI AF  +   ++  K+K G   +
Sbjct:    37 DRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNS---QKAGKEKDGAKRK 92

Query:    77 SLETGVSDEERRK 89
             SL    SD+ + K
Sbjct:    93 SLSDSESDDSKSK 105

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005720 "nuclear heterochromatin" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IEA

UNIPROTKB|Q5R6X7 CBX3 "Chromobox protein homolog 3" [Pongo abelii (taxid:9601)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 31/73 (42%), Positives = 47/73 (64%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI AF  +   ++  K+K G   +
Sbjct:    37 DRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNS---QKAGKEKDGTKRK 92

Query:    77 SLETGVSDEERRK 89
             SL    SD+ + K
Sbjct:    93 SLSDSESDDSKSK 105

GO:0000779 "condensed chromosome, centromeric region" evidence=ISS

GO:0000785 "chromatin" evidence=ISS

GO:0005635 "nuclear envelope" evidence=ISS

GO:0005719 "nuclear euchromatin" evidence=ISS

GO:0005720 "nuclear heterochromatin" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0019904 "protein domain specific binding" evidence=ISS

GO:0031618 "nuclear centromeric heterochromatin" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|Q6E6J8 Q6E6J8 "Heterochromatin protein 1 gamma" [Cricetulus griseus (taxid:10029)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 31/73 (42%), Positives = 47/73 (64%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI AF  +   ++  K+K G   +
Sbjct:    37 DRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNS---QKAGKEKDGTKRK 92

Query:    77 SLETGVSDEERRK 89
             SL    SD+ + K
Sbjct:    93 SLSDSESDDSKSK 105

GO:0000779 "condensed chromosome, centromeric region" evidence=ISS

GO:0000785 "chromatin" evidence=ISS

GO:0005635 "nuclear envelope" evidence=ISS

GO:0005719 "nuclear euchromatin" evidence=ISS

GO:0005720 "nuclear heterochromatin" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0019904 "protein domain specific binding" evidence=ISS

GO:0031618 "nuclear centromeric heterochromatin" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

RGD|2322491 LOC100360260 "chromobox homolog 3-like" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 31/73 (42%), Positives = 47/73 (64%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI AF  +   ++  K+K G   +
Sbjct:    37 DRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNS---QKAGKEKDGTKRK 92

Query:    77 SLETGVSDEERRK 89
             SL    SD+ + K
Sbjct:    93 SLSDSESDDSKSK 105

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0005720 "nuclear heterochromatin" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5RJK5 Cbx3 "Chromobox homolog 3 (HP1 gamma homolog, Drosophila), isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 31/73 (42%), Positives = 47/73 (64%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             D+++   GKV+YFLKWK + ++DNTWE  E+LDC +LI AF  +   ++  K+K G   +
Sbjct:    37 DRRVVN-GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNS---QKAGKEKDGTKRK 92

Query:    77 SLETGVSDEERRK 89
             SL    SD+ + K
Sbjct:    93 SLSDSESDDSKSK 105

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H9L191 CBX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             D+++ K GKV+Y LKWK + + DNTWE  E+LDC DLI  F ++     E++K  G   +
Sbjct:    28 DRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHESEKSEGSKRK 86

Query:    77 SLETGVSDE-ERRKVGKYKERT 97
             + E+   D+ E  K  K KE +
Sbjct:    87 A-ESDTEDKGEESKPKKKKEES 107

GO:0001939 "female pronucleus" evidence=IEA

GO:0001940 "male pronucleus" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O93480 CBX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query:    17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTE 76
             D+++ K GKV+Y LKWK + + DNTWE  E+LDC DLI  F ++     E++K  G   +
Sbjct:    28 DRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHESEKSEGSKRK 86

Query:    77 SLETGVSDE-ERRKVGKYKERT 97
             + E+   D+ E  K  K KE +
Sbjct:    87 A-ESDTEDKGEESKPKKKKEES 107

GO:0001940 "male pronucleus" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0001939 "female pronucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R6X7	CBX3_PONAB	No assigned EC number	0.5272	0.5454	0.2950	yes	N/A
Q13185	CBX3_HUMAN	No assigned EC number	0.5272	0.5454	0.2950	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
pfam00385	52	pfam00385, Chromo, Chromo (CHRromatin Organisation	5e-10
smart00298	55	smart00298, CHROMO, Chromatin organization modifie	1e-08
cd00024	55	cd00024, CHROMO, Chromatin organization modifier (	2e-07

>gnl|CDD|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain

 Score = 50.3 bits (121), Expect = 5e-10
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCD--DLIRAFEE 59
           +E+I+D +L K G  +Y +KWK YP  + TWE  E+L     +LI+AFEE
Sbjct: 1  EVERILDHRLRKGGNKEYLVKWKGYPYDEATWEPEENLKACFPELIQAFEE 51

Length = 52

>gnl|CDD|214605 smart00298, CHROMO, Chromatin organization modifier domain

 Score = 46.8 bits (112), Expect = 1e-08
 Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 9  VYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLD-CDDLIRAFEE 59
           Y +EKI+D +  K+G+++Y +KWK Y  S++TWE  E+L  C   +  +++
Sbjct: 1  EYEVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52

Length = 55

>gnl|CDD|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 8  EVYVIEKIVDKKLTKE-GKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEE 59
          E Y +EKI+D +  K+ G+ +Y +KWK Y  S++TWE  E+L DC +LI  F++
Sbjct: 1  EEYEVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54

Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
PF00385	55	Chromo: Chromo (CHRromatin Organisation MOdifier)	99.71
KOG2748|consensus	369		99.71
cd00024	55	CHROMO Chromatin organization modifier (chromo) do	99.61
KOG1911|consensus	270		99.57
smart00298	55	CHROMO Chromatin organization modifier domain.	99.42
KOG0384|consensus	1373		98.05
cd00034	54	ChSh Chromo Shadow Domain, found in association wi	97.89
PF01393	58	Chromo_shadow: Chromo shadow domain Web page maint	97.7
smart00300	61	ChSh Chromo Shadow Domain.	97.6
PF14061	50	Mtf2_C: Polycomb-like MTF2 factor 2	97.27
PF11717	55	Tudor-knot: RNA binding activity-knot of a chromod	96.66
KOG0384|consensus	1373		96.27
KOG0383|consensus	696		90.5

>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation

Probab=99.71  E-value=1.8e-17  Score=96.67  Aligned_cols=50  Identities=46%  Similarity=1.016  Sum_probs=44.9

Q ss_pred             EEEEEEeeceeecCCeE---EEEEeeecCCCCCCeecccCCC-Ch-HHHHHHHHHH
Q psy2752          10 YVIEKIVDKKLTKEGKV---KYFLKWKDYPESDNTWEMAEDL-DC-DDLIRAFEEN   60 (99)
Q Consensus        10 y~Ve~Il~~r~~~~g~~---~YLVkW~gy~~~~~TWEp~~~l-~~-~~ll~~f~~~   60 (99)
                      |+|++||+++. .++..   +|||+|+|++..++||||+++| +| +.+|.+|+++
T Consensus         1 ~~Ve~Il~~r~-~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~r   55 (55)
T PF00385_consen    1 YEVERILDHRV-VKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEKR   55 (55)
T ss_dssp             EEEEEEEEEEE-ETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHHH
T ss_pred             CEEEEEEEEEE-eCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhCC
Confidence            79999999999 55554   9999999999999999999999 55 9999999875

These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....

>KOG2748|consensus

Probab=99.71  E-value=1.7e-18  Score=132.68  Aligned_cols=72  Identities=35%  Similarity=0.614  Sum_probs=63.7

Q ss_pred             cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHHHHh-hhccCCCCC
Q psy2752           4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEA-KKKAGEPTE   76 (99)
Q Consensus         4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~~~~-~kkrg~~~~   76 (99)
                      ..++.+|.+|.||.+|+ ++|.++|||||+||+..+|||||++||.++.||..|+.+....+.. .+|||...+
T Consensus         5 avGe~VfAaEsIlkkRi-rKGrvEYlVKWkGWs~kyNTWEPEENILDpRLi~AFe~rErek~~~~~kKrgpkPk   77 (369)
T KOG2748|consen    5 AVGERVFAAESILKKRI-RKGRVEYLVKWKGWSQKYNTWEPEENILDPRLIAAFEQREREKELYGKKKRGPKPK   77 (369)
T ss_pred             cchhhHHHHHHHHHHHh-hccceEEEEEecccccccCccCccccccCHHHHHHHHhhhHHHhhhhhhccCCCCc
Confidence            45788999999999999 9999999999999999999999999998899999999998877553 667776444

>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus

Probab=99.61  E-value=6.8e-16  Score=89.16  Aligned_cols=51  Identities=47%  Similarity=0.984  Sum_probs=46.3

Q ss_pred             ceEEEEEEeeceeecC--CeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHH
Q psy2752           8 EVYVIEKIVDKKLTKE--GKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEE   59 (99)
Q Consensus         8 ~~y~Ve~Il~~r~~~~--g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~   59 (99)
                      ++|.|++||+++. ..  +..+|||+|+||+..++||||.++| .++.+|.+|..
T Consensus         1 ~e~~ve~Il~~r~-~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~   54 (55)
T cd00024           1 EEYEVEKILDHRK-KKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK   54 (55)
T ss_pred             CCceEeeeeeeee-cCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence            3689999999999 55  8999999999999999999999999 56789999975

Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.

>KOG1911|consensus

Probab=99.57  E-value=1.2e-15  Score=113.92  Aligned_cols=63  Identities=51%  Similarity=0.991  Sum_probs=56.8

Q ss_pred             ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccC-CCChHHHHHHHHHHHHHHHH
Q psy2752           3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAE-DLDCDDLIRAFEENWAVEQE   66 (99)
Q Consensus         3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~-~l~~~~ll~~f~~~~~~~~~   66 (99)
                      +.+++++|+|+.|++++. .+|.++|||+|+||+..+|||||+. +++|++||.+|+..+...+.
T Consensus        42 ~~~~~~~~vvEki~~~r~-~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~k~  105 (270)
T KOG1911|consen   42 EEEEEEEYVVEKILKRRK-KNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKLKK  105 (270)
T ss_pred             cccccchhhhhhhhhccc-cCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhcccCc
Confidence            456778999999999999 8888999999999999999999999 55999999999999886554

>smart00298 CHROMO Chromatin organization modifier domain

Probab=99.42  E-value=1.2e-13  Score=79.40  Aligned_cols=52  Identities=37%  Similarity=0.845  Sum_probs=46.3

Q ss_pred             eEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCC-hHHHHHHHHHH
Q psy2752           9 VYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLD-CDDLIRAFEEN   60 (99)
Q Consensus         9 ~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~-~~~ll~~f~~~   60 (99)
                      .|.|++||+++....+..+|||+|.|++..++||+|..+|. |+.+|.+|..+
T Consensus         1 ~~~v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~~   53 (55)
T smart00298        1 EYEVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKKK   53 (55)
T ss_pred             CcchheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHHh
Confidence            36799999999327888999999999999999999999995 99999999875

>KOG0384|consensus

Probab=98.05  E-value=1.5e-06  Score=75.98  Aligned_cols=52  Identities=27%  Similarity=0.681  Sum_probs=44.7

Q ss_pred             EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENWAVE   64 (99)
Q Consensus        11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~~~~   64 (99)
                      .|++||++.....  .+|||||+|.+.+++|||+.+.+  .++..+.+|..+....
T Consensus       287 ~VdRIia~~~~~d--~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk  340 (1373)
T KOG0384|consen  287 IVDRIIAEQTSKD--PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENSK  340 (1373)
T ss_pred             hhhhhhhcccCCC--ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhccc
Confidence            7999999988333  99999999999999999999999  4677888888887644

>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e

Probab=97.89  E-value=1.8e-05  Score=46.33  Aligned_cols=47  Identities=23%  Similarity=0.527  Sum_probs=37.9

Q ss_pred             EEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752          12 IEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW   61 (99)
Q Consensus        12 Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~   61 (99)
                      |+.|++.....+|.+.|||+|+| +  ...+.|...+  .||.+|.+|++++
T Consensus         2 ~~~I~gat~~~~g~l~fl~kwk~-~--~~~lVp~~~~~~k~P~~vI~FYE~~   50 (54)
T cd00034           2 VKPISGASKSDDGELTFLAKWKD-G--QASLVPNKELNVKCPLLVISFYEEH   50 (54)
T ss_pred             ceEEEEEEEcCCCeEEEEEEEeC-C--eEEEEEHHHHHhhCcHHHHHHHHHh
Confidence            57788866623399999999999 4  4568888876  7999999999876

g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)

>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain

Probab=97.70  E-value=3.2e-05  Score=45.89  Aligned_cols=48  Identities=23%  Similarity=0.455  Sum_probs=39.9

Q ss_pred             EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW   61 (99)
Q Consensus        11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~   61 (99)
                      ..|.|++.-. ..|.+.|||+|+|.+  ..+..|..-+  .||.+|.+|++.+
T Consensus         4 ~~E~Ivg~~d-~~G~l~~likwk~~~--~~~~v~~~~~~~k~Pq~vI~FYE~~   53 (58)
T PF01393_consen    4 EWEKIVGATD-TNGELMFLIKWKNSG--EKDLVPSKEANEKCPQKVIKFYESH   53 (58)
T ss_dssp             TEEEEEEEEE-CTSSEEEEEEETTSS--SEEEEEHHHHHHHSHHHHHHHHHHT
T ss_pred             ChHHHheeec-CCCcEEEEEEECCCC--ceEEeeHHHHHHHCcHHHHHHHHHH
Confidence            4688999866 789999999999965  4678888766  6999999999875

It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.

>smart00300 ChSh Chromo Shadow Domain

Probab=97.60  E-value=2.3e-05  Score=46.87  Aligned_cols=47  Identities=23%  Similarity=0.487  Sum_probs=38.6

Q ss_pred             EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW   61 (99)
Q Consensus        11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~   61 (99)
                      ..++|++.-. .+|.+.|||+|+| +  ...+.|...+  .||.+|.+|++.+
T Consensus         8 ~~e~Ivg~~d-~~G~l~flikwk~-~--~~~lVp~~~~~~k~P~~vI~FYE~~   56 (61)
T smart00300        8 SWEDIVGITK-DDGELTFLIKWKD-D--AASLVPNKEANVKCPQKVIRFYESH   56 (61)
T ss_pred             CHHHHhceec-CCCeEEEEEEEeC-C--cEEEEEHHHHHHHChHHHHHHHHHh
Confidence            4566777766 7999999999999 4  4568888876  7999999999876

>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2

Probab=97.27  E-value=0.0004  Score=39.99  Aligned_cols=23  Identities=26%  Similarity=0.869  Sum_probs=19.8

Q ss_pred             EEeeceeecCCeEEEEEeeecCC
Q psy2752          14 KIVDKKLTKEGKVKYFLKWKDYP   36 (99)
Q Consensus        14 ~Il~~r~~~~g~~~YLVkW~gy~   36 (99)
                      +|+.+|+..+|+++|||.|.|.+
T Consensus        27 ~VlArRV~~dG~vQYLvEWeg~~   49 (50)
T PF14061_consen   27 RVLARRVTPDGKVQYLVEWEGAT   49 (50)
T ss_pred             EEEEEEEcCCCcEEEEEEecCcC
Confidence            57888887899999999999964

>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F

Probab=96.66  E-value=0.0065  Score=35.24  Aligned_cols=40  Identities=18%  Similarity=0.473  Sum_probs=33.1

Q ss_pred             ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752           8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL   48 (99)
Q Consensus         8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l   48 (99)
                      ..+---+|++.+. ..+..+|+|.+.||+...+-|.|.++|
T Consensus        14 ~~~y~A~I~~~r~-~~~~~~YyVHY~g~nkR~DeWV~~~~i   53 (55)
T PF11717_consen   14 GQWYEAKILDIRE-KNGEPEYYVHYQGWNKRLDEWVPESRI   53 (55)
T ss_dssp             TEEEEEEEEEEEE-CTTCEEEEEEETTSTGCC-EEEETTTE
T ss_pred             CcEEEEEEEEEEe-cCCCEEEEEEcCCCCCCceeeecHHHc
Confidence            3444457888888 888999999999999999999999876

...

>KOG0384|consensus

Probab=96.27  E-value=0.002  Score=57.01  Aligned_cols=39  Identities=21%  Similarity=0.446  Sum_probs=30.5

Q ss_pred             eEEEEEeeecCCCCCCeecccCCCC-----hHHHHHHHHHHHHH
Q psy2752          25 KVKYFLKWKDYPESDNTWEMAEDLD-----CDDLIRAFEENWAV   63 (99)
Q Consensus        25 ~~~YLVkW~gy~~~~~TWEp~~~l~-----~~~ll~~f~~~~~~   63 (99)
                      ..+|||||+|+++-+||||+++.|.     --.-|..|.++...
T Consensus       225 ~~qFlIKWkg~SyLHctWet~~~L~~~~~rG~kKv~nf~kK~~e  268 (1373)
T KOG0384|consen  225 EEQFLIKWKGWSYLHCTWETESELLEMNVRGLKKVDNFKKKVIE  268 (1373)
T ss_pred             hhhhheeeccccceeccccchHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999962     33456677776553

>KOG0383|consensus

Probab=90.50  E-value=0.08  Score=44.91  Aligned_cols=53  Identities=19%  Similarity=0.520  Sum_probs=44.0

Q ss_pred             EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccC-CC-ChHHHHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAE-DL-DCDDLIRAFEENWAV   63 (99)
Q Consensus        11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~-~l-~~~~ll~~f~~~~~~   63 (99)
                      .|..|+.++....+.+.|+|+|+..+.+..+|+.+. .+ .+...+++|+.....
T Consensus       210 ~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~  264 (696)
T KOG0383|consen  210 PIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREK  264 (696)
T ss_pred             ccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCc
Confidence            477888888767889999999999999999999998 44 677788888765554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
1kna_A	69	Chromo Domain Of Hp1 Complexed With Histone H3 Tail		3e-08
3dm1_A	58	Crystal Structure Of The Complex Of Human Chromobox		7e-08
2l11_A	54	Solution Nmr Structure Of The Cbx3 In Complex With		9e-08
3tzd_A	58	Crystal Structure Of The Complex Of Human Chromobox		1e-07
1ap0_A	73	Structure Of The Chromatin Binding (Chromo) Domain		3e-07
3f2u_A	55	Crystal Structure Of Human Chromobox Homolog 1 (Cbx		6e-07
3fdt_A	59	Crystal Structure Of The Complex Of Human Chromobox		1e-05
2kvm_A	74	Solution Structure Of The Cbx7 Chromodomain In Comp		6e-04
2l12_A	56	Solution Nmr Structure Of The Chromobox Protein 7 W		7e-04
2k1b_A	73	Solution Nmr Structure Of The Chromo Domain Of The		7e-04

>pdb|1KNA|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail Containing Dimethyllysine 9. Length = 69

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 21 TKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFE 58
           ++G V+Y+LKWK YPE++NTWE   +LDC DLI+ +E
Sbjct: 27 VRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYE 64

>pdb|3DM1|A Chain A, Crystal Structure Of The Complex Of Human Chromobox Homolog 3 (cbx3) With Peptide Length = 58

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 24 GKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
          GKV+YFLKWK + ++DNTWE  E+LDC +LI AF
Sbjct: 15 GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF 48

>pdb|2L11|A Chain A, Solution Nmr Structure Of The Cbx3 In Complex With H3k9me3 Peptide Length = 54

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 24 GKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
          GKV+YFLKWK + ++DNTWE  E+LDC +LI AF
Sbjct: 16 GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF 49

>pdb|3TZD|A Chain A, Crystal Structure Of The Complex Of Human Chromobox Homolog 3 (cbx3) Length = 58

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 24 GKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
          GKV+YFLKWK + ++DNTWE  E+LDC +LI AF
Sbjct: 20 GKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF 53

>pdb|1AP0|A Chain A, Structure Of The Chromatin Binding (Chromo) Domain From Mouse Modifier Protein 1, Nmr, 26 Structures Length = 73

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKK 69
          D+++ K GKV+Y LKWK + + DNTWE  E+LDC DLI  F ++     E  K
Sbjct: 21 DRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDK 72

>pdb|3F2U|A Chain A, Crystal Structure Of Human Chromobox Homolog 1 (Cbx1) Length = 55

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
          D+++ K GKV+Y LKWK + + DNTWE  E+LDC DLI  F
Sbjct: 10 DRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 49

>pdb|3FDT|A Chain A, Crystal Structure Of The Complex Of Human Chromobox Homolog 5 (Cbx5) With H3k9(Me)3 Peptide Length = 59

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 17 DKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF 57
          D+++ K G+V+Y LKWK + E  NTWE  ++LDC +LI  F
Sbjct: 11 DRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEF 50

>pdb|2KVM|A Chain A, Solution Structure Of The Cbx7 Chromodomain In Complex With A H3k27me2 Peptide Length = 74

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 18 KKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
          KK  ++GKV+Y +KWK +P   +TWE  E +    L+ A+EE
Sbjct: 21 KKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE 62

>pdb|2L12|A Chain A, Solution Nmr Structure Of The Chromobox Protein 7 With H3k9me3 Length = 56

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 18 KKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
          KK  ++GKV+Y +KWK +P   +TWE  E +    L+ A+EE
Sbjct: 12 KKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE 53

>pdb|2K1B|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The Chromobox Protein Homolog 7 Length = 73

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 18 KKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
          KK  ++GKV+Y +KWK +P   +TWE  E +    L+ A+EE
Sbjct: 29 KKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
2dnv_A	64	Chromobox protein homolog 8; chromo domain, histon	1e-15
2dnt_A	78	Chromodomain protein, Y chromosome-like, isoform B	2e-15
3g7l_A	61	Chromo domain-containing protein 1; chromodomain,	2e-14
1pfb_A	55	Polycomb protein; chromatin, histone methylation,	3e-14
3h91_A	54	Chromobox protein homolog 2; human chromobox homol	3e-14
3f2u_A	55	Chromobox protein homolog 1; human chromobox homol	6e-14
1ap0_A	73	Modifier protein 1; chromatin-binding, protein int	6e-14
2k1b_A	73	Chromobox protein homolog 7; alpha/beta protein, c	1e-13
1q3l_A	69	Heterochromatin protein 1; chromodomain, HP1, chro	1e-13
1pdq_A	72	Polycomb protein; methyllysine, chromodomain, poly	1e-13
3i91_A	54	Chromobox protein homolog 8; chromobox homolog 8,	2e-13
2d9u_A	74	Chromobox protein homolog 2 (isoform 2); chromobox	2e-13
3fdt_A	59	Chromobox protein homolog 5; chromobox homolog5, C	2e-13
2kvm_A	74	Chromobox protein homolog 7; histone modification,	3e-13
1g6z_A	70	CLR4 protein; transferase; NMR {Schizosaccharomyce	2e-12
3mts_A	64	Histone-lysine N-methyltransferase SUV39H1; histon	7e-12
3lwe_A	62	M-phase phosphoprotein 8; MPP8, structural genomic	9e-12
2ee1_A	64	Chromodomain helicase-DNA-binding protein 4; EC 3.	2e-06
2epb_A	68	Chromodomain-helicase-DNA-binding protein 6; struc	4e-05

>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2 Length = 64

 Score = 64.3 bits (157), Expect = 1e-15
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 2  AEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
          +    E V+  E ++ +++ K G+++Y +KWK + +  +TWE  E++    L+ AFE  
Sbjct: 3  SGSSGERVFAAEALLKRRIRK-GRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFESG 60

>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2 Length = 78

 Score = 64.0 bits (156), Expect = 2e-15
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 2  AEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEEN 60
          +    EE+Y +E+IVDK+  K+GK +Y ++WK Y   D+TWE  + L +C++ I  F   
Sbjct: 6  SGMASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRR 65

Query: 61 WAVEQEAKKKA 71
             +Q+    +
Sbjct: 66 HTEKQKESGPS 76

>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe} Length = 61

 Score = 61.2 bits (149), Expect = 2e-14
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 4  EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEE 59
          E   +VY +E I+  ++ K G  +Y++KW  Y   DNTWE  ++L   + +++ +++
Sbjct: 2  ETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKK 58

>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2 Length = 55

 Score = 60.4 bits (147), Expect = 3e-14
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 7  EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
          + VY  EKI+ K++ K G V+Y +KWK + +  NTWE   ++    LI  +E+ 
Sbjct: 1  DLVYAAEKIIQKRVKK-GVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT 53

>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} PDB: 2k28_A 3i8z_A Length = 54

 Score = 60.4 bits (147), Expect = 3e-14
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 7  EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
          E+V+  E I+ K+L K GK++Y +KW+ +    N+WE  E++    L+ AF++
Sbjct: 1  EQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK 52

>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A* Length = 55

 Score = 59.6 bits (145), Expect = 6e-14
 Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 1/51 (1%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
          YV+EK++D+++ K GKV+Y LKWK + + DNTWE  E+LDC DLI  F ++
Sbjct: 3  YVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS 52

>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A* Length = 73

 Score = 60.2 bits (146), Expect = 6e-14
 Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
           EE+EE YV+EK++D+++ K GKV+Y LKWK + + DNTWE  E+LDC DLI  F ++  
Sbjct: 7  LEEEEEEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 65

Query: 63 VEQEAKK 69
             E  K
Sbjct: 66 TAHETDK 72

>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A* Length = 73

 Score = 59.4 bits (144), Expect = 1e-13
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
            + E+V+ +E I  K++ K GKV+Y +KWK +P   +TWE  E +    L+ A+EE
Sbjct: 15 YFQGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE 70

>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A* Length = 69

 Score = 59.3 bits (144), Expect = 1e-13
 Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61
           EE+EE Y +EKI+D+++ K G V+Y+LKWK YPE++NTWE   +LDC DLI+ +E + 
Sbjct: 10 AEEEEEEYAVEKIIDRRVRK-GMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASR 67

>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2 Length = 72

 Score = 59.4 bits (144), Expect = 1e-13
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
          ++  + VY  EKI+ K++ K G V+Y +KWK + +  NTWE   ++    LI  +E+ 
Sbjct: 14 DDPVDLVYAAEKIIQKRVKK-GVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT 70

>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} PDB: 3gv6_A* 3i90_A* Length = 54

 Score = 58.5 bits (142), Expect = 2e-13
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 7  EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
          E V+  E ++ +++ K G+++Y +KWK + +  +TWE  E++    L+ AFEE
Sbjct: 1  ERVFAAEALLKRRIRK-GRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEE 52

>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 59.0 bits (143), Expect = 2e-13
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
              E+V+  E I+ K+L K GK++Y +KW+ +    N+WE  E++    L+ AF++   
Sbjct: 4  GSSGEQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEH 62

Query: 63 VEQEAKKKA 71
           ++      
Sbjct: 63 EKEVQNSGP 71

>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens} Length = 59

 Score = 58.1 bits (141), Expect = 2e-13
 Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 8  EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQE 66
          E YV+EK++D+++ K G+V+Y LKWK + E  NTWE  ++LDC +LI  F + +   +E
Sbjct: 2  EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKE 59

>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus} Length = 74

 Score = 58.7 bits (142), Expect = 3e-13
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
              E+V+ +E I  K++ K GKV+Y +KWK +P   +TWE  E +    L+ A+EE   
Sbjct: 7  SAIGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEE 65

Query: 63 VEQEAKKK 70
           ++ +  +
Sbjct: 66 RDRASGYR 73

>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2 Length = 70

 Score = 56.3 bits (136), Expect = 2e-12
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFL-KWKDYPESDNTWEMAEDL-DCDDLIRAFEEN 60
             ++E Y +E+IVD+KL + G VK +  +W +Y    +TWE  E+L  C  ++  ++  
Sbjct: 2  SSPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRR 61

>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens} Length = 64

 Score = 54.7 bits (132), Expect = 7e-12
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 12 IEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKK 70
          +E + D K  +  +  Y +KW+ YP+S++TWE  ++L C  +++ F ++   E   +  
Sbjct: 3  VEYLCDYKKIR-EQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERELLRRHH 60

>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A* Length = 62

 Score = 54.3 bits (131), Expect = 9e-12
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 7  EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEEN 60
          E+V+ +EKI+D K    GKV Y ++WK Y   D+TWE    L DC +++  F + 
Sbjct: 2  EDVFEVEKILDMKTEG-GKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKK 55

>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens} Length = 64

 Score = 40.7 bits (95), Expect = 2e-06
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 2  AEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAED--LDCDDLIRAF 57
              + E  +I +I++  + K+G V Y +KW+D P    +WE  +    D D   +++
Sbjct: 4  GSSGKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSY 61

>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 37.6 bits (87), Expect = 4e-05
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 2  AEEEQEEVYVIEKIVDKKL-----TKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRA 56
                +   +++I++        T E    Y +KW   P  ++TWE+ ED+D    ++ 
Sbjct: 4  GSSGNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVD-PAKVKE 62

Query: 57 FEE 59
          FE 
Sbjct: 63 FES 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
2rsn_A	75	Chromo domain-containing protein 1; chromodomain,	99.86
1ap0_A	73	Modifier protein 1; chromatin-binding, protein int	99.86
3fdt_A	59	Chromobox protein homolog 5; chromobox homolog5, C	99.86
3lwe_A	62	M-phase phosphoprotein 8; MPP8, structural genomic	99.86
3g7l_A	61	Chromo domain-containing protein 1; chromodomain,	99.86
3i91_A	54	Chromobox protein homolog 8; chromobox homolog 8,	99.85
2d9u_A	74	Chromobox protein homolog 2 (isoform 2); chromobox	99.85
3h91_A	54	Chromobox protein homolog 2; human chromobox homol	99.85
2rso_A	92	Chromatin-associated protein SWI6; chromodomain, s	99.85
3mts_A	64	Histone-lysine N-methyltransferase SUV39H1; histon	99.85
1q3l_A	69	Heterochromatin protein 1; chromodomain, HP1, chro	99.85
3f2u_A	55	Chromobox protein homolog 1; human chromobox homol	99.85
1pdq_A	72	Polycomb protein; methyllysine, chromodomain, poly	99.84
2kvm_A	74	Chromobox protein homolog 7; histone modification,	99.84
2dnv_A	64	Chromobox protein homolog 8; chromo domain, histon	99.84
1pfb_A	55	Polycomb protein; chromatin, histone methylation,	99.83
2dnt_A	78	Chromodomain protein, Y chromosome-like, isoform B	99.83
2k1b_A	73	Chromobox protein homolog 7; alpha/beta protein, c	99.83
4hae_A	81	CDY-like 2, chromodomain Y-like protein 2; protein	99.82
1g6z_A	70	CLR4 protein; transferase; NMR {Schizosaccharomyce	99.82
2epb_A	68	Chromodomain-helicase-DNA-binding protein 6; struc	99.66
2ee1_A	64	Chromodomain helicase-DNA-binding protein 4; EC 3.	99.61
1x3p_A	54	Cpsrp43; chromo-2 domain, chloroplasts, LHCP, prot	99.59
2b2y_C	115	CHD-1, chromodomain-helicase-DNA-binding protein 1	99.47
2h1e_A	177	Chromo domain protein 1; CHD1, tandem chromodomain	99.34
2b2y_A	187	CHD-1, chromodomain-helicase-DNA-binding protein 1	99.28
3mwy_W	800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	99.14
2b2y_A	187	CHD-1, chromodomain-helicase-DNA-binding protein 1	99.03
3kup_A	65	Chromobox protein homolog 3; chromo shadow domain,	99.01
2h1e_A	177	Chromo domain protein 1; CHD1, tandem chromodomain	98.99
2fmm_A	74	Chromobox protein homolog 1; ENT domain, chromo sh	98.91
3i3c_A	75	Chromobox protein homolog 5; CBX5, chromo shadow d	98.84
3p7j_A	87	Heterochromatin protein 1; chromo shadow domain, g	98.83
3q6s_A	78	Chromobox protein homolog 1; incenp, heterochromat	98.8
3mwy_W	800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	97.63
1e0b_A	68	SWI6 protein; chromatin-binding, chromodomain, sha	97.32
2f5k_A	102	MORF-related gene 15 isoform 1; beta barrel, gene	95.71
2lcc_A	76	AT-rich interactive domain-containing protein 4A;	95.36
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	95.22
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	94.19
2ro0_A	92	Histone acetyltransferase ESA1; HAT, chromodomain,	94.04
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	94.03
3m9p_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	93.75
2lrq_A	85	Protein MRG15, NUA4 complex subunit EAF3 homolog;	92.18
2bud_A	92	Males-absent on the first protein; transferase, MO	92.86
3oa6_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	92.24
1wgs_A	133	MYST histone acetyltransferase 1; tudor domain, MY	91.85
3m9q_A	101	Protein MALE-specific lethal-3; chromodomain, MSL3	89.59

>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}

Probab=99.86  E-value=2e-22  Score=124.79  Aligned_cols=58  Identities=29%  Similarity=0.711  Sum_probs=52.6

Q ss_pred             cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHH
Q psy2752           4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENW   61 (99)
Q Consensus         4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~   61 (99)
                      .+++++|+|++||++|...+|+++|||+|+||+..++||||++|| +|+.||.+|++++
T Consensus        16 ~~~~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~   74 (75)
T 2rsn_A           16 ETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRK   74 (75)
T ss_dssp             CCGGGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGTTTHHHHHHHHHHC
T ss_pred             CCCCceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHccChHHHHHHHHHhh
Confidence            456789999999999985678999999999999999999999999 8999999998764

>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*

Probab=99.86  E-value=2.4e-22  Score=123.79  Aligned_cols=61  Identities=49%  Similarity=0.948  Sum_probs=55.3

Q ss_pred             ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHH
Q psy2752           3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVE   64 (99)
Q Consensus         3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~   64 (99)
                      +++++++|+|++||++|. .+|.++|||+|+||+..++||||++||+|+++|.+|+.++...
T Consensus         7 ~~~~~~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~nL~~~~li~~f~~~~~~~   67 (73)
T 1ap0_A            7 LEEEEEEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTA   67 (73)
T ss_dssp             CCSCSSCCEEEEEEEEEE-CSSSEEEEEEEESSSSCCCEEEETTTCCCHHHHHHHTTTTTSS
T ss_pred             ccCCCceEEEEEEEEEEE-eCCeEEEEEEECCCCCccCcEeeHHHCCCHHHHHHHHHHhhcc
Confidence            345678999999999999 8999999999999999999999999999999999998876543

>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}

Probab=99.86  E-value=1.8e-22  Score=119.74  Aligned_cols=56  Identities=43%  Similarity=0.940  Sum_probs=49.5

Q ss_pred             ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHH
Q psy2752           8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVE   64 (99)
Q Consensus         8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~   64 (99)
                      ++|+|++||++|. .+|.++|||+|+||+..++||||++||+|++||.+|++++..+
T Consensus         2 eey~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~~~k~~   57 (59)
T 3fdt_A            2 EEYVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKM   57 (59)
T ss_dssp             CEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHC-----
T ss_pred             CeEEEEEEEEEEE-eCCeEEEEEEEeCCCcccCCccchhHCCCHHHHHHHHHhhhhc
Confidence            6899999999999 7999999999999999999999999999999999999887654

>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*

Probab=99.86  E-value=1.6e-22  Score=120.98  Aligned_cols=59  Identities=39%  Similarity=0.781  Sum_probs=54.7

Q ss_pred             CcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHHHHH
Q psy2752           6 QEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWAVEQ   65 (99)
Q Consensus         6 ~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~~~~   65 (99)
                      ++++|+|++||+++. .+|.++|||+|+||+..++||||++|| +|++||.+|+.++...+
T Consensus         1 ge~~y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~~~~k   60 (62)
T 3lwe_A            1 GEDVFEVEKILDMKT-EGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENK   60 (62)
T ss_dssp             CCCSCCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEEEEEE-cCCeEEEEEEEeCCCCcCCCeeeHhHhhccHHHHHHHHHhhHhhc
Confidence            467899999999999 899999999999999999999999999 89999999999887543

>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}

Probab=99.86  E-value=1.9e-22  Score=120.39  Aligned_cols=59  Identities=25%  Similarity=0.530  Sum_probs=50.5

Q ss_pred             ccCCcceEEEEEEeeceeecCCeE-EEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752           3 EEEQEEVYVIEKIVDKKLTKEGKV-KYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA   62 (99)
Q Consensus         3 ~~~~e~~y~Ve~Il~~r~~~~g~~-~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~   62 (99)
                      +++++++|+|++||++|. .+|.. +|||+|+||+..++||||++||.|+.+|.+|+.++.
T Consensus         1 ~E~~~~ey~VE~Il~~r~-~~g~~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~~~~~rK   60 (61)
T 3g7l_A            1 GETDADVYEVEDILADRV-NKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRK   60 (61)
T ss_dssp             ----CCEEEEEEEEEEEE-CTTSCEEEEEEETTSCGGGCEEEEGGGGTBCHHHHHHHHHC-
T ss_pred             CCCCCcEEEEEEEEEEEE-ECCCEEEEEEEEeCCCCcCCceeeHhHCCCHHHHHHHHHHhc
Confidence            356788999999999999 67776 999999999999999999999999999999988754

>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*

Probab=99.85  E-value=4.7e-22  Score=115.90  Aligned_cols=53  Identities=32%  Similarity=0.772  Sum_probs=49.7

Q ss_pred             cceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHH
Q psy2752           7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN   60 (99)
Q Consensus         7 e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~   60 (99)
                      +++|+|++||++|. .+|+.+|||||+||+..++||||++||.|++||.+|+++
T Consensus         1 e~~y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~R   53 (54)
T 3i91_A            1 ERVFAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER   53 (54)
T ss_dssp             -CEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGBCCHHHHHHHHHC
T ss_pred             CCeEEEEEEEEEEE-eCCcEEEEEEEeCCCcccCcccchhHCCCHHHHHHHHhc
Confidence            46899999999999 899999999999999999999999999999999999875

>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.5e-21  Score=120.44  Aligned_cols=63  Identities=29%  Similarity=0.610  Sum_probs=57.3

Q ss_pred             ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHHHH
Q psy2752           3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQE   66 (99)
Q Consensus         3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~~~   66 (99)
                      ..+++++|+|++||++|. .+|.++|||||+||+..++||||++||.|+.+|.+|+.+......
T Consensus         4 ~~~~~~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~li~~f~~~~~~k~~   66 (74)
T 2d9u_A            4 GSSGEQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEV   66 (74)
T ss_dssp             SCCCCCCCCEEEEEEEEE-ETTEEEEEEEETTSCTTTCEEEEGGGCCCHHHHHHHHHHHHHHCC
T ss_pred             ccCCCccEEEEEEEEEEE-eCCcEEEEEEECCCCCccCccccHHHCCCHHHHHHHHHhhhhhHH
Confidence            456788999999999999 899999999999999999999999999888999999998876554

>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A

Probab=99.85  E-value=7.2e-22  Score=115.18  Aligned_cols=53  Identities=34%  Similarity=0.771  Sum_probs=49.5

Q ss_pred             cceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHH
Q psy2752           7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN   60 (99)
Q Consensus         7 e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~   60 (99)
                      +++|+|++||+++. .+|+.+|||||+||+..++||||++||.|++||.+|+++
T Consensus         1 e~~y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~r   53 (54)
T 3h91_A            1 EQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK   53 (54)
T ss_dssp             CCEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGBCSHHHHHHHHC-
T ss_pred             CCceEEEEEEEEEE-eCCcEEEEEEEeCCCCcCCCeecHhHCCCHHHHHHHHhc
Confidence            46899999999999 899999999999999999999999999989999999865

>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}

Probab=99.85  E-value=9.8e-22  Score=125.91  Aligned_cols=58  Identities=40%  Similarity=0.854  Sum_probs=52.1

Q ss_pred             CCcceEEEEEEeeceee-cCCeEEEEEeeecCCC-CCCeecccCCC-ChHHHHHHHHHHHH
Q psy2752           5 EQEEVYVIEKIVDKKLT-KEGKVKYFLKWKDYPE-SDNTWEMAEDL-DCDDLIRAFEENWA   62 (99)
Q Consensus         5 ~~e~~y~Ve~Il~~r~~-~~g~~~YLVkW~gy~~-~~~TWEp~~~l-~~~~ll~~f~~~~~   62 (99)
                      .++++|+|++||++|+. .+|+++|||+|+||+. .++||||++|| +|++||.+|+++++
T Consensus        26 ~~~eey~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~~c~~li~~f~~~~~   86 (92)
T 2rso_A           26 EEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNEHG   86 (92)
T ss_dssp             CCCCCCCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGGTSHHHHHHHHHHHT
T ss_pred             CcCceEEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHhhHHHHHHHHHHHcC
Confidence            45678999999999985 4689999999999985 88999999999 89999999999875

>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=117.95  Aligned_cols=61  Identities=26%  Similarity=0.615  Sum_probs=55.6

Q ss_pred             EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHHHHhhhccC
Q psy2752          11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAG   72 (99)
Q Consensus        11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~~~~~kkrg   72 (99)
                      +||+||+++. .+|..+|||+|+||+..++||||++||+|++||.+|+.++.+...+++++.
T Consensus         2 EVE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~nl~c~~li~~f~~~~~~~l~~~~~~~   62 (64)
T 3mts_A            2 EVEYLCDYKK-IREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERELLRRHHRS   62 (64)
T ss_dssp             CEEEEEEEEE-CSSCEEEEEEETTSCGGGCEEEEGGGCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CceEEEEEEE-eCCeEEEEEEEecCCCcCCcEeEHHHCCCHHHHHHHHHHHHHHHHhccccC
Confidence            5999999999 899999999999999999999999999999999999999997777655543

>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*

Probab=99.85  E-value=6.3e-22  Score=120.93  Aligned_cols=57  Identities=53%  Similarity=1.130  Sum_probs=50.0

Q ss_pred             cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752           4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW   61 (99)
Q Consensus         4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~   61 (99)
                      ++++++|+|++||++|. .+|.++|||||+||+..+|||||++||+|++||.+|..++
T Consensus        11 ~~~~~ey~VEkIld~R~-~~g~~eYlVKWkGy~~~~~TWEp~enL~c~~lI~~F~~~~   67 (69)
T 1q3l_A           11 EEEEEEYAVEKIIDRRV-RKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASR   67 (69)
T ss_dssp             -----CEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHHHC
T ss_pred             ccCCCcEEEEEEEEEEE-ECCeEEEEEEEcCCCcccCCccchHHCCCHHHHHHHHHHc
Confidence            34667999999999999 8999999999999999999999999999999999998864

>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*

Probab=99.85  E-value=5.3e-22  Score=116.13  Aligned_cols=54  Identities=48%  Similarity=0.984  Sum_probs=48.9

Q ss_pred             ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752           8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA   62 (99)
Q Consensus         8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~   62 (99)
                      .+|+|++||++|. .+|..+|||+|+||+..++||||++||+|++||.+|++++.
T Consensus         1 gey~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~~qk   54 (55)
T 3f2u_A            1 GEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK   54 (55)
T ss_dssp             CCCCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGCCCHHHHHHHHC---
T ss_pred             CcEEEEEEEEEEE-eCCeEEEEEEEEeCCCccCCeeEHHHCCCHHHHHHHHHHcc
Confidence            3699999999999 79999999999999999999999999999999999998764

>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2

Probab=99.84  E-value=1.5e-21  Score=120.14  Aligned_cols=57  Identities=35%  Similarity=0.630  Sum_probs=49.5

Q ss_pred             cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752           4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW   61 (99)
Q Consensus         4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~   61 (99)
                      ..++++|+||+||++|. .+|.++|||+|+||+..++||||++||.|++||.+|..++
T Consensus        15 ~~~~~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~nTWEP~enL~~~~lI~~F~~~~   71 (72)
T 1pdq_A           15 DPVDLVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTN   71 (72)
T ss_dssp             ---CEEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHC---
T ss_pred             CCCCceEEEEEEEEEEE-eCCcEEEEEEECCCCCccCeecchHHCCCHHHHHHHHHhc
Confidence            45778999999999999 8999999999999999999999999999999999998754

>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}

Probab=99.84  E-value=3.6e-21  Score=118.68  Aligned_cols=64  Identities=33%  Similarity=0.645  Sum_probs=57.6

Q ss_pred             ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHHHHh
Q psy2752           3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEA   67 (99)
Q Consensus         3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~~~~   67 (99)
                      +.+++++|+|++||+++. .+|.++|||||+||+..+|||||++||.|+++|.+|+.+..+....
T Consensus         7 ~~~~~~~y~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~~L~~~~li~~f~~~~~~~~~~   70 (74)
T 2kvm_A            7 SAIGEQVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRAS   70 (74)
T ss_dssp             SSCCCCCCCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEETTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCccEEEEEEEEEEE-eCCcEEEEEEEcCCCCccCeEeeHHHCCCHHHHHHHHHHhhhhhhc
Confidence            355678999999999999 8999999999999999999999999998899999999988765543

>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2

Probab=99.84  E-value=8.4e-22  Score=118.51  Aligned_cols=59  Identities=27%  Similarity=0.646  Sum_probs=53.8

Q ss_pred             CccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752           2 AEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW   61 (99)
Q Consensus         2 ~~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~   61 (99)
                      ++++++++|+|++||++|. .+|.++|||||+||+..++||||++||.|++||.+|+.++
T Consensus         3 ~~~~~~~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~li~~f~~~~   61 (64)
T 2dnv_A            3 SGSSGERVFAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFESGP   61 (64)
T ss_dssp             CCSSSCCCCCCCCEEEEEE-SSSSEEEEECCSSCCCSSCCEEETTTCCCHHHHHHHHCCT
T ss_pred             cccCCCceEEEEEEEEEEE-eCCcEEEEEEECCCCcccCCccCHhHCCCHHHHHHHHHHc
Confidence            4566788999999999999 8999999999999999999999999997789999998754

>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2

Probab=99.83  E-value=2.2e-21  Score=113.44  Aligned_cols=53  Identities=38%  Similarity=0.696  Sum_probs=49.9

Q ss_pred             cceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHH
Q psy2752           7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN   60 (99)
Q Consensus         7 e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~   60 (99)
                      +++|+|++||++|. .+|.++|||+|+||+..+|||||++||.|+++|.+|+.+
T Consensus         1 d~~y~VE~Il~~r~-~~g~~~YlVKWkgy~~~~~TWEp~~~l~~~~li~~f~~~   53 (55)
T 1pfb_A            1 DLVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT   53 (55)
T ss_dssp             CEEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHHTS
T ss_pred             CCEEEEEEEEEEEE-eCCeEEEEEEEcCCCCccCcEeEHHHCCCHHHHHHHHHh
Confidence            46899999999999 899999999999999999999999999999999999864

>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2

Probab=99.83  E-value=1.5e-21  Score=121.46  Aligned_cols=61  Identities=38%  Similarity=0.839  Sum_probs=54.7

Q ss_pred             ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHHH
Q psy2752           3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWAV   63 (99)
Q Consensus         3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~~   63 (99)
                      +++++++|+|++||++|...+|.++|||||+||+..++||||++|| +|+++|.+|+.++..
T Consensus         7 ~~~~~~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~~li~~f~~~~~~   68 (78)
T 2dnt_A            7 GMASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTE   68 (78)
T ss_dssp             CSCSSCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHHSC
T ss_pred             ccCCCceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHHhHHHHHHHHHhhhhc
Confidence            3557789999999999985578999999999999999999999999 999999999987753

>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*

Probab=99.83  E-value=1.5e-21  Score=120.39  Aligned_cols=58  Identities=36%  Similarity=0.679  Sum_probs=50.9

Q ss_pred             ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752           3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW   61 (99)
Q Consensus         3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~   61 (99)
                      +.+++++|+|++||++|. .+|+++|||||+||+..+|||||++||.|++||.+|..++
T Consensus        15 ~~~~~~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~~TWEp~enL~~~~li~~F~~~~   72 (73)
T 2k1b_A           15 YFQGEQVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE   72 (73)
T ss_dssp             ----CCCCCCSEEEEEEE-ETTEEEEEEECTTCCGGGCCEEETTSCSCHHHHHHHHTSC
T ss_pred             ccCCCceEEEEEEEEEEE-cCCcEEEEEEECCCCcccCeecchHHCCCHHHHHHHHHhc
Confidence            345678999999999999 8999999999999999999999999999999999998653

>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}

Probab=99.82  E-value=1.9e-22  Score=126.63  Aligned_cols=59  Identities=34%  Similarity=0.799  Sum_probs=52.7

Q ss_pred             cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHH
Q psy2752           4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWA   62 (99)
Q Consensus         4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~   62 (99)
                      ...+++|+|++||++|...+|+++|||+|+||+..++||||++|| +|++||.+|+++++
T Consensus        18 ~~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~~   77 (81)
T 4hae_A           18 GASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM   77 (81)
T ss_dssp             CTTSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEEECCCCCCTTCSSCC
T ss_pred             CCCCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHHHHcc
Confidence            345678999999999985678999999999999999999999999 89999999987654

>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2

Probab=99.82  E-value=1.1e-21  Score=119.79  Aligned_cols=59  Identities=34%  Similarity=0.762  Sum_probs=53.6

Q ss_pred             ccCCcceEEEEEEeeceeecC-CeEE-EEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHH
Q psy2752           3 EEEQEEVYVIEKIVDKKLTKE-GKVK-YFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWA   62 (99)
Q Consensus         3 ~~~~e~~y~Ve~Il~~r~~~~-g~~~-YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~   62 (99)
                      +++++++|+|++||++|. .+ |+++ |||||+||+..++||||++|| +|++||.+|+.+..
T Consensus         2 ~~~~~~ey~VE~Il~~r~-~~~g~~~~YlVKWkGy~~~~~TWEp~enL~~~~~li~~f~~~~~   63 (70)
T 1g6z_A            2 SSPKQEEYEVERIVDEKL-DRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKR   63 (70)
T ss_dssp             CCCSSCSSCCCSCSEEEC-CTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHT
T ss_pred             CcCCCceEEEEEEEEEEE-cCCCcEEEEEEEECCCCCCCCceecHHHHhhhHHHHHHHHHhcc
Confidence            356778999999999999 55 8888 999999999999999999999 99999999998765

>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=5.2e-17  Score=98.65  Aligned_cols=55  Identities=25%  Similarity=0.571  Sum_probs=46.9

Q ss_pred             CcceEEEEEEeeceee---cCC--eEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752           6 QEEVYVIEKIVDKKLT---KEG--KVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW   61 (99)
Q Consensus         6 ~e~~y~Ve~Il~~r~~---~~g--~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~   61 (99)
                      ..+.|+|++||++|..   ..|  .++|||||+||+..++||||+++| ++++|.+|+.+.
T Consensus         8 ~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l-~~~~I~~f~~r~   67 (68)
T 2epb_A            8 NPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV-DPAKVKEFESLQ   67 (68)
T ss_dssp             CSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS-CHHHHHHHHHHC
T ss_pred             CCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc-CHHHHHHHHHhh
Confidence            3556799999999862   236  899999999999999999999999 579999999753

>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}

Probab=99.61  E-value=1.1e-16  Score=96.24  Aligned_cols=54  Identities=28%  Similarity=0.642  Sum_probs=46.1

Q ss_pred             CcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHH
Q psy2752           6 QEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEE   59 (99)
Q Consensus         6 ~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~   59 (99)
                      ..+.+.|++||++|...+|.++|||||+|++.+++|||+++..  ..++.|+.|+.
T Consensus         8 ~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~   63 (64)
T 2ee1_A            8 KPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN   63 (64)
T ss_dssp             CCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred             CCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence            4567799999999986689999999999999999999999932  45566999986

>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2

Probab=99.59  E-value=9.6e-18  Score=97.83  Aligned_cols=47  Identities=34%  Similarity=0.801  Sum_probs=41.7

Q ss_pred             EEEEEeeceeecC-CeE-EEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLTKE-GKV-KYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW   61 (99)
Q Consensus        11 ~Ve~Il~~r~~~~-g~~-~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~   61 (99)
                      +|++||++|. .+ |++ +|||||+||  +++||||++||+ +++|.+|+.++
T Consensus         2 ~VE~Ild~r~-~~~g~~~~YlVKWkgy--~~~TWEp~~nL~-~~li~~f~~~~   50 (54)
T 1x3p_A            2 VAESVIGKRV-GDDGKTIEYLVKWTDM--SDATWEPQDNVD-STLVLLYQQQQ   50 (54)
T ss_dssp             CSSCCCCBSS-CSSSCCCCBCCCCSSS--SSCSCSTTCCSS-SSSHHHHTSSC
T ss_pred             eEEEEEEEEE-cCCCcEEEEEEEECCC--CcCCccchHHCC-HHHHHHHHHHc
Confidence            5899999999 55 888 999999999  689999999998 88999997643

>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C

Probab=99.47  E-value=5.5e-16  Score=102.62  Aligned_cols=59  Identities=24%  Similarity=0.571  Sum_probs=47.7

Q ss_pred             CcceEEEEEE------eeceeecCCeEEEEEeeecCCCCCCeecccCCCChH-----HHHHHHHHHHHHHH
Q psy2752           6 QEEVYVIEKI------VDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCD-----DLIRAFEENWAVEQ   65 (99)
Q Consensus         6 ~e~~y~Ve~I------l~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~-----~ll~~f~~~~~~~~   65 (99)
                      ...+|+|++|      |+.+. ..|..+|||||+||+..+|||||++||.|+     .+|..|.++.....
T Consensus        33 ~~~~Y~VE~i~Dp~~ildkR~-~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~kk~~e~~  102 (115)
T 2b2y_C           33 TTTIYAVEADGDPNAGFEKNK-EPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETK  102 (115)
T ss_dssp             GGSHHHHHHHCBTTTTCCTTS-SSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC------
T ss_pred             CCceEEEeecCCcccccccce-eCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHHHHHHHH
Confidence            4578899986      89888 899999999999999999999999999775     58999998865443

>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A

Probab=99.34  E-value=9.7e-14  Score=97.69  Aligned_cols=53  Identities=28%  Similarity=0.616  Sum_probs=47.1

Q ss_pred             cceEEEEEEeecee----ecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHH
Q psy2752           7 EEVYVIEKIVDKKL----TKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEE   59 (99)
Q Consensus         7 e~~y~Ve~Il~~r~----~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~   59 (99)
                      ++.++|++||+++.    ...|.++|||||+|++.+++||||+.++  .|+++|.+|+.
T Consensus       118 ~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~  176 (177)
T 2h1e_A          118 EEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQK  176 (177)
T ss_dssp             HHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHTC
T ss_pred             cccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHHh
Confidence            34569999999997    3678999999999999999999999999  39999999975

>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*

Probab=99.28  E-value=9.8e-13  Score=93.23  Aligned_cols=51  Identities=20%  Similarity=0.459  Sum_probs=46.6

Q ss_pred             EEEEEeeceee--cCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLT--KEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW   61 (99)
Q Consensus        11 ~Ve~Il~~r~~--~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~   61 (99)
                      +|++||+++..  ..|.++|||||+|++.+++||||+.++  .|+++|.+|+.+.
T Consensus       132 ~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R~  186 (187)
T 2b2y_A          132 IVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRK  186 (187)
T ss_dssp             SEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHTT
T ss_pred             eeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhhc
Confidence            89999999974  478999999999999999999999998  6999999999764

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}

Probab=99.14  E-value=3.5e-12  Score=104.91  Aligned_cols=58  Identities=21%  Similarity=0.542  Sum_probs=45.8

Q ss_pred             CCcceEEEEEEeeceeec-------------------CCeEEEEEeeecCCCCCCeecccCCCC-hH--HHHHHHHHHHH
Q psy2752           5 EQEEVYVIEKIVDKKLTK-------------------EGKVKYFLKWKDYPESDNTWEMAEDLD-CD--DLIRAFEENWA   62 (99)
Q Consensus         5 ~~e~~y~Ve~Il~~r~~~-------------------~g~~~YLVkW~gy~~~~~TWEp~~~l~-~~--~ll~~f~~~~~   62 (99)
                      .++++|.||+||+||. .                   +|.++|||||+||++.+|||||+++|. ++  ..|..|.++..
T Consensus        33 ~~~~~~~ve~vl~~r~-~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~~~~~~~~~~~~k~~~  111 (800)
T 3mwy_W           33 QPEDFHGIDIVINHRL-KTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFI  111 (800)
T ss_dssp             ---CCCBCSEEEEEEC-CCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCSCBTTHHHHHHHHHHT
T ss_pred             ccCCCCchhhhccccc-cccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHhhcchHHHHHHHHHHhh
Confidence            3567889999999999 6                   778999999999999999999999984 22  23667777664


Q ss_pred             H
Q psy2752          63 V   63 (99)
Q Consensus        63 ~   63 (99)
                      .
T Consensus       112 ~  112 (800)
T 3mwy_W          112 I  112 (800)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*

Probab=99.03  E-value=5.3e-12  Score=89.46  Aligned_cols=58  Identities=24%  Similarity=0.550  Sum_probs=47.1

Q ss_pred             CcceEEEEEE------eeceeecCCeEEEEEeeecCCCCCCeecccCCCCh-----HHHHHHHHHHHHHH
Q psy2752           6 QEEVYVIEKI------VDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDC-----DDLIRAFEENWAVE   64 (99)
Q Consensus         6 ~e~~y~Ve~I------l~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~-----~~ll~~f~~~~~~~   64 (99)
                      ....|.|+.|      |+.+. ..|..+|||||+||+..+|||+|+++|.|     ..+|..|.++....
T Consensus        33 ~~~~y~VE~i~d~~~~ld~r~-~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~~~~  101 (187)
T 2b2y_A           33 TTTIYAVEADGDPNAGFEKNK-EPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET  101 (187)
T ss_dssp             SSSHHHHHHHCCTTTTCC-CC-SCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHHHHH
T ss_pred             CceeEEeeccCCcccccCccc-cCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhhhcc
Confidence            4456777777      46666 67899999999999999999999999854     56799999998754

>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A

Probab=99.01  E-value=6.5e-11  Score=71.07  Aligned_cols=53  Identities=25%  Similarity=0.482  Sum_probs=44.6

Q ss_pred             ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752           8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW   61 (99)
Q Consensus         8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~   61 (99)
                      .-+++++|++... .+|.+.|||||+|++..+..+..+.|+.||.+|.+|++.+
T Consensus        11 rGle~ekI~g~~~-~~Gel~fLvKWKg~~~~d~Vpa~e~n~~~PqlVI~fYE~~   63 (65)
T 3kup_A           11 RGLDPERIIGATD-SSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEER   63 (65)
T ss_dssp             GCCCEEEEEEEEC-TTSSCEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHHH
T ss_pred             cCCCeeEEeeEEc-CCCcEEEEEEECCCChhheEEHHHHHhhChHHHHHHHHHh
Confidence            3568999999988 8999999999999988775555566668999999998765

>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A

Probab=98.99  E-value=1.2e-10  Score=81.81  Aligned_cols=53  Identities=23%  Similarity=0.593  Sum_probs=45.5

Q ss_pred             EEEEEeeceeecC-------------------CeEEEEEeeecCCCCCCeecccCCC-ChHHH--HHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLTKE-------------------GKVKYFLKWKDYPESDNTWEMAEDL-DCDDL--IRAFEENWAVE   64 (99)
Q Consensus        11 ~Ve~Il~~r~~~~-------------------g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~l--l~~f~~~~~~~   64 (99)
                      .|+.||+||.. .                   +..+|||||+||+..+|||+|+++| .|+.+  |..|.++....
T Consensus        14 ~id~v~~hr~~-~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk~~~~   88 (177)
T 2h1e_A           14 GIDIVINHRLK-TSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIE   88 (177)
T ss_dssp             CEEEEEEEEEC-TTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHHHHTHH
T ss_pred             cceeeecCCcc-ccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHHHhhhh
Confidence            59999999983 2                   2479999999999999999999999 48888  88999887643

>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A

Probab=98.91  E-value=5e-10  Score=68.74  Aligned_cols=51  Identities=22%  Similarity=0.438  Sum_probs=45.6

Q ss_pred             ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752           8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW   61 (99)
Q Consensus         8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~   61 (99)
                      ..|++++|++... ..|.+.|||+|+|++.  .+|+|...+  .||.+|.+|++.+
T Consensus        14 rGl~~ekI~g~~~-~~Gel~fLvkWkg~d~--~dlVpa~~a~~k~Pq~VI~FYE~~   66 (74)
T 2fmm_A           14 RGLEPERIIGATD-SSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEER   66 (74)
T ss_dssp             GCCCEEEEEEEEE-ETTEEEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHHHTT
T ss_pred             ccCCceEEEEEEc-CCCcEEEEEEECCCCc--ccEEEHHHHhhhChHHHHHHHHHh
Confidence            4589999999998 8999999999999775  679999988  7999999999864

>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2

Probab=98.84  E-value=2.3e-10  Score=70.51  Aligned_cols=52  Identities=27%  Similarity=0.467  Sum_probs=39.4

Q ss_pred             eEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752           9 VYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW   61 (99)
Q Consensus         9 ~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~   61 (99)
                      .+++++|++... .+|.+.|||||+|++..+..+..+.|+.||.+|++|++.+
T Consensus        22 Gle~EkIlg~t~-~~Gel~fLVKWKg~~e~dlVpa~ean~k~PqlVI~FYEer   73 (75)
T 3i3c_A           22 GLEPEKIIGATD-SCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEER   73 (75)
T ss_dssp             CCCEEEEEEEEC----CCEEEEEETTSSCEEEEEHHHHHHHCHHHHHHHHTC-
T ss_pred             CCCeeEEeeEEc-cCCcEEEEEEECCCChhceEEHHHHhhhChHHHHHHHHHh
Confidence            468999999988 8999999999999887664444455558999999998754

>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}

Probab=98.83  E-value=9.8e-10  Score=69.41  Aligned_cols=54  Identities=13%  Similarity=0.223  Sum_probs=46.7

Q ss_pred             ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752           8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA   62 (99)
Q Consensus         8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~   62 (99)
                      .-+++++||+... .+|.+.|||+|+|++..+..+..+.|+.||.+|++|+..+-
T Consensus        24 RGle~EkIlgat~-~~Gel~fLVKWKg~~e~DlVpa~ean~k~PqlVI~FYEerl   77 (87)
T 3p7j_A           24 RGLEAEKILGASD-NNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERL   77 (87)
T ss_dssp             TTCCEEEEEEEEE-ETTEEEEEEEETTCSSCEEEEHHHHHHHCHHHHHHHHHHTC
T ss_pred             CCCCceEEeeEEc-cCCcEEEEEEECCCCccceEeHHHHhhhChHHHHHHHHHhc
Confidence            3568999999988 89999999999999988877777777789999999987654

>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2

Probab=98.80  E-value=5.5e-10  Score=69.24  Aligned_cols=54  Identities=20%  Similarity=0.410  Sum_probs=43.8

Q ss_pred             ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752           8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA   62 (99)
Q Consensus         8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~   62 (99)
                      -.+++++|++... ..|.+.|||+|+|++..+..+..+.|+.||.+|++|+..+-
T Consensus         8 rGle~EkI~g~~~-~~Gel~fLvKWKg~~~~dlVpa~ean~k~PqlVI~FYE~~l   61 (78)
T 3q6s_A            8 RGLEPERIIGATD-SSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERL   61 (78)
T ss_dssp             GCCCEEEEEEEEC-TTSSCEEEEEETTCSCEEEEEHHHHHHHSHHHHHHHHHTTE
T ss_pred             cCCCceEEeeEEc-CCCcEEEEEEECCCChhheEeHHHHHhhChHHHHHHHHHhc
Confidence            3568999999988 89999999999998876644444555579999999988765

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}

Probab=97.63  E-value=8.9e-06  Score=66.91  Aligned_cols=54  Identities=24%  Similarity=0.535  Sum_probs=43.7

Q ss_pred             eEEEEEEeeceee----cCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHHH
Q psy2752           9 VYVIEKIVDKKLT----KEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENWA   62 (99)
Q Consensus         9 ~y~Ve~Il~~r~~----~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~~   62 (99)
                      ...|++||+++..    ..+..+|||||+|.+.+++|||....+  ..++.|..|..+..
T Consensus       145 ~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r~~  204 (800)
T 3mwy_W          145 FHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNREN  204 (800)
T ss_dssp             TTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHTTT
T ss_pred             ccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhhhHHHHHHHHHhhh
Confidence            3379999998862    345689999999999999999998776  46788888876554

>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2

Probab=97.32  E-value=9.9e-05  Score=44.31  Aligned_cols=48  Identities=17%  Similarity=0.353  Sum_probs=37.4

Q ss_pred             EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW   61 (99)
Q Consensus        11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~   61 (99)
                      .|++|++......|.+.|||+|+|...   +..|....  .||.+|.+|++.+
T Consensus        12 ~Ve~I~g~~~~~~g~L~flikwk~~~~---~~Vpa~~a~~kcPq~vI~FYE~~   61 (68)
T 1e0b_A           12 LVSSIDTIERKDDGTLEIYLTWKNGAI---SHHPSTITNKKCPQKMLQFYESH   61 (68)
T ss_dssp             TEEEEEEEEECTTSCEEEEEEETTSCE---EEEEHHHHHHHSHHHHHHHHHTC
T ss_pred             heeEEEEEEECCCCEEEEEEEECCCCc---cceEHHHhHhhCCHHHHHHHHHh
Confidence            477888776646899999999998543   34777655  6999999999865

>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A

Probab=95.71  E-value=0.023  Score=36.35  Aligned_cols=34  Identities=24%  Similarity=0.549  Sum_probs=30.3

Q ss_pred             EEeeceeecCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752          14 KIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL   48 (99)
Q Consensus        14 ~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l   48 (99)
                      +||..+. .++...|+|.+.||....+-|.|++.|
T Consensus        41 kIl~v~~-~~~~~~Y~VHY~GwNkR~DEWV~~~Rl   74 (102)
T 2f5k_A           41 KCVKVAI-KDKQVKYFIHYSGWNKNWDEWVPESRV   74 (102)
T ss_dssp             EEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred             EEEEEEE-cCCCcEEEEEeCCcCCCceeeccHhhc
Confidence            5667666 688999999999999999999999998

>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}

Probab=95.36  E-value=0.017  Score=35.02  Aligned_cols=35  Identities=17%  Similarity=0.501  Sum_probs=30.2

Q ss_pred             EEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752          13 EKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL   48 (99)
Q Consensus        13 e~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l   48 (99)
                      -+||..+. ..|...|+|.+.||....+-|.|.+.|
T Consensus        27 AkIl~i~~-~~~~~~Y~VHY~gwnkr~DEWV~~~ri   61 (76)
T 2lcc_A           27 ASIKSTEI-DDGEVLYLVHYYGWNVRYDEWVKADRI   61 (76)
T ss_dssp             EEEEEEEE-ETTEEEEEEEETTSCCSSCEEEEGGGE
T ss_pred             EEEEEEEc-cCCceEEEEEeCCcCCCceEecChhhc
Confidence            35666666 788999999999999999999999877

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=95.22  E-value=0.039  Score=38.27  Aligned_cols=48  Identities=27%  Similarity=0.626  Sum_probs=37.4

Q ss_pred             EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA   62 (99)
Q Consensus        11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~   62 (99)
                      .+..++..+. ..+..+||++|.++.  .++|.+..++. +.++.+|.....
T Consensus       188 ~~~~~~~~~~-~~~~~e~l~~~~~~~--~~~w~~~~~i~-~~li~~y~~~~~  235 (244)
T 3ui2_A          188 EVDEIVEKRG-KGKDVEYLVRWKDGG--DCEWVKGVHVA-EDVAKDYEDGLE  235 (244)
T ss_dssp             EEEEEEEEES-CTTSCEEEEEESSSS--CEEEEESTTBC-HHHHHHHHHHHC
T ss_pred             cHHHHHHHhc-cCcchhhhhhhcCCC--CCCcCcchhcC-HHHHHHHHHHHH
Confidence            4566777776 677889999997654  67999999987 578889877654

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.19  E-value=0.043  Score=34.11  Aligned_cols=37  Identities=22%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             EEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCCh
Q psy2752          13 EKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDC   50 (99)
Q Consensus        13 e~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~   50 (99)
                      -+||..+. ..+..+|+|.+.||....+-|.+.+.|+.
T Consensus        32 AkIl~i~~-~~~~~~YyVHY~g~NkRlDEWV~~~rl~~   68 (87)
T 2eko_A           32 AEILSVKD-ISGRKLFYVHYIDFNRRLDEWVTHERLDL   68 (87)
T ss_dssp             EEEEEECC-SSSCCCEEEEECSSCSCCCEEECTTTBCG
T ss_pred             EEEEEEEE-cCCCcEEEEEeCCCCcccccccCHhHccc
Confidence            45677666 67889999999999999999999999953

>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=94.04  E-value=0.059  Score=33.77  Aligned_cols=37  Identities=11%  Similarity=0.496  Sum_probs=31.6

Q ss_pred             EEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCC
Q psy2752          12 IEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLD   49 (99)
Q Consensus        12 Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~   49 (99)
                      --+||..+. ..|..+|+|.+.||....+-|.+.+.|+
T Consensus        40 ~AkIl~ir~-~~~~~~YyVHY~g~NkRlDEWV~~~rl~   76 (92)
T 2ro0_A           40 LAEILSINT-RKAPPKFYVHYVNYNKRLDEWITTDRIN   76 (92)
T ss_dssp             EEEEEEEEC-SSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred             EEEEEEEEE-cCCCcEEEEEeCCcCcccccccCHhHcc
Confidence            346777777 6788999999999999999999999883

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=94.03  E-value=0.075  Score=33.50  Aligned_cols=36  Identities=11%  Similarity=0.484  Sum_probs=31.5

Q ss_pred             EEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCC
Q psy2752          13 EKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLD   49 (99)
Q Consensus        13 e~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~   49 (99)
                      -+||..+. ..|..+|+|.+.||...-+-|.+.+.|+
T Consensus        43 AeIl~ir~-~~g~~~YYVHY~g~NkRlDEWV~~~RI~   78 (94)
T 2rnz_A           43 AEILSINT-RKAPPKFYVHYVNYNKRLDEWITTDRIN   78 (94)
T ss_dssp             EEEEEEEC-SSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred             EEEEEEEE-cCCCcEEEEEeCCcCcccccccCHHHcc
Confidence            46777777 6788999999999999999999999884

>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}

Probab=92.18  E-value=0.017  Score=35.69  Aligned_cols=34  Identities=15%  Similarity=0.480  Sum_probs=28.9

Q ss_pred             EEeeceeecCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752          14 KIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL   48 (99)
Q Consensus        14 ~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l   48 (99)
                      +||..+. .+|...|+|.+.||....+-|.|++.|
T Consensus        31 kIl~i~~-~~~~~~YyVHY~GwNkR~DEWV~~~Rl   64 (85)
T 2lrq_A           31 KVLKTKP-DATPVEYYIHYAGWSKNWDEWVPENRV   64 (85)
Confidence            4566565 567889999999999999999999887

>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3

Probab=92.86  E-value=0.16  Score=31.89  Aligned_cols=36  Identities=8%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             EEEeeceeec--CCeEEEEEeeecCCCCCCeecccCCC
Q psy2752          13 EKIVDKKLTK--EGKVKYFLKWKDYPESDNTWEMAEDL   48 (99)
Q Consensus        13 e~Il~~r~~~--~g~~~YLVkW~gy~~~~~TWEp~~~l   48 (99)
                      -+||..+...  .+..+|+|.|.||...-+-|.+.+.|
T Consensus        33 AeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL   70 (92)
T 2bud_A           33 GQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRI   70 (92)
T ss_dssp             EEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred             EEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHh
Confidence            3566666622  26789999999999999999999998

>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*

Probab=92.24  E-value=0.23  Score=32.09  Aligned_cols=40  Identities=20%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             ceEEEEEEeeceee--cC--CeEEEEEeeecCCCCCCeecccCCC
Q psy2752           8 EVYVIEKIVDKKLT--KE--GKVKYFLKWKDYPESDNTWEMAEDL   48 (99)
Q Consensus         8 ~~y~Ve~Il~~r~~--~~--g~~~YLVkW~gy~~~~~TWEp~~~l   48 (99)
                      -.|+. +||+....  ..  +...|+|...||....+-|.|++.|
T Consensus        38 llYeA-KIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drl   81 (110)
T 3oa6_A           38 VLYDA-KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV   81 (110)
T ss_dssp             CEEEE-EEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred             ccEEE-EEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhh
Confidence            34654 46655432  22  2468999999999999999999998

>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3

Probab=91.85  E-value=0.45  Score=31.42  Aligned_cols=37  Identities=11%  Similarity=0.522  Sum_probs=30.3

Q ss_pred             EEEeeceee-cCCeEEEEEeeecCCCCCCeecccCCCC
Q psy2752          13 EKIVDKKLT-KEGKVKYFLKWKDYPESDNTWEMAEDLD   49 (99)
Q Consensus        13 e~Il~~r~~-~~g~~~YLVkW~gy~~~~~TWEp~~~l~   49 (99)
                      -+||..+.. ..+..+|+|.+.||....+-|.+.+.|+
T Consensus        31 AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~   68 (133)
T 1wgs_A           31 AEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA   68 (133)
T ss_dssp             EEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred             EEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcc
Confidence            356665542 3578999999999999999999999984

>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0

Probab=89.59  E-value=0.62  Score=29.60  Aligned_cols=42  Identities=14%  Similarity=0.111  Sum_probs=31.4

Q ss_pred             CcceEEEEEEeeceee----cCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752           6 QEEVYVIEKIVDKKLT----KEGKVKYFLKWKDYPESDNTWEMAEDL   48 (99)
Q Consensus         6 ~e~~y~Ve~Il~~r~~----~~g~~~YLVkW~gy~~~~~TWEp~~~l   48 (99)
                      +...|+. +||+....    ..+...|+|...||....+-|.|++.|
T Consensus        36 g~~lYeA-KIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRi   81 (101)
T 3m9q_A           36 ARVLYTS-KVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVL   81 (101)
T ss_dssp             CCCEEEE-EEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGE
T ss_pred             CCcceEe-EEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHc
Confidence            4455653 45555442    245789999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1guwa_	73	b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mou	4e-12
d2dnva1	52	b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mo	8e-12
d2dnta1	66	b.34.13.2 (A:8-73) Chromodomain protein, Y-like is	8e-12
d1pfba_	55	b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Dr	4e-11
d1q3la_	52	b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fru	4e-11
d1g6za_	70	b.34.13.2 (A:) Histone methyltransferase clr4, chr	1e-10
d2dy8a1	69	b.34.13.2 (A:279-347) ATP-dependent helicase CHD1	9e-09
d2b2ya1	80	b.34.13.2 (A:108-187) ATP-dependent helicase CHD1	8e-08
d1x3pa1	54	b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidops	3e-06
d2dy7a1	81	b.34.13.2 (A:172-252) ATP-dependent helicase CHD1	1e-04
d2b2ya2	95	b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (	7e-04

>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

 Score = 54.4 bits (131), Expect = 4e-12
 Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
           EE+EE YV+EK++D+++ K GKV+Y LKWK + + DNTWE  E+LDC DLI  F ++  
Sbjct: 7  LEEEEEEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 65

Query: 63 VEQEAKK 69
             E  K
Sbjct: 66 TAHETDK 72

>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromobox protein homolog 8
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (128), Expect = 8e-12
 Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 7  EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFE 58
          E V+  E ++ ++  ++G+++Y +KWK + +  +TWE  E++    L+ AFE
Sbjct: 2  ERVFAAEALLKRR-IRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFE 52

>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromodomain protein, Y-like isoform
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (129), Expect = 8e-12
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 7  EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWAVEQ 65
          EE+Y +E+IVDK+  K+GK +Y ++WK Y   D+TWE  + L +C++ I  F      +Q
Sbjct: 4  EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63

Query: 66 E 66
          +
Sbjct: 64 K 64

>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Polycomb protein, Pc
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.3 bits (123), Expect = 4e-11
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 7  EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
          + VY  EKI+ K++ K G V+Y +KWK + +  NTWE   ++    LI  +E+ 
Sbjct: 1  DLVYAAEKIIQKRVKK-GVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT 53

>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.3 bits (123), Expect = 4e-11
 Identities = 26/51 (50%), Positives = 40/51 (78%), Gaps = 1/51 (1%)

Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
          Y +EKI+D++  ++G V+Y+LKWK YPE++NTWE   +LDC DLI+ +E +
Sbjct: 2  YAVEKIIDRR-VRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEAS 51

>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 70

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Histone methyltransferase clr4, chromo domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.5 bits (121), Expect = 1e-10
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 3  EEEQEEVYVIEKIVDKKLTKEGKVKYFL-KWKDYPESDNTWEMAEDL-DCDDLIRAFEEN 60
             ++E Y +E+IVD+KL + G VK +  +W +Y    +TWE  E+L  C  ++  ++  
Sbjct: 2  SSPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRR 61

Query: 61 WA 62
            
Sbjct: 62 KR 63

>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (108), Expect = 9e-09
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 4  EEQEEVYVIEKIVDKKLTK----EGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAF 57
          +E EE +V E+I+D +         +++Y +KW+     + TWE A D+     + ++ F
Sbjct: 1  DEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHF 60

Query: 58 EENWA 62
          +    
Sbjct: 61 QNREN 65

>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 8e-08
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 1  MAEEEQEEVYVIEKIVDKKLTKE--GKVKYFLKWKDYPESDNTWEMAEDLD--CDDLIRA 56
          + ++  ++  ++ +I+     K   G   Y+ KW+  P S+ +WE    +       I  
Sbjct: 15 LTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDE 74

Query: 57 FEE 59
          +  
Sbjct: 75 YFS 77

>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 54

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.0 bits (91), Expect = 3e-06
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 11 VIEKIVDKKLT-KEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
          V E ++ K++      ++Y +KW D   SD TWE  +++D   L+  +++ 
Sbjct: 2  VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVDS-TLVLLYQQQ 49

>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (81), Expect = 1e-04
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 1  MAEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
          +    +E   + + + D    K    ++ +KW D     NTWE  E +     ++  + 
Sbjct: 16 LKTSLEEGKVLEKTVPDLNNCK-ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDN 73

>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 7e-04
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 21 TKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDL 53
           + G+++Y +KWK +    NTWE  E L   ++
Sbjct: 41 KEPGEIQYLIKWKGWSHIHNTWETEETLKQQNV 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1pfba_	55	Polycomb protein, Pc {Fruit fly (Drosophila melano	99.85
d1guwa_	73	Heterochromatin protein 1, HP1 {Mouse (Mus musculu	99.85
d1q3la_	52	Heterochromatin protein 1, HP1 {Fruit fly (Drosoph	99.84
d2dnva1	52	Chromobox protein homolog 8 {Mouse (Mus musculus)	99.84
d2dnta1	66	Chromodomain protein, Y-like isoform {Human (Homo	99.84
d1g6za_	70	Histone methyltransferase clr4, chromo domain {Fis	99.79
d2dy8a1	69	ATP-dependent helicase CHD1 (Chromo domain protein	99.69
d2b2ya1	80	ATP-dependent helicase CHD1 (Chromo domain protein	99.62
d1x3pa1	54	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	99.55
d2dy7a1	81	ATP-dependent helicase CHD1 (Chromo domain protein	99.45
d2b2ya2	95	ATP-dependent helicase CHD1 (Chromo domain protein	99.24
d3deoa1	44	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	98.68
d2huga1	55	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	98.59
d2fmma1	68	Heterochromatin protein 1, HP1 {Mouse (Mus musculu	98.19
d2f5ka1	83	Mortality factor 4-like protein 1, MRG15 {Human (H	97.94
d2buda1	88	Putative histone acetyltransferase MOF {Fruit fly	94.16
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	93.0

>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Polycomb protein, Pc
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=2.1e-22  Score=116.64  Aligned_cols=54  Identities=37%  Similarity=0.661  Sum_probs=50.6

Q ss_pred             cceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752           7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW   61 (99)
Q Consensus         7 e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~   61 (99)
                      +..|+|++||++|. .+|+.+|||+|+||+..+|||||++||.|+++|.+|++++
T Consensus         1 d~~yeVE~Il~~r~-~~~~~~YlVkW~Gy~~~~~TWEp~~nl~~~~li~~f~~~~   54 (55)
T d1pfba_           1 DLVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTN   54 (55)
T ss_dssp             CEEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHHTSC
T ss_pred             CCeEEEEEEEeEEE-eCCeEEEEEEECCCCCCCCcCccHhHCCCHHHHHHHHHhc
Confidence            46899999999999 8999999999999999999999999999999999998754

>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

Probab=99.85  E-value=1.1e-22  Score=123.83  Aligned_cols=59  Identities=51%  Similarity=0.996  Sum_probs=54.1

Q ss_pred             cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHH
Q psy2752           4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAV   63 (99)
Q Consensus         4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~   63 (99)
                      ++++++|+|++||++|. ..|..+|||+|+||+..+|||||..||+|+.+|.+|++++..
T Consensus         8 ~d~~~eyeVE~Il~~r~-~~~~~~YlVkW~Gy~~~~~TWEp~~nl~~~~~i~~f~~~~~~   66 (73)
T d1guwa_           8 EEEEEEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKT   66 (73)
T ss_dssp             SCCCCCCBEEEECCCBC-CTTCCEECEEESSSCTTSCCCEETTTEECHHHHHHHHHHHCS
T ss_pred             cCCCceEEEEEEEEEEE-cCCcEEEEEEECCCCCcCCcCcChHHCCCHHHHHHHHHHhhc
Confidence            35677999999999999 899999999999999999999999999999999999987543

>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=3.7e-22  Score=114.36  Aligned_cols=51  Identities=51%  Similarity=1.168  Sum_probs=48.9

Q ss_pred             eEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHH
Q psy2752           9 VYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN   60 (99)
Q Consensus         9 ~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~   60 (99)
                      +|+|++||+++. .+|+++|||+|+||+..++||||.+||+|+++|.+|+++
T Consensus         1 EyeVE~Il~~r~-~~~~~~YlVkW~Gy~~~~~tWEp~~~l~~~~~i~~f~~~   51 (52)
T d1q3la_           1 EYAVEKIIDRRV-RKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEAS   51 (52)
T ss_dssp             CEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHHH
T ss_pred             CceEEEEEEEEE-eCCeEEEEEEECCCCCccCcEecHHHCCCHHHHHHHHhc
Confidence            599999999999 899999999999999999999999999999999999875

>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromobox protein homolog 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.4e-22  Score=114.52  Aligned_cols=52  Identities=31%  Similarity=0.756  Sum_probs=49.5

Q ss_pred             CcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHH
Q psy2752           6 QEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFE   58 (99)
Q Consensus         6 ~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~   58 (99)
                      +++.|+|++||++|. .+|+.+|||+|+||+..+|||||++||.|+.||.+|.
T Consensus         1 Ge~~yeVE~Il~~r~-~~~~~~YlVkW~gy~~~~~TWEp~~nl~~~~li~~fe   52 (52)
T d2dnva1           1 GERVFAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFE   52 (52)
T ss_dssp             SCCCCCCCCEEEEEE-SSSSEEEEECCSSCCCSSCCEEETTTCCCHHHHHHHH
T ss_pred             CCceEEEEEEEEEEE-eCCeEEEEEEECCCCCcCCeEccHHHCCChHHHHhcC
Confidence            578999999999999 8999999999999999999999999999999999985

>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromodomain protein, Y-like isoform
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-22  Score=120.91  Aligned_cols=58  Identities=40%  Similarity=0.909  Sum_probs=53.4

Q ss_pred             CCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHH
Q psy2752           5 EQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWA   62 (99)
Q Consensus         5 ~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~   62 (99)
                      .++++|+|++||++|...+|.++|||+|+||+..++||||++|| +|+.+|.+|+.++.
T Consensus         2 a~e~~y~VE~Ild~R~~~~g~~~YlVkW~Gy~~~~~TWEp~~~l~~~~~~i~~f~~~~~   60 (66)
T d2dnta1           2 ASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT   60 (66)
T ss_dssp             CSSCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHHS
T ss_pred             CCCceEEEEEEEEEEEcCCCcEEEEEEECCCCCccCeEecHHHHhhhHHHHHHHHHHcc
Confidence            46789999999999986678999999999999999999999999 89999999998765

>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Histone methyltransferase clr4, chromo domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.79  E-value=4.4e-21  Score=115.67  Aligned_cols=59  Identities=29%  Similarity=0.675  Sum_probs=52.1

Q ss_pred             cCCcceEEEEEEeeceeecC-CeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHH
Q psy2752           4 EEQEEVYVIEKIVDKKLTKE-GKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWA   62 (99)
Q Consensus         4 ~~~e~~y~Ve~Il~~r~~~~-g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~   62 (99)
                      +.++++|+|++||++|.... +..+|||+|+||+..++||||++|| +|+.+|.+|+++..
T Consensus         3 ~~~e~eyeVE~Il~~R~~~~~~~~~YlVkW~Gy~~~~~TWEp~~~L~~~~~~i~~f~~~~~   63 (70)
T d1g6za_           3 SPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKR   63 (70)
T ss_dssp             CCSSCSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHT
T ss_pred             CCCCcEEEEEEEEEEEEccCCCeEEEEEEeCCCCcccCeeecHHHHhhhHHHHHHHHHHhh
Confidence            45677999999999998544 4689999999999999999999999 89999999988754

>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=4e-18  Score=102.14  Aligned_cols=57  Identities=26%  Similarity=0.541  Sum_probs=48.9

Q ss_pred             CcceEEEEEEeeceeec----CCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHHH
Q psy2752           6 QEEVYVIEKIVDKKLTK----EGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENWA   62 (99)
Q Consensus         6 ~e~~y~Ve~Il~~r~~~----~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~~   62 (99)
                      .++.|+|++||+++...    .|.++|||||+||+..++||||+.+|  .|+++|..|+.+..
T Consensus         3 ~ee~~~VErIld~r~~~~~~~~~~~eYlVKWkg~~y~~~TWE~~~~l~~~~~~~i~~f~~r~~   65 (69)
T d2dy8a1           3 FEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNREN   65 (69)
T ss_dssp             CCSSSCEEEEEEEEEEECSSSCEEEEEEEEESCCSSCCCEEEEHHHHHHHSHHHHHHHHHHTT
T ss_pred             ccccccceEEeeEEeeeccCCCCeEEEEEEeCCCChhhCccccHHHhhhhhHHHHHHHHHHhh
Confidence            45677999999998742    36799999999999999999999999  48999999988654

>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.5e-18  Score=104.33  Aligned_cols=56  Identities=18%  Similarity=0.426  Sum_probs=48.6

Q ss_pred             CcceEEEEEEeeceee--cCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752           6 QEEVYVIEKIVDKKLT--KEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW   61 (99)
Q Consensus         6 ~e~~y~Ve~Il~~r~~--~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~   61 (99)
                      .++.|.|++||+++..  ..|.++|||||+||+..++||||..+|  .|+.+|..|+.+.
T Consensus        20 ~~e~~~VERIi~~r~~~~~~g~~~YLVKWkg~~y~~~TWE~~~~l~~~~~~~I~~f~~R~   79 (80)
T d2b2ya1          20 HKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRK   79 (80)
T ss_dssp             HHHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCceeeEEEEEEEecccCCCcEEEEEEeCCCChhhCccccHHHHhHhHHHHHHHHHHhc
Confidence            3456799999999863  357899999999999999999999999  5899999999864

>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=1.2e-17  Score=96.10  Aligned_cols=49  Identities=27%  Similarity=0.685  Sum_probs=41.3

Q ss_pred             EEEEEeeceee-cCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLT-KEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA   62 (99)
Q Consensus        11 ~Ve~Il~~r~~-~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~   62 (99)
                      .||+||++|.. ..|.++|||+|+||+  ++||||.+||. ++||.+|+.+++
T Consensus         2 vvE~Il~~R~~~~~~~~eYlVkW~gy~--~~TWEP~~nl~-~~li~~f~~~~p   51 (54)
T d1x3pa1           2 VAESVIGKRVGDDGKTIEYLVKWTDMS--DATWEPQDNVD-STLVLLYQQQQP   51 (54)
T ss_dssp             CSSCCCCBSSCSSSCCCCBCCCCSSSS--SCSCSTTCCSS-SSSHHHHTSSCC
T ss_pred             HHHHHHHHHccCCCCeEEEEEEECCCC--CCCccchHHCC-HHHHHHHHHhCc
Confidence            47899999974 347899999999994  69999999995 689999987654

>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=7.5e-15  Score=90.44  Aligned_cols=56  Identities=21%  Similarity=0.558  Sum_probs=44.3

Q ss_pred             CcceEEEEEEeeceeec------------------CCeEEEEEeeecCCCCCCeecccCCC-ChHHH--HHHHHHHH
Q psy2752           6 QEEVYVIEKIVDKKLTK------------------EGKVKYFLKWKDYPESDNTWEMAEDL-DCDDL--IRAFEENW   61 (99)
Q Consensus         6 ~e~~y~Ve~Il~~r~~~------------------~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~l--l~~f~~~~   61 (99)
                      +++.+.|++||+||...                  .+..+|||||+||+..+|||||+++| +|..+  |..|.+++
T Consensus         2 ~ed~~~IdkVldhR~k~~~e~~~~~~e~i~d~~~~~~~~eylVKW~g~~~~~~tWe~~~~L~~~~~~~k~~ny~k~~   78 (81)
T d2dy7a1           2 PEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQF   78 (81)
T ss_dssp             CCCCCCCCEEEEEECCCTTTCCCCCCCCCSSHHHHHHHCEEEEECCCCSSCCCEEECHHHHTTSSHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHhccccCCCCCCcceeeeeccccCCCCcEEEEEEECCCCcccCcccCHHHHhhcchHHHHHHHHHHH
Confidence            45677899999998721                  11359999999999999999999999 56544  88888764

>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.8e-13  Score=82.91  Aligned_cols=44  Identities=25%  Similarity=0.623  Sum_probs=35.6

Q ss_pred             CCeEEEEEeeecCCCCCCeecccCCCChH-----HHHHHHHHHHHHHHH
Q psy2752          23 EGKVKYFLKWKDYPESDNTWEMAEDLDCD-----DLIRAFEENWAVEQE   66 (99)
Q Consensus        23 ~g~~~YLVkW~gy~~~~~TWEp~~~l~~~-----~ll~~f~~~~~~~~~   66 (99)
                      .|.++|||||+||+..+|||||+++|.|+     .-|+.|.++......
T Consensus        43 ~~~~eylIKWkg~s~~hntWe~~e~L~~~~~~g~kkl~ny~kk~~~~~~   91 (95)
T d2b2ya2          43 PGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKR   91 (95)
T ss_dssp             CCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCcccCcccCHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999998443     358888887665443

>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.68  E-value=2.2e-08  Score=53.59  Aligned_cols=44  Identities=23%  Similarity=0.661  Sum_probs=36.7

Q ss_pred             EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHH
Q psy2752          11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAF   57 (99)
Q Consensus        11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f   57 (99)
                      +|.+|++.|....|..+|||.|++  ...++|+|..++. .++|.+|
T Consensus         1 ev~kIi~sR~~~dgg~eYliEWkD--~h~pSWvP~~~IA-~dvv~ey   44 (44)
T d3deoa1           1 EVNKIIGSRTAGEGAMEYLIEWKD--GHSPSWVPSSYIA-ADVVSEY   44 (44)
T ss_dssp             CEEEEEEEEEETTTEEEEEEEETT--CCCCEEEEGGGSC-HHHHHHH
T ss_pred             CcchhcceeecCCCceeEEEEecc--CCCCCcCCHHHHH-hhhhhcC
Confidence            488999999867899999999987  5568999999984 3477766

>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.59  E-value=1.7e-09  Score=61.29  Aligned_cols=46  Identities=28%  Similarity=0.695  Sum_probs=39.1

Q ss_pred             EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHH
Q psy2752          11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN   60 (99)
Q Consensus        11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~   60 (99)
                      +|++||+.|. ..+..+|||+|++  ..+++|+|..+|. .++|.+|..-
T Consensus         7 EV~~Il~~R~-~g~~~EYLVeWkD--g~~~sWV~a~~Ia-~Dvv~dfEag   52 (55)
T d2huga1           7 EVDEIVEKRG-KGKDVEYLVRWKD--GGDCEWVKGVHVA-EDVAKDYEDG   52 (55)
T ss_dssp             CSSCCCCCCC-SSBCCCCEEECTT--SSSEEECCTTBCC-HHHHHTTHHH
T ss_pred             hHHHHHhhhc-cCCCeEEEEEEcC--CCCCccccHHHHH-HHHHHHHHcc
Confidence            6789999999 7778999999987  4578999999995 4599999764

>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

Probab=98.19  E-value=2.6e-07  Score=54.32  Aligned_cols=50  Identities=22%  Similarity=0.453  Sum_probs=42.0

Q ss_pred             eEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752           9 VYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW   61 (99)
Q Consensus         9 ~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~   61 (99)
                      -+++++|++.-. .+|.+.|||+|+|.+..  -..|...+  .||.+|++|++.+
T Consensus         9 Gl~~ekIig~t~-~~gel~flvkwk~~d~~--dlVp~~~a~~~~Pq~VI~fYE~r   60 (68)
T d2fmma1           9 GLEPERIIGATD-SSGELMFLMKWKNSDEA--DLVPAKEANVKCPQVVISFYEER   60 (68)
T ss_dssp             CCCEEEEEEEEE-ETTEEEEEEEETTCSCC--EEEEHHHHHHHCHHHHHHHHHTT
T ss_pred             CCCccEEEEeEc-cCCeEEEEEEECCCChh--hheeHHHHHHhCCHHHHHHHHHh
Confidence            457999999977 89999999999997754  47777766  6999999999864

>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Mortality factor 4-like protein 1, MRG15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.7e-05  Score=47.94  Aligned_cols=40  Identities=23%  Similarity=0.497  Sum_probs=35.2

Q ss_pred             cceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752           7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL   48 (99)
Q Consensus         7 e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l   48 (99)
                      ...|+. +||+.+. ..+...|||.|.||....+.|+++++|
T Consensus        18 ~~lYeA-kil~~~~-~~~~~~Y~VHy~GWn~~~DeWv~~~ri   57 (83)
T d2f5ka1          18 PLLYEA-KCVKVAI-KDKQVKYFIHYSGWNKNWDEWVPESRV   57 (83)
T ss_dssp             SSEEEE-EEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred             CeeEEe-EEEEEEE-cCCceEEEEEecccCCccccccChhhc
Confidence            345665 5888888 789999999999999999999999998

>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Putative histone acetyltransferase MOF
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.16  E-value=0.048  Score=32.58  Aligned_cols=40  Identities=8%  Similarity=0.236  Sum_probs=33.1

Q ss_pred             eEEEEEEeeceee--cCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752           9 VYVIEKIVDKKLT--KEGKVKYFLKWKDYPESDNTWEMAEDL   48 (99)
Q Consensus         9 ~y~Ve~Il~~r~~--~~g~~~YLVkW~gy~~~~~TWEp~~~l   48 (99)
                      .|..-+||..|.+  ..|..+|+|.+.||....+-|.+...|
T Consensus        25 ~~~~AkIi~~R~~~~~~g~~eYyVHY~g~n~r~DEWV~~~ri   66 (88)
T d2buda1          25 TVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRI   66 (88)
T ss_dssp             CEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred             CEeeEEEEEEEecCCCCCceEEEEEecCccchhhhccCHhHh
Confidence            4555578888763  346789999999999999999999998

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.00  E-value=0.12  Score=32.64  Aligned_cols=41  Identities=10%  Similarity=0.474  Sum_probs=33.3

Q ss_pred             eEEEEEEeeceee-cCCeEEEEEeeecCCCCCCeecccCCCC
Q psy2752           9 VYVIEKIVDKKLT-KEGKVKYFLKWKDYPESDNTWEMAEDLD   49 (99)
Q Consensus         9 ~y~Ve~Il~~r~~-~~g~~~YLVkW~gy~~~~~TWEp~~~l~   49 (99)
                      .|.--+||..+.. ..+..+|+|.+.||....+-|.+...|.
T Consensus        27 ~~~~AkVl~~r~~~~~~~~~yyVHY~g~n~r~DEWV~~~ri~   68 (133)
T d1wgsa_          27 TWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA   68 (133)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred             CEeEEEEEEEEecccCCCeEEEEEccCCccccceecCHHHcc
Confidence            3445577777753 4578999999999999999999999984